Citrus Sinensis ID: 023000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLNAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEcccccccEHHHcccHHHcccccccccccEEEEcccccccccccccccccEEEHHccccccccccccccccccccccccccEEEEEcccEEcccccccEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHccHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcHcccccccccEEEEcccccccccccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mgtpqfpdlgkhcslpdckqidflpftcdcchkvfcldhrsynqhqcpkaerhdvtvvicplcakgvrlrpdenphitwenhvnvdcdpsnydkvtkkrkcpvrgckeILVFsntikcrdctvdhclkhrfapdhscpgpkkldTGFAFMSLLnrsrkeepkpkqspatsstkwTSSFLNAASSFRASAEAGMSKLSNEISQKLQIakdgagqssssgtggtelcpqcgarfSSVTTLIEHVEKIhdrsgnqarpkvtvdvcpkcsqgfcdpvaLVEHverdhggtsra
Flexible Loop (DISEMBL)
mgtpqfpdlgkhcslPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHqcpkaerhdvTVVICPLCAKGVRLRPDENphitwenhvnvdcdpsnydkvtkkrkcpvrgckeilvfsntikcRDCTVDHCLKHrfapdhscpgpkKLDTGFAFMSLLNrsrkeepkpkqspatsstkwtsSFLNAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIEHVEKihdrsgnqarpkVTVDVCPKCSQGFCDPVALVEHVErdhggtsra
Low Complexity Region (SEG)
MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLNAASSFRASAEAGMSKLSNEISQKLQIAKDGAgqssssgtggtELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA
Disordered region (IsUnstruct)
**********KHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCP***KLDTGFAFMS************************************************************************LCPQCGARFSSVTTLIEHVEKIHD******RPKVTVDVCPKCSQGFCDPVALVEHV**********
Disordered Region (DISOPRED)
**TPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQ********VTVVICP************************************************LVFSNTIKCRDCTVDHCLKHRF***********************************************************************************************QCGARFSSVTTLIEH******************DVCPKCSQGFCDPVALVEHV**********
Disordered Region (DISEMBL)
MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNR*******************TSSFLNAASSFRASAEAGMSKLSNEISQKLQ****************TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVE*********
Disordered Region (DISPRO)
*****FPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGP************************************************************************************CPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERD*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLNAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q8VZ42	279	Zinc finger AN1 and C2H2	yes	no	0.961	0.996	0.641	3e-99
Q0D5B9	290	Zinc finger AN1 and C2H2	yes	no	1.0	0.996	0.651	4e-99
Q9SCM4	249	Zinc finger AN1 and C2H2	no	no	0.861	1.0	0.570	4e-87
Q67YE6	186	Zinc finger AN1 domain-co	no	no	0.536	0.833	0.421	3e-30
Q8WV99	257	AN1-type zinc finger prot	yes	no	0.674	0.758	0.327	3e-24
Q6H595	188	Zinc finger AN1 domain-co	yes	no	0.449	0.691	0.442	4e-24
Q91X58	257	AN1-type zinc finger prot	yes	no	0.685	0.770	0.328	1e-23
Q9JII7	171	AN1-type zinc finger prot	no	no	0.553	0.935	0.388	1e-22
Q4KLG9	257	AN1-type zinc finger prot	yes	no	0.519	0.583	0.367	1e-22
Q5R966	194	AN1-type zinc finger prot	no	no	0.647	0.963	0.328	4e-22

>sp|Q8VZ42|SAP11_ARATH Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Arabidopsis thaliana GN=SAP11 PE=2 SV=1

 Score =  362 bits (928), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 186/290 (64%), Positives = 220/290 (75%), Gaps = 12/290 (4%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHCS+  CKQIDFLPFTCD C +VFCLDHRSY +H CPK +R DVTVVIC
Sbjct: 1   MGTPEFPDLGKHCSVDVCKQIDFLPFTCDRCLQVFCLDHRSYMKHSCPKGDREDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL P+E+P+ITWE HVN DCDPSNY+K TKK+KCPV  CKE L FSNTIKCRD
Sbjct: 61  PLCAKGVRLNPNEDPNITWEKHVNTDCDPSNYEKATKKKKCPVPRCKEYLTFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRS-RKEEPKPKQSPATSSTKWTSSFL 179
           C VDHCLKHRF PDH+CPGP+KL     FM  L+ S  ++E K  +      +  +SS  
Sbjct: 121 CNVDHCLKHRFGPDHTCPGPRKL----PFMGFLSSSTTRKEAKTTRPNKAHPSTSSSSSS 176

Query: 180 NAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLI 239
           +  S+  +SAEAG+S+L N+ISQKLQ        SSS   G  E+CPQCGA+FSSVT+L+
Sbjct: 177 SRWSNLLSSAEAGISRLGNDISQKLQF-------SSSKDNGIVEVCPQCGAKFSSVTSLV 229

Query: 240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           EHVEK H+R+  Q    VTVDVCP+CS+GF DPV LV H+ERDH GTS+A
Sbjct: 230 EHVEKTHERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDHRGTSKA 279

May be involved in environmental stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0D5B9|SAP16_ORYSJ Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Oryza sativa subsp. japonica GN=SAP16 PE=2 SV=2

 Score =  361 bits (926), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 189/290 (65%), Positives = 223/290 (76%), Gaps = 1/290 (0%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FP+LGKHCS+ DC QIDFLPFTCD C  VFCL HRSY  HQCP A + DVTV+IC
Sbjct: 1   MGTPEFPNLGKHCSVGDCNQIDFLPFTCDRCDHVFCLQHRSYTSHQCPNANQKDVTVLIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL P+E+P+ITW+ HVN DCDPSNY KVTKK+KCPV GC+E L FSNTI+C+D
Sbjct: 61  PLCAKGVRLNPNEDPNITWDTHVNSDCDPSNYQKVTKKKKCPVPGCRETLTFSNTIRCKD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEP-KPKQSPATSSTKWTSSFL 179
           CT +HCLKHRF PDH CPGP+K ++ F F ++L RS+K E      S +TSS+ W+SS L
Sbjct: 121 CTKEHCLKHRFGPDHKCPGPRKPESTFPFGNMLRRSQKAESCSNSNSSSTSSSWWSSSLL 180

Query: 180 NAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLI 239
            AA+SF++SAEAGM KLS   +Q +Q AKDG   SSS+     E C QC ARFS+V  LI
Sbjct: 181 TAATSFKSSAEAGMQKLSTATTQAIQKAKDGISTSSSNSGDLVEQCVQCPARFSTVGALI 240

Query: 240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           EH EK H  +   +R +VTVDVCPKCS+ F DPV LVEHVERDHGGTSRA
Sbjct: 241 EHCEKSHQSNSQSSRSRVTVDVCPKCSKAFRDPVLLVEHVERDHGGTSRA 290

May be involved in environmental stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SCM4|SAP13_ARATH Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 OS=Arabidopsis thaliana GN=SAP13 PE=2 SV=1

 Score =  321 bits (822), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 165/289 (57%), Positives = 198/289 (68%), Gaps = 40/289 (13%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHCS+  CKQIDFLPFTCD C +V+CLDHRSY +H CPK  R DVTVVIC
Sbjct: 1   MGTPEFPDLGKHCSVDYCKQIDFLPFTCDRCLQVYCLDHRSYMKHDCPKGNRGDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PDE+P+ITWE HVN DCDPSNY+K  KK+KCPV  C+E+L FSNTIKCRD
Sbjct: 61  PLCAKGVRLNPDEDPNITWEKHVNTDCDPSNYEKAVKKKKCPVPRCRELLTFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           C++DHCLKHRF PDHSC GPKK ++ F+FM  L+ + KE P    S +  S+ +      
Sbjct: 121 CSIDHCLKHRFGPDHSCSGPKKPESSFSFMGFLSTNTKEAPASSSSSSRWSSLF------ 174

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIE 240
                 ASAEA +S+L N+ISQKLQ A    G S                          
Sbjct: 175 ------ASAEASISRLGNDISQKLQFASGNDGNS-------------------------- 202

Query: 241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
             EK  +R+G Q   KVTVDVCPKCS+GF DPV L++H+++DH GTS+A
Sbjct: 203 --EKTQERNGKQNCGKVTVDVCPKCSRGFRDPVDLLKHIDKDHRGTSKA 249

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67YE6|SAP12_ARATH Zinc finger AN1 domain-containing stress-associated protein 12 OS=Arabidopsis thaliana GN=SAP12 PE=2 SV=2

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 97/185 (52%), Gaps = 30/185 (16%)

Query: 2   GTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICP 61
           GT  FPDLG+HC  PDCK +DFLPFTCD C  VFCL+HRSY  H CPK++    TV IC 
Sbjct: 5   GTEAFPDLGEHCQDPDCKLLDFLPFTCDGCKLVFCLEHRSYKSHNCPKSDHGSRTVSICE 64

Query: 62  LCAKGVRLRPDENPHI--TWENHVNV-DCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKC 118
            C+  +     +   I    E H    DCDP+   K T    CPV+ CKEIL F+N + C
Sbjct: 65  TCSIAIETTGFDEKGIKSLLEKHERSGDCDPNKKKKPT----CPVKRCKEILTFANNLTC 120

Query: 119 RDCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSF 178
           + C V  CLKHRF  DH C   K ++T                      A +S++W   F
Sbjct: 121 KYCGVKFCLKHRFPTDHVC-NKKIINT----------------------AGTSSRWNERF 157

Query: 179 LNAAS 183
           + A S
Sbjct: 158 MEALS 162

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8WV99|ZFN2B_HUMAN AN1-type zinc finger protein 2B OS=Homo sapiens GN=ZFAND2B PE=1 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 19/214 (8%)

Query: 5   QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
           +FPDLG HCS P C+++DFLP  CD C  +FC DH +Y QH C  A + D+ V +CPLC 
Sbjct: 2   EFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCN 61

Query: 65  KGVRLRPDENPHITWENHVNVDC--DPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
             V +   E P      H++ DC  DP+   +     KC   GC++  +    + C  C+
Sbjct: 62  VPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERAGCRQREMMK--LTCERCS 119

Query: 123 VDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNR-----SRKEEPKPKQ------SPATSS 171
            + C+KHR   DH C G +   T  A ++ ++R     S    P P Q      SP+ ++
Sbjct: 120 RNFCIKHRHPLDHDCSG-EGHPTSRAGLAAISRAQAVASTSTVPSPSQTMPSCTSPSRAT 178

Query: 172 TK---WTSSFLNAASSFRASAEAGMSKLSNEISQ 202
           T+   WT+  + A  +  +  EA    L   +++
Sbjct: 179 TRSPSWTAPPVIALQNGLSEDEALQRALEMSLAE 212

Homo sapiens (taxid: 9606)

>sp|Q6H595|SAP17_ORYSJ Zinc finger AN1 domain-containing stress-associated protein 17 OS=Oryza sativa subsp. japonica GN=SAP17 PE=2 SV=1

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 73/138 (52%), Gaps = 8/138 (5%)

Query: 2   GTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICP 61
           GT  FPDLG  C   DC Q+DFLPF CD C K FC +HR+Y  H C +A     TVV+C 
Sbjct: 5   GTEAFPDLGAQCDREDCNQLDFLPFDCDGCGKTFCAEHRTYRDHGCARAADQGRTVVVCE 64

Query: 62  LCAKGVRLR---PDENPHITWENHV-NVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIK 117
            C   +  R      +     E H  +  CDP+      +K +CPV  CKE L FSNT  
Sbjct: 65  ACGDAIERRAGDGGGDDAAVLEAHARSRRCDPAR----KRKPRCPVPRCKETLTFSNTSG 120

Query: 118 CRDCTVDHCLKHRFAPDH 135
           C+ C    CLKHRF  DH
Sbjct: 121 CKGCGQKVCLKHRFPADH 138

May be involved in environmental stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q91X58|ZFN2B_MOUSE AN1-type zinc finger protein 2B OS=Mus musculus GN=Zfand2b PE=1 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 15/213 (7%)

Query: 5   QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
           +FPDLG HCS P C+++DFLP  CD C  +FC DH +Y QH C  A + D+ V +CPLC 
Sbjct: 2   EFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCN 61

Query: 65  KGVRLRPDENPHITWENHVNVDC--DPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
             V +   E P      H++ DC  DP+   +     KC   GC++  +    + C  C 
Sbjct: 62  VPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERSGCRQREMM--KLTCDRCG 119

Query: 123 VDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSS--FLN 180
            + C+KHR   DH C G +   T  A ++ ++R+        Q  A++ST  + S    +
Sbjct: 120 RNFCIKHRHPLDHECSG-EGHQTSRAGLAAISRA--------QGLASTSTAPSPSRTLPS 170

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIAKDGAGQ 213
           ++S  RA+ +      S  I+ +  +++D A Q
Sbjct: 171 SSSPSRATPQLPTRTASPVIALQNGLSEDEALQ 203

Mus musculus (taxid: 10090)

>sp|Q9JII7|ZFN2A_MOUSE AN1-type zinc finger protein 2A OS=Mus musculus GN=Zfand2a PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 93/180 (51%), Gaps = 20/180 (11%)

Query: 5   QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
           +FPDLGKHCS P CKQ+DFLP TCD C + FC DH SY  H+CP A + DV V +CPLC 
Sbjct: 2   EFPDLGKHCSEPTCKQLDFLPITCDACKQDFCKDHFSYVGHKCPFAFKKDVQVPVCPLCN 61

Query: 65  KGVRLRPDENPHITWENHVNVDCD---PSNYDKVTKKRKCPVRGC--KEILVFSNTIKCR 119
             + ++  E P +    H++ DC      N +KV   R C   GC  KE+L     + C 
Sbjct: 62  APIPVKRGEIPDVVVGEHMDRDCTFHPGRNRNKVFTHR-CSKEGCRKKEML----QLACA 116

Query: 120 DCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFL 179
            C  + C++HR   DH+C    +  +  A     + SR  E KP      S   W +  L
Sbjct: 117 QCHGNFCIQHRHPLDHNC----QAGSSSASRGRTSTSRAAEQKP------SGVSWLAQRL 166

Mus musculus (taxid: 10090)

>sp|Q4KLG9|ZFN2B_RAT AN1-type zinc finger protein 2B OS=Rattus norvegicus GN=Zfand2b PE=2 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 5/155 (3%)

Query: 5   QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
           +FPDLG HCS P C+++DFLP  CD C  +FC DH +Y  H C  A + D+ V +CPLC 
Sbjct: 2   EFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAHHHCGSAYQKDIQVPVCPLCN 61

Query: 65  KGVRLRPDENPHITWENHVNVDC--DPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
             V +   E P      H++ DC  DP+   +     KC   GC++  +   T  C  C 
Sbjct: 62  VPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERSGCRQREMMKLT--CDRCG 119

Query: 123 VDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSR 157
            + C+KHR   DH C G +   T  A ++ ++R++
Sbjct: 120 RNFCIKHRHPLDHDCSG-EGHPTSRAGLAAISRAQ 153

Rattus norvegicus (taxid: 10116)

>sp|Q5R966|ZFN2A_PONAB AN1-type zinc finger protein 2A OS=Pongo abelii GN=ZFAND2A PE=3 SV=1

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 8/195 (4%)

Query: 5   QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
           +FPDLGKHCS   CKQ+DFLP  CD C + FC DH +Y  H+CP A + DV V +CPLC 
Sbjct: 2   EFPDLGKHCSEKTCKQLDFLPVKCDACKQDFCKDHFTYAAHKCPFAFQKDVHVPVCPLCN 61

Query: 65  KGVRLRPDENPHITWENHVNVDCD--PSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
             + ++  + P +   +H++ DCD  P    +     +C   GCK+  +    + C  C 
Sbjct: 62  TPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQ--MSCAQCH 119

Query: 123 VDHCLKHRFAPDHSCPGPKK--LDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWT--SSF 178
            + C++HR   DHSC    +  +  G + ++        +P P    A  +T+     + 
Sbjct: 120 GNFCIQHRHPLDHSCRHGSRPTIKAGCSPVTASESKPSGDPHPGSWRAVPATQVLVHPAH 179

Query: 179 LNAASSFRASAEAGM 193
           +NA +S   +A  G 
Sbjct: 180 VNAVTSVWGAAALGW 194

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
356534726	278	PREDICTED: zinc finger AN1 and C2H2 doma	0.961	1.0	0.712	1e-119
356500501	281	PREDICTED: zinc finger AN1 and C2H2 doma	0.972	1.0	0.712	1e-119
255646280	278	unknown [Glycine max]	0.961	1.0	0.709	1e-118
224090200	292	predicted protein [Populus trichocarpa]	1.0	0.989	0.715	1e-117
449503790	289	PREDICTED: zinc finger AN1 and C2H2 doma	0.989	0.989	0.712	1e-115
358248870	292	uncharacterized protein LOC100806459 [Gl	0.993	0.982	0.683	1e-115
449463338	289	PREDICTED: zinc finger AN1 and C2H2 doma	0.989	0.989	0.712	1e-115
225441795	293	PREDICTED: zinc finger AN1 and C2H2 doma	0.996	0.982	0.690	1e-115
217073750	287	unknown [Medicago truncatula]	0.989	0.996	0.697	1e-114
388517807	287	unknown [Medicago truncatula]	0.989	0.996	0.697	1e-113

>gi|356534726|ref|XP_003535903.1| PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like [Glycine max]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/289 (71%), Positives = 249/289 (86%), Gaps = 11/289 (3%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHC++ DCK IDFLPFTCDCC +V+CLDHRSYN+HQC KA++ DVTVVIC
Sbjct: 1   MGTPEFPDLGKHCAVSDCKLIDFLPFTCDCCDQVYCLDHRSYNKHQCTKADKQDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PD++P+ITWENHVN +CDPSNY+KVTKK+KCPV GC+ ILVFSNTIKCRD
Sbjct: 61  PLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCRVILVFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           CTV+HCLKHRF PDH CPGP K+++ F+FM+LLN S+K+E KPK    +S+T W++SFLN
Sbjct: 121 CTVEHCLKHRFGPDHKCPGPTKVESSFSFMNLLNGSKKQESKPK----SSATSWSTSFLN 176

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIE 240
           AAS+ RASAEAG+SKLS+      Q A+ G GQS SSG    E CPQCGA+FSSVTTL++
Sbjct: 177 AASNVRASAEAGVSKLSS-----WQTARGGVGQSHSSGQ--VEQCPQCGAKFSSVTTLVD 229

Query: 241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           HV+K+H+RS N++  KVT+DVCPKCS+GF DPVALVEHVERDHGG+SR+
Sbjct: 230 HVQKVHERSRNRSGAKVTIDVCPKCSRGFRDPVALVEHVERDHGGSSRS 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500501|ref|XP_003519070.1| PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like [Glycine max]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/289 (71%), Positives = 250/289 (86%), Gaps = 8/289 (2%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHC++ DCK IDFLPFTCD C +V+CL+HRSY +H C KA++ DVTVVIC
Sbjct: 1   MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCDQVYCLEHRSYIKHLCTKADKQDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PD++P+ITWENHVN +CDPSNY+KVTKK+KCPV GC+EILVFSNTIKCRD
Sbjct: 61  PLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCREILVFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           CTV+HCLKHRF PDH CPGPK +++ F+FM+LLN S+K+E KPK S AT+S+KW++SFLN
Sbjct: 121 CTVEHCLKHRFGPDHKCPGPKNVESSFSFMNLLNGSKKQESKPKSS-ATTSSKWSTSFLN 179

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIE 240
           AAS+ RASAEAG+SKLS       Q A+ G GQS SSG    E CPQCGA+FSSVTTL++
Sbjct: 180 AASNIRASAEAGVSKLS-----AWQTARGGVGQSHSSGQ--VEQCPQCGAKFSSVTTLVD 232

Query: 241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           HV+K+H+RSGN++  KVT+DVCPKCS+GF DPVALVEHVE+DHGG+SR+
Sbjct: 233 HVQKVHERSGNRSGAKVTIDVCPKCSRGFRDPVALVEHVEKDHGGSSRS 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646280|gb|ACU23624.1| unknown [Glycine max]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/289 (70%), Positives = 247/289 (85%), Gaps = 11/289 (3%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHC++ DCK IDFLPFTCDCC +V+CLDHRSYN+HQC KA++ DVTVVIC
Sbjct: 1   MGTPEFPDLGKHCAVSDCKLIDFLPFTCDCCDQVYCLDHRSYNKHQCTKADKQDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PD++P+ITWENHVN +CDPSNY+KVTKK+KCPV GC+ ILVFSNTIKCRD
Sbjct: 61  PLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCRVILVFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           CTV+HCLKHRF PDH CPGP K+++ F+FM+LLN S+K+E KPK    +S+T W++SFLN
Sbjct: 121 CTVEHCLKHRFGPDHKCPGPTKVESSFSFMNLLNGSKKQESKPK----SSATSWSTSFLN 176

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIE 240
           AAS+ RASAEAG+SKLS+      Q A+ G GQS SSG    E CPQCGA+FSSVTTL++
Sbjct: 177 AASNVRASAEAGVSKLSS-----WQTARGGVGQSHSSGQ--VEQCPQCGAKFSSVTTLVD 229

Query: 241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           HV+K+H RS N++  KVT+DVCPKCS+GF DPV LVEHVERDHGG+SR+
Sbjct: 230 HVQKVHGRSRNRSGAKVTIDVCPKCSRGFRDPVVLVEHVERDHGGSSRS 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090200|ref|XP_002308952.1| predicted protein [Populus trichocarpa] gi|222854928|gb|EEE92475.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/292 (71%), Positives = 245/292 (83%), Gaps = 3/292 (1%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTPQFPDLGKHCS+ DCKQIDFLPFTCD C +VFCL+HRSY +H CPKA+ + V VVIC
Sbjct: 1   MGTPQFPDLGKHCSVEDCKQIDFLPFTCDRCRQVFCLEHRSYIKHSCPKADSNGVIVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PDE+P+I+WE HVN +CDPSNYDKVTKKRKCPVRGC+E+L FSNTIKCRD
Sbjct: 61  PLCAKGVRLNPDEDPNISWEVHVNTECDPSNYDKVTKKRKCPVRGCRELLTFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           CT+DHCLKHRF PDH+CPGPKK D  F FM LLNRS+KEE KP ++ A SS+KWT++FL+
Sbjct: 121 CTLDHCLKHRFGPDHTCPGPKKPDVSFPFMGLLNRSKKEESKPNRATAVSSSKWTTNFLS 180

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIA--KDGAGQSSSSGTGGTELCPQCGARFSSVTTL 238
           AAS+ RASAEAGMSKLS+EISQ  Q A        S+ SG  G E CPQCG RFSSVT L
Sbjct: 181 AASTVRASAEAGMSKLSSEISQAWQTATNSASPSSSNGSGGMGPEECPQCGTRFSSVTNL 240

Query: 239 IEHVEKIHDRSGNQARP-KVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           I+HV+K+H++ GNQ+R  ++ ++VCPKCS+GF DPVALVEHVERDH GTS+A
Sbjct: 241 IDHVQKVHEKGGNQSRVLQLPMEVCPKCSKGFRDPVALVEHVERDHRGTSKA 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503790|ref|XP_004162178.1| PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like [Cucumis sativus] gi|56605374|emb|CAI30888.1| somatic embryogenesis zinc finger 2 [Cucumis sativus]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/292 (71%), Positives = 246/292 (84%), Gaps = 6/292 (2%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FP+LGKHC+  +CKQIDFLPFTCDCCH+VFCL+HRSYN+H CPKA+R DVTVVIC
Sbjct: 1   MGTPEFPNLGKHCNFAECKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRWDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PD++P+ITWE HVN +CDPSNY+KVTKK+KCPV GC+E+L FSNTIKCRD
Sbjct: 61  PLCAKGVRLIPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRELLTFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLD-TGFAFMSLLNRSRKEEPKPKQS-PATSSTKWTSSF 178
           C++DHCLKHRF PDH CPGPKKL+ TGF F+ LLNRSRKEE  PK++ P TSS+KWT +F
Sbjct: 121 CSLDHCLKHRFGPDHKCPGPKKLEPTGFPFVGLLNRSRKEEKGPKKALPTTSSSKWT-AF 179

Query: 179 LNAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTL 238
           LNAASS +ASAEA M+KLSNE SQ       G+  +   G G  E CPQC A+FSSV++L
Sbjct: 180 LNAASSVKASAEASMTKLSNEFSQTW--ISSGSSSNGGGGNGQVEQCPQCSAKFSSVSSL 237

Query: 239 IEHVEKIHDRSGNQARP-KVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           I+HVEK+H+R GN+  P KV +D CPKCS+GF DPVALVEH+ERDHGGTSRA
Sbjct: 238 IDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248870|ref|NP_001239954.1| uncharacterized protein LOC100806459 [Glycine max] gi|255639517|gb|ACU20053.1| unknown [Glycine max]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/294 (68%), Positives = 243/294 (82%), Gaps = 7/294 (2%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHCS+  CKQ+DFLPFTCD C++++CL+HR Y +H+C KA +HDVTV IC
Sbjct: 1   MGTPEFPDLGKHCSVSYCKQLDFLPFTCDRCNQIYCLEHRGYIKHKCTKANKHDVTVAIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PD++P+ITW+NHVNVDCDPSNY+K+TKKRKCP  GCKE+LVFSNTIKCRD
Sbjct: 61  PLCAKGVRLIPDQDPNITWDNHVNVDCDPSNYEKITKKRKCPAPGCKEVLVFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           C  DHCLKHRF PDH C GPKKL+T F+FMSLLNRSRKEEPKP  + +T+ +KW+SSFL 
Sbjct: 121 CLKDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNRSRKEEPKPNLT-STAPSKWSSSFLK 179

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIA--KDGAGQSSSSGTGG---TELCPQCGARFSSV 235
            AS+ RASA+  MSKL +EI+Q  Q A  +DG GQSS SG       E CPQCG++FSSV
Sbjct: 180 VASNIRASAQVSMSKLGDEINQVWQAATTRDGVGQSSGSGNRNDHQVEQCPQCGSKFSSV 239

Query: 236 TTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           T L++HV+K+H+R+GN+   K  +D CPKCS+GF DPV+LVEHVERDHGG SRA
Sbjct: 240 TALVDHVQKVHERNGNRLGVK-KIDACPKCSRGFLDPVSLVEHVERDHGGGSRA 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463338|ref|XP_004149391.1| PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like [Cucumis sativus]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/292 (71%), Positives = 245/292 (83%), Gaps = 6/292 (2%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FP+LGKHC+  +CKQIDFLPFTCDCCH+VFCL+HRSYN+H CPKA+R DVTVVIC
Sbjct: 1   MGTPEFPNLGKHCNFAECKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRWDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PD++P+ITWE HVN +CDPSNYDKVTKK+KCPV GC+E+L FSNTIKCRD
Sbjct: 61  PLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLD-TGFAFMSLLNRSRKEEPKPKQS-PATSSTKWTSSF 178
           C++DHCLKHRF PDH CPGPKKL+ TGF F+ LLNRSRKEE  PK++   TSS+KWT +F
Sbjct: 121 CSLDHCLKHRFGPDHKCPGPKKLEPTGFPFVGLLNRSRKEEKGPKKALSTTSSSKWT-AF 179

Query: 179 LNAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTL 238
           LNAASS +ASAEA M+KLSNE SQ       G+  +   G G  E CPQC A+FSSV++L
Sbjct: 180 LNAASSVKASAEASMTKLSNEFSQTW--ISSGSSSNGGGGNGQIEQCPQCSAKFSSVSSL 237

Query: 239 IEHVEKIHDRSGNQARP-KVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           I+HVEK+H+R GN+  P KV +D CPKCS+GF DPVALVEH+ERDHGGTSRA
Sbjct: 238 IDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441795|ref|XP_002283838.1| PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like isoform 1 [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/294 (69%), Positives = 246/294 (83%), Gaps = 6/294 (2%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHC++ DCKQIDFLPFTCD CH++FCL+HRSY +H CP A+R DVTVVIC
Sbjct: 1   MGTPEFPDLGKHCTVDDCKQIDFLPFTCDRCHQIFCLEHRSYIKHHCPTADRKDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL PDE+P++TWE HVN +CDPSNY+K TKK+KCPV GC+EIL FSNT+KCRD
Sbjct: 61  PLCAKGVRLIPDEDPNVTWETHVNTECDPSNYEKATKKKKCPVSGCREILTFSNTLKCRD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           CT+DHCLKHRF PDH CPGPKK +  F F+ LLNRS+KE+ KP ++P TSS+KW +SFLN
Sbjct: 121 CTIDHCLKHRFGPDHKCPGPKKPEAAFPFIGLLNRSKKEDSKPSRAP-TSSSKWATSFLN 179

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIAKD----GAGQSSSSGTGGTELCPQCGARFSSVT 236
            AS+ RASAEAGM+KL++E SQ  Q  +D     +G SS S  G  E CPQC A+FSSVT
Sbjct: 180 VASNVRASAEAGMTKLTSEFSQAWQTTRDGVGQSSGSSSGSRVGQVEECPQCHAKFSSVT 239

Query: 237 TLIEHVEKIHDRSGNQARP-KVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
           +L+EHVEK+H+++ N+A   KVT+DVCPKCS+GF DPV+LVEHVERDHGGTS+A
Sbjct: 240 SLVEHVEKVHEKNSNRAAVRKVTIDVCPKCSRGFRDPVSLVEHVERDHGGTSKA 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073750|gb|ACJ85235.1| unknown [Medicago truncatula]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/288 (69%), Positives = 246/288 (85%), Gaps = 2/288 (0%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHC+  DCK +DFLPFTCD C++V+CL+HRSY +H+C KA++ DVTVVIC
Sbjct: 1   MGTPEFPDLGKHCADSDCKLVDFLPFTCDRCYQVYCLEHRSYIKHRCTKADKQDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL P+++P+ITWENHVN DCDPSNY+KVTKK+KCP  GCKEILVFSNTIKC+D
Sbjct: 61  PLCAKGVRLVPEQDPNITWENHVNTDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCKD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           CT+DHCLKHRF PDH CPGPKK++T F FM+L+NRSRK+E K   S  +SS+KWT+SFLN
Sbjct: 121 CTIDHCLKHRFGPDHKCPGPKKVETNFPFMNLMNRSRKKESKTNSSSTSSSSKWTTSFLN 180

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIE 240
           AAS+ RASAEAGMSKLS EI+Q    + DG  +S+ +G    E CPQCGA+FSS+TTLI 
Sbjct: 181 AASNIRASAEAGMSKLSGEINQAWGTSSDGGRKSNDNGQ--VEQCPQCGAKFSSITTLIN 238

Query: 241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSR 288
           HV+K+H+RSG+++   VT+D CPKCS+GF DPV+LVEHVER+HGGTSR
Sbjct: 239 HVQKVHERSGSRSAANVTIDACPKCSKGFTDPVSLVEHVEREHGGTSR 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517807|gb|AFK46965.1| unknown [Medicago truncatula]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/288 (69%), Positives = 245/288 (85%), Gaps = 2/288 (0%)

Query: 1   MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
           MGTP+FPDLGKHC+  DCK +DFLPFTCD C++V+CL+HRSY +H+C KA++ DVTVVIC
Sbjct: 1   MGTPEFPDLGKHCADSDCKLVDFLPFTCDRCYQVYCLEHRSYIKHRCTKADKQDVTVVIC 60

Query: 61  PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
           PLCAKGVRL P+++P+ITWENHVN DCDPSNY+KVTKK+KCP  GCKEILVFSNTIKC+D
Sbjct: 61  PLCAKGVRLVPEQDPNITWENHVNTDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCKD 120

Query: 121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
           CT+DHCLKHRF PDH CPGPKK++T F FM+L+NRSRK+E K   S  +SS+KWT+SFLN
Sbjct: 121 CTIDHCLKHRFGPDHKCPGPKKVETNFPFMNLMNRSRKKESKTNSSSTSSSSKWTTSFLN 180

Query: 181 AASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIE 240
           AAS+ RASAEAGMSKLS EI+Q    + DG  +S+ +G    E CPQCGA+FSS+TTLI 
Sbjct: 181 AASNIRASAEAGMSKLSGEINQAWGTSSDGGRKSNDNGQ--VEQCPQCGAKFSSITTLIN 238

Query: 241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSR 288
           HV+K+H+RSG++    VT+D CPKCS+GF DPV+LVEHVER+HGGTSR
Sbjct: 239 HVQKVHERSGSRFAANVTIDACPKCSKGFTDPVSLVEHVEREHGGTSR 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:504955994	279	AT2G41835 "AT2G41835" [Arabido	0.961	0.996	0.637	1.3e-100
TAIR|locus:2103533	249	AT3G57480 "AT3G57480" [Arabido	0.809	0.939	0.576	2.6e-79
TAIR|locus:2098313	186	PMZ [Arabidopsis thaliana (tax	0.456	0.709	0.503	3.6e-34
UNIPROTKB|F1N761	258	ZFAND2B "Uncharacterized prote	0.574	0.643	0.392	2.1e-29
ZFIN|ZDB-GENE-040426-1596	282	zfand2a "zinc finger, AN1-type	0.650	0.666	0.331	1.2e-28
RGD|1310991	171	Zfand2a "zinc finger, AN1-type	0.515	0.871	0.411	1.5e-28
UNIPROTKB|B4DEN4	225	ZFAND2B "cDNA FLJ60439, highly	0.664	0.853	0.339	3.9e-28
UNIPROTKB|E7EV05	214	ZFAND2B "AN1-type zinc finger	0.664	0.897	0.339	3.9e-28
MGI|MGI:2140729	171	Zfand2a "zinc finger, AN1-type	0.519	0.877	0.414	5e-28
UNIPROTKB|J9NRY4	177	ZFAND2A "Uncharacterized prote	0.574	0.937	0.374	6.4e-28

TAIR|locus:504955994 AT2G41835 "AT2G41835" [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 185/290 (63%), Positives = 216/290 (74%)

Query:     1 MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
             MGTP+FPDLGKHCS+  CKQIDFLPFTCD C +VFCLDHRSY +H CPK +R DVTVVIC
Sbjct:     1 MGTPEFPDLGKHCSVDVCKQIDFLPFTCDRCLQVFCLDHRSYMKHSCPKGDREDVTVVIC 60

Query:    61 PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
             PLCAKGVRL P+E+P+ITWE HVN DCDPSNY+K TKK+KCPV  CKE L FSNTIKCRD
Sbjct:    61 PLCAKGVRLNPNEDPNITWEKHVNTDCDPSNYEKATKKKKCPVPRCKEYLTFSNTIKCRD 120

Query:   121 CTVDHCLKHRFAPDHSCPGPKKLD-TGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFL 179
             C VDHCLKHRF PDH+CPGP+KL   GF   S   +  K     K  P+TSS+  +S + 
Sbjct:   121 CNVDHCLKHRFGPDHTCPGPRKLPFMGFLSSSTTRKEAKTTRPNKAHPSTSSSSSSSRWS 180

Query:   180 NAASSFRASAEAGMSKLSNEISQKLQIAKDGAXXXXXXXXXXXELCPQCGARFSSVTTLI 239
             N  SS    AEAG+S+L N+ISQKLQ +               E+CPQCGA+FSSVT+L+
Sbjct:   181 NLLSS----AEAGISRLGNDISQKLQFSSS-------KDNGIVEVCPQCGAKFSSVTSLV 229

Query:   240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTSRA 289
             EHVEK H+R+  Q    VTVDVCP+CS+GF DPV LV H+ERDH GTS+A
Sbjct:   230 EHVEKTHERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDHRGTSKA 279

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2103533 AT3G57480 "AT3G57480" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 147/255 (57%), Positives = 181/255 (70%)

Query:     1 MGTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC 60
             MGTP+FPDLGKHCS+  CKQIDFLPFTCD C +V+CLDHRSY +H CPK  R DVTVVIC
Sbjct:     1 MGTPEFPDLGKHCSVDYCKQIDFLPFTCDRCLQVYCLDHRSYMKHDCPKGNRGDVTVVIC 60

Query:    61 PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRD 120
             PLCAKGVRL PDE+P+ITWE HVN DCDPSNY+K  KK+KCPV  C+E+L FSNTIKCRD
Sbjct:    61 PLCAKGVRLNPDEDPNITWEKHVNTDCDPSNYEKAVKKKKCPVPRCRELLTFSNTIKCRD 120

Query:   121 CTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLN 180
             C++DHCLKHRF PDHSC GPKK ++ F+FM  L+ + KE P    + ++SS++W+S F  
Sbjct:   121 CSIDHCLKHRFGPDHSCSGPKKPESSFSFMGFLSTNTKEAP----ASSSSSSRWSSLF-- 174

Query:   181 AASSFRASAEAGMSKLSNEISQKLQIAK--DGAXXXXXXXXX-------XXELCPQCGAR 231
                   ASAEA +S+L N+ISQKLQ A   DG                   ++CP+C   
Sbjct:   175 ------ASAEASISRLGNDISQKLQFASGNDGNSEKTQERNGKQNCGKVTVDVCPKCSRG 228

Query:   232 FSSVTTLIEHVEKIH 246
             F     L++H++K H
Sbjct:   229 FRDPVDLLKHIDKDH 243

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2098313 PMZ [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 70/139 (50%), Positives = 83/139 (59%)

Query:     2 GTPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICP 61
             GT  FPDLG+HC  PDCK +DFLPFTCD C  VFCL+HRSY  H CPK++    TV IC 
Sbjct:     5 GTEAFPDLGEHCQDPDCKLLDFLPFTCDGCKLVFCLEHRSYKSHNCPKSDHGSRTVSICE 64

Query:    62 LCAKGVRLRPDENPHIT--WENHVNV-DCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKC 118
              C+  +     +   I    E H    DCDP+      KK  CPV+ CKEIL F+N + C
Sbjct:    65 TCSIAIETTGFDEKGIKSLLEKHERSGDCDPNK----KKKPTCPVKRCKEILTFANNLTC 120

Query:   119 RDCTVDHCLKHRFAPDHSC 137
             + C V  CLKHRF  DH C
Sbjct:   121 KYCGVKFCLKHRFPTDHVC 139

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|F1N761 ZFAND2B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 69/176 (39%), Positives = 93/176 (52%)

Query:     5 QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
             +FPDLG HCS P CK++DFLP  CD C  +FC DH +Y QH C  A + D+ V +CPLC 
Sbjct:     2 EFPDLGAHCSEPSCKRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCN 61

Query:    65 KGVRLRPDENPHITWENHVNVDC--DPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
               V +   E+P      H++ DC  DP+   +     KC   GC++  +   T  C  C 
Sbjct:    62 VPVPVARGESPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERAGCRQREMMKLT--CDRCG 119

Query:   123 VDHCLKHRFAPDHSCPGPKKLDT--GFAFMS---LLNRSRKEEPKPKQS-PATSST 172
              + C+KHR   DH C G     +  G A +S    L  S K  P P Q+ P++SST
Sbjct:   120 RNFCIKHRHPLDHDCSGEGHPTSRAGLAAISRAQTLASSTKTTPSPNQTLPSSSST 175

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1596 zfand2a "zinc finger, AN1-type domain 2A" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 65/196 (33%), Positives = 102/196 (52%)

Query:     5 QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
             +FPDLG+HCS   CK++DFLP  CD C ++FC DH +Y  H+C  + + DV V +CPLC 
Sbjct:     2 EFPDLGEHCSEKSCKRLDFLPMKCDACEEIFCKDHITYANHKCTSSYKKDVQVPVCPLCN 61

Query:    65 KGVRLRPDENPHITWENHVNVDC--DPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
               + +R  E P I    H++ DC  DP+   +     KC   GCK+  +   T  C  C 
Sbjct:    62 IPIPIRRGEMPDIKVGEHIDRDCKSDPAQRKRKIFTNKCSKGGCKQKEMIRVT--CDQCH 119

Query:   123 VDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLNAA 182
             +++CLKHR   DH C    K  +     +L+    + +     + A SST+ +S  ++  
Sbjct:   120 LNYCLKHRHPLDHDCKTDNKPVSKSGHAALM----RAQGSSSSNTAASSTRGSSRNMSNG 175

Query:   183 SSFRASAEAGMSKLSN 198
              +  A  ++  +  +N
Sbjct:   176 VTGNARPQSSSAPRTN 191

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310991 Zfand2a "zinc finger, AN1-type domain 2A" [Rattus norvegicus (taxid:10116)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 67/163 (41%), Positives = 93/163 (57%)

Query:     5 QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
             +FPDLGKHCS P CKQ+DFLP TCD C + FC DH SY+ H+CP A + DV V +CPLC 
Sbjct:     2 EFPDLGKHCSEPTCKQLDFLPITCDACKQDFCKDHFSYSGHKCPFAFKKDVQVPVCPLCN 61

Query:    65 KGVRLRPDENPHITWENHVNVDCD--PS-NYDKVTKKRKCPVRGC--KEILVFSNTIKCR 119
               + +R  + P +    H++ DC   P  N +KV   R C   GC  KE+L     + C 
Sbjct:    62 APIPVRRGDIPDVVVGEHMDRDCTFHPGRNRNKVFTHR-CSKEGCRKKEML----QLACA 116

Query:   120 DCTVDHCLKHRFAPDHSCP-GPKKLDTGFAFMSLLNRSRKEEP 161
              C  + C++HR   DH+C  G   +  G    S  +R+ +++P
Sbjct:   117 QCHGNFCIQHRHPLDHNCQAGSSSVSRG---RSSASRAAEQKP 156

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B4DEN4 ZFAND2B "cDNA FLJ60439, highly similar to AN1-type zinc finger protein 2B" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 72/212 (33%), Positives = 107/212 (50%)

Query:     5 QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
             +FPDLG HCS P C+++DFLP  CD C  +FC DH +Y QH C  A + D+ V +CPLC 
Sbjct:     2 EFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCN 61

Query:    65 KGVRLRPDENPHITWENHVNVDC--DPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
               V +   E P      H++ DC  DP+   +     KC   GC++  +   T  C  C+
Sbjct:    62 VPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERAGCRQREMMKLT--CERCS 119

Query:   123 VDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNR-----SRKEEPKPKQ------SPATSS 171
              + C+KHR   DH C G     T  A ++ ++R     S    P P Q      SP+ ++
Sbjct:   120 RNFCIKHRHPLDHDCSGEGH-PTSRAGLAAISRAQAVASTSTVPSPSQTMPSCTSPSRAT 178

Query:   172 TK---WTSSFLNAASSFRAS-AEAGMSKLSNE 199
             T+   WT+  + A  +   S AE G ++ + +
Sbjct:   179 TRSPSWTAPPVIALQNGLVSWAEVGWTETNTQ 210

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E7EV05 ZFAND2B "AN1-type zinc finger protein 2B" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 72/212 (33%), Positives = 107/212 (50%)

Query:     5 QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
             +FPDLG HCS P C+++DFLP  CD C  +FC DH +Y QH C  A + D+ V +CPLC 
Sbjct:     2 EFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCN 61

Query:    65 KGVRLRPDENPHITWENHVNVDC--DPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
               V +   E P      H++ DC  DP+   +     KC   GC++  +   T  C  C+
Sbjct:    62 VPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERAGCRQREMMKLT--CERCS 119

Query:   123 VDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNR-----SRKEEPKPKQ------SPATSS 171
              + C+KHR   DH C G     T  A ++ ++R     S    P P Q      SP+ ++
Sbjct:   120 RNFCIKHRHPLDHDCSGEGH-PTSRAGLAAISRAQAVASTSTVPSPSQTMPSCTSPSRAT 178

Query:   172 TK---WTSSFLNAASSFRAS-AEAGMSKLSNE 199
             T+   WT+  + A  +   S AE G ++ + +
Sbjct:   179 TRSPSWTAPPVIALQNGLVSWAEVGWTETNTQ 210

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2140729 Zfand2a "zinc finger, AN1-type domain 2A" [Mus musculus (taxid:10090)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 68/164 (41%), Positives = 90/164 (54%)

Query:     5 QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
             +FPDLGKHCS P CKQ+DFLP TCD C + FC DH SY  H+CP A + DV V +CPLC 
Sbjct:     2 EFPDLGKHCSEPTCKQLDFLPITCDACKQDFCKDHFSYVGHKCPFAFKKDVQVPVCPLCN 61

Query:    65 KGVRLRPDENPHITWENHVNVDCD--PS-NYDKVTKKRKCPVRGC--KEILVFSNTIKCR 119
               + ++  E P +    H++ DC   P  N +KV   R C   GC  KE+L     + C 
Sbjct:    62 APIPVKRGEIPDVVVGEHMDRDCTFHPGRNRNKVFTHR-CSKEGCRKKEML----QLACA 116

Query:   120 DCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKP 163
              C  + C++HR   DH+C    +  +  A     + SR  E KP
Sbjct:   117 QCHGNFCIQHRHPLDHNC----QAGSSSASRGRTSTSRAAEQKP 156

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NRY4 ZFAND2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 67/179 (37%), Positives = 94/179 (52%)

Query:     5 QFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCA 64
             +FPDLGKHCS   CKQ+DFLPF CD C + FC DH +   H+CP A + DV V +CPLC 
Sbjct:     2 EFPDLGKHCSEKTCKQLDFLPFKCDACKQDFCKDHFTCAAHKCPFAFKKDVHVPVCPLCN 61

Query:    65 KGVRLRPDENPHITWENHVNVDCD--PSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCT 122
               V ++  E P +    H++ DC+  P   +K+   R C   GCK+  +    + C  C 
Sbjct:    62 NPVPVKKGEIPDVVVGEHIDRDCNYLPGKKEKIFMYR-CSKEGCKKKEMLQ--VACDQCR 118

Query:   123 VDHCLKHRFAPDHSCP-GPKKLDT-GFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFL 179
                C++HR   DHSC  G + +   G+A       +R  E +P  +    ST W +  L
Sbjct:   119 GSFCIQHRHPLDHSCKHGSRPISVAGYA------AARASESEPSGALHRLSTIWRAQRL 171

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0D5B9	SAP16_ORYSJ	No assigned EC number	0.6517	1.0	0.9965	yes	no
Q8VZ42	SAP11_ARATH	No assigned EC number	0.6413	0.9619	0.9964	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VI0432 hypothetical protein (292 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam01428	43	pfam01428, zf-AN1, AN1-like Zinc finger	4e-12
pfam01428	43	pfam01428, zf-AN1, AN1-like Zinc finger	1e-05

>gnl|CDD|201791 pfam01428, zf-AN1, AN1-like Zinc finger

 Score = 59.4 bits (144), Expect = 4e-12
 Identities = 19/40 (47%), Positives = 21/40 (52%)

Query: 13 CSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER 52
          CS   CK+ DFLPF C  C   FCL HR    H CP   +
Sbjct: 1  CSFKGCKKKDFLPFKCRFCGGTFCLKHRLPEDHNCPGLYK 40

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Length = 43

>gnl|CDD|201791 pfam01428, zf-AN1, AN1-like Zinc finger

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 101 CPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK 142
           C  +GCK+        KCR C    CLKHR   DH+CPG  K
Sbjct: 1   CSFKGCKKKD--FLPFKCRFCGGTFCLKHRLPEDHNCPGLYK 40

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG3183	250	consensus Predicted Zn-finger protein [General fun	100.0
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.79
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.69
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.37
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.14
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.13
PF01428	43	zf-AN1: AN1-like Zinc finger; InterPro: IPR000058	99.08
KOG3608	467	consensus Zn finger proteins [General function pre	98.99
KOG3576	267	consensus Ovo and related transcription factors [T	98.97
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.89
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	98.85
KOG3608	467	consensus Zn finger proteins [General function pre	98.82
PHA02768	55	hypothetical protein; Provisional	98.77
KOG3576	267	consensus Ovo and related transcription factors [T	98.56
PHA00733	128	hypothetical protein	98.54
PF01428	43	zf-AN1: AN1-like Zinc finger; InterPro: IPR000058	98.34
KOG3993	500	consensus Transcription factor (contains Zn finger	98.18
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.16
PLN03086	567	PRLI-interacting factor K; Provisional	98.07
PHA00732	79	hypothetical protein	98.03
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.97
PHA00616	44	hypothetical protein	97.91
PLN03086	567	PRLI-interacting factor K; Provisional	97.89
PHA00616	44	hypothetical protein	97.62
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	97.59
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.56
PHA02768	55	hypothetical protein; Provisional	97.47
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.32
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.29
KOG3993	500	consensus Transcription factor (contains Zn finger	97.24
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.21
PHA00733	128	hypothetical protein	97.0
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.51
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.5
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.35
smart00355	26	ZnF_C2H2 zinc finger.	96.25
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.24
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.12
COG3582	162	Predicted nucleic acid binding protein containing	95.84
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	95.83
smart00355	26	ZnF_C2H2 zinc finger.	95.56
PHA00732	79	hypothetical protein	95.11
KOG3183	250	consensus Predicted Zn-finger protein [General fun	95.03
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.93
PRK04860	160	hypothetical protein; Provisional	94.87
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.39
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.35
COG5189	423	SFP1 Putative transcriptional repressor regulating	93.7
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.1
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.81
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.19
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	90.66
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	90.6
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	90.41
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	90.32
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.1
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	90.02
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	89.88
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	89.85
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	89.75
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	89.55
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	89.1
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	88.96
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	88.57
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	88.04
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	86.8
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	86.58
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	84.68
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	84.61
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	84.15
COG5048	467	FOG: Zn-finger [General function prediction only]	83.71
PHA00626	59	hypothetical protein	82.89
KOG1146	1406	consensus Homeobox protein [General function predi	82.87
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	82.78
PF04236	63	Transp_Tc5_C: Tc5 transposase C-terminal domain; I	82.46
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	82.35
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	82.13
PRK04023	1121	DNA polymerase II large subunit; Validated	80.82
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	80.79
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	80.76
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.35

>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]

Probab=100.00  E-value=6.6e-34  Score=239.73  Aligned_cols=136  Identities=53%  Similarity=1.069  Sum_probs=129.6

Q ss_pred             CCCcCcccCcCCcCCCCCcccccccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCccccCCCCCCccccccc
Q 023000            3 TPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENH   82 (289)
Q Consensus         3 ~~~~~~~g~~C~~~~C~~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~~~~~~~~~~~~~H   82 (289)
                      +|||||||+||++++|+|||||||+|+.|+..||++|+.++.|.|+.....++++.+||+|.++++...+..++..|..|
T Consensus         1 ~~efpDlGkHCs~~~CkqlDFLPf~Cd~C~~~FC~eHrsye~H~Cp~~~~~~~~v~icp~cs~pv~~~~de~~~~~v~~h   80 (250)
T KOG3183|consen    1 TMEFPDLGKHCSVPYCKQLDFLPFKCDGCSGIFCLEHRSYESHHCPKGLRIDVQVPICPLCSKPVPTKKDEAPDKVVEPH   80 (250)
T ss_pred             CCcccccccccCcchhhhccccceeeCCccchhhhccchHhhcCCCcccccceeecccCCCCCCCCCCCCcchhhhhchh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC--CCcccCcccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCC
Q 023000           83 VNVDCDP--SNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCP  138 (289)
Q Consensus        83 ~~~~c~~--~~~~~~~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~  138 (289)
                      +...|++  ..++...+.++|+..+|++++.+.+.++|.+|+..||++||++.+|.|.
T Consensus        81 ~~~dC~~~~~~~~~k~~t~kc~~~~c~k~~~~~~~~~c~~c~~~~c~khr~~~dhsc~  138 (250)
T KOG3183|consen   81 ISNDCDRHPEQKKRKVFTNKCPVPRCKKTLTLANKITCSKCGRNFCLKHRHPLDHSCN  138 (250)
T ss_pred             hccccccCchhhhcccccccCCchhhHHHHHHHHhhhhHhhcchhhhhccCCCCchhh
Confidence            9999997  4555666788899999999999888899999999999999999999998

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.79  E-value=8.9e-20  Score=158.07  Aligned_cols=55  Identities=27%  Similarity=0.572  Sum_probs=52.2

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHh
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVER  281 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~  281 (289)
                      .|||||.|+.|+|+|+..++|..||+ +|.+.|        +|+|..|+|.|+..+.|.+|...
T Consensus       211 TGEKPF~C~hC~kAFADRSNLRAHmQ-THS~~K--------~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  211 TGEKPFSCPHCGKAFADRSNLRAHMQ-THSDVK--------KHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cCCCCccCCcccchhcchHHHHHHHH-hhcCCc--------cccCcchhhHHHHHHHHHHhhhh
Confidence            37799999999999999999999999 999999        99999999999999999999853

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.69  E-value=2.7e-17  Score=142.70  Aligned_cols=55  Identities=27%  Similarity=0.482  Sum_probs=52.8

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      -|++|.+|||.|.+.|-|+.|+| +|+|||        ||.|+.|+|+|.+++||+.||++|.+
T Consensus       186 l~c~C~iCGKaFSRPWLLQGHiR-THTGEK--------PF~C~hC~kAFADRSNLRAHmQTHS~  240 (279)
T KOG2462|consen  186 LPCECGICGKAFSRPWLLQGHIR-THTGEK--------PFSCPHCGKAFADRSNLRAHMQTHSD  240 (279)
T ss_pred             CCcccccccccccchHHhhcccc-cccCCC--------CccCCcccchhcchHHHHHHHHhhcC
Confidence            48999999999999999999999 999999        99999999999999999999999864

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.37  E-value=1.1e-12  Score=128.08  Aligned_cols=54  Identities=20%  Similarity=0.314  Sum_probs=51.3

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhc
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      .|.+|-+|-+..+-++.|+.|+| +|+||+        ||+|.+||+.|.++.+|+.||.+|-
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyr-tHtGER--------PFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYR-THTGER--------PFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             Cccceeeeeecccchhhhhhhhh-cccCcC--------ccccccccchhccccchhhcccccc
Confidence            57899999999999999999999 999999        9999999999999999999997763

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.14  E-value=1.4e-10  Score=113.57  Aligned_cols=55  Identities=25%  Similarity=0.417  Sum_probs=52.0

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ...|.+||+.|...+.|..|++ +|+++|        ||.|..|++.|..+.+|+.||.+|+..
T Consensus       879 ~h~C~vCgk~FsSSsALqiH~r-THtg~K--------PF~C~fC~~aFttrgnLKvHMgtH~w~  933 (958)
T KOG1074|consen  879 AHVCNVCGKQFSSSAALEIHMR-THTGPK--------PFFCHFCEEAFTTRGNLKVHMGTHMWV  933 (958)
T ss_pred             hhhhccchhcccchHHHHHhhh-cCCCCC--------Cccchhhhhhhhhhhhhhhhhcccccc
Confidence            3779999999999999999999 999999        999999999999999999999988754

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.13  E-value=9.5e-12  Score=119.90  Aligned_cols=53  Identities=23%  Similarity=0.399  Sum_probs=51.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHH
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHV  279 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~  279 (289)
                      +|.+||+|.+|.|+|+.+.+|+.|+| .|.|||        ||+|+.|+|+|+.......||
T Consensus       918 sGqRPyqC~iCkKAFKHKHHLtEHkR-LHSGEK--------PfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  918 SGQRPYQCIICKKAFKHKHHLTEHKR-LHSGEK--------PFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             cCCCCcccchhhHhhhhhhhhhhhhh-hccCCC--------cchhhhhhhhcccccchHhhh
Confidence            37799999999999999999999999 999999        999999999999999999999

>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.08  E-value=5.5e-11  Score=76.30  Aligned_cols=40  Identities=53%  Similarity=1.217  Sum_probs=31.0

Q ss_pred             CCcCCCCCcccccccCCccCcccccCCCccccccCCCCCC
Q 023000           13 CSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER   52 (289)
Q Consensus        13 C~~~~C~~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~   52 (289)
                      |++++|+++|||||+|+.|++.||.+|+.++.|.|.....
T Consensus         1 C~~~~C~~~~~~~~~C~~C~~~FC~~Hr~~e~H~C~~~~~   40 (43)
T PF01428_consen    1 CSFPGCKKKDFLPFKCKHCGKSFCLKHRLPEDHNCSKLQK   40 (43)
T ss_dssp             -SSTTT--BCTSHEE-TTTS-EE-TTTHSTTTCT-SSTTS
T ss_pred             CccCcCcCccCCCeECCCCCcccCccccCccccCCcchhh
Confidence            7899999999999999999999999999999999987754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.99  E-value=6.1e-11  Score=106.15  Aligned_cols=82  Identities=20%  Similarity=0.347  Sum_probs=53.5

Q ss_pred             cCcccccCCCccccccCCCCCCCcceeecCCCCCCccccCCCCCCccccccccccCCCCCCcccCcccCCCCCCCCccee
Q 023000           31 CHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEIL  110 (289)
Q Consensus        31 C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~~~~~~~~~~~~~H~~~~c~~~~~~~~~~~~~C~~~~ck~~~  110 (289)
                      |.+.| .+...+..|.-.+.+   ++++-||.||..|+..      ..|-.|+++                      +.+
T Consensus       185 Ct~~~-~~k~~LreH~r~Hs~---eKvvACp~Cg~~F~~~------tkl~DH~rR----------------------qt~  232 (467)
T KOG3608|consen  185 CTKHM-GNKYRLREHIRTHSN---EKVVACPHCGELFRTK------TKLFDHLRR----------------------QTE  232 (467)
T ss_pred             hhhhh-ccHHHHHHHHHhcCC---CeEEecchHHHHhccc------cHHHHHHHh----------------------hhh
Confidence            66666 333455666655554   4678999999999743      344445543                      223


Q ss_pred             eecccccCCccccccccc-------CcCCCCCCCCCCCCCC
Q 023000          111 VFSNTIKCRDCTVDHCLK-------HRFAPDHSCPGPKKLD  144 (289)
Q Consensus       111 ~~~~~~~C~~C~~~fc~~-------hr~~~~h~C~~~~~~~  144 (289)
                      ++.|+|.|.+|.|.|..+       -|+-..|.|+.|...-
T Consensus       233 l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc  273 (467)
T KOG3608|consen  233 LNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTC  273 (467)
T ss_pred             hcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCC
Confidence            444699999999999644       2666778888776633

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.97  E-value=5.4e-11  Score=99.14  Aligned_cols=55  Identities=27%  Similarity=0.574  Sum_probs=38.2

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      +.|.|..||+.|...-.|++|+| +|+|.+        ||+|..|+|.|.++-.|..|++..|+
T Consensus       144 kr~lct~cgkgfndtfdlkrh~r-thtgvr--------pykc~~c~kaftqrcsleshl~kvhg  198 (267)
T KOG3576|consen  144 KRHLCTFCGKGFNDTFDLKRHTR-THTGVR--------PYKCSLCEKAFTQRCSLESHLKKVHG  198 (267)
T ss_pred             HHHHHhhccCcccchhhhhhhhc-cccCcc--------ccchhhhhHHHHhhccHHHHHHHHcC
Confidence            45667777777777777777776 777777        77777777777777777777665554

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.89  E-value=3.7e-10  Score=109.14  Aligned_cols=53  Identities=26%  Similarity=0.495  Sum_probs=50.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHH
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      ..+.|+|.+|||+|+.+.+|+.|+| +|.|||        ||.|+.|+|+|+.......||.
T Consensus       278 ~lRKFKCtECgKAFKfKHHLKEHlR-IHSGEK--------PfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  278 LLRKFKCTECGKAFKFKHHLKEHLR-IHSGEK--------PFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             hhccccccccchhhhhHHHHHhhhe-eecCCC--------CcCCcccccccccCCccccccc
Confidence            4478999999999999999999999 999999        9999999999999999999983

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=98.85  E-value=1.6e-09  Score=67.72  Aligned_cols=34  Identities=35%  Similarity=0.802  Sum_probs=32.1

Q ss_pred             CCCCcccc-cccCCccCcccccCCCccccccCCCC
Q 023000           17 DCKQIDFL-PFTCDCCHKVFCLDHRSYNQHQCPKA   50 (289)
Q Consensus        17 ~C~~~dfL-Pf~C~~C~k~Fc~~h~~~~~H~c~~~   50 (289)
                      .|+++||| ||+|+.|++.||.+|+.++.|.|...
T Consensus         3 ~C~~~~~l~~f~C~~C~~~FC~~HR~~e~H~C~~~   37 (39)
T smart00154        3 FCRKKVGLTGFKCRHCGNLFCGEHRLPEDHDCPGD   37 (39)
T ss_pred             ccCCcccccCeECCccCCccccccCCccccCCccc
Confidence            59999999 99999999999999999999999764

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.82  E-value=1.2e-09  Score=97.91  Aligned_cols=208  Identities=18%  Similarity=0.326  Sum_probs=130.6

Q ss_pred             cCcccC-cCCcCCCCCccccc--ccCC--ccCcccccC---------CCccccccCCCCCCCcceeecCCC--CCCcccc
Q 023000            6 FPDLGK-HCSLPDCKQIDFLP--FTCD--CCHKVFCLD---------HRSYNQHQCPKAERHDVTVVICPL--CAKGVRL   69 (289)
Q Consensus         6 ~~~~g~-~C~~~~C~~~dfLP--f~C~--~C~k~Fc~~---------h~~~~~H~c~~~~~~~~~~~~Cp~--C~k~~~~   69 (289)
                      -+|||+ -|.++.|+.+--||  |.|.  .|+..|-+-         |...-.+.....++...-++.|.-  |-+.+  
T Consensus       112 ~~dig~c~~~f~~~~~ip~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~--  189 (467)
T KOG3608|consen  112 HPDIGACTAPFRLMEKIPALGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHM--  189 (467)
T ss_pred             CCCcCcccCCcchhhccccchhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhh--
Confidence            356776 57888899988888  8885  599999532         333223332333433334455653  55544  


Q ss_pred             CCCCCCccccccccccCCCCCCcccCcccCCCCCCCCcceeeecccccCCccccccccc-----C------cCCCCCCCC
Q 023000           70 RPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLK-----H------RFAPDHSCP  138 (289)
Q Consensus        70 ~~~~~~~~~~~~H~~~~c~~~~~~~~~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~-----h------r~~~~h~C~  138 (289)
                          +....|.+|++++.+.+                        -+.|+.||..|..+     |      -...+|+|.
T Consensus       190 ----~~k~~LreH~r~Hs~eK------------------------vvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~  241 (467)
T KOG3608|consen  190 ----GNKYRLREHIRTHSNEK------------------------VVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCA  241 (467)
T ss_pred             ----ccHHHHHHHHHhcCCCe------------------------EEecchHHHHhccccHHHHHHHhhhhhcCCchHHH
Confidence                34566788988877654                        45699999999744     2      124589999


Q ss_pred             CCCCCCCccchhhhhc-cCCCCCCCCCCCCCCCCCCccccccccchhhhhhhhcccCccchhhhhhhhhhcCCCCCCCCC
Q 023000          139 GPKKLDTGFAFMSLLN-RSRKEEPKPKQSPATSSTKWTSSFLNAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSS  217 (289)
Q Consensus       139 ~~~~~~~~~~~~a~l~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (289)
                      .|-|-+.....+..+. |+...+..+-.+-              .-..+           +........ .        .
T Consensus       242 ~C~KrFaTeklL~~Hv~rHvn~ykCplCdm--------------tc~~~-----------ssL~~H~r~-r--------H  287 (467)
T KOG3608|consen  242 QCFKRFATEKLLKSHVVRHVNCYKCPLCDM--------------TCSSA-----------SSLTTHIRY-R--------H  287 (467)
T ss_pred             HHHHHHhHHHHHHHHHHHhhhccccccccc--------------CCCCh-----------HHHHHHHHh-h--------h
Confidence            8877665544443333 3333333332211              00000           001111111 0        1


Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHHHhhcCCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +..|||+|+.|+++|...+.|.+|+. +|+ +.        .|.|..  |...|.+..+|++|++.+|.|.+
T Consensus       288 s~dkpfKCd~Cd~~c~~esdL~kH~~-~HS-~~--------~y~C~h~~C~~s~r~~~q~~~H~~evhEg~n  349 (467)
T KOG3608|consen  288 SKDKPFKCDECDTRCVRESDLAKHVQ-VHS-KT--------VYQCEHPDCHYSVRTYTQMRRHFLEVHEGNN  349 (467)
T ss_pred             ccCCCccccchhhhhccHHHHHHHHH-hcc-cc--------ceecCCCCCcHHHHHHHHHHHHHHHhccCCC
Confidence            12389999999999999999999988 888 44        699977  99999999999999988886643

>PHA02768 hypothetical protein; Provisional

Probab=98.77  E-value=2.9e-09  Score=70.99  Aligned_cols=45  Identities=20%  Similarity=0.361  Sum_probs=41.4

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHH
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVE  277 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~  277 (289)
                      -|+|++||+.|...++|..|++ +|+  +        +|+|..|++.|.+.+.|+.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r-~H~--k--------~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLR-KHN--T--------NLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHH-hcC--C--------cccCCcccceecccceeEE
Confidence            4899999999999999999999 898  7        8999999999999888753

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.56  E-value=9.5e-08  Score=79.96  Aligned_cols=59  Identities=25%  Similarity=0.523  Sum_probs=54.6

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ++...|.|.+|+|.|.....|.+|+. -|...+        .|.|..|||+|.....|.+|+|+|+|-
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~k-ch~~vk--------r~lct~cgkgfndtfdlkrh~rthtgv  171 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLK-CHSDVK--------RHLCTFCGKGFNDTFDLKRHTRTHTGV  171 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhh-hccHHH--------HHHHhhccCcccchhhhhhhhccccCc
Confidence            34568999999999999999999999 999988        899999999999999999999999874

>PHA00733 hypothetical protein

Probab=98.54  E-value=1.2e-07  Score=75.50  Aligned_cols=54  Identities=30%  Similarity=0.615  Sum_probs=49.5

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ++||.|+.||+.|.....|..|++ .|  +.        +|.|++|++.|.....|.+|+...|+
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r-~h--~~--------~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIR-YT--EH--------SKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHh-cC--Cc--------CccCCCCCCccCCHHHHHHHHHHhcC
Confidence            479999999999999999999988 66  46        89999999999999999999988775

>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.34  E-value=2.7e-07  Score=59.06  Aligned_cols=39  Identities=38%  Similarity=0.943  Sum_probs=28.0

Q ss_pred             CCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCC
Q 023000          101 CPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPK  141 (289)
Q Consensus       101 C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~  141 (289)
                      |++.+|++.+..  ||+|+.|++.||++||++..|.|....
T Consensus         1 C~~~~C~~~~~~--~~~C~~C~~~FC~~Hr~~e~H~C~~~~   39 (43)
T PF01428_consen    1 CSFPGCKKKDFL--PFKCKHCGKSFCLKHRLPEDHNCSKLQ   39 (43)
T ss_dssp             -SSTTT--BCTS--HEE-TTTS-EE-TTTHSTTTCT-SSTT
T ss_pred             CccCcCcCccCC--CeECCCCCcccCccccCccccCCcchh
Confidence            677889988763  999999999999999999999998543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.18  E-value=2.9e-07  Score=84.62  Aligned_cols=53  Identities=26%  Similarity=0.652  Sum_probs=46.2

Q ss_pred             ccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCccccCCCCCCccccccccc
Q 023000           26 FTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVN   84 (289)
Q Consensus        26 f~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~~~~~~~~~~~~~H~~   84 (289)
                      |.|..|...| .|-+.+..|+|+-...-+   |.||+|+|.|....++-.|.+|  |.-
T Consensus       268 yiCqLCK~kY-eD~F~LAQHrC~RIV~vE---YrCPEC~KVFsCPANLASHRRW--HKP  320 (500)
T KOG3993|consen  268 YICQLCKEKY-EDAFALAQHRCPRIVHVE---YRCPECDKVFSCPANLASHRRW--HKP  320 (500)
T ss_pred             HHHHHHHHhh-hhHHHHhhccCCeeEEee---ecCCcccccccCchhhhhhhcc--cCC
Confidence            8899999999 788889999998776543   8999999999999999999998  643

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.16  E-value=1.1e-06  Score=50.00  Aligned_cols=26  Identities=27%  Similarity=0.613  Sum_probs=23.9

Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCcccccccCcccCC
Q 023000          237 TLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCD  271 (289)
Q Consensus       237 ~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~  271 (289)
                      +|.+|++ +|++++        ||.|++|++.|.+
T Consensus         1 ~l~~H~~-~H~~~k--------~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMR-THTGEK--------PYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHH-HHSSSS--------SEEESSSSEEESS
T ss_pred             CHHHHhh-hcCCCC--------CCCCCCCcCeeCc
Confidence            5889999 999999        9999999999974

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.07  E-value=3.9e-06  Score=81.58  Aligned_cols=55  Identities=20%  Similarity=0.254  Sum_probs=43.7

Q ss_pred             CCCccccCccCcccC----------ChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          219 TGGTELCPQCGARFS----------SVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~----------~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      +++|+.|+.|++.|.          ....|..|.. +. |.+        ++.|..||+.|..+. |..|+...|.
T Consensus       501 p~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~-~C-G~r--------t~~C~~Cgk~Vrlrd-m~~H~~~~h~  565 (567)
T PLN03086        501 PLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHES-IC-GSR--------TAPCDSCGRSVMLKE-MDIHQIAVHQ  565 (567)
T ss_pred             CCCceeCCCCCCccccCccccchhhhhhhHHHHHH-hc-CCc--------ceEccccCCeeeehh-HHHHHHHhhc
Confidence            458999999999995          2458999977 54 888        999999999888655 6788765554

>PHA00732 hypothetical protein

Probab=98.03  E-value=3.6e-06  Score=61.14  Aligned_cols=46  Identities=26%  Similarity=0.591  Sum_probs=38.8

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHh
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVER  281 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~  281 (289)
                      ||.|+.||+.|.....|..|++..|.           ++.|+.|++.|.   .|..|+++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~-----------~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT-----------LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC-----------CCccCCCCCEeC---Chhhhhcc
Confidence            68999999999999999999872243           578999999998   58888754

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.97  E-value=1.2e-05  Score=54.03  Aligned_cols=53  Identities=34%  Similarity=0.640  Sum_probs=42.7

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      .|.||.|++. .....|..|+...|..+.       ..+.||+|...+.  .+|..|+..+|+
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~-------~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSES-------KNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCC-------CCccCCCchhhhh--hHHHHHHHHhcC
Confidence            4899999995 556789999886777653       1699999998755  499999988774

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=97.91  E-value=5.2e-06  Score=52.80  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=30.2

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      ||+|+.||+.|...+.|.+|++ .|+|++        ++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r-~~hg~~--------~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLL-SVHKQN--------KLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHH-HhcCCC--------ccceeE
Confidence            6899999999999999999998 899888        888764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.89  E-value=3.8e-05  Score=74.77  Aligned_cols=51  Identities=18%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCC----------hhhHHHHHHhh
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCD----------PVALVEHVERD  282 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~----------~~~L~~H~~~h  282 (289)
                      +|+.|+ ||+.+ ....|..|++ +|..++        |+.|+.|++.|..          ...|..|..+.
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~-thCp~K--------pi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQA-STCPLR--------LITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhh-ccCCCC--------ceeCCCCCCccccCccccchhhhhhhHHHHHHhc
Confidence            589999 99765 6689999988 899999        9999999999952          35799998764

>PHA00616 hypothetical protein

Probab=97.62  E-value=2.9e-05  Score=49.40  Aligned_cols=28  Identities=21%  Similarity=0.399  Sum_probs=26.2

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ||+|+.||+.|....+|+.|++.||+..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~   28 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQN   28 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCC
Confidence            6999999999999999999999999864

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=97.59  E-value=3.6e-05  Score=48.06  Aligned_cols=33  Identities=39%  Similarity=0.977  Sum_probs=27.1

Q ss_pred             CcceeeecccccCCcccccccccCcCCCCCCCCC
Q 023000          106 CKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPG  139 (289)
Q Consensus       106 ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~  139 (289)
                      |++..... ||+|+.|++.||++||....|.|..
T Consensus         4 C~~~~~l~-~f~C~~C~~~FC~~HR~~e~H~C~~   36 (39)
T smart00154        4 CRKKVGLT-GFKCRHCGNLFCGEHRLPEDHDCPG   36 (39)
T ss_pred             cCCccccc-CeECCccCCccccccCCccccCCcc
Confidence            44443322 9999999999999999999999974

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.56  E-value=4.1e-05  Score=41.88  Aligned_cols=22  Identities=32%  Similarity=0.718  Sum_probs=13.7

Q ss_pred             ccccccCcccCChhhHHHHHHh
Q 023000          260 DVCPKCSQGFCDPVALVEHVER  281 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~~  281 (289)
                      |.|++|++.|.++..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA02768 hypothetical protein; Provisional

Probab=97.47  E-value=6.2e-05  Score=50.30  Aligned_cols=25  Identities=16%  Similarity=0.526  Sum_probs=24.0

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      -|+|+.||+.|++.++|..|+++|+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC
Confidence            5999999999999999999999998

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.32  E-value=0.00013  Score=39.80  Aligned_cols=24  Identities=29%  Similarity=0.645  Sum_probs=15.4

Q ss_pred             ccccccCcccCChhhHHHHHHhhc
Q 023000          260 DVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      |.|++|++.|.+...|..|+++||
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            467777777777777777776654

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.29  E-value=0.00011  Score=41.81  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=17.0

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||+|..|++.|.....|..|++.|+.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            46666777777777777777665543

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.24  E-value=0.00015  Score=67.04  Aligned_cols=62  Identities=23%  Similarity=0.387  Sum_probs=48.6

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcC--------CCCC-CCC----------------CCCCcccccccCcccCChhhHH
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHD--------RSGN-QAR----------------PKVTVDVCPKCSQGFCDPVALV  276 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~--------~~k~-~~~----------------~~~~p~~C~~C~k~F~~~~~L~  276 (289)
                      -|.|++|+|.|+-..+|..|.| -|.        +..+ ...                +..+.|.|.+|+|.|.+...|+
T Consensus       295 EYrCPEC~KVFsCPANLASHRR-WHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLr  373 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRR-WHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLR  373 (500)
T ss_pred             eecCCcccccccCchhhhhhhc-ccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHH
Confidence            4899999999999999999977 452        1111 000                1245799999999999999999


Q ss_pred             HHHHhhcC
Q 023000          277 EHVERDHG  284 (289)
Q Consensus       277 ~H~~~hh~  284 (289)
                      .|+.+|+.
T Consensus       374 KHqlthq~  381 (500)
T KOG3993|consen  374 KHQLTHQR  381 (500)
T ss_pred             HhHHhhhc
Confidence            99888874

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.21  E-value=0.00021  Score=38.98  Aligned_cols=23  Identities=43%  Similarity=0.804  Sum_probs=21.2

Q ss_pred             cccCccCcccCChHHHHHHHHhhc
Q 023000          223 ELCPQCGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~~~h  246 (289)
                      |.|+.|++.|.....|.+|++ .|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~-~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR-RH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH-HH
T ss_pred             CCCCCCCCccCCHHHHHHHHh-HC
Confidence            689999999999999999998 54

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00733 hypothetical protein

Probab=97.00  E-value=0.00035  Score=55.58  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             CCccccCccCcccCChHHHHHH--HH--hhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhh
Q 023000          220 GGTELCPQCGARFSSVTTLIEH--VE--KIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H--~~--~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      .+++.|.+|.+.|.....|..+  ++  ..+.+.+        ||.|+.|++.|....+|..|++.+
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~k--------Py~C~~Cgk~Fss~s~L~~H~r~h   96 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVS--------PYVCPLCLMPFSSSVSLKQHIRYT   96 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCC--------CccCCCCCCcCCCHHHHHHHHhcC
Confidence            4789999999999888777766  22  0223466        999999999999999999999864

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.51  E-value=0.0016  Score=36.87  Aligned_cols=25  Identities=40%  Similarity=0.662  Sum_probs=22.8

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      ||+|..|++.|.....|..|++ .|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~-~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR-SHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC-TTT
T ss_pred             CCCCCccCCccCChhHHHHHhH-Hhc
Confidence            6899999999999999999987 664

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.50  E-value=0.0008  Score=60.25  Aligned_cols=61  Identities=20%  Similarity=0.336  Sum_probs=45.9

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCC----CCC------CCCCCCcccccccCcccCChhhHHHHH
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRS----GNQ------ARPKVTVDVCPKCSQGFCDPVALVEHV  279 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~----k~~------~~~~~~p~~C~~C~k~F~~~~~L~~H~  279 (289)
                      ++|||+|++  |.|+|+..-.|+-|+.--|...    .|.      -.+..+||.|++|+|++.....|+.|.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            359999987  9999999999999965223111    000      012456999999999999999999887

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.35  E-value=0.003  Score=34.22  Aligned_cols=23  Identities=39%  Similarity=0.791  Sum_probs=19.1

Q ss_pred             cccCccCcccCChHHHHHHHHhhc
Q 023000          223 ELCPQCGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~~~h  246 (289)
                      |.|++|++.|.....|..|++ .|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~-~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR-TH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH-HH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH-hh
Confidence            689999999999999999998 54

...

>smart00355 ZnF_C2H2 zinc finger

Probab=96.25  E-value=0.0042  Score=34.09  Aligned_cols=23  Identities=35%  Similarity=0.655  Sum_probs=13.1

Q ss_pred             ccccccCcccCChhhHHHHHHhh
Q 023000          260 DVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            34555666666666666665533

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.24  E-value=0.0024  Score=47.64  Aligned_cols=59  Identities=36%  Similarity=0.569  Sum_probs=21.1

Q ss_pred             ccCccCcccCChHHHHHHHHhhcCCCCCC-------CC------CCCC-cccccccCcccCChhhHHHHHHhh
Q 023000          224 LCPQCGARFSSVTTLIEHVEKIHDRSGNQ-------AR------PKVT-VDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       224 ~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~-------~~------~~~~-p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      +|..|+..|.....|..|+...|.-..+.       ..      ..+. .+.|.+|++.|.....|..||+.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            58999999999999999997556422110       00      0122 589999999999999999999864

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.12  E-value=0.0025  Score=41.65  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=17.4

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      |-.|++|+..+++..+|++|++++|+
T Consensus        24 PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             CCCCCcchhhccchhhHHHHHHHHhc
Confidence            77788888888888888888877765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG3582 Predicted nucleic acid binding protein containing the AN1-type Zn-finger [General function prediction only]

Probab=95.84  E-value=0.01  Score=48.76  Aligned_cols=122  Identities=18%  Similarity=0.160  Sum_probs=67.1

Q ss_pred             CCCCcccccccCCccCcccccCCCccccccCCCC------CC-CcceeecCCCCCCccccC-CCCCCccccccccccCCC
Q 023000           17 DCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKA------ER-HDVTVVICPLCAKGVRLR-PDENPHITWENHVNVDCD   88 (289)
Q Consensus        17 ~C~~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~------~~-~~~~~~~Cp~C~k~~~~~-~~~~~~~~~~~H~~~~c~   88 (289)
                      .|-..-=||++|+.|.|.|+.++...--+.+.-.      .. ....++++-.|.-.+... ++.......++=++   .
T Consensus         5 s~~~~~~lP~r~~~~~kv~s~~~~~~~~~~f~~~i~~~~r~~i~k~~~~~~~~~~p~i~~~~~~~~~~~~~k~s~~---~   81 (162)
T COG3582           5 SRVSETRLPSRGNITAKVSSTDNSLTLFSPFKLFIQLCDRKKIKKPDPGQAMKCLPLISSAVSNPSNTDTPKRSTR---V   81 (162)
T ss_pred             ccceeccCCccccceeeeccCccccccccccchhhhhhhhhccccCCCcchhhhcceEEEEeeccccccCcccccc---c
Confidence            3445556999999999999999887777766553      11 112344455454444321 11111111111110   0


Q ss_pred             CCCcccCccc---CCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCCC
Q 023000           89 PSNYDKVTKK---RKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        89 ~~~~~~~~~~---~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      +.+.......   ..|....|.-+.... +++|+.|+-.||..|+++..|.|.....
T Consensus        82 ~~~~~~~~~~~~t~~~a~~~~~g~~s~l-~~~c~~c~g~fc~~h~lp~nhdc~~L~s  137 (162)
T COG3582          82 PLNGPFDSGKGITDRCATPQCTGKGSTL-AGKCNYCTGYFCAEHRLPENHDCNGLGS  137 (162)
T ss_pred             ccccccccccccceeeecceeccCCccc-cccccCCCCcceeceecccccccccHHH
Confidence            1111111111   134443333222222 8999999999999999999999986444

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=95.83  E-value=0.0038  Score=35.18  Aligned_cols=16  Identities=38%  Similarity=0.777  Sum_probs=14.0

Q ss_pred             CCCccccCccCcccCC
Q 023000          219 TGGTELCPQCGARFSS  234 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~  234 (289)
                      +++||.|++|+++|..
T Consensus        11 ~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen   11 GEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             SSSSEEESSSSEEESS
T ss_pred             CCCCCCCCCCcCeeCc
Confidence            5599999999999963

...

>smart00355 ZnF_C2H2 zinc finger

Probab=95.56  E-value=0.013  Score=32.02  Aligned_cols=24  Identities=42%  Similarity=0.843  Sum_probs=21.8

Q ss_pred             cccCccCcccCChHHHHHHHHhhcC
Q 023000          223 ELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      |+|+.|++.|.....|..|++ .|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~-~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR-THX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence            679999999999999999988 765

>PHA00732 hypothetical protein

Probab=95.11  E-value=0.015  Score=42.24  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||.|+.|++.|.+..+|..|++.+|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~   26 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT   26 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC
Confidence            68999999999999999999985443

>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]

Probab=95.03  E-value=0.009  Score=51.62  Aligned_cols=40  Identities=35%  Similarity=0.808  Sum_probs=35.0

Q ss_pred             CCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCC
Q 023000           99 RKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGP  140 (289)
Q Consensus        99 ~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~  140 (289)
                      ..|+..-|++....  ||+|+-|+.-||+.||....|.|+..
T Consensus         9 kHCs~~~CkqlDFL--Pf~Cd~C~~~FC~eHrsye~H~Cp~~   48 (250)
T KOG3183|consen    9 KHCSVPYCKQLDFL--PFKCDGCSGIFCLEHRSYESHHCPKG   48 (250)
T ss_pred             cccCcchhhhcccc--ceeeCCccchhhhccchHhhcCCCcc
Confidence            46888889988654  99999999999999999999999863

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.93  E-value=0.017  Score=31.61  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=12.8

Q ss_pred             ccccccCcccCChhhHHHHHHhhc
Q 023000          260 DVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      |+|+.|+.... ...|.+|++++|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666666555 666666666655

>PRK04860 hypothetical protein; Provisional

Probab=94.87  E-value=0.012  Score=48.52  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChh
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPV  273 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~  273 (289)
                      -+|.|. |++   ....+.+|.+ +|++++        +|.|..|++.|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~r-i~~g~~--------~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNR-VVRGEA--------VYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHH-HhcCCc--------cEECCCCCceeEEec
Confidence            479998 998   6667899999 999999        999999999887543

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.39  E-value=0.037  Score=36.23  Aligned_cols=31  Identities=29%  Similarity=0.524  Sum_probs=22.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      .+.|..|++|+..+.+..+|.+|+. .+.+.+
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle-~~H~~k   51 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLE-IRHFKK   51 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHH-HHTTTS
T ss_pred             cCCCCCCCcchhhccchhhHHHHHH-HHhccc
Confidence            3479999999999999999999998 666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.35  E-value=0.022  Score=31.40  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=13.1

Q ss_pred             ccccccCcccCChhhHHHHHH
Q 023000          260 DVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      |.|.+|++.|.....|..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            456666666666666666664

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=93.70  E-value=0.05  Score=49.03  Aligned_cols=54  Identities=22%  Similarity=0.439  Sum_probs=34.9

Q ss_pred             ccccccCCc--cCcccccC----------CCccccccCCCCCCCc-----ceeecCCCCCCccccCCCCCC
Q 023000           22 DFLPFTCDC--CHKVFCLD----------HRSYNQHQCPKAERHD-----VTVVICPLCAKGVRLRPDENP   75 (289)
Q Consensus        22 dfLPf~C~~--C~k~Fc~~----------h~~~~~H~c~~~~~~~-----~~~~~Cp~C~k~~~~~~~~~~   75 (289)
                      |-.||+|+.  |+|.|-..          |-..+.|.-+.....+     .+||.|++|+|.+.-.-+++-
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKY  416 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY  416 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCcccee
Confidence            458999986  99999544          3333333333332221     489999999998875555443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.10  E-value=0.058  Score=29.65  Aligned_cols=21  Identities=33%  Similarity=0.624  Sum_probs=19.8

Q ss_pred             cccCccCcccCChHHHHHHHH
Q 023000          223 ELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      |.|..|++.|.....|..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            679999999999999999987

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.81  E-value=0.038  Score=31.21  Aligned_cols=21  Identities=24%  Similarity=0.505  Sum_probs=15.5

Q ss_pred             ccccccCcccCChhhHHHHHH
Q 023000          260 DVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      |.|..|++.|.+..+|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            667777777777777777764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.19  E-value=0.12  Score=28.78  Aligned_cols=20  Identities=35%  Similarity=0.775  Sum_probs=11.3

Q ss_pred             ccccccCcccCChhhHHHHHH
Q 023000          260 DVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      ..|+.||+.| ....|.+|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3466666666 4555556653

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=90.66  E-value=0.15  Score=28.70  Aligned_cols=10  Identities=40%  Similarity=0.966  Sum_probs=7.6

Q ss_pred             cCCCCCCccc
Q 023000           59 ICPLCAKGVR   68 (289)
Q Consensus        59 ~Cp~C~k~~~   68 (289)
                      .||.|++.++
T Consensus         2 ~CP~C~~~V~   11 (26)
T PF10571_consen    2 TCPECGAEVP   11 (26)
T ss_pred             cCCCCcCCch
Confidence            4888888774

Several members are annotated as putative helicases.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=90.60  E-value=0.092  Score=32.18  Aligned_cols=13  Identities=31%  Similarity=0.858  Sum_probs=10.4

Q ss_pred             ecCCCCCCccccC
Q 023000           58 VICPLCAKGVRLR   70 (289)
Q Consensus        58 ~~Cp~C~k~~~~~   70 (289)
                      +.||.|+..|...
T Consensus         3 ~~CP~C~~~~~v~   15 (38)
T TIGR02098         3 IQCPNCKTSFRVV   15 (38)
T ss_pred             EECCCCCCEEEeC
Confidence            6799999988754

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=90.41  E-value=0.19  Score=27.30  Aligned_cols=20  Identities=30%  Similarity=0.610  Sum_probs=16.6

Q ss_pred             cccCccCcccCChHHHHHHHH
Q 023000          223 ELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      |.|+.|+.... ...|.+|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~   20 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLK   20 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHH
Confidence            68999999988 899999998

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=90.32  E-value=0.13  Score=34.78  Aligned_cols=10  Identities=30%  Similarity=0.830  Sum_probs=8.1

Q ss_pred             ccccCCcccc
Q 023000          114 NTIKCRDCTV  123 (289)
Q Consensus       114 ~~~~C~~C~~  123 (289)
                      ++|+|++||-
T Consensus        47 ~~Y~CP~CGF   56 (59)
T PRK14890         47 NPYTCPKCGF   56 (59)
T ss_pred             CceECCCCCC
Confidence            4899999983

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.10  E-value=0.27  Score=27.32  Aligned_cols=20  Identities=35%  Similarity=0.781  Sum_probs=17.1

Q ss_pred             cccCccCcccCChHHHHHHHH
Q 023000          223 ELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      ..|+.||+.| ....|..|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            4799999999 6778999975

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=90.02  E-value=0.15  Score=31.10  Aligned_cols=13  Identities=23%  Similarity=0.774  Sum_probs=10.2

Q ss_pred             ecCCCCCCccccC
Q 023000           58 VICPLCAKGVRLR   70 (289)
Q Consensus        58 ~~Cp~C~k~~~~~   70 (289)
                      +.||.|+..|...
T Consensus         3 i~Cp~C~~~y~i~   15 (36)
T PF13717_consen    3 ITCPNCQAKYEID   15 (36)
T ss_pred             EECCCCCCEEeCC
Confidence            5799999988754

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=89.88  E-value=0.14  Score=34.65  Aligned_cols=9  Identities=33%  Similarity=1.014  Sum_probs=7.9

Q ss_pred             ccccCCccc
Q 023000          114 NTIKCRDCT  122 (289)
Q Consensus       114 ~~~~C~~C~  122 (289)
                      ++|+|++||
T Consensus        49 ~~Y~Cp~CG   57 (61)
T COG2888          49 NPYRCPKCG   57 (61)
T ss_pred             CceECCCcC
Confidence            499999998

>smart00451 ZnF_U1 U1-like zinc finger

Probab=89.85  E-value=0.24  Score=29.43  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=18.7

Q ss_pred             cccccccCcccCChhhHHHHHH
Q 023000          259 VDVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      +|.|.+|++.|....++..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            6889999999998888888874

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=89.75  E-value=0.19  Score=38.66  Aligned_cols=30  Identities=27%  Similarity=0.709  Sum_probs=22.0

Q ss_pred             ccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCccccC
Q 023000           26 FTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLR   70 (289)
Q Consensus        26 f~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~~   70 (289)
                      ..|..||+.|      |.         -+..|.+||.||..|...
T Consensus        10 R~Cp~CG~kF------YD---------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKF------YD---------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchh------cc---------CCCCCccCCCCCCccCcc
Confidence            4699999999      22         122567899999999754

The function of members of this family is unknown.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=89.55  E-value=0.23  Score=30.23  Aligned_cols=33  Identities=24%  Similarity=0.591  Sum_probs=22.6

Q ss_pred             ccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCcc
Q 023000           26 FTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGV   67 (289)
Q Consensus        26 f~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~   67 (289)
                      +.|+.|+..|-.+     +-+-+..+    +...|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~-----d~~ip~~g----~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEID-----DEKIPPKG----RKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCC-----HHHCCCCC----cEEECCCCCCEe
Confidence            6899999999433     33323222    458999999877

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=89.10  E-value=0.17  Score=31.02  Aligned_cols=13  Identities=31%  Similarity=0.889  Sum_probs=10.6

Q ss_pred             ecCCCCCCccccC
Q 023000           58 VICPLCAKGVRLR   70 (289)
Q Consensus        58 ~~Cp~C~k~~~~~   70 (289)
                      ..||.|+..|.+.
T Consensus         3 i~CP~C~~~f~v~   15 (37)
T PF13719_consen    3 ITCPNCQTRFRVP   15 (37)
T ss_pred             EECCCCCceEEcC
Confidence            5799999999754

>TIGR00622 ssl1 transcription factor ssl1

Probab=88.96  E-value=0.62  Score=35.96  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=22.3

Q ss_pred             cccCCccccccccc---CcCCCCCCCCCCC
Q 023000          115 TIKCRDCTVDHCLK---HRFAPDHSCPGPK  141 (289)
Q Consensus       115 ~~~C~~C~~~fc~~---hr~~~~h~C~~~~  141 (289)
                      .|.|+.|.+.||+.   --++.-|+|+.|.
T Consensus        81 ~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~  110 (112)
T TIGR00622        81 RYVCAVCKNVFCVDCDVFVHESLHCCPGCI  110 (112)
T ss_pred             ceeCCCCCCccccccchhhhhhccCCcCCC
Confidence            78999999999855   5667889998765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=88.57  E-value=0.17  Score=28.46  Aligned_cols=21  Identities=33%  Similarity=0.611  Sum_probs=19.4

Q ss_pred             cccCccCcccCChHHHHHHHH
Q 023000          223 ELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      |.|..|++.|.....|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            789999999999999998876

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=88.04  E-value=0.29  Score=37.61  Aligned_cols=13  Identities=23%  Similarity=0.542  Sum_probs=10.3

Q ss_pred             cccCCcccccccc
Q 023000          115 TIKCRDCTVDHCL  127 (289)
Q Consensus       115 ~~~C~~C~~~fc~  127 (289)
                      |++|++||..|-+
T Consensus        26 PivCP~CG~~~~~   38 (108)
T PF09538_consen   26 PIVCPKCGTEFPP   38 (108)
T ss_pred             CccCCCCCCccCc
Confidence            8888888888843

The function of members of this family is unknown.

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=86.80  E-value=0.41  Score=31.56  Aligned_cols=27  Identities=26%  Similarity=0.760  Sum_probs=17.0

Q ss_pred             cccCCccccccccc---CcCCCCCCCCCCC
Q 023000          115 TIKCRDCTVDHCLK---HRFAPDHSCPGPK  141 (289)
Q Consensus       115 ~~~C~~C~~~fc~~---hr~~~~h~C~~~~  141 (289)
                      .|.|+.|++.||+.   .-++.-|+|+.|.
T Consensus        21 ~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~   50 (51)
T PF07975_consen   21 RYRCPKCKNHFCIDCDVFIHETLHNCPGCE   50 (51)
T ss_dssp             EE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred             eEECCCCCCccccCcChhhhccccCCcCCC
Confidence            79999999999865   7788889999763

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=86.58  E-value=0.78  Score=30.44  Aligned_cols=28  Identities=43%  Similarity=0.822  Sum_probs=22.3

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      .|.||.|++.| +...|..|....|....
T Consensus         2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~~   29 (54)
T PF05605_consen    2 SFTCPYCGKGF-SESSLVEHCEDEHRSES   29 (54)
T ss_pred             CcCCCCCCCcc-CHHHHHHHHHhHCcCCC
Confidence            58999999954 56789999988776543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=84.68  E-value=0.83  Score=27.04  Aligned_cols=11  Identities=36%  Similarity=0.745  Sum_probs=7.8

Q ss_pred             ecCCCCCCccc
Q 023000           58 VICPLCAKGVR   68 (289)
Q Consensus        58 ~~Cp~C~k~~~   68 (289)
                      |+|..||..+.
T Consensus         1 Y~C~~Cg~~~~   11 (32)
T PF03604_consen    1 YICGECGAEVE   11 (32)
T ss_dssp             EBESSSSSSE-
T ss_pred             CCCCcCCCeeE
Confidence            67888888774

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=84.61  E-value=0.68  Score=28.55  Aligned_cols=31  Identities=26%  Similarity=0.697  Sum_probs=19.8

Q ss_pred             ccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCcc
Q 023000           26 FTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGV   67 (289)
Q Consensus        26 f~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~   67 (289)
                      |+|..||+.|-.....      .     +.....||.||..+
T Consensus         6 y~C~~Cg~~fe~~~~~------~-----~~~~~~CP~Cg~~~   36 (41)
T smart00834        6 YRCEDCGHTFEVLQKI------S-----DDPLATCPECGGDV   36 (41)
T ss_pred             EEcCCCCCEEEEEEec------C-----CCCCCCCCCCCCcc
Confidence            7999999999433211      0     01235799999854

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=84.15  E-value=0.77  Score=29.38  Aligned_cols=32  Identities=28%  Similarity=0.618  Sum_probs=22.7

Q ss_pred             ccccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCcccc
Q 023000           24 LPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRL   69 (289)
Q Consensus        24 LPf~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~   69 (289)
                      +.|+|+.||..|-.+-..              ....||.||..+-.
T Consensus         2 ~~y~C~~CG~~~~~~~~~--------------~~~~Cp~CG~~~~~   33 (46)
T PRK00398          2 AEYKCARCGREVELDEYG--------------TGVRCPYCGYRILF   33 (46)
T ss_pred             CEEECCCCCCEEEECCCC--------------CceECCCCCCeEEE
Confidence            579999999999443211              13689999987754

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=83.71  E-value=0.25  Score=46.03  Aligned_cols=56  Identities=25%  Similarity=0.352  Sum_probs=50.3

Q ss_pred             CccccCccCcccCChHHHHHHHHh-hcCCC--CCCCCCCCCccccc--ccCcccCChhhHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEK-IHDRS--GNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~-~h~~~--k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      .++.|..|...|.....|..|.+. .|.++  +        |+.|+  .|++.|.+...|..|..+|.+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~--------~~~~p~~~~~~~~~~~~~~~~~~~~~~~  348 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLK--------PFSCPYSLCGKLFSRNDALKRHILLHTS  348 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCC--------ceeeeccCCCccccccccccCCcccccC
Confidence            478999999999999999999874 58888  8        99999  799999999999999977764

>PHA00626 hypothetical protein

Probab=82.89  E-value=0.83  Score=30.51  Aligned_cols=14  Identities=21%  Similarity=0.565  Sum_probs=11.7

Q ss_pred             ccccCCcccccccc
Q 023000          114 NTIKCRDCTVDHCL  127 (289)
Q Consensus       114 ~~~~C~~C~~~fc~  127 (289)
                      +.|+|+.||..|..
T Consensus        22 nrYkCkdCGY~ft~   35 (59)
T PHA00626         22 DDYVCCDCGYNDSK   35 (59)
T ss_pred             cceEcCCCCCeech
Confidence            38999999999953

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=82.87  E-value=1  Score=48.14  Aligned_cols=63  Identities=22%  Similarity=0.251  Sum_probs=49.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC----------------CCCCCCCCcccccccCcccCChhhHHHHHHh
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG----------------NQARPKVTVDVCPKCSQGFCDPVALVEHVER  281 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k----------------~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~  281 (289)
                      -.+.|.|+.|+-.|.....|..|+|..|....                ..-..+.+||.|..|...++...+|..|+..
T Consensus       462 ~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  462 FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             ccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            34789999999999999999999995443211                1112357799999999999999999999863

>smart00451 ZnF_U1 U1-like zinc finger

Probab=82.78  E-value=1  Score=26.56  Aligned_cols=22  Identities=18%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             ccccCccCcccCChHHHHHHHH
Q 023000          222 TELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      +|.|..|++.|.....+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            6899999999999999999976

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding

Probab=82.46  E-value=1.2  Score=30.82  Aligned_cols=39  Identities=26%  Similarity=0.841  Sum_probs=33.0

Q ss_pred             CcccCcCCcCCCCCcccccccCCccCcccccCCCcc-ccccC
Q 023000            7 PDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSY-NQHQC   47 (289)
Q Consensus         7 ~~~g~~C~~~~C~~~dfLPf~C~~C~k~Fc~~h~~~-~~H~c   47 (289)
                      .+....|...+|+.+.|+  +|..|.|.+|-+|.-. +.|.|
T Consensus        24 ~~~~~~C~~~gC~~~s~I--~C~~Ckk~~Cf~Hfiv~~~H~C   63 (63)
T PF04236_consen   24 KNVAGDCDITGCNNTSFI--RCAYCKKSLCFNHFIVSEYHLC   63 (63)
T ss_pred             CCCcCcCCCCCCCCcCEE--EccccCCcccccceeeeeeEcC
Confidence            456678999999999995  8999999999999885 56765

It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=82.35  E-value=0.83  Score=27.10  Aligned_cols=24  Identities=21%  Similarity=0.825  Sum_probs=16.4

Q ss_pred             ccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCC
Q 023000           26 FTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAK   65 (289)
Q Consensus        26 f~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k   65 (289)
                      |+|..||-.+-.+.                .+..||+||-
T Consensus         2 ~~C~~CGy~y~~~~----------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE----------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc----------------CCCcCcCCCC
Confidence            67888887773222                2357999986

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=82.13  E-value=0.81  Score=35.97  Aligned_cols=29  Identities=14%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             ccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCcccc
Q 023000           26 FTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRL   69 (289)
Q Consensus        26 f~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~   69 (289)
                      ..|+.||+.|      +.         -+..|.+||.||..|..
T Consensus        10 r~Cp~cg~kF------YD---------Lnk~p~vcP~cg~~~~~   38 (129)
T TIGR02300        10 RICPNTGSKF------YD---------LNRRPAVSPYTGEQFPP   38 (129)
T ss_pred             ccCCCcCccc------cc---------cCCCCccCCCcCCccCc
Confidence            4689999999      21         12356899999998864

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK04023 DNA polymerase II large subunit; Validated

Probab=80.82  E-value=1.4  Score=45.88  Aligned_cols=11  Identities=18%  Similarity=0.262  Sum_probs=6.2

Q ss_pred             cCChhhHHHHH
Q 023000          269 FCDPVALVEHV  279 (289)
Q Consensus       269 F~~~~~L~~H~  279 (289)
                      ......|+.|+
T Consensus       823 ~~~~eDLiGhL  833 (1121)
T PRK04023        823 VEKREDLIGHL  833 (1121)
T ss_pred             CCChhhcccce
Confidence            34556666665

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=80.79  E-value=1.3  Score=28.25  Aligned_cols=10  Identities=30%  Similarity=0.723  Sum_probs=5.6

Q ss_pred             ecCCCCCCcc
Q 023000           58 VICPLCAKGV   67 (289)
Q Consensus        58 ~~Cp~C~k~~   67 (289)
                      |.|..||..|
T Consensus         3 Y~C~~Cg~~~   12 (44)
T smart00659        3 YICGECGREN   12 (44)
T ss_pred             EECCCCCCEe
Confidence            5555555544

present in RNA polymerase I, II and III

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=80.76  E-value=0.7  Score=30.47  Aligned_cols=27  Identities=30%  Similarity=0.768  Sum_probs=14.7

Q ss_pred             cccccCCccCcccccC---CCccccccCCC
Q 023000           23 FLPFTCDCCHKVFCLD---HRSYNQHQCPK   49 (289)
Q Consensus        23 fLPf~C~~C~k~Fc~~---h~~~~~H~c~~   49 (289)
                      -..|+|+.|++.||.+   -.++.-|+|+-
T Consensus        19 ~~~y~C~~C~~~FC~dCD~fiHE~LH~CPG   48 (51)
T PF07975_consen   19 SSRYRCPKCKNHFCIDCDVFIHETLHNCPG   48 (51)
T ss_dssp             -EEE--TTTT--B-HHHHHTTTTTS-SSST
T ss_pred             CCeEECCCCCCccccCcChhhhccccCCcC
Confidence            3679999999999988   33377777764

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.35  E-value=1.2  Score=38.62  Aligned_cols=23  Identities=22%  Similarity=0.556  Sum_probs=16.6

Q ss_pred             eecCCCCCCccccCCCCCCcccc
Q 023000           57 VVICPLCAKGVRLRPDENPHITW   79 (289)
Q Consensus        57 ~~~Cp~C~k~~~~~~~~~~~~~~   79 (289)
                      .++||+|++.|.........+++
T Consensus         5 ~~~CPvC~~~F~~~~vrs~~~r~   27 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVRSGKIRV   27 (214)
T ss_pred             ceECCCCCCeeeeeEEEcCCceE
Confidence            47899999999866555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
1wys_A	75	Solution Structure Of The First Zf-An1 Domain Of Mo		1e-08

>pdb|1WYS|A Chain A, Solution Structure Of The First Zf-An1 Domain Of Mouse Riken Cdna 2310008m20 Protein Length = 75

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 8  DLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKA 50
          D+G+HC +  C+Q DFLPF CD C  +FCL+HRS + H C + 
Sbjct: 12 DIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEV 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1wys_A	75	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	1e-19
1x4v_A	63	Hypothetical protein LOC130617; ZF-AN1 domain, zin	2e-09
1x4v_A	63	Hypothetical protein LOC130617; ZF-AN1 domain, zin	9e-05
1wfe_A	86	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	9e-09
1wfe_A	86	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	2e-04

>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 75

 Score = 80.1 bits (197), Expect = 1e-19
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 6  FPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHD 54
            D+G+HC +  C+Q DFLPF CD C  +FCL+HRS + H C +     
Sbjct: 10 ELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVK 58

>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 52.0 bits (124), Expect = 2e-09
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 13 CSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER 52
          C    C+Q + +  TC+ C + FC+ HR    H C     
Sbjct: 15 CERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGH 54

>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 100 KCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK 142
           KC   GC++  +    + C  C+ + C+KHR   DH C G   
Sbjct: 14  KCERAGCRQREMMK--LTCERCSRNFCIKHRHPLDHDCSGEGH 54

>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Length = 86

 Score = 50.9 bits (121), Expect = 9e-09
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 12 HCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER 52
           CS   C  ++ +   C  C K FCL HR  + H C K E 
Sbjct: 27 SCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEV 67

>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Length = 86

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 94  KVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLL 153
              K   C  +GC ++ + +  + C  C  + CL+HR   DH C   +      A    L
Sbjct: 21  DEHKSYSCSFKGCTDVELVA--VICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKL 78

Query: 154 NRSRK 158
            RS  
Sbjct: 79  VRSGP 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.85
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.72
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.7
1wys_A	75	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	99.69
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.67
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.66
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.64
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.56
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.56
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.5
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.47
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.47
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.47
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.46
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.43
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.43
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.42
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.42
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.38
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.38
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.37
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.37
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.36
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.36
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.35
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.34
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.33
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.3
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.3
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.29
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.28
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.28
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.27
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.26
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.26
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.24
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.23
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.22
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.2
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.2
1x4v_A	63	Hypothetical protein LOC130617; ZF-AN1 domain, zin	99.2
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.19
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.18
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.18
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.17
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.16
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.15
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.15
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.12
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.12
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.12
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.11
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.09
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.0
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.0
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.99
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.97
1wfe_A	86	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	98.94
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.93
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.9
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.89
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.87
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.84
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.82
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.82
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.82
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.81
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.8
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.8
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.79
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.79
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.79
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.78
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.78
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.78
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.78
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.78
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.77
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.77
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.77
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.77
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.75
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.75
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.73
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.7
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.68
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.68
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.67
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.65
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.63
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.63
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.62
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.62
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.62
1x4v_A	63	Hypothetical protein LOC130617; ZF-AN1 domain, zin	98.62
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.62
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.61
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.61
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.61
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.61
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.6
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.6
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.6
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.6
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.6
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.6
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.58
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.58
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.57
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.57
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.56
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.56
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.55
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.55
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.55
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.55
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.55
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.53
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.53
1wfe_A	86	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	98.53
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.52
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.5
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.46
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.46
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.46
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.44
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.44
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.43
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.41
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.4
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.4
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.38
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.37
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.36
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.36
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.35
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.35
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.35
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.35
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.35
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.34
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.34
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.34
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.34
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.34
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.34
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.33
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.33
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.33
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.33
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.33
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.33
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.33
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.33
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.33
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.33
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.32
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.32
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.32
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.32
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.32
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.32
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.32
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.32
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.32
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.32
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.32
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.31
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.31
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.31
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.31
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.31
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.31
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.31
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.31
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.31
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.31
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.3
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.3
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.3
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.3
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.3
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.29
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.29
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.29
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.29
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.28
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.28
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.28
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.28
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.28
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.28
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.28
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.28
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.27
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.27
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.27
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.27
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.27
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.27
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.27
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.27
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.27
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.26
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.26
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.26
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.25
1wys_A	75	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	98.25
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.25
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.25
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.24
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.24
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.24
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.24
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.24
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.24
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.24
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.24
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.23
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.23
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.22
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.2
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.2
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.19
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.19
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.15
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.14
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.14
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.14
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.13
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.13
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.12
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.12
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.12
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.11
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.11
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.11
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.09
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.08
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.07
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.06
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.05
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.05
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.04
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.04
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.03
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.03
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	98.03
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.02
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.02
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.0
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.99
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.98
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.98
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.98
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.98
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.97
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	97.97
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.97
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.97
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.96
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.96
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.95
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.95
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	97.95
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.95
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.94
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	97.93
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.92
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.15
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.91
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.14
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.91
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.9
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	97.9
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.89
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.89
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.89
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.88
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.87
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.86
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.86
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.85
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	97.84
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	97.82
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.02
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.81
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.8
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	97.79
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.79
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.78
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.98
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	97.76
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	97.76
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.95
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	97.71
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	97.7
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.87
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	97.68
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	97.67
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.67
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	97.64
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	97.64
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	97.64
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.62
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.61
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.56
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.55
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.53
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	97.43
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	97.42
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.4
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.21
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.21
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.88
2epa_A	72	Krueppel-like factor 10; transforming growth facto	96.72
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.09
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.02
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	93.92
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.59
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.34
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	91.85
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	87.55
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.79
1z60_A	59	TFIIH basal transcription factor complex P44 subun	83.86
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	83.28
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	83.24
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	82.88
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	80.55

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.85  E-value=5.3e-23  Score=172.79  Aligned_cols=163  Identities=23%  Similarity=0.412  Sum_probs=109.2

Q ss_pred             cccccccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCccccCCCCCCccccccccccCCCCCCcccCcccCC
Q 023000           21 IDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRK  100 (289)
Q Consensus        21 ~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~~~~~~~~~~~~~H~~~~c~~~~~~~~~~~~~  100 (289)
                      .+-.||.|+.|++.|... ..+..|+-.+.   +.++|+|++|++.|..      ...|.+|+..+.+.           
T Consensus        17 ~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~---~~~~~~C~~C~~~f~~------~~~l~~H~~~h~~~-----------   75 (190)
T 2i13_A           17 PGEKPYACPECGKSFSRS-DHLAEHQRTHT---GEKPYKCPECGKSFSD------KKDLTRHQRTHTGE-----------   75 (190)
T ss_dssp             --------------CCSS-HHHHHGGGCC------CCEECTTTCCEESS------HHHHHHHHHHHHCC-----------
T ss_pred             CCCCCCcCCCCccccCCH-HHHHHHHHHcC---CCCCccCCCcCchhCC------HHHHHHHHHhcCCC-----------
Confidence            345799999999999544 35566665443   3567999999999974      34566676543321           


Q ss_pred             CCCCCCcceeeecccccCCccccccccc---------CcCCCCCCCCCCCCCCCccchhhhhccCCCCCCCCCCCCCCCC
Q 023000          101 CPVRGCKEILVFSNTIKCRDCTVDHCLK---------HRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSS  171 (289)
Q Consensus       101 C~~~~ck~~~~~~~~~~C~~C~~~fc~~---------hr~~~~h~C~~~~~~~~~~~~~a~l~r~~~~~~~~~~~~~~~~  171 (289)
                                   .+|+|+.|++.|..+         |..+++|.|..|++.+.....+..+.+                
T Consensus        76 -------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~----------------  126 (190)
T 2i13_A           76 -------------KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR----------------  126 (190)
T ss_dssp             -------------CCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHH----------------
T ss_pred             -------------CCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH----------------
Confidence                         289999999999532         677899999999886655333322211                


Q ss_pred             CCccccccccchhhhhhhhcccCccchhhhhhhhhhcCCCCCCCCCCCCCccccCccCcccCChHHHHHHHHhhcCCCCC
Q 023000          172 TKWTSSFLNAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGN  251 (289)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~  251 (289)
                                                         ...         +++||.|+.|++.|.....|..|++ +|.+++ 
T Consensus       127 -----------------------------------~h~---------~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~-  160 (190)
T 2i13_A          127 -----------------------------------THT---------GEKPYKCPECGKSFSREDNLHTHQR-THTGEK-  160 (190)
T ss_dssp             -----------------------------------HHH---------CCCCEECTTTCCEESCHHHHHHHHH-HHHCCC-
T ss_pred             -----------------------------------HhC---------CCCCeECCCCCcccCCHHHHHHHHH-hcCCCC-
Confidence                                               111         3489999999999999999999999 999999 


Q ss_pred             CCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          252 QARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       252 ~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                             ||.|++|++.|.....|..|+++|++..
T Consensus       161 -------~~~C~~C~~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          161 -------PYKCPECGKSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             -------CEECTTTCCEESSHHHHHHHHTTC----
T ss_pred             -------CeECCCCCCccCCHHHHHHHHHhcCCCC
Confidence                   9999999999999999999999988753

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.72  E-value=1.6e-18  Score=145.28  Aligned_cols=134  Identities=22%  Similarity=0.383  Sum_probs=93.0

Q ss_pred             cceeecCCCCCCccccCCCCCCccccccccccCCCCCCcccCcccCCCCCCCCcceeeecccccCCcccccccc------
Q 023000           54 DVTVVICPLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCL------  127 (289)
Q Consensus        54 ~~~~~~Cp~C~k~~~~~~~~~~~~~~~~H~~~~c~~~~~~~~~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~------  127 (289)
                      ++++|.|++|++.|..      ...|.+|+..+.+.                        .+|+|+.|++.|..      
T Consensus        18 ~~~~~~C~~C~~~f~~------~~~l~~H~~~h~~~------------------------~~~~C~~C~~~f~~~~~l~~   67 (190)
T 2i13_A           18 GEKPYACPECGKSFSR------SDHLAEHQRTHTGE------------------------KPYKCPECGKSFSDKKDLTR   67 (190)
T ss_dssp             -------------CCS------SHHHHHGGGCC---------------------------CCEECTTTCCEESSHHHHHH
T ss_pred             CCCCCcCCCCccccCC------HHHHHHHHHHcCCC------------------------CCccCCCcCchhCCHHHHHH
Confidence            4578999999999974      34567777544332                        28999999999963      


Q ss_pred             ---cCcCCCCCCCCCCCCCCCccchhhhhccCCCCCCCCCCCCCCCCCCccccccccchhhhhhhhcccCccchhhhhhh
Q 023000          128 ---KHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLNAASSFRASAEAGMSKLSNEISQKL  204 (289)
Q Consensus       128 ---~hr~~~~h~C~~~~~~~~~~~~~a~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (289)
                         .|..+++|.|+.|++.+.....+..+.+                                                 
T Consensus        68 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-------------------------------------------------   98 (190)
T 2i13_A           68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQR-------------------------------------------------   98 (190)
T ss_dssp             HHHHHHCCCCEECTTTCCEESCHHHHHHHHH-------------------------------------------------
T ss_pred             HHHhcCCCCCccCcccCCccCCHHHHHHHHH-------------------------------------------------
Confidence               2677889999999886654333322211                                                 


Q ss_pred             hhhcCCCCCCCCCCCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          205 QIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       205 ~~~~~~~~~~~~~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                        ...         ++++|.|++|++.|.....|..|++ +|.+++        ||.|++|++.|.....|..|+++|++
T Consensus        99 --~h~---------~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A           99 --THT---------GEKPYACPECGKSFSQLAHLRAHQR-THTGEK--------PYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             --HHH---------TCCCEECTTTCCEESSHHHHHHHHH-HHHCCC--------CEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             --hcC---------CCCCCcCCCCCCccCCHHHHHHHHH-HhCCCC--------CeECCCCCcccCCHHHHHHHHHhcCC
Confidence              111         3479999999999999999999999 999999        99999999999999999999999987


Q ss_pred             CC
Q 023000          285 GT  286 (289)
Q Consensus       285 g~  286 (289)
                      ..
T Consensus       159 ~~  160 (190)
T 2i13_A          159 EK  160 (190)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.70  E-value=5.6e-18  Score=141.94  Aligned_cols=156  Identities=20%  Similarity=0.300  Sum_probs=113.9

Q ss_pred             cccccC--CccCcccccCCCccccccCCCCCCCcceeecC--CCCCCccccCCCCCCccccccccccCCCCCCcccCccc
Q 023000           23 FLPFTC--DCCHKVFCLDHRSYNQHQCPKAERHDVTVVIC--PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKK   98 (289)
Q Consensus        23 fLPf~C--~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~C--p~C~k~~~~~~~~~~~~~~~~H~~~~c~~~~~~~~~~~   98 (289)
                      ..||.|  +.|++.|-.. ..+..|+-.+.   ++++|.|  ++|++.|..      ...|.+|+..+.+..        
T Consensus        10 ~~~~~C~~~~C~~~f~~~-~~L~~H~~~h~---~~~~~~C~~~~C~~~f~~------~~~l~~H~~~h~~~~--------   71 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKN-WKLQAHLCKHT---GEKPFPCKEEGCEKGFTS------LHHLTRHSLTHTGEK--------   71 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSH-HHHHHHHHHHH---CCCSSCCSSTTCCCCCSS------HHHHHHHHTTTTTCC--------
T ss_pred             CcceeCCCCCCcchhCCH-HHHHHHHHhcC---CCCCccCCCCCCChhhCC------HHHHHHHHHHccCCC--------
Confidence            468999  6899999544 35555654332   3567999  889999973      455677876544322        


Q ss_pred             CCCCCCCCcceeeecccccCC--cccccccc----------cC-cCCCCCCC--CCCCCCCCccchhhhhccCCCCCCCC
Q 023000           99 RKCPVRGCKEILVFSNTIKCR--DCTVDHCL----------KH-RFAPDHSC--PGPKKLDTGFAFMSLLNRSRKEEPKP  163 (289)
Q Consensus        99 ~~C~~~~ck~~~~~~~~~~C~--~C~~~fc~----------~h-r~~~~h~C--~~~~~~~~~~~~~a~l~r~~~~~~~~  163 (289)
                                      +|+|+  .|++.|..          .| ..+.+|.|  ..|++.+.....+..+.+.       
T Consensus        72 ----------------~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-------  128 (190)
T 1tf6_A           72 ----------------NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-------  128 (190)
T ss_dssp             ----------------CEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG-------
T ss_pred             ----------------ceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH-------
Confidence                            89999  89999952          24 35678888  7788866554333333211       


Q ss_pred             CCCCCCCCCCccccccccchhhhhhhhcccCccchhhhhhhhhhcCCCCCCCCCCCCCccccCc--cCcccCChHHHHHH
Q 023000          164 KQSPATSSTKWTSSFLNAASSFRASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQ--CGARFSSVTTLIEH  241 (289)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~C~~--Cgk~F~~~~~L~~H  241 (289)
                                                                  ..         +++||.|+.  |+++|.....|..|
T Consensus       129 --------------------------------------------H~---------~~~~~~C~~~~C~k~F~~~~~L~~H  155 (190)
T 1tf6_A          129 --------------------------------------------HT---------QQLPYECPHEGCDKRFSLPSRLKRH  155 (190)
T ss_dssp             --------------------------------------------GS---------SSCSSBCCSSSCCCBCSSHHHHHHH
T ss_pred             --------------------------------------------hC---------CCCCccCCCCCCCchhcCHHHHHHH
Confidence                                                        11         448999988  99999999999999


Q ss_pred             HHhhcCCCCCCCCCCCCcccccc---cCcccCChhhHHHHHHhhcC
Q 023000          242 VEKIHDRSGNQARPKVTVDVCPK---CSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       242 ~~~~h~~~k~~~~~~~~p~~C~~---C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ++ +|++           |.|++   |++.|.....|..|+++||+
T Consensus       156 ~~-~H~~-----------~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          156 EK-VHAG-----------YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             HT-SSCS-----------CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             HH-HhCC-----------CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            98 8875           56777   99999999999999998876

>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.69  E-value=1.7e-17  Score=117.10  Aligned_cols=51  Identities=43%  Similarity=0.987  Sum_probs=48.2

Q ss_pred             CCCcCcccCcCCcCCCCCcccccccCCccCcccccCCCccccccCCCCCCC
Q 023000            3 TPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERH   53 (289)
Q Consensus         3 ~~~~~~~g~~C~~~~C~~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~~   53 (289)
                      .|||++||.||++++|+++|||||+|+.|++.||.+||.++.|.|+....+
T Consensus         7 ~m~~~~~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~HR~~e~H~C~~~~~~   57 (75)
T 1wys_A            7 GMAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVV   57 (75)
T ss_dssp             CCCCCCCCCCCSCTTTCCCSCCCEECTTTCCEECSTTCSSGGGTCCCCSSC
T ss_pred             cccccccCCCcCcccCCCccceeeECcccCcCcCcccCCccccCCCCCccc
Confidence            478999999999999999999999999999999999999999999987654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=6.3e-18  Score=136.69  Aligned_cols=58  Identities=28%  Similarity=0.604  Sum_probs=53.4

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHHHhhcC
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~~~hh~  284 (289)
                      +++||.|+.  |++.|.....|..|++.+|.+++        ||.|++  |++.|.....|..|+++|||
T Consensus        94 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~--------~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK--------PYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCC--------CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCC--------CeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            347999998  99999999999999833999999        999998  99999999999999999885

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.67  E-value=3.5e-17  Score=112.28  Aligned_cols=57  Identities=21%  Similarity=0.451  Sum_probs=54.5

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||||.|++||++|...+.|.+|++ +|++++        ||.|++||+.|.+.++|.+|+++|++.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~-~Ht~ek--------p~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRR-AHLGYR--------PRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHHTCC--------CEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHH-HhCCCc--------CeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            599999999999999999999999 999999        999999999999999999999988754

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.66  E-value=6.2e-17  Score=135.55  Aligned_cols=134  Identities=20%  Similarity=0.285  Sum_probs=102.0

Q ss_pred             cceeecC--CCCCCccccCCCCCCccccccccccCCCCCCcccCcccCCCCCCCCcceeeecccccC--Ccccccccc--
Q 023000           54 DVTVVIC--PLCAKGVRLRPDENPHITWENHVNVDCDPSNYDKVTKKRKCPVRGCKEILVFSNTIKC--RDCTVDHCL--  127 (289)
Q Consensus        54 ~~~~~~C--p~C~k~~~~~~~~~~~~~~~~H~~~~c~~~~~~~~~~~~~C~~~~ck~~~~~~~~~~C--~~C~~~fc~--  127 (289)
                      ..++|.|  +.|++.|..      ...|.+|+..+.+.                        .||.|  +.|++.|..  
T Consensus         9 ~~~~~~C~~~~C~~~f~~------~~~L~~H~~~h~~~------------------------~~~~C~~~~C~~~f~~~~   58 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNK------NWKLQAHLCKHTGE------------------------KPFPCKEEGCEKGFTSLH   58 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSS------HHHHHHHHHHHHCC------------------------CSSCCSSTTCCCCCSSHH
T ss_pred             CCcceeCCCCCCcchhCC------HHHHHHHHHhcCCC------------------------CCccCCCCCCChhhCCHH
Confidence            3577999  799999974      34566676543222                        28999  889999952  


Q ss_pred             -------cCcCCCCCCCC--CCCCCCCccchhhhhccCCCCCCCCCCCCCCCCCCccccccccchhhhhhhhcccCccch
Q 023000          128 -------KHRFAPDHSCP--GPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLNAASSFRASAEAGMSKLSN  198 (289)
Q Consensus       128 -------~hr~~~~h~C~--~~~~~~~~~~~~a~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (289)
                             .|..+++|.|.  .|++.+.....+..+.+.                                          
T Consensus        59 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~------------------------------------------   96 (190)
T 1tf6_A           59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR------------------------------------------   96 (190)
T ss_dssp             HHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHT------------------------------------------
T ss_pred             HHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHH------------------------------------------
Confidence                   37788899999  788866554443333211                                          


Q ss_pred             hhhhhhhhhcCCCCCCCCCCCCCcccc--CccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc--cCcccCChhh
Q 023000          199 EISQKLQIAKDGAGQSSSSGTGGTELC--PQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK--CSQGFCDPVA  274 (289)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~kp~~C--~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~  274 (289)
                              ..        ..++++|.|  +.|++.|.....|..|++ +|++++        ||.|++  |++.|.....
T Consensus        97 --------~h--------~~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~~~C~k~F~~~~~  151 (190)
T 1tf6_A           97 --------FH--------NIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQQL--------PYECPHEGCDKRFSLPSR  151 (190)
T ss_dssp             --------TS--------STTTSCCEECSSSSCEECSSHHHHHHHHG-GGSSSC--------SSBCCSSSCCCBCSSHHH
T ss_pred             --------hc--------CCCcceeeCCCCCCccccCCHHHHHHHHH-HhCCCC--------CccCCCCCCCchhcCHHH
Confidence                    00        013479999  899999999999999999 999999        999988  9999999999


Q ss_pred             HHHHHHhhcC
Q 023000          275 LVEHVERDHG  284 (289)
Q Consensus       275 L~~H~~~hh~  284 (289)
                      |..|+++|++
T Consensus       152 L~~H~~~H~~  161 (190)
T 1tf6_A          152 LKRHEKVHAG  161 (190)
T ss_dssp             HHHHHTSSCS
T ss_pred             HHHHHHHhCC
Confidence            9999998765

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.9e-16  Score=121.84  Aligned_cols=107  Identities=21%  Similarity=0.277  Sum_probs=86.6

Q ss_pred             cccCCcccccccc---------cCcCCCCCCCCCCCCCCCccchhhhhccCCCCCCCCCCCCCCCCCCccccccccchhh
Q 023000          115 TIKCRDCTVDHCL---------KHRFAPDHSCPGPKKLDTGFAFMSLLNRSRKEEPKPKQSPATSSTKWTSSFLNAASSF  185 (289)
Q Consensus       115 ~~~C~~C~~~fc~---------~hr~~~~h~C~~~~~~~~~~~~~a~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (289)
                      +|+|+.|++.|..         .|..+++|.|..|++.+.....+..+.+...                           
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~---------------------------   59 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC---------------------------   59 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCC---------------------------
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhh---------------------------
Confidence            8999999999952         3678899999999987765444433321100                           


Q ss_pred             hhhhhcccCccchhhhhhhhhhcCCCCCCCCCCCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          186 RASAEAGMSKLSNEISQKLQIAKDGAGQSSSSGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                                                    ...++++|.|++|++.|.....|..|++ +|.+++        ||.|++|
T Consensus        60 ------------------------------~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C  100 (124)
T 2dlq_A           60 ------------------------------MNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEM--------PYKCSSC  100 (124)
T ss_dssp             ------------------------------CCSCCCCEECSSSCCEESSHHHHHHHHH-HHSSSC--------SEECSSS
T ss_pred             ------------------------------cCCCCCCeECCCCCCccCCHHHHHHHHH-HcCCCC--------CccCCCc
Confidence                                          0013479999999999999999999999 999999        9999999


Q ss_pred             CcccCChhhHHHHHHhhcCCCC
Q 023000          266 SQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       266 ~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      ++.|.....|..|++.+|++.+
T Consensus       101 ~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A          101 SQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             CCEESSHHHHHHHHHHTSSCSS
T ss_pred             cchhCCHHHHHHHHHHHCCCCC
Confidence            9999999999999987777654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.56  E-value=3e-15  Score=116.40  Aligned_cols=59  Identities=31%  Similarity=0.515  Sum_probs=52.0

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc--ccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +++||.|+.  |++.|.....|..|++ +|.+++        ||.|+  .|++.|.....|..|+++|++..
T Consensus        59 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C           59 GEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDR--------PYVCPFDGCNKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             CCCCEECCSTTCCCEESCHHHHHHHHH-HHHCCC--------CCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred             CCCCeeCCCCCCcCccCCHHHHHHHHH-HhCCCC--------ceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence            347999985  9999999999999999 999999        99996  59999999999999999988653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.56  E-value=1.7e-15  Score=116.69  Aligned_cols=55  Identities=25%  Similarity=0.438  Sum_probs=51.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc--cccCcccCChhhHHHHHHhh
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC--PKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C--~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ++++|.|++|++.|.....|..|++ +|.+++        ||.|  +.|++.|.....|..|+++|
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           63 GVKPFQCKTCQRKFSRSDHLKTHTR-THTGEK--------PFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCCCEECTTTCCEESCHHHHHHHHH-HHHTCC--------CEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCccCCccCchhCCHHHHHHHHH-HhcCCC--------CeeCCCCCCccccCCHHHHHHHHhcC
Confidence            3479999999999999999999999 999999        9999  89999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.50  E-value=1.5e-14  Score=115.01  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|++|++.|.....|..|+++||++.
T Consensus        47 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~hh~~~  105 (133)
T 2lt7_A           47 WEKKYPCRYCEKVFPLAEYRTKHEI-HHTGER--------RYQCLACGKSFINYQFMSSHIKSVHSQD  105 (133)
T ss_dssp             CCSCEECSSSSCEESSHHHHHHHHH-HHHTCC--------CEEESSSCCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCeeCCccCeecccccchhhhcc-ccCCCc--------cccCCCCCCCcCCHHHHHHHhHHhcCCC
Confidence            4488999999999999999999988 899988        8999999999999999999998888753

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=6.8e-14  Score=98.59  Aligned_cols=61  Identities=25%  Similarity=0.510  Sum_probs=57.7

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      .+++||.|++|++.|.....|.+|++ +|.+++        ||+|++|++.|.....|.+|+++|+++.+
T Consensus        10 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           10 SGEKPYGCVECGKAFSRSSILVQHQR-VHTGEK--------PYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHH-GGGCSC--------CEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CCCCCccCCCCCCccCCHHHHHHHHH-hcCCCC--------CeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            46799999999999999999999999 999999        99999999999999999999999988765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=6.1e-14  Score=98.20  Aligned_cols=62  Identities=31%  Similarity=0.454  Sum_probs=57.7

Q ss_pred             CCCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          217 SGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       217 ~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      .++++||.|++|++.|.....|.+|++ +|.+++        ||.|++|++.|.....|..|+++|++...
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHER-IHCTDR--------PFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHG-GGCCSC--------SEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCC--------CEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            347799999999999999999999999 999999        99999999999999999999999997643

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.47  E-value=3.1e-14  Score=95.34  Aligned_cols=57  Identities=26%  Similarity=0.404  Sum_probs=51.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      |++||.|++|++.|.....|..|++ +|++++        ||.|++|++.|.....|..|+++||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLR-THTGEK--------PYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHH-HHHCCC--------CEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHH-HcCCCC--------CcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            3589999999999999999999999 999999        99999999999999999999999874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.46  E-value=8.5e-14  Score=102.04  Aligned_cols=61  Identities=25%  Similarity=0.527  Sum_probs=55.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      .+.++|.|++||+.|.....|.+|++ +|++++        ||.|++|++.|.+..+|.+|++..|.+..
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLR-LLHAAQ--------VFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHH-TTSCSS--------SEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhh-hccCCC--------ccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            35689999999999999999999999 999999        99999999999999999999876665543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=2e-13  Score=96.62  Aligned_cols=60  Identities=23%  Similarity=0.412  Sum_probs=56.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      .++++|.|+.|++.|.....|..|++ +|.+++        ||+|++|++.|.....|.+|+++|++..
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   72 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKT-VHTGEK--------PYRCNICGAQFNRPANLKTHTRIHSGEK   72 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHH-HHCCCC--------SEECTTTCCEESCHHHHHHHHHHHCCSC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHH-HcCCCC--------CEECCCCCchhCCHHHHHHHHHhcCCCC
Confidence            46799999999999999999999999 999999        9999999999999999999999988653

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.43  E-value=3.3e-13  Score=108.93  Aligned_cols=60  Identities=22%  Similarity=0.360  Sum_probs=55.2

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +++||.|..  |++.|.....|.+|++ +|.+++        ||.|++  |++.|.....|.+|+++|++...
T Consensus        87 ~~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~--------~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A           87 GEKPFPCPFPGCGKIFARSENLKIHKR-THTGEK--------PFKCEFEGCDRRFANSSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             CCCSEECSCTTTCCEESCHHHHHHHHT-TTCSSC--------SBCCSSTTCCCCBSSHHHHHHSSTTTTSCCC
T ss_pred             CCCcccCCcCCCCCccCCHHHHHHHHH-hhCCCC--------CccCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            348999998  9999999999999999 999999        999997  99999999999999999887543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.42  E-value=1.6e-13  Score=98.37  Aligned_cols=56  Identities=25%  Similarity=0.555  Sum_probs=52.8

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ++||.|+.|++.|.....|..|++ +|.+++        ||.|++|++.|.+...|..|+++|++
T Consensus        27 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           27 TRPYPCQYCGKRFHQKSDMKKHTF-IHTGEK--------PHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHHTCC--------CEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             CCCeeCCcCChhhCCHHHHHHHHH-HhcCCC--------CCcCCCcchhhCChHHHHHHHHhhCC
Confidence            479999999999999999999999 999999        99999999999999999999999874

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.5e-13  Score=110.74  Aligned_cols=58  Identities=19%  Similarity=0.416  Sum_probs=52.3

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHH-HhhcCC
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHV-ERDHGG  285 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~-~~hh~g  285 (289)
                      +++||.|+.  |++.|.....|..|++ +|.+++        ||.|++  |++.|.+...|..|+ ++|.+.
T Consensus        64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  126 (155)
T 2gli_A           64 GEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEK--------PYMCEHEGCSKAFSNASDRAKHQNRTHSNE  126 (155)
T ss_dssp             CCCCCCCCSTTCCCCCSSHHHHHHHHH-HTTTCC--------CEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCCCccCCCCCCCCcccCHHHHHHHHH-HcCCCC--------CeeCCCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            347999985  9999999999999999 999999        999998  999999999999999 566543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.38  E-value=8.9e-13  Score=97.57  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=55.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ++++|.|++|++.|.....|..|++ +|.+++        +|.|++|++.|.....|..|+++|++..
T Consensus        33 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           33 GVKPYKCKTCDYAAADSSSLNKHLR-IHSDER--------PFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-HSCCCC--------CEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CCCCEeCCCCCCccCCHHHHHHHHH-HhCCCC--------CccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3479999999999999999999999 999999        9999999999999999999999988754

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.38  E-value=4.2e-13  Score=89.72  Aligned_cols=55  Identities=22%  Similarity=0.460  Sum_probs=52.5

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|+.|++.|.....|..|++ +|.+++        ||.|++|++.|.....|..|+++|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR-THTDVR--------PYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HTSSCC--------CEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH-hcCCCC--------CccCCCCCchhcCHHHHHHHHHHhccc
Confidence            6999999999999999999999 999999        999999999999999999999988765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=9.4e-13  Score=93.81  Aligned_cols=60  Identities=23%  Similarity=0.459  Sum_probs=56.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +++||.|++|++.|.....|.+|++ +|.+++        ||.|++|++.|.....|.+|+++|++...
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~L~~H~~~H~~~~p   74 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRR-THTGEK--------PYKCDECGKAFIQRSHLIGHHRVHTGSGP   74 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHT-TTCCSC--------SEECSSSCCEESSHHHHHHHGGGSCCCCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHH-HcCCCc--------CeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            6689999999999999999999999 999999        99999999999999999999999887643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=4.1e-13  Score=92.62  Aligned_cols=57  Identities=23%  Similarity=0.414  Sum_probs=53.4

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhh-c-CCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKI-H-DRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~-h-~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      +++||.|+.|++.|.....|..|++ . | .+++        ||.|++|++.|.....|..|+++||+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~-~~H~~~~~--------~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            7 GEHTYRCKVCSRVYTHISNFCRHYV-TSHKRNVK--------VYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHH-HHSSSSCC--------CEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCcceECCCCcchhCCHHHHHHHHH-HHcCCCCc--------CeECCCCCCccCCHHHHHHHHHHHcC
Confidence            5689999999999999999999998 6 7 5888        99999999999999999999999886

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=5.5e-13  Score=95.22  Aligned_cols=60  Identities=20%  Similarity=0.315  Sum_probs=54.7

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCC---CCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDR---SGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~---~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      .+++||.|.+|++.|.....|.+|++ +|.+   ++        +|.|++|++.|.....|.+|++.+|.+.
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~--------~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAAL--------RFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHH-HHHHHTTTC--------CEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHH-HhhccCCCc--------ccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            36799999999999999999999999 8986   78        9999999999999999999997777654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.36  E-value=8.8e-14  Score=112.31  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=33.1

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|+.  |++.|.....|.+|++ +|++++        ||.|.
T Consensus       117 ~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~c~  154 (155)
T 2rpc_A          117 GEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDK--------SGPSS  154 (155)
T ss_dssp             SSCSBCCSSTTCCCCBSSHHHHHHSST-TTTSCC--------CSCSC
T ss_pred             CCCCccCCCCCCCCccCCHHHHHHHHH-HhcCCC--------CCCCC
Confidence            448999997  9999999999999999 999999        99985

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.35  E-value=1.9e-12  Score=97.63  Aligned_cols=59  Identities=25%  Similarity=0.469  Sum_probs=55.1

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +++|.|++|++.|.....|..|++ +|.+++        ||.|++|++.|.....|..|+++|++...
T Consensus        43 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  101 (106)
T 2ee8_A           43 ERPYTCDICHKAFRRQDHLRDHRY-IHSKEK--------PFKCQECGKGFCQSRTLAVHKTLHMQTSS  101 (106)
T ss_dssp             SCCCBCSSSCCBCSCHHHHHHHGG-GSCCCC--------TTSCSSSCCCCSSHHHHHHHHHHTTSCCC
T ss_pred             CCCcCCCCccchhCCHHHHHHHHH-HhCCCC--------CeECCCcCCcccCHHHHHHHHHHhCCCCC
Confidence            479999999999999999999998 999999        99999999999999999999999987543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=1.5e-12  Score=92.68  Aligned_cols=61  Identities=23%  Similarity=0.389  Sum_probs=55.2

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCC-CCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRS-GNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~-k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      .+++||.|++|++.|.....|..|++..|.++ +        +|.|++|++.|.....|..|++++|++.
T Consensus        11 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~--------~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A           11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVA--------KFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCS--------SEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCC--------ccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            36699999999999999999999987468775 7        9999999999999999999999988764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=1.2e-12  Score=88.44  Aligned_cols=56  Identities=23%  Similarity=0.468  Sum_probs=51.2

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +||.|++|++.|.....|..|++ +|++++        ||.|++|++.|.....|..|++..|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK--------PYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSC--------SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHH-HhCCCC--------CccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            58999999999999999999999 999999        999999999999999999998544443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.30  E-value=3.1e-12  Score=94.38  Aligned_cols=60  Identities=35%  Similarity=0.664  Sum_probs=53.4

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCC--CCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRS--GNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~--k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +++||.|++|++.|.....|..|++ +|.++  +        +|.|++|++.|.....|..|++..|.+.+
T Consensus        32 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~--------~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           32 GEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGK--------PYICQSCGKGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             SSCSEECSSSCCEESCHHHHHHHHH-HHCCCCCS--------SBCCSSSCCCBSSHHHHHHHHHHTSCCCS
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHH-HhcCCCCC--------ceECCCccchhCCHHHHHHHHHHhcCCCC
Confidence            3479999999999999999999999 99887  7        99999999999999999999975555543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.30  E-value=9.1e-13  Score=96.22  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=53.7

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +++|.|+.|++.|.....|..|++ +|.+++        ||.|++|++.|.....|..|+++|++.
T Consensus        32 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           32 QKPFQCRICMRNFSRSDHLTTHIR-THTGEK--------PFACDICGRKFARSDERKRHTKIHLRQ   88 (90)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHCCC--------CEECTTTCCEESSHHHHHHHHGGGGC-
T ss_pred             CCCccCCCCCcccCCHHHHHHHHH-HcCCCC--------CccCCCCCchhCCHHHHHHHHHHhccc
Confidence            479999999999999999999999 999999        999999999999999999999998864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.29  E-value=1.3e-12  Score=103.69  Aligned_cols=59  Identities=20%  Similarity=0.294  Sum_probs=55.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++||.|++||+.|.....|..|++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus        19 Gek~y~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   77 (133)
T 2lt7_A           19 GRVYYICIVCKRSYVCLTSLRRHFN-IHSWEK--------KYPCRYCEKVFPLAEYRTKHEIHHTGER   77 (133)
T ss_dssp             TEEEEEETTTCCEESCHHHHHHHHH-HHHCCS--------CEECSSSSCEESSHHHHHHHHHHHHTCC
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHHH-HcCCCC--------CeeCCccCeecccccchhhhccccCCCc
Confidence            5699999999999999999999999 999999        9999999999999999999999987653

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-12  Score=97.86  Aligned_cols=59  Identities=22%  Similarity=0.515  Sum_probs=55.2

Q ss_pred             CCCccccCccCcccC-ChHHHHHHHHhhcCC-CCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFS-SVTTLIEHVEKIHDR-SGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~-~~~~L~~H~~~~h~~-~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ++++|.|++|++.|. ....|..|++ +|.+ ++        ||.|++|++.|.+...|.+|+++||+.-
T Consensus        21 ~~~~~~C~~C~k~f~~~~~~L~~H~~-~h~~~~~--------~~~C~~C~k~F~~~~~L~~H~~~h~~~k   81 (98)
T 2gqj_A           21 ERGEAVCPTCNVVTRKTLVGLKKHME-VCQKLQD--------ALKCQHCRKQFKSKAGLNYHTMAEHSAK   81 (98)
T ss_dssp             TTSCCCCTTTCCCCSSCSHHHHHHHH-HHHHHHH--------HHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred             cCCCcCCCCCCCChhhhHHHHHHHHH-HHcCCCC--------CEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence            458999999999999 9999999999 9998 89        9999999999999999999999998753

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=1.9e-12  Score=98.45  Aligned_cols=56  Identities=23%  Similarity=0.354  Sum_probs=53.2

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      +++|.|++|++.|.....|..|++ +|.+++        +|.|++|++.|.....|.+|+++|+.
T Consensus        35 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           35 LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIK--------PYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CCSEECTTTSCEESSSHHHHHHHT-TTCCCC--------CEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-HcCCCC--------CeeCCCCcchhcCHHHHHHHHHHccc
Confidence            379999999999999999999999 999999        99999999999999999999998874

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=3e-12  Score=97.00  Aligned_cols=60  Identities=23%  Similarity=0.293  Sum_probs=53.9

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhc---CCCCCCCCCCCCcccccccCcccCChhhHHHH-HHhhcCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIH---DRSGNQARPKVTVDVCPKCSQGFCDPVALVEH-VERDHGG  285 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h---~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H-~~~hh~g  285 (289)
                      .|++||.|+.||+.|.....|..|++.+|   .+++        ||.|.+||+.|.....|..| +++|++.
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ek--------pf~C~~Cgk~F~~~~~L~~H~~r~Htge   77 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS--------SYVCVECNFLTKRYDALSEHNLKYHPGE   77 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSC--------CEEETTTTEEESSTHHHHTHHHHTSTTC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCC--------CcCCCCCCcccCCHHHHHHHHHHhcCCC
Confidence            37799999999999999999999997359   5678        99999999999999999999 7887764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.26  E-value=1.1e-12  Score=101.72  Aligned_cols=31  Identities=26%  Similarity=0.603  Sum_probs=25.3

Q ss_pred             CCCccccC--ccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCP--QCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|+  .|++.|.....|..|++ +|++++
T Consensus        89 ~~~~~~C~~~~C~~~f~~~~~L~~H~~-~H~~~k  121 (124)
T 1ubd_C           89 GDRPYVCPFDGCNKKFAQSTNLKSHIL-THAKAK  121 (124)
T ss_dssp             CCCCCCCCSTTCCCCCSSTTTTHHHHH-HHC---
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHH-HHcccc
Confidence            34799996  59999999999999999 999988

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=4.3e-12  Score=94.96  Aligned_cols=55  Identities=20%  Similarity=0.431  Sum_probs=51.3

Q ss_pred             CCccccCccCccc-CChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHH-HHhhcC
Q 023000          220 GGTELCPQCGARF-SSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEH-VERDHG  284 (289)
Q Consensus       220 ~kp~~C~~Cgk~F-~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H-~~~hh~  284 (289)
                      ++||.|++|++.| .....|..|++ +| +++        ||.|.+|++.|.....|..| +++|++
T Consensus        32 ~~~~~C~~C~k~F~~~~~~L~~H~~-~h-~~k--------~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           32 KGSVSCPTCQAVGRKTIEGLKKHME-NC-KQE--------MFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             TSCEECTTTCSCEESSHHHHHHHHH-HH-CCC--------CCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCcCCCCCCCCcccCHHHHHHHHH-HH-CCC--------CeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            4899999999999 99999999999 99 999        99999999999999999999 777653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.24  E-value=4.9e-12  Score=95.78  Aligned_cols=55  Identities=24%  Similarity=0.384  Sum_probs=49.8

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +||.|++|++.|.....|..|+  .|.+++        ||+|++|++.|.....|.+|++.+|.+
T Consensus        41 ~~~~C~~C~~~f~~~~~l~~H~--~H~~~~--------~~~C~~C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           41 NAAVCPYCSLRFFSPELKQEHE--SKCEYK--------KLTCLECMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             HSBCCTTTCCCBSSHHHHHHHH--HHCSTG--------GGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHH--HcCCCC--------CccCccccchhCCHHHHHHHHHHHcCC
Confidence            5899999999999999999997  399999        999999999999999999999744443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=5.5e-12  Score=88.65  Aligned_cols=56  Identities=27%  Similarity=0.510  Sum_probs=52.6

Q ss_pred             CCCccccC--ccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhc
Q 023000          219 TGGTELCP--QCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       219 ~~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      +++||.|+  .|++.|.....|..|++ +|.+++        ||.|++|++.|.....|.+|+++|+
T Consensus        16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           16 KMRPYACPVESCDRRFSRSDELTRHIR-IHTGQK--------PFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCEECSSTTBCCEESSHHHHHHHHH-HHHCCC--------CEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCccCCcCCCCCCccCCHHHHHHHHH-hhCCCC--------CeECCCCCchhCCHHHHHHHHHhcC
Confidence            56899997  69999999999999998 999999        9999999999999999999998874

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.22  E-value=6.9e-12  Score=91.59  Aligned_cols=56  Identities=21%  Similarity=0.317  Sum_probs=52.2

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ++||.|++|++.|.....|..|++ +|.+++        ||.|++|++.|.....|..|+++||+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEK--------PFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHCCC--------CEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHH-HcCCCC--------CccCCCCCCccCCHHHHHHHHHHhCC
Confidence            479999999999999999999998 899999        99999999999999999999988873

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2.3e-12  Score=98.74  Aligned_cols=55  Identities=20%  Similarity=0.204  Sum_probs=50.6

Q ss_pred             ccccCccCccc--CChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          222 TELCPQCGARF--SSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       222 p~~C~~Cgk~F--~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      .+.|++|++.|  .....|..|++ +|.+++        ||.|++|++.|.....|..|+++||..
T Consensus        50 ~~~C~~C~~~f~f~~~~~l~~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           50 HETDNNNPKRWSKPRKRSLLEMEG-KEDAQK--------VLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCCCCCSCCSSCCCCCCCCCCC-SCCCCS--------SCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CccCCCCCcccccccHHHHHHHhh-ccCCCc--------ceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            34599999999  89999999998 999999        999999999999999999999998754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=2.3e-11  Score=87.91  Aligned_cols=60  Identities=20%  Similarity=0.374  Sum_probs=53.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCC----CCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRS----GNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~----k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +++||.|.+|++.|.....|.+|++ .|.++    +        +|.|++|++.|.....|..|+++|++...
T Consensus        12 ~~k~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~~--------~~~C~~C~~~f~~~~~L~~H~~~h~~~~~   75 (86)
T 1x6h_A           12 GEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPA--------AFVCSKCGKTFTRRNTMARHADNCAGPDG   75 (86)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHH-HTTCSSCCCC--------CEECSSSCCEESCHHHHHHHHHHCCCCCS
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHH-HhcCCcCCCc--------ceECCCCCChhCCHHHHHHHHHHccCCCC
Confidence            5699999999999999999999998 65544    6        89999999999999999999999987543

>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=6.4e-12  Score=85.59  Aligned_cols=49  Identities=24%  Similarity=0.672  Sum_probs=43.7

Q ss_pred             CCCcCcccCcCCcCCCCCcccccccCCccCcccccCCCccccccCCCCC
Q 023000            3 TPQFPDLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAE   51 (289)
Q Consensus         3 ~~~~~~~g~~C~~~~C~~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~   51 (289)
                      +..--..+.+|++++|+++|||||.|+.|++.||++|+.++.|.|....
T Consensus         5 ~~k~k~~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~HR~~e~H~C~~~~   53 (63)
T 1x4v_A            5 SSGRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEG   53 (63)
T ss_dssp             CCCCCTTCCCCCSTTCCCCCSSCCBCSSSCCBCCHHHHSTTSSCCCSTT
T ss_pred             ccCCcccCCCCCccCCCCCCccceECCCCCcccCcccCCccCCcCCCCC
Confidence            4444557899999999999999999999999999999999999998654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.19  E-value=2.7e-11  Score=89.48  Aligned_cols=59  Identities=25%  Similarity=0.479  Sum_probs=55.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ++++||.|++|++.|.....|..|++ +|.+++        +|.|++|++.|.....|..|+++|++.
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~   62 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVK--------PYKCKTCDYAAADSSSLNKHLRIHSDE   62 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGG-GCCCCC--------SEECSSSCCEESSHHHHHHHHHHSCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHH-hcCCCC--------CEeCCCCCCccCCHHHHHHHHHHhCCC
Confidence            46789999999999999999999999 999999        999999999999999999999988764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=85.31  Aligned_cols=57  Identities=21%  Similarity=0.332  Sum_probs=52.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc-ccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP-KCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~-~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +++||.|++|++.|. ...|..|++ + ++++        ||.|+ +|++.|.....|..|+++|....
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~-~-~~~~--------p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQY-Q-CPRL--------PVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHH-H-CSSS--------EEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHH-H-cCCc--------CccCCcccCcccccHHHHHHHHHhhcccC
Confidence            679999999999999 999999998 7 8999        99999 99999999999999999876543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.18  E-value=2.7e-11  Score=89.27  Aligned_cols=58  Identities=26%  Similarity=0.413  Sum_probs=55.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ++++|.|++|++.|.....|..|++ +|.+++        +|.|++|++.|.....|..|+++|++.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKL-SHSGEK--------PYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHH-HSCSSC--------SEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             CCCCeECCCCCCccCChHHHHHHHH-hcCCCC--------CCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            6689999999999999999999999 999999        999999999999999999999998865

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.17  E-value=3.3e-11  Score=84.46  Aligned_cols=56  Identities=20%  Similarity=0.420  Sum_probs=51.9

Q ss_pred             CCCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHHHhh
Q 023000          218 GTGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHVERD  282 (289)
Q Consensus       218 ~~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~~~h  282 (289)
                      +..++|.|..  |++.|.....|..|++ +|++++        ||+|++  |++.|.....|.+|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEK--------PFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHH-HHSSSC--------SEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHH-hcCCCC--------CccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4668999998  9999999999999999 999999        999965  999999999999999765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.16  E-value=4.4e-11  Score=85.08  Aligned_cols=60  Identities=25%  Similarity=0.365  Sum_probs=55.0

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ++++|.|..  |++.|.....|..|++.+|.+++        ||.|++  |++.|....+|..|+++|++..
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~--------~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   67 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK--------SFSCPEPACGKSFNFKKHLKEHMKLHSDTR   67 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCC--------CEECSCTTTCCEESSHHHHHHHHHHHHTSC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCC--------CeECCCCCCcCccCCHHHHHHHHHHhCCCC
Confidence            568999987  99999999999999885699999        999999  9999999999999999998754

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=4.2e-11  Score=79.42  Aligned_cols=48  Identities=25%  Similarity=0.502  Sum_probs=43.7

Q ss_pred             CCCCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCC
Q 023000          216 SSGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCD  271 (289)
Q Consensus       216 ~~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~  271 (289)
                      +..+++||.|++|++.|.....|.+|++.+|.+++        ||+|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k--------~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER--------PHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCC--------CCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCC--------CccCCCCCCCCCC
Confidence            44578999999999999999999999864899999        9999999999986

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.15  E-value=3e-11  Score=87.81  Aligned_cols=56  Identities=25%  Similarity=0.456  Sum_probs=52.0

Q ss_pred             CCCccccC--ccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhc
Q 023000          219 TGGTELCP--QCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       219 ~~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      +++||.|+  .|++.|.....|..|++ +|.+++        ||.|++|++.|.....|..|+++|.
T Consensus        32 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           32 GEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHR--------PFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             SSCCEECCSTTTCCEESSHHHHHHHHH-HHHCCC--------CEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             CCCCcCCCCCCCCCccCCHHHHHHHHH-HcCCCC--------CccCCCCCcccCCHHHHHHHHHhhC
Confidence            34799997  69999999999999998 999999        9999999999999999999998873

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.15  E-value=2.1e-11  Score=95.35  Aligned_cols=57  Identities=28%  Similarity=0.547  Sum_probs=52.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +++||.|++||+.|.....|..|++ +|  ++        ||.|++|++.|....+|.+|+++||+.-
T Consensus        71 ~~~~~~C~~C~k~f~~~~~l~~H~~-~H--~~--------~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           71 AISQFVCPLCLMPFSSSVSLKQHIR-YT--EH--------TKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             HHCSEECTTTCCEESSHHHHHHHHH-HT--CC--------CCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHH-HC--CC--------CCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            3489999999999999999999999 88  78        9999999999999999999999998753

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.12  E-value=4.9e-11  Score=91.37  Aligned_cols=58  Identities=24%  Similarity=0.399  Sum_probs=54.3

Q ss_pred             CCccccC--ccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          220 GGTELCP--QCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       220 ~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ++||.|+  .|++.|.....|..|++ +|.+++        +|.|++|++.|.....|..|+++|++..
T Consensus        34 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (119)
T 2jp9_A           34 EKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK--------PFQCKTCQRKFSRSDHLKTHTRTHTGEK   93 (119)
T ss_dssp             TCCEECCSTTCCCEESSHHHHHHHHH-HHHCCC--------CEECTTTCCEESCHHHHHHHHHHHHTCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHH-HcCCCC--------CccCCccCchhCCHHHHHHHHHHhcCCC
Confidence            3799999  79999999999999999 999999        9999999999999999999999988753

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.12  E-value=1.4e-10  Score=87.17  Aligned_cols=59  Identities=22%  Similarity=0.366  Sum_probs=55.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ++++|.|++|++.|.....|..|++ +|.+++        +|.|++|++.|.....|..|+++|++..
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~~   72 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHER-THTDER--------PYTCDICHKAFRRQDHLRDHRYIHSKEK   72 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHH-HHCCSC--------CCBCSSSCCBCSCHHHHHHHGGGSCCCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHH-HcCCCC--------CcCCCCccchhCCHHHHHHHHHHhCCCC
Confidence            5689999999999999999999999 999999        9999999999999999999999887653

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=6.9e-11  Score=89.63  Aligned_cols=60  Identities=25%  Similarity=0.347  Sum_probs=55.5

Q ss_pred             CCCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          217 SGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       217 ~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      .++++||.| .|++.|.....|..|++ .|.+++        +|.|++|++.|.....|..|+++|++..
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~~   64 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMS-MHLGLR--------PYGCGVCGKKFKMKHHLVGHMKIHTGIK   64 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHH-HHSCCC--------SEECTTTSCEESSSHHHHHHHTTTCCCC
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHH-HcCCCc--------CccCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            347799999 99999999999999999 999999        9999999999999999999999887643

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.11  E-value=1.6e-10  Score=85.76  Aligned_cols=57  Identities=23%  Similarity=0.407  Sum_probs=52.7

Q ss_pred             CCCccccC--ccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          219 TGGTELCP--QCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       219 ~~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ++++|.|+  .|++.|.....|..|++ +|.+++        ||.|++|++.|.....|..|+++|++
T Consensus        42 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           42 GEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAK--------PFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCCCEECCSSSCCCEESSHHHHHHHHH-HHTSCC--------SCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCCeeCCCCCCCCccCCHHHHHHHHH-HhCCCC--------CeECCCCcCccCCHHHHHHHHHHhCC
Confidence            34899996  69999999999999998 999999        99999999999999999999998864

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.09  E-value=1.7e-10  Score=88.83  Aligned_cols=58  Identities=24%  Similarity=0.444  Sum_probs=52.3

Q ss_pred             CCccccCccCcccCChHHHHHHHHhh---cCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKI---HDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~---h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ++||.|+.|++.|.....|..|++ .   |.+++        +|.|++|++.|.....|..|+++|++..
T Consensus        33 ~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (124)
T 2dlq_A           33 EKPFECPKCGKCYFRKENLLEHEA-RNCMNRSEQ--------VFTCSVCQETFRRRMELRLHMVSHTGEM   93 (124)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHH-HCCCCSCCC--------CEECSSSCCEESSHHHHHHHHHHHSSSC
T ss_pred             CCCeECCCCCchhcCHHHHHHHHh-hhhcCCCCC--------CeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            479999999999999999999988 5   46777        9999999999999999999999987653

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.09  E-value=7.3e-11  Score=85.90  Aligned_cols=59  Identities=27%  Similarity=0.534  Sum_probs=53.7

Q ss_pred             CCCccccC--ccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCP--QCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++||.|+  .|++.|.....|..|++ +|.+++        +|.|++|++.|.....|..|+++|++..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~~   61 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIR-IHTGQK--------PFQCRICMRNFSRSDHLTTHIRTHTGEK   61 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHH-HHHCCC--------CEECTTTCCEESCHHHHHHHHHHHHCCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHH-HhCCCC--------CccCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            35899998  69999999999999999 999999        9999999999999999999999988653

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.05  E-value=1.4e-10  Score=82.81  Aligned_cols=56  Identities=25%  Similarity=0.452  Sum_probs=52.9

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ||.|+.|++.|.....|..|++ +|.+++        ||.|++|++.|.....|..|+++|++..
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~~   56 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLL-IHSDTR--------PYPCQYCGKRFHQKSDMKKHTFIHTGEK   56 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH-HHHTCC--------CEECSSSCCEESSHHHHHHHHHHHHTCC
T ss_pred             CccCCCCcccccCchhHHHHHH-HcCCCC--------CeeCCcCChhhCCHHHHHHHHHHhcCCC
Confidence            6899999999999999999999 999999        9999999999999999999999988653

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=2.8e-10  Score=73.30  Aligned_cols=43  Identities=26%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             CCCCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCc
Q 023000          216 SSGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQ  267 (289)
Q Consensus       216 ~~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k  267 (289)
                      ...+++||.|++|++.|.....|.+|++ +|++++        ||.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEK--------PYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGG-GSCSCC--------CCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHH-hcCCCC--------CccCCCCCC
Confidence            3447799999999999999999999999 999999        999999986

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.00  E-value=2.2e-10  Score=82.23  Aligned_cols=54  Identities=28%  Similarity=0.508  Sum_probs=40.3

Q ss_pred             cccc--CccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHHHhhcC
Q 023000          222 TELC--PQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       222 p~~C--~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||.|  +.|++.|.....|..|++ +|.+++        ||.|++  |++.|.....|.+|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQF-SHTQQL--------PYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH-HHHTTC--------CEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHH-HhCCCC--------CeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            5677  777777777777777776 777777        777776  77777777777777777654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=7.3e-10  Score=81.51  Aligned_cols=58  Identities=26%  Similarity=0.462  Sum_probs=52.6

Q ss_pred             CccccCccCcccCChHHHHHHHHhh-cCCCCCCCCCCCCc--------ccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKI-HDRSGNQARPKVTV--------DVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~-h~~~k~~~~~~~~p--------~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      ..|.|+.|++.|.....|.+|++ + |.+++        +        |.|++|++.|.....|..|+++|++...
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~-~~H~~~~--------~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   90 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVT-MEHVGGP--------EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS   90 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHH-HTTTCCT--------TCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC
T ss_pred             CCCcccccccccCCHHHHHHHHH-HhccCCC--------CCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            35789999999999999999998 7 99887        6        9999999999999999999999987543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.97  E-value=1.9e-11  Score=89.20  Aligned_cols=57  Identities=18%  Similarity=0.149  Sum_probs=51.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +++||.|++|++.|.....|..|++ +|.+ .        +|.|+.|++.|.....|..|++.+|+.
T Consensus        28 ~~~~~~C~~C~k~f~~~~~L~~H~~-~h~~-~--------~~~c~~C~~~f~~~~~L~~H~~~~h~~   84 (88)
T 1llm_C           28 GEKPFACDICGRKFARSDERKRHRD-IQHI-L--------PILEDKVEELLSKNYHLENEVARLKKL   84 (88)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHH-HHTH-H--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHH-HhCC-C--------cchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3489999999999999999999998 7775 6        899999999999999999999887753

>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=98.94  E-value=3e-10  Score=82.49  Aligned_cols=42  Identities=36%  Similarity=0.910  Sum_probs=39.2

Q ss_pred             cCcCCcCCCCCcccccccCCccCcccccCCCccccccCCCCC
Q 023000           10 GKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAE   51 (289)
Q Consensus        10 g~~C~~~~C~~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~   51 (289)
                      -.+|++++|+++|||||.|+.|++.||.+||.++.|.|....
T Consensus        25 ~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~HR~~e~H~C~~~~   66 (86)
T 1wfe_A           25 SYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLE   66 (86)
T ss_dssp             CEECCSTTCCCEESSCEECTTTCCEECGGGCSTGGGTCSSSS
T ss_pred             CCCCCCcCCCCCCccceECCCCCcccccccCCccCCCCCCCc
Confidence            358999999999999999999999999999999999998764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.93  E-value=9.2e-10  Score=78.88  Aligned_cols=53  Identities=30%  Similarity=0.417  Sum_probs=48.4

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc---cCcccCChhhHHHHHHhhc
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK---CSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~---C~k~F~~~~~L~~H~~~hh  283 (289)
                      +++||.|+.  |++.|.....|.+|++ +|++           |.|++   |++.|.....|..|+++||
T Consensus        28 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~-----------~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           28 QQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG-----------YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             TTCCEECCSTTCCCEESSHHHHHHHHH-HHHS-----------EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCeeCCCCCCcCccCCHHHHHHHHH-HhCC-----------CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            348999988  9999999999999998 8874           78988   9999999999999999876

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=1.2e-09  Score=69.11  Aligned_cols=40  Identities=30%  Similarity=0.453  Sum_probs=37.8

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCS  266 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~  266 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        +|.|++||
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~--------~~~C~~cg   45 (45)
T 2epq_A            6 SGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSV--------GKSGPSSG   45 (45)
T ss_dssp             SSCCSSEETTTTEECSCHHHHHHHHH-HHSCCC--------CCCCCCCC
T ss_pred             CCCCCCcCCCCCcccCCHHHHHHHHH-HccCCC--------CCCCcCCC
Confidence            46799999999999999999999999 999999        99999996

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.89  E-value=1.9e-09  Score=81.22  Aligned_cols=56  Identities=27%  Similarity=0.405  Sum_probs=50.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      .+++||.|++|++.|.....|..|++ +|  ++        ||.|++|++.|.....|..|++ |++.
T Consensus        12 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~H--~~--------~~~C~~C~~~f~~~~~l~~H~~-H~~~   67 (107)
T 1wjp_A           12 ENKEVYQCRLCNAKLSSLLEQGSHER-LC--RN--------AAVCPYCSLRFFSPELKQEHES-KCEY   67 (107)
T ss_dssp             CCCCCCBCTTTCCBCSSHHHHHHHHH-HH--HH--------SBCCTTTCCCBSSHHHHHHHHH-HCST
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHH-HC--CC--------CccCCCCCCccCCHHHHHHHHH-cCCC
Confidence            36799999999999999999999999 88  46        9999999999999999999994 6543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.87  E-value=4.2e-09  Score=77.92  Aligned_cols=59  Identities=19%  Similarity=0.410  Sum_probs=54.2

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc--ccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      .+++|.|..  |++.|.....|..|++ +|.+++        +|.|+  .|++.|.....|..|+++|++..
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   74 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEK--------PYKCTWEGCDWRFARSDELTRHYRKHTGAK   74 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHH-HHSCCC--------CEECCSSSCCCEESSHHHHHHHHHHHTSCC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHH-HhCCCC--------CeeCCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            568999996  9999999999999999 999999        99996  69999999999999999987654

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.84  E-value=5.6e-10  Score=76.02  Aligned_cols=31  Identities=23%  Similarity=0.570  Sum_probs=28.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|++||++|.+.+.|.+|++ +|+|++
T Consensus        29 ~ekp~~C~~C~k~F~~~~~L~~H~~-~Htgep   59 (60)
T 4gzn_C           29 GYRPRSCPECGKCFRDQSEVNRHLK-VHQNKP   59 (60)
T ss_dssp             TCCCEECTTTCCEESSHHHHHHHGG-GGSCC-
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHhC-ccCCCC
Confidence            5599999999999999999999999 999875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=4.3e-09  Score=66.83  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=36.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2ytq_A            8 AGEKPYGCSECGKAFSSKSYLIIHMR-THSGEK--------PSGPSSG   46 (46)
T ss_dssp             SCCCSCBCSSSCCBCSCHHHHHHHHT-TTCCSC--------SSCCCCC
T ss_pred             CCCCCcCCCccChhhCChHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36799999999999999999999998 999999        9999987

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.82  E-value=3.9e-09  Score=76.39  Aligned_cols=57  Identities=23%  Similarity=0.484  Sum_probs=53.0

Q ss_pred             CccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc--ccCcccCChhhHHHHHHhhcCCC
Q 023000          221 GTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       221 kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ++|.|+.  |++.|.....|..|++ +|.+++        ||.|+  .|++.|.....|..|+++|++..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~--------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   64 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLR-THTGEK--------PYHCDWDGCGWKFARSDELTRHYRKHTGHR   64 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHT-TSCSSC--------CEECCSTTTCCEESSHHHHHHHHHHHHCCC
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHH-hcCCCC--------CcCCCCCCCCCccCCHHHHHHHHHHcCCCC
Confidence            6899999  9999999999999999 999999        99997  69999999999999999988653

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.82  E-value=4.6e-09  Score=66.72  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=36.6

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2el6_A            8 AGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHG-GGCCSS--------CCSCCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            46799999999999999999999998 999999        9999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=5.1e-09  Score=66.48  Aligned_cols=39  Identities=15%  Similarity=0.218  Sum_probs=36.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2elz_A            8 SVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEK--------TSGPSSG   46 (46)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHGG-GGGSCC--------CCCSCCC
T ss_pred             CCCCCeeCcccCchhCCHHHHHHHHH-hcCCCC--------CCCCCCC
Confidence            36799999999999999999999999 999999        9999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=4.7e-09  Score=66.60  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=36.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2em7_A            8 TGEKPYKCEECGKGFICRRDLYTHHM-VHTGEK--------PSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSCCEESCHHHHHHHGG-GGTTCC--------CSSTTCC
T ss_pred             CCCcCccCCCccchhCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=3.9e-09  Score=66.99  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2ytn_A            8 TGKKPYKCNECGKVFTQNSHLARHRG-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             SCCSSCBCTTTCCBCSSHHHHHHHGG-GTSCCC--------CCSCCCC
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHhh-hcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.3e-09  Score=66.77  Aligned_cols=39  Identities=18%  Similarity=0.172  Sum_probs=36.6

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2ep0_A            8 TGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             TTCCSEECSSSCCEESSHHHHHHHHT-TTSSSC--------CCSCCCC
T ss_pred             CCCCCeeCcccCcccCChHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            46799999999999999999999998 999999        9999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.8e-09  Score=67.73  Aligned_cols=40  Identities=23%  Similarity=0.300  Sum_probs=37.0

Q ss_pred             CCCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          217 SGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       217 ~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      ..+++||.|++|++.|.....|..|++ +|++++        ||.|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWI-THTREK--------PSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHT-HHHHCC--------CCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            346799999999999999999999999 999999        9999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=5.4e-09  Score=66.32  Aligned_cols=39  Identities=23%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2epz_A            8 TGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSBCCTTTCCCBSSHHHHHHHHT-TTTTCC--------CCSSCCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36799999999999999999999998 999999        9999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.80  E-value=4.3e-09  Score=66.86  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=35.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQR-VHTGEK--------PSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHH-HHSSCC--------CSSCCCC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            5699999999999999999999998 999999        9999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.80  E-value=5.5e-09  Score=66.32  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2ely_A            8 TGEKPFKCVECGKGFSRRSALNVHHK-LHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSBCCSSSCCCBSSTTHHHHHHH-HHSCCS--------SCSCCCC
T ss_pred             CCCCCcccCccCcccCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36699999999999999999999999 999999        9999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.5e-09  Score=66.82  Aligned_cols=39  Identities=15%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2ytm_A            8 TGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQR--------PSGPSSG   46 (46)
T ss_dssp             SSCCSSSBTTTTBCCSSHHHHHHHHH-HHHSCC--------CCCCCCC
T ss_pred             CCCCCcCCCCCCchhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36799999999999999999999999 999999        9999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=5.6e-09  Score=66.24  Aligned_cols=39  Identities=15%  Similarity=0.201  Sum_probs=36.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2enc_A            8 SGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHH-HSCCSS--------CCSSCCC
T ss_pred             CCCCCcCCCCCCCcCCChHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36799999999999999999999998 999999        9999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=3.8e-09  Score=66.36  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++||+.|...+.|.+|++ +|++++        ||.|++|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   44 (44)
T 2emx_A            6 SGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEK--------PSGPSSG   44 (44)
T ss_dssp             SSCCCEECSSSSCEESSHHHHHHHHH-HHTSSC--------SCSCCCC
T ss_pred             CCCcCccCCCCCcccCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36699999999999999999999999 999999        9999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4e-09  Score=66.93  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++||+.|.....|..|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2emy_A            8 TGENPYECHECGKAFSRKYQLISHQR-THAGEK--------PSGPSSG   46 (46)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHH-HHTTSC--------CSCSSCC
T ss_pred             CCCcCcCCCCCCcccCcHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36699999999999999999999999 999999        9999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.79  E-value=4.1e-09  Score=66.79  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2el4_A            8 TGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHGG-GSSSCC--------CSCCTTC
T ss_pred             CCCCceECCCCCchhCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=3.7e-09  Score=67.14  Aligned_cols=38  Identities=26%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~c   46 (46)
T 2emf_A            9 GGKHFECTECGKAFTRKSTLSMHQK-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             SSCCEECSSSCCEESCHHHHHHHGG-GTSCSS--------CSCCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            6699999999999999999999999 999999        9999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.2e-09  Score=66.74  Aligned_cols=39  Identities=21%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2eoe_A            8 TGEKPYKCNECGKVFTQNSHLANHQR-IHTGVK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSSEETTTTEECSSHHHHHHHHG-GGSCCC--------SCSSCCC
T ss_pred             CCCCCeECCCcChhhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            35699999999999999999999998 999999        9999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.79  E-value=4.8e-09  Score=66.53  Aligned_cols=38  Identities=21%  Similarity=0.229  Sum_probs=35.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSLRLHQN-VHVGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHGG-GGSSSS--------CSCSSCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHH-HcCCCC--------CcCCCCC
Confidence            6699999999999999999999998 999999        9999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.7e-09  Score=66.63  Aligned_cols=39  Identities=15%  Similarity=0.218  Sum_probs=36.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2em8_A            8 SGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEK--------LSGPSSG   46 (46)
T ss_dssp             CSCCSEECSSSCCEESSHHHHHHHHH-HHHCCC--------CCCSCCC
T ss_pred             CCCCCeECcccCchhCCHHHHHHHHH-HHcCCC--------CCCCCCC
Confidence            36799999999999999999999999 999999        9999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.9e-09  Score=66.45  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2eq4_A            8 TGEKLYNCKECGKSFSRAPCLLKHER-LHSGEK--------PSGPSSG   46 (46)
T ss_dssp             SCCCCCCBTTTTBCCSCHHHHHHHHH-HCCSSS--------CCCCCCC
T ss_pred             CCCCCeECCCCCCccCchHHHHHHHH-hcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.2e-09  Score=66.74  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=36.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHLIQHQR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-HHSCCC--------TTSSSCC
T ss_pred             CCCCeeCCCCChhhCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            6699999999999999999999998 999999        9999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=5.1e-09  Score=66.44  Aligned_cols=38  Identities=18%  Similarity=0.241  Sum_probs=35.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSM-VHTAEK--------PSGPSSG   46 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHH-HTTCCC--------SSSCCCC
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            5689999999999999999999998 999999        9999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=4.1e-09  Score=66.89  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~c   46 (46)
T 2ytk_A            8 SGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             SSSCSEECSSSCCEESSHHHHHHHHH-HHSSSS--------CSSCCCC
T ss_pred             CCCCCEeCCcCCCccCCHHHHHHHHH-HHCCCC--------CCCCCCC
Confidence            35699999999999999999999999 999999        9999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=4.9e-09  Score=66.48  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=36.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSLSVHQR-IHSGKK--------PSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHG-GGSSCC--------CSCSSCC
T ss_pred             CCCCeeCCCcCCccCCHHHHHHHHH-HhcCCC--------CCCCCCC
Confidence            6699999999999999999999998 999999        9999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=4.3e-09  Score=66.80  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|...+.|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2ene_A            8 TGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCSSSEECSSSCCEESSHHHHHHHHT-TTCCCC--------CCSCCCC
T ss_pred             CCCCCeECCCCCchhCChHHHHHHHh-hcCCCC--------CCCCCCC
Confidence            36699999999999999999999999 999999        9999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=4.1e-09  Score=66.87  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~c   46 (46)
T 2eq0_A            8 TGEKPYKCHECGKVFRRNSHLARHQL-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             TCCCCEECTTTCCEESSHHHHHHHHT-TTCCCC--------CSCCSCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=5.2e-09  Score=66.31  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2eop_A            8 TGEKPHECRECGKSFSFNSQLIVHQR-IHTGEN--------PSGPSSG   46 (46)
T ss_dssp             CCCCSCBCTTTCCBCSSHHHHHHHHT-TTTTSC--------CSCCCCC
T ss_pred             CCCCCeeCCCCCchhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=7e-09  Score=65.76  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2ytd_A            8 SGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYR--------PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHH-HHTCCC--------SSCSSCC
T ss_pred             CCCcCeECCCCCCeeCChHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=5.8e-09  Score=66.09  Aligned_cols=38  Identities=18%  Similarity=0.227  Sum_probs=35.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++||+.|.....|.+|++ +|++++        ||+|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2eov_A            9 GEKPYKCSDCGKSFTWKSRLRIHQK-CHTGER--------HSGPSSG   46 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHH-HHSCCS--------SCCSCCC
T ss_pred             CCCCccCCccChhhCCHHHHHHHHH-hcCCCC--------CCCCCCC
Confidence            5689999999999999999999998 999999        9999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5e-09  Score=66.45  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~c   46 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQ-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-TTSSCC--------SCCSCCC
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            5699999999999999999999999 999999        9999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=6e-09  Score=66.07  Aligned_cols=39  Identities=21%  Similarity=0.260  Sum_probs=36.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||+|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2en6_A            8 SGEKPYGCNECGKTFSQKSILSAHQR-THTGEK--------PSGPSSG   46 (46)
T ss_dssp             CSSCCEEETTTTEEESSHHHHHHHHH-HHSSCC--------CSSSCCC
T ss_pred             CCCcCeECCCCCcccCchHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36799999999999999999999999 999999        9999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.77  E-value=4.6e-09  Score=66.64  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=35.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||+|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQK-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHT-GGGCCC--------CCSSSCC
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHH-hcCCCC--------CCCCCCC
Confidence            6699999999999999999999998 999999        9999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=7.6e-09  Score=65.51  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2ytr_A            8 TGEKPYKCNECGKAFSQTSKLARHQR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             SSCCTTCCTTTCCCCSSHHHHHHHHT-TTTTCS--------CCCSCCC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.77  E-value=8.3e-09  Score=65.34  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2em9_A            8 TGEKPYNCKECGKSFRWASCLLKHQR-VHSGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHGG-GGTSCC--------CCSTTCC
T ss_pred             CCCcCeECCccccccCChHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5.8e-09  Score=66.16  Aligned_cols=39  Identities=18%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2ysp_A            8 TGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGER--------PSGPSSG   46 (46)
T ss_dssp             SSCCSEEETTTTEEESCHHHHHHHHT-TSCSCC--------SSCCSCC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHH-hhCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.77  E-value=3.6e-09  Score=74.98  Aligned_cols=43  Identities=23%  Similarity=0.461  Sum_probs=40.2

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccC
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFC  270 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~  270 (289)
                      +++||.|++  |++.|.....|.+|++ +|++++        ||.|++|++.|.
T Consensus        35 ~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C~k~F~   79 (79)
T 2dlk_A           35 HQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDTR--------DYICEFSGPSSG   79 (79)
T ss_dssp             SCCCEECSCTTTCCEESSHHHHHHHHH-HHHTSC--------CCSCCSSSCCCC
T ss_pred             CCCCeECCCCCCcCccCCHHHHHHHHH-HhCCCC--------CeeCCCCCCCCC
Confidence            348999999  9999999999999999 999999        999999999984

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5.6e-09  Score=66.24  Aligned_cols=38  Identities=24%  Similarity=0.457  Sum_probs=35.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~c   46 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNLIKHQK-IHTKQK--------PSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHH-HTSCCC--------CSSCSCC
T ss_pred             CCcCeECCCCChhhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            5699999999999999999999998 999999        9999986

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5.9e-09  Score=66.05  Aligned_cols=39  Identities=21%  Similarity=0.334  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2eme_A            8 SGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHG-GGCCCS--------CCSSCCC
T ss_pred             CCCCCeECCCCChhhCCHHHHHHHHH-hcCCCC--------CCCCCCC
Confidence            35699999999999999999999998 999999        9999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5.3e-09  Score=66.28  Aligned_cols=39  Identities=21%  Similarity=0.241  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++||+.|.+...|..|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2epw_A            8 TGEKPCKCTECGKAFCWKSQLIMHQR-THVDDK--------HSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSSHHHHHHHH-HCCSCC--------CSCCCCC
T ss_pred             CCCCCeeCCCCCCccCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=5e-09  Score=66.54  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++||+.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2em5_A            8 SSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCSCSEECSSSCCEESSHHHHHHHHT-TTSCSC--------CSSCCCC
T ss_pred             CCCCCeECCcCCCccCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            35689999999999999999999998 999999        9999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.2e-09  Score=66.83  Aligned_cols=39  Identities=23%  Similarity=0.396  Sum_probs=36.2

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~c   46 (46)
T 2emh_A            8 TGERPYICTVCGKAFTDRSNLIKHQK-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             SCCCSEECTTTCCEESSHHHHHHHHH-HHHCSS--------CSSSCCC
T ss_pred             CCCCCcCCCCCCchhCCHHHHHHHHH-hcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.4e-09  Score=66.78  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=36.1

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++||+.|...+.|..|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2eoo_A            8 SGERPYGCNECGKNFGRHSHLIEHLK-RHFREK--------SSGPSSG   46 (46)
T ss_dssp             SCCCCEECSSSCCEESSHHHHHHHHH-HHHSTT--------SSCCSCC
T ss_pred             CCCCCEEccccCcccCCHHHHHHHHH-HHcCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=5.6e-09  Score=66.22  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=35.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||+|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVSLIEHQV-LHMGQK--------NSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHH-HHSCCS--------CCCTTCC
T ss_pred             CCCCEEccccChhhCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            5689999999999999999999999 999999        9999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=5.6e-09  Score=66.17  Aligned_cols=39  Identities=18%  Similarity=0.339  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||+|+.|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2en8_A            8 SGEKSHTCDECGKNFCYISALRIHQR-VHMGEK--------CSGPSSG   46 (46)
T ss_dssp             CCCSSEECTTTCCEESSHHHHHHHHT-TTCCSC--------SSCCSCC
T ss_pred             CCCCCeECCCcCcccCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=1.8e-09  Score=82.30  Aligned_cols=59  Identities=15%  Similarity=0.269  Sum_probs=52.1

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhh--cCCCCCCCCCCCCcc-cccccCccc--CChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKI--HDRSGNQARPKVTVD-VCPKCSQGF--CDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~--h~~~k~~~~~~~~p~-~C~~C~k~F--~~~~~L~~H~~~hh~g~  286 (289)
                      +++||.|++|++.|.....|..|++ +  |.+++        ++ .|++|++.|  .....|..|+++|++..
T Consensus        16 ~~~~~~C~~C~k~f~~~~~L~~H~~-~~~h~~~~--------~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~   79 (115)
T 2dmi_A           16 GASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDD--------NHETDNNNPKRWSKPRKRSLLEMEGKEDAQK   79 (115)
T ss_dssp             CCCSEEBSSSSCEESSHHHHHHHHH-HTCCCBCS--------CCCCCCCCCSCCSSCCCCCCCCCCCSCCCCS
T ss_pred             CCCCEECCccCchhcCHHHHHHHHH-HhCccccC--------CCccCCCCCcccccccHHHHHHHhhccCCCc
Confidence            5699999999999999999999998 8  77777        55 499999999  89999999998887643

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.7e-09  Score=66.58  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=35.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSLTTHQV-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHHH-HHHCCS--------CCSCCCC
T ss_pred             CCcCeECCCCCchhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            5699999999999999999999999 999999        9999987

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.75  E-value=1.7e-09  Score=71.41  Aligned_cols=50  Identities=16%  Similarity=0.156  Sum_probs=44.4

Q ss_pred             CcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          229 GARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       229 gk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      ++.|.....|..|++ +|++++        ||.|++|++.|.....|..|+++|++...
T Consensus         3 ~k~~~~~~~l~~h~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A            3 AKRAKHPPGTEKPRS-RSQSEQ--------PATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CCCCSCSSCCCCCHH-HHTSSC--------CEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             ccccCCCcchhhHHH-hcCCCC--------CccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            467888888999988 999999        99999999999999999999999887643

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.5e-09  Score=66.67  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=36.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2yu8_A            8 TGEKPYKCNECGKVFTQNSHLARHRR-VHTGGK--------PSGPSSG   46 (46)
T ss_dssp             CCCSSEECSSSCCEESSSHHHHHHTH-HHHSCC--------CSCSCCC
T ss_pred             CCCCCeECCcCCchhCCHHHHHHHHH-hcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=6.5e-09  Score=65.91  Aligned_cols=39  Identities=21%  Similarity=0.339  Sum_probs=36.2

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~C   46 (46)
T 2en1_A            8 SGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGG-GGSCCC--------CSCCCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=1.1e-09  Score=76.25  Aligned_cols=36  Identities=11%  Similarity=0.110  Sum_probs=33.2

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +||.|++|++.|.....|..|++ +|++++        ||.|++|
T Consensus        38 ~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~--------~~~C~~C   73 (73)
T 2ctu_A           38 KTPMCEKCRKDSCQEAALNKDEG-NESGKK--------TSGPSSG   73 (73)
T ss_dssp             SSCCCHHHHHTCSCCCSSCCCSS-CCCCCC--------CSSCCCC
T ss_pred             CCCCCCCCChhhcCHHHHHHHHH-hhcCCC--------CCCCCCC
Confidence            68999999999999999999988 899999        9999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=4.6e-09  Score=66.64  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||+|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   46 (46)
T 2ytg_A            8 TGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEK--------PSGPSSG   46 (46)
T ss_dssp             SSCCSEECTTTCCEESSSHHHHTTGG-GGSSCC--------SSCSCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            36699999999999999999999998 999999        9999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=8.5e-09  Score=65.36  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=35.5

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~~   46 (46)
T 2ep3_A            9 GEKPYRCAECGKAFTDRSNLFTHQK-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHT-TTTTSC--------CCCTTCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHH-HcCCCC--------CCCCCCC
Confidence            5699999999999999999999998 999999        9999875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.5e-08  Score=64.22  Aligned_cols=39  Identities=21%  Similarity=0.306  Sum_probs=35.9

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~~   46 (46)
T 2em2_A            8 SGEKPFKCKECGKAFRQNIHLASHLR-IHTGEK--------PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHH-HHCCCC--------SSCSSCC
T ss_pred             CCCCCEECCcCCchhCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            36699999999999999999999999 999999        9999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.9e-08  Score=63.81  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=35.9

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|++|++.|.....|..|++.+|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k--------~~~C~~C   47 (47)
T 2epx_A            8 TGKKPYECIECGKAFIQNTSLIRHWRYYHTGEK--------PSGPSSG   47 (47)
T ss_dssp             CCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSC--------SSSCCCC
T ss_pred             CCCCCEECCccCchhCChHHHHHHhHhhcCCCC--------CCCCCCC
Confidence            366999999999999999999999765799999        9999987

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.5e-08  Score=63.89  Aligned_cols=39  Identities=21%  Similarity=0.361  Sum_probs=35.4

Q ss_pred             CCCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          217 SGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       217 ~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      ..+++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEK--------SGPSSG   45 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHT-TTSSCC--------CCCSCC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHH-HhCCCC--------CCCCCC
Confidence            346799999999999999999999998 999999        999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=1.9e-08  Score=62.91  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=34.9

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   43 (43)
T 2yrm_A            6 SGNGAFFCNECDCRFSEEASLKRHTL-QTHSDK--------SGPSSG   43 (43)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHHH-HHTCTT--------CSSSCC
T ss_pred             CCCCCEECCCCCCeeCChHHHHHHHH-hhCCCC--------CccCCC
Confidence            36699999999999999999999999 999999        999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=2.5e-08  Score=63.25  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=35.1

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||+|++
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2eom_A            8 HGERGHRCSDCGKFFLQASNFIQHRR-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCSSCCCSSSCCCCSSHHHHHHHHH-HHSSCC--------CSSCCC
T ss_pred             CCCCCcCCCCCCCeeCChHHHHHHHH-HhCCCC--------CCCCCC
Confidence            46799999999999999999999999 999999        999974

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.67  E-value=6.2e-09  Score=78.60  Aligned_cols=40  Identities=15%  Similarity=0.204  Sum_probs=36.1

Q ss_pred             CCCccccCccCcccCChHHHHHH-HHhhcCCCCCCCCCCCCcccccccCc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEH-VEKIHDRSGNQARPKVTVDVCPKCSQ  267 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H-~~~~h~~~k~~~~~~~~p~~C~~C~k  267 (289)
                      +++||.|.+||+.|.....|..| ++ +|++++        ||.|.++..
T Consensus        47 ~ekpf~C~~Cgk~F~~~~~L~~H~~r-~Htgek--------py~C~~~~~   87 (102)
T 2ghf_A           47 LNSSYVCVECNFLTKRYDALSEHNLK-YHPGEE--------NFKLTMVKR   87 (102)
T ss_dssp             CSCCEEETTTTEEESSTHHHHTHHHH-TSTTCC--------CEEEEECCC
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHHH-hcCCCC--------CeeCCcccC
Confidence            45899999999999999999999 77 999999        999998543

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=2.6e-08  Score=63.16  Aligned_cols=38  Identities=18%  Similarity=0.332  Sum_probs=34.9

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2eon_A            8 TGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGER--------PSGPSS   45 (46)
T ss_dssp             SSCCSCBCSSSCCBCSSHHHHHHHTT-TTTSCC--------SCTTSC
T ss_pred             CCCcccCCCCCCcccCcHHHHHHHHH-hcCCCC--------CCCCCC
Confidence            36699999999999999999999998 999999        999974

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.65  E-value=3.4e-08  Score=69.72  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=32.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC  262 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C  262 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||+|
T Consensus        43 ~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~--------p~~C   77 (77)
T 2cot_A           43 GEKPYKCDECGKAFIQRSHLIGHHR-VHTGSG--------PSSG   77 (77)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHGG-GSCCCC--------CCCC
T ss_pred             CCcCeeCCCCCCccCCHHHHHHHHH-HhCCCC--------CCCC
Confidence            3489999999999999999999998 999999        9987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=3.1e-08  Score=62.72  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2em4_A            8 TGQRPYECIECGKAFKTKSSLICHRR-SHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCSSSEECSSSCCEESSHHHHHHHHH-HHSSSS--------CCCCCC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCC--------CCCCCC
Confidence            36699999999999999999999998 999999        999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=3e-08  Score=63.19  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             CCCCccccC--ccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccccc
Q 023000          218 GTGGTELCP--QCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKC  265 (289)
Q Consensus       218 ~~~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C  265 (289)
                      .+++||.|.  .|++.|.....|.+|++ +|++++        ||+|++|
T Consensus         8 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~C   48 (48)
T 2ent_A            8 TGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVK--------PSGPSSG   48 (48)
T ss_dssp             CCCCCEECCSSSCCCEESSHHHHHHHHT-TSCCCC--------SCSSCCC
T ss_pred             CCCCCeECCCCCCCCccCCHHHHHHHHH-HhCCCC--------CCCCCCC
Confidence            467999998  89999999999999999 999999        9999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=4.2e-08  Score=62.13  Aligned_cols=38  Identities=18%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2en9_A            8 AGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CSSCCCBCTTTCCBCSSHHHHHHHHH-HHTSSC--------CCSCCC
T ss_pred             CCCCCEECCccCcccCCHHHHHHHHH-HcCCCC--------CCCCCC
Confidence            36699999999999999999999998 999999        999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.63  E-value=2.5e-08  Score=63.17  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=34.7

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2emj_A            8 TGEKPFECAECGKSFSISSQLATHQR-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHH-HHTTSC--------SSSSCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            35699999999999999999999998 999999        999974

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.63  E-value=5.3e-09  Score=71.25  Aligned_cols=47  Identities=15%  Similarity=0.331  Sum_probs=41.6

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHH
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALV  276 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~  276 (289)
                      .+++||.|++||+.|.....|.   + +|++++        ||.|++||+.|....++.
T Consensus        10 ~~~k~~~C~~C~k~F~~~~~l~---~-~H~~~k--------~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A           10 TNRASFKCPVCSSTFTDLEANQ---L-FDPMTG--------TFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHH---H-EETTTT--------EEBCSSSCCBCEECTTCS
T ss_pred             CCCCCccCCCCCchhccHHHhH---h-hcCCCC--------CEECCCCCCccccCcccc
Confidence            3669999999999999988886   6 999999        999999999999877654

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.8e-08  Score=62.87  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=34.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2enf_A            9 GEKPYKCNECGKVFTQNSHLVRHRG-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCSCBCSSSCCBCSSHHHHHHHHT-TTTTSS--------CCCCSC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHH-hhCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=2.9e-08  Score=61.18  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=32.9

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC  262 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C  262 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C   41 (41)
T 2ept_A            6 SGQRVYECQECGKSFRQKGSLTLHER-IHTGSG--------PSSG   41 (41)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHGG-GCCCCS--------CSCC
T ss_pred             CCCCCeECCCCCCCcCCHHHHHHHHH-HhCCCC--------CcCC
Confidence            36789999999999999999999998 999999        9987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=4.3e-08  Score=62.02  Aligned_cols=38  Identities=26%  Similarity=0.416  Sum_probs=34.7

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~   45 (46)
T 2emg_A            8 TGENPFICSECGKVFTHKTNLIIHQK-IHTGER--------PSGPSS   45 (46)
T ss_dssp             CSCCSCBCTTTCCBCSSHHHHHHHHT-TTSCCC--------CSCSCC
T ss_pred             CCCCCEECCccCcccCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            36689999999999999999999998 999999        999974

>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=2.4e-08  Score=67.91  Aligned_cols=43  Identities=33%  Similarity=0.855  Sum_probs=38.5

Q ss_pred             CcccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCC
Q 023000           95 VTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPG  139 (289)
Q Consensus        95 ~~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~  139 (289)
                      +.+.++|++.+|++..++  ||+|+.|+..||++||++.+|.|..
T Consensus         9 k~~~~~Cs~~~Ck~~~ll--~f~C~~C~~~FC~~HR~~e~H~C~~   51 (63)
T 1x4v_A            9 KIFTNKCERAGCRQREMM--KLTCERCSRNFCIKHRHPLDHDCSG   51 (63)
T ss_dssp             CTTCCCCCSTTCCCCCSS--CCBCSSSCCBCCHHHHSTTSSCCCS
T ss_pred             cccCCCCCccCCCCCCcc--ceECCCCCcccCcccCCccCCcCCC
Confidence            446789999999998654  9999999999999999999999984

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.4e-08  Score=63.24  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2ytp_A            8 TGERHYECSECGKAFARKSTLIMHQR-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHT-TTSCCC--------CCSSCC
T ss_pred             CCCCCeECCcCCcccCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            36699999999999999999999998 999999        999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=4.2e-08  Score=61.49  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=33.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||+|+
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~   44 (44)
T 2eou_A            8 AAKTTSECQECGKIFRHSSLLIEHQA-LHAGES--------GPSSG   44 (44)
T ss_dssp             SSSCCCCCTTTCCCCSSHHHHHHHHH-HHTTSC--------CCCCC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHH-HHCCCC--------CCCCC
Confidence            36689999999999999999999998 999999        99884

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=4.7e-08  Score=61.86  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=34.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|+.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2eoh_A            8 SGKKPYECKECRKTFIQIGHLNQHKR-VHTGER--------SSGPSS   45 (46)
T ss_dssp             CCSCSCCCSSSCCCCSSHHHHHHHHH-HCSSCC--------SCSTTC
T ss_pred             CCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            36699999999999999999999998 999999        999863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=3.6e-08  Score=62.45  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=34.1

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQR-VHTGEK--------PSGPSS   45 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGG-GGTTCC--------CSSCCC
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHH-hcCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=4.1e-08  Score=62.18  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=34.7

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|+.
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2enh_A            8 TGEKPYECDVCRKAFSHHASLTQHQR-VHSGEK--------PSGPSS   45 (46)
T ss_dssp             CCSSSCBCTTTCCBCSSSHHHHHHGG-GSCCSC--------CCCCCC
T ss_pred             CCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            36699999999999999999999998 999999        999963

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.61  E-value=3.1e-08  Score=61.33  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=32.6

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~   42 (42)
T 2el5_A            7 GENPYECSECGKAFNRKDQLISHQR-THAGES--------GPSSG   42 (42)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHG-GGCCCC--------SCCCC
T ss_pred             CCCCccCCCcChhhCCHHHHHHHHH-hcCCCC--------CCCCC
Confidence            5689999999999999999999998 999999        99884

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=3e-08  Score=62.73  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=34.1

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2yti_A            9 GEKPYKCNECGKVFTQNSHLARHRG-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHT-TTSCSC--------CSSTTC
T ss_pred             CCcCeECCCCCcccCChhHHHHHhH-hcCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.61  E-value=5.4e-08  Score=67.58  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             CCCCccccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++|||.|.+  |+++|.+.++|.+|++++|++++        ||.|..
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEK--------P~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDL--------PAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCC--------CCCCCS
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCC--------Cccccc
Confidence            4789999975  99999999999999844899999        888853

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=3.7e-08  Score=62.22  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=34.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|+.|++.|.....|..|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQLHVHQR-IHTGEN--------PSGPSS   45 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHHHHHHG-GGSSSC--------CCSSSC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=3e-08  Score=62.72  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=34.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~--------~~~C~~   45 (46)
T 2em3_A            9 GEKPYECKVCSKAFTQKAHLAQHQK-THTGEK--------PSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHH-HHCCCC--------CCCSCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.6e-08  Score=62.42  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=34.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2em6_A            9 GEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHT-TTSSSC--------CCCTTC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH-HcCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.7e-08  Score=61.81  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||+|++
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2emi_A            8 TGERHYECSECGKAFIQKSTLSMHQR-IHRGEK--------PSGPSS   45 (46)
T ss_dssp             SSCCCEECSSSCCEESSHHHHHHHHG-GGCSCC--------CCSCCC
T ss_pred             CCCCCCCCCCCCcccCCHHHHHHHHh-HhCCCC--------CCCCCC
Confidence            36689999999999999999999998 999999        999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.4e-08  Score=62.49  Aligned_cols=37  Identities=24%  Similarity=0.443  Sum_probs=34.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2eq2_A            9 GGKPYQCNECGKAFSQTSKLARHQR-VHTGEK--------PSGPSS   45 (46)
T ss_dssp             SSCSSSCCSSCCCCSSHHHHHHHGG-GGCCCC--------CCCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH-HcCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.1e-08  Score=62.62  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=34.7

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2ytf_A            8 TGEKPFECSECQKAFNTKSNLIVHQR-THTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHH-TSCSSS--------SSCCCC
T ss_pred             CCCCCcCCCCCCcccCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            36699999999999999999999998 999999        999974

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.60  E-value=3.5e-08  Score=70.78  Aligned_cols=40  Identities=15%  Similarity=0.282  Sum_probs=38.0

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCccc
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGF  269 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F  269 (289)
                      ++|.|.+|++.|.....|..|++ +|.+++        ++.|..|+..|
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~--------~~~~~~~~~~~   85 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHAD-NCAGPD--------GVEGENSGPSS   85 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH-HCCCCC--------SCCCCCCCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHH-HccCCC--------CcccCCCCCCC
Confidence            68999999999999999999999 999999        99999999876

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.1e-08  Score=62.61  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=34.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQA-THSGEK--------PSGPSS   45 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHH-HHCCCS--------CSCTTC
T ss_pred             CCCCeeccccCChhcCHHHHHHHHH-HcCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.3e-08  Score=62.47  Aligned_cols=37  Identities=22%  Similarity=0.351  Sum_probs=34.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------p~~C~~   45 (46)
T 2yts_A            9 GEKPYICNECGKSFIQKSHLNRHRR-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHGG-GTSSCC--------SSCCCC
T ss_pred             CCcCEECCCCChhhCChHHHHHHHH-hcCCCC--------CcCCCC
Confidence            5689999999999999999999998 999999        999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.3e-08  Score=60.61  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||+|.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~   42 (42)
T 2yte_A            7 GEKPYSCAECKETFSDNNRLVQHQK-MHTVKS--------GPSSG   42 (42)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHH-HTSCCS--------SCCCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-HhCCCC--------CCCCC
Confidence            5689999999999999999999988 899999        89874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=4e-08  Score=62.14  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=34.1

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHSNLTTHQV-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHHHHHHHHT-TTCCSC--------CSSCCC
T ss_pred             CCCCeECCcCChhhCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3.8e-08  Score=62.17  Aligned_cols=38  Identities=21%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|.+|++ +|++++        ||.|++
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2yrj_A            8 TGEKPYRCGECGKAFAQKANLTQHQR-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHT-TTSSCC--------SSCSCC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHH-HcCCCC--------CCCCCC
Confidence            35689999999999999999999998 999999        999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3e-08  Score=62.70  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=34.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------p~~C~~   45 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQR-IHTGEK--------PSGPSS   45 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHH-HHHSCC--------CSSSTT
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHH-hcCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999975

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=5.2e-08  Score=60.35  Aligned_cols=35  Identities=34%  Similarity=0.565  Sum_probs=30.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC  262 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C  262 (289)
                      +++||.|++|++.|...+.|.+|++ +|++++        ||+|
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C   42 (42)
T 2eos_A            8 GEKPYPCEICGTRFRHLQTLKSHLR-IHTGSG--------PSSG   42 (42)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHTT-TTSCCS--------STTC
T ss_pred             CCCCEECCCCCCccCCHHHHHHHHH-hcCCCC--------CCCC
Confidence            5689999999999999999999988 899888        8877

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.7e-08  Score=62.37  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCC-CCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDR-SGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~-~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|..|++ +|++ ++        ||.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~--------~~~C~~   46 (46)
T 2eoy_A            8 QKEKCFKCNKCEKTFSCSKYLTQHER-IHTRGVK--------SGPSSG   46 (46)
T ss_dssp             CCSCCEECSSSCCEESSSHHHHHHHT-TCCSCCT--------TSSSCC
T ss_pred             CCCCCEECcCCCCcCCCHHHHHHHHH-HcCCCCC--------CCCCCC
Confidence            36689999999999999999999998 9999 99        999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=5.1e-08  Score=60.90  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~   44 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQR-THTGES--------GPSSG   44 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHH-HTTTSS--------CSCCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHH-HhCCCC--------CCCCC
Confidence            5689999999999999999999988 899999        99884

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=6e-08  Score=60.64  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=32.6

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||+|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~   44 (44)
T 2eoj_A            8 TGENPYECCECGKVFSRKDQLVSHQK-THSGQS--------GPSSG   44 (44)
T ss_dssp             SSCCSCEETTTTEECSSHHHHHHHHT-TSSSSC--------SCCCC
T ss_pred             CCCcCeeCCCCCCccCCHHHHHHHHH-HcCCCC--------CCCCC
Confidence            35689999999999999999999988 899999        89884

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4.9e-08  Score=61.00  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~   44 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYLIIHTR-THTGES--------GPSSG   44 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHHHHHHT-TTCCSS--------SSCCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHhh-hcCCCC--------CCCCC
Confidence            5689999999999999999999988 899999        99884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.55  E-value=5.4e-08  Score=60.14  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC  262 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C  262 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|
T Consensus         8 ~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~k--------~~~C   42 (42)
T 2epc_A            8 GETPYLCGQCGKSFTQRGSLAVHQR-SCSQSG--------PSSG   42 (42)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHH-HTTCCC--------CCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHhh-hcCCCC--------CCCC
Confidence            5689999999999999999999988 899998        8887

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=5.6e-08  Score=60.84  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~   44 (44)
T 2emb_A            9 TRKRYECSKCQATFNLRKHLIQHQK-THAAKS--------GPSSG   44 (44)
T ss_dssp             CCSSEECTTTCCEESCHHHHHHHGG-GGCCCC--------CTTCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-HcCCCC--------CcCCC
Confidence            5689999999999999999999998 999999        99884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4.5e-08  Score=61.95  Aligned_cols=37  Identities=19%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~~   45 (46)
T 2eoz_A            9 GEKPYSCNVCGKAFVLSAHLNQHLR-VHTQET--------LSGPSS   45 (46)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHH-HHSSCC--------SSSCCC
T ss_pred             CCCCeECcccChhhCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999873

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=5.2e-08  Score=61.68  Aligned_cols=38  Identities=21%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2emz_A            8 SGERPFKCNECGKGFGRRSHLAGHLR-LHSREK--------SSGPSS   45 (46)
T ss_dssp             SCCCSCCCSSSCCCCSSHHHHHHHHH-HHHHTT--------CCCSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            36689999999999999999999998 999999        999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=5.7e-08  Score=61.48  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2yto_A            9 GEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGER--------HSGPSS   45 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHH-HHTCCC--------BTTTBC
T ss_pred             CCCCEECcccCCccCCHhHHHHHHH-HcCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999973

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=6.1e-08  Score=60.67  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=32.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C~   44 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHER-THARKS--------GPSSG   44 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHH-HCCCCC--------SSCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhH-hcCCCC--------CCCCC
Confidence            5689999999999999999999988 899998        88874

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=5.6e-08  Score=60.14  Aligned_cols=35  Identities=40%  Similarity=0.573  Sum_probs=30.3

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC  262 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C  262 (289)
                      +++||.|++|++.|.....|.+|++ +|++++        ||.|
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C   42 (42)
T 2en2_A            8 GEKPYKCETCGARFVQVAHLRAHVL-IHTGSG--------PSSG   42 (42)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHTH-HHHSCC--------SSCC
T ss_pred             CCCCEeCCCcChhhCCHHHHHHHHH-HcCCCC--------CCCC
Confidence            5688999999999999999999988 888888        8876

>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=98.53  E-value=4.2e-08  Score=71.11  Aligned_cols=45  Identities=29%  Similarity=0.795  Sum_probs=39.6

Q ss_pred             CcccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCC
Q 023000           95 VTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPK  141 (289)
Q Consensus        95 ~~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~  141 (289)
                      +.+.++|++.+|++..++  ||.|+.|+..||++||++.+|.|....
T Consensus        22 ~~~~~~C~~~~Ck~~~~l--~f~C~~C~~~FC~~HR~~e~H~C~~~~   66 (86)
T 1wfe_A           22 EHKSYSCSFKGCTDVELV--AVICPYCEKNFCLRHRHQSDHDCEKLE   66 (86)
T ss_dssp             CSCCEECCSTTCCCEESS--CEECTTTCCEECGGGCSTGGGTCSSSS
T ss_pred             CCCCCCCCCcCCCCCCcc--ceECCCCCcccccccCCccCCCCCCCc
Confidence            335789999999999664  999999999999999999999998643

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=5.1e-08  Score=60.25  Aligned_cols=35  Identities=34%  Similarity=0.563  Sum_probs=29.6

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC  262 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C  262 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~--------~~~C   42 (42)
T 2ytb_A            8 GEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSG--------PSSG   42 (42)
T ss_dssp             SCCSBCCTTTTCCBSSHHHHHTTGG-GTSCCS--------CCCC
T ss_pred             CCCCeeCCCccchhCCHHHHHHHHH-HhCCCC--------CCCC
Confidence            5688888888888888888888887 888888        8876

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=7.1e-08  Score=60.89  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~~   45 (46)
T 2eq3_A            9 GEKPYECNQCGKAFSVRSSLTTHQA-IHTGKK--------PSGPSS   45 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHT-TSCCCC--------CCCSCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHH-HhCCCC--------CCCCCC
Confidence            5689999999999999999999998 999999        999863

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.46  E-value=6e-08  Score=58.17  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      |++ +|++++        ||+|++|++.|.....|..|+++|++
T Consensus         2 H~~-~h~~~k--------~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STR-GSTGIK--------PFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSS-TTCCSS--------SBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCC-cCCCCC--------CccCCCCCcccCcHHHHHHHHHHhcc
Confidence            455 777777        88888888888888888888877754

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=6.6e-08  Score=61.11  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~--------~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLR-SHERTD--------PSGPS   44 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHH-HHHHSC--------CSSCS
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHH-HhCCCC--------CCCCC
Confidence            5689999999999999999999998 999999        99986

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=3e-09  Score=73.91  Aligned_cols=52  Identities=25%  Similarity=0.542  Sum_probs=46.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +++||.|++||+.|.....|..        ++        +|.|++|++.|.....|..|+++|++..
T Consensus        15 ~~~~~~C~~C~k~f~~~~~l~~--------~~--------~~~C~~C~~~f~~~~~l~~H~~~H~~~~   66 (73)
T 2ctu_A           15 GDRSQKCSKCGIIFIRRSTLSR--------RK--------TPMCEKCRKDSCQEAALNKDEGNESGKK   66 (73)
T ss_dssp             CCSEEECSSSCCEEECCCCCCC--------SS--------SCCCHHHHHTCSCCCSSCCCSSCCCCCC
T ss_pred             CCCCeeCCcccchhCCHHHhCc--------CC--------CCCCCCCChhhcCHHHHHHHHHhhcCCC
Confidence            5699999999999999887754        56        9999999999999999999999887654

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=7.1e-08  Score=60.36  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +++||.|++|++.|.....|..|++ +|++++        ||.|.
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~--------~~~C~   44 (44)
T 2eox_A            9 DSKSYNCNECGKAFTRIFHLTRHQK-IHTRKS--------GPSSG   44 (44)
T ss_dssp             CCCCEEETTTTEEESSSHHHHTTHH-HHCCCC--------CCSCC
T ss_pred             CCCCeECcccCcccCCHHHHHHHHH-HhCCCC--------CCCCC
Confidence            5689999999999999999999988 899988        88874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.44  E-value=1.5e-07  Score=57.26  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=31.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC  262 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C  262 (289)
                      +++||.|++||+.|...+.|..|++ +|++++        ||.+
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~~   37 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMN-VHRRDR--------ARLR   37 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHH-TTCCSC--------TTTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHH-HcCCCc--------ccee
Confidence            5689999999999999999999998 999999        8875

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=1.8e-07  Score=58.51  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=30.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccc
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVC  262 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C  262 (289)
                      .+++||.|++|++.|...+.|..|++ +|++++        ||.|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k--------~~~~   43 (44)
T 2epv_A            8 SGEKPYECNECGKAFIWKSLLIVHER-THAGVS--------GPSS   43 (44)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHG-GGSSCS--------CCCC
T ss_pred             CCCcCeECCCCCcccCchHHHHHHHh-HhcCCC--------CCCC
Confidence            35688999999999999999999988 888888        8876

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1e-07  Score=58.78  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=33.0

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         1 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   37 (42)
T 2yte_A            1 GSS-GSSGEK--------PYSCAECKETFSDNNRLVQHQKMHTVKS   37 (42)
T ss_dssp             CCS-SSCSCC--------SCBCTTTCCBCSSHHHHHHHHHHTSCCS
T ss_pred             CCc-CcCCCC--------CeECCCCCCccCCHHHHHHHHHHhCCCC
Confidence            456 889999        9999999999999999999999987654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=2.1e-07  Score=57.08  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=20.1

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhcCCC
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +++||.|++  |+++|...+.|.+|++ +|+++
T Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~r-~Htg~   37 (38)
T 2eln_A            6 SGILLKCPTDGCDYSTPDKYKLQAHLK-VHTAL   37 (38)
T ss_dssp             CCCCEECSSSSCCCEESCHHHHHHHHH-HHSCC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            556777764  7777777777777766 66654

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.40  E-value=9e-08  Score=59.15  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=33.5

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++...
T Consensus         1 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2el5_A            1 GSS-GSSGEN--------PYECSECGKAFNRKDQLISHQRTHAGESG   38 (42)
T ss_dssp             CCS-SSSSCC--------SEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred             CCC-CCCCCC--------CccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence            456 889999        99999999999999999999999887543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.40  E-value=1.7e-07  Score=68.26  Aligned_cols=32  Identities=28%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|++|+++|.....|.+|++++|++|.
T Consensus        53 ~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           53 AAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            45899999999999999999999876898775

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.38  E-value=2.5e-07  Score=54.27  Aligned_cols=29  Identities=31%  Similarity=0.647  Sum_probs=24.8

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|++||+.|...+.|..|++ +|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~   29 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHIT-LHELLG   29 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHH-HHTTTC
T ss_pred             CcccCCCCCchhCCHHHHHHHHH-HhCCCC
Confidence            47888888888888888888888 888888

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.37  E-value=1.1e-07  Score=60.14  Aligned_cols=38  Identities=16%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2emk_A            2 SSGS-SGTGEK--------PYECKECGKAFSQTTHLIQHQRVHTGEK   39 (46)
T ss_dssp             CCCC-CCSSSC--------SCBCSSSCCBCSCHHHHHHHHHHHSSCC
T ss_pred             CCCC-ccCCCC--------ceECCCCCchhCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.36  E-value=2.9e-07  Score=64.32  Aligned_cols=31  Identities=29%  Similarity=0.503  Sum_probs=29.1

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|.+|++.|.....|.+|++ +|++++
T Consensus        42 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   72 (74)
T 2lce_A           42 GEKPYRCNICGAQFNRPANLKTHTR-IHSGEK   72 (74)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHH-HHCCSC
T ss_pred             CCCCEECCCCCchhCCHHHHHHHHH-hcCCCC
Confidence            3489999999999999999999999 999999

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.3e-07  Score=59.67  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2eov_A            2 SSGS-SGTGEK--------PYKCSDCGKSFTWKSRLRIHQKCHTGER   39 (46)
T ss_dssp             CCCC-CCSSCC--------SCBCSSSCCBCSSHHHHHHHHHHHSCCS
T ss_pred             CCCC-CCCCCC--------CccCCccChhhCCHHHHHHHHHhcCCCC
Confidence            3667 899999        9999999999999999999999988754

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=1.6e-07  Score=59.37  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eoh_A            3 SGS-SGSGKK--------PYECKECRKTFIQIGHLNQHKRVHTGER   39 (46)
T ss_dssp             CCC-SCCCSC--------SCCCSSSCCCCSSHHHHHHHHHHCSSCC
T ss_pred             CCC-CcCCCC--------CcCCCCcCchhCCHHHHHHHHHHhCCCC
Confidence            566 899999        9999999999999999999999987654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1.3e-07  Score=59.16  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=33.0

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         1 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   37 (44)
T 2emx_A            1 GSS-GSSGEK--------PFGCSCCEKAFSSKSYLLVHQQTHAEEK   37 (44)
T ss_dssp             CCC-CCSSCC--------CEECSSSSCEESSHHHHHHHHHHHTSSC
T ss_pred             CCC-CcCCCc--------CccCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            456 889999        9999999999999999999999987654

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=1.1e-07  Score=58.75  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++...
T Consensus         2 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2ytb_A            2 SSG-SSGGEK--------PYRCDQCGKAFSQKGSLIVHIRVHTGSGP   39 (42)
T ss_dssp             CCC-CCCSCC--------SBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred             Ccc-ccCCCC--------CeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            566 899999        99999999999999999999999876543

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.35  E-value=1.1e-07  Score=60.10  Aligned_cols=38  Identities=16%  Similarity=0.160  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||+|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~~   39 (46)
T 2em0_A            2 SSGS-SGMGEK--------TWKCRECDMCFSQASSLRLHQNVHVGEK   39 (46)
T ss_dssp             CCCC-CSCCCC--------CCCCSSSCCCCSSHHHHHHHGGGGSSSS
T ss_pred             CCcC-ccCCCc--------CeECCCCCcccCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=1.1e-07  Score=60.01  Aligned_cols=38  Identities=13%  Similarity=0.242  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ytj_A            2 SSGS-SGTGEK--------PYICAECGKAFTIRSNLIKHQKIHTKQK   39 (46)
T ss_dssp             CSSC-TTSSCC--------SEECSSSCCEESSHHHHHHHHHHTSCCC
T ss_pred             Cccc-CCCCCc--------CeECCCCChhhCCHHHHHHHHHHcCCCC
Confidence            4677 899999        9999999999999999999999987654

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=9.4e-08  Score=59.76  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2yu5_A            2 SSGS-SGAGEN--------PFKCSKCDRVFTQRNYLVQHERTHARKS   39 (44)
T ss_dssp             CCSC-CCSCCC--------SEECSSSSCEESSSHHHHHHHHHCCCCC
T ss_pred             CCcc-ccCCCC--------CeECCCCCchhCCHHHHHHHhHhcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=9.2e-08  Score=60.49  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2eoz_A            2 SSGS-SGTGEK--------PYSCNVCGKAFVLSAHLNQHLRVHTQET   39 (46)
T ss_dssp             CSCC-CCSSCC--------SEEETTTTEEESSHHHHHHHHHHHSSCC
T ss_pred             Cccc-cCCCCC--------CeECcccChhhCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999988654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.8e-07  Score=56.02  Aligned_cols=26  Identities=23%  Similarity=0.643  Sum_probs=14.0

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||.|++|++.|....+|..|+++|++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            55555555555555555555555443

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1e-07  Score=60.23  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2eml_A            2 SSGS-SGTGEK--------PYECSVCGKAFSHRQSLSVHQRIHSGKK   39 (46)
T ss_dssp             CCCC-CCSSCC--------SEECSSSCCEESSHHHHHHHHGGGSSCC
T ss_pred             CccC-CcCCCC--------CeeCCCcCCccCCHHHHHHHHHHhcCCC
Confidence            3667 899999        9999999999999999999999987654

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.34  E-value=1.9e-07  Score=59.01  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ely_A            3 SGS-SGTGEK--------PFKCVECGKGFSRRSALNVHHKLHTGEK   39 (46)
T ss_dssp             CCC-CCCCCC--------SBCCSSSCCCBSSTTHHHHHHHHHSCCS
T ss_pred             CCC-CCCCCC--------CcccCccCcccCCHHHHHHHHHHcCCCC
Confidence            566 899999        9999999999999999999999987654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.4e-07  Score=59.03  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (44)
T 2epv_A            3 SGS-SGSGEK--------PYECNECGKAFIWKSLLIVHERTHAGVS   39 (44)
T ss_dssp             CCC-CCCCCC--------SEECSSSCCEESSHHHHHHHHGGGSSCS
T ss_pred             CCc-ccCCCc--------CeECCCCCcccCchHHHHHHHhHhcCCC
Confidence            666 899999        9999999999999999999999987654

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.3e-07  Score=58.43  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=33.0

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   38 (42)
T 2eos_A            2 SSG-SSGGEK--------PYPCEICGTRFRHLQTLKSHLRIHTGSG   38 (42)
T ss_dssp             CCS-CCSSSC--------CBCCSSSCCCBSSHHHHHHHTTTTSCCS
T ss_pred             CCc-ccCCCC--------CEECCCCCCccCCHHHHHHHHHhcCCCC
Confidence            456 888999        9999999999999999999999887654

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.5e-07  Score=59.40  Aligned_cols=38  Identities=16%  Similarity=0.222  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|..|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ep1_A            2 SSGS-SGTGEK--------PYECSDCGKSFIKKSQLHVHQRIHTGEN   39 (46)
T ss_dssp             CCCC-CCSSCC--------SSCCSSSCCCCSSHHHHHHHHGGGSSSC
T ss_pred             cccc-CCCCCC--------CcCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987654

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.5e-07  Score=58.69  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2en7_A            2 SSGS-SGTGMK--------PYVCNECGKAFRSKSYLIIHTRTHTGES   39 (44)
T ss_dssp             CSCC-CSSSSS--------SSCCTTTCCCCSSHHHHHHHHTTTCCSS
T ss_pred             CCCc-CCCCCc--------CeECCCCCCccCCHHHHHHHhhhcCCCC
Confidence            3667 899999        9999999999999999999999887654

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.1e-07  Score=59.34  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=33.5

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2eoj_A            3 SGS-SGTGEN--------PYECCECGKVFSRKDQLVSHQKTHSGQS   39 (44)
T ss_dssp             SCC-SSSSCC--------SCEETTTTEECSSHHHHHHHHTTSSSSC
T ss_pred             Ccc-ccCCCc--------CeeCCCCCCccCCHHHHHHHHHHcCCCC
Confidence            667 899999        9999999999999999999999887654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.7e-07  Score=59.09  Aligned_cols=38  Identities=16%  Similarity=0.315  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.+..+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2eq4_A            2 SSGS-SGTGEK--------LYNCKECGKSFSRAPCLLKHERLHSGEK   39 (46)
T ss_dssp             CCCC-CSSCCC--------CCCBTTTTBCCSCHHHHHHHHHHCCSSS
T ss_pred             CCcc-cCCCCC--------CeECCCCCCccCchHHHHHHHHhcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.2e-07  Score=58.63  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=33.7

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++...
T Consensus         2 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2en2_A            2 SSG-SSGGEK--------PYKCETCGARFVQVAHLRAHVLIHTGSGP   39 (42)
T ss_dssp             CCC-CCCSSC--------SEECTTTCCEESSHHHHHHHTHHHHSCCS
T ss_pred             CCc-ccCCCC--------CEeCCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            556 889999        99999999999999999999999887643

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.9e-07  Score=58.95  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2ytn_A            2 SSGS-SGTGKK--------PYKCNECGKVFTQNSHLARHRGIHTGEK   39 (46)
T ss_dssp             CCCC-CCSCCS--------SCBCTTTCCBCSSHHHHHHHGGGTSCCC
T ss_pred             CCCc-CCCCCc--------CeECCCCCCeeCCHHHHHHHhhhcCCCC
Confidence            3666 899999        9999999999999999999999987654

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.4e-07  Score=59.61  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2yth_A            2 SSGS-SGSGEK--------PFQCEECGKRFTQNSHLHSHQRVHTGEK   39 (46)
T ss_dssp             CCCS-CCCCSS--------SBCCSSSCCCBSSHHHHHHHGGGGTTCC
T ss_pred             Cccc-CCCCCc--------CCCCCCCCcccCCHHHHHHHHHhcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=2e-07  Score=58.78  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eq2_A            2 SSGS-SGTGGK--------PYQCNECGKAFSQTSKLARHQRVHTGEK   39 (46)
T ss_dssp             CCCC-SSSSSC--------SSSCCSSCCCCSSHHHHHHHGGGGCCCC
T ss_pred             Cccc-ccCCCC--------CeECCCCCcccCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.2e-07  Score=59.76  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eop_A            2 SSGS-SGTGEK--------PHECRECGKSFSFNSQLIVHQRIHTGEN   39 (46)
T ss_dssp             CCCC-SCCCCC--------SCBCTTTCCBCSSHHHHHHHHTTTTTSC
T ss_pred             CCcc-ccCCCC--------CeeCCCCCchhCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.2e-07  Score=59.95  Aligned_cols=38  Identities=16%  Similarity=0.247  Sum_probs=34.0

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2yto_A            2 SSGS-SGTGEK--------PYKCSDCGKAFTRKSGLHIHQQSHTGER   39 (46)
T ss_dssp             CCCC-CCCSCC--------CEECSSSCCEESSHHHHHHHHHHHTCCC
T ss_pred             Cccc-ccCCCC--------CEECcccCCccCCHhHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.7e-07  Score=59.20  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=33.5

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         3 H~~-~H~~~~--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2emi_A            3 SGS-SGTGER--------HYECSECGKAFIQKSTLSMHQRIHRGEK   39 (46)
T ss_dssp             CCC-SCSSCC--------CEECSSSCCEESSHHHHHHHHGGGCSCC
T ss_pred             CCc-ccCCCC--------CCCCCCCCcccCCHHHHHHHHhHhCCCC
Confidence            667 899999        9999999999999999999999987654

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.7e-07  Score=59.11  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=33.7

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2enf_A            2 SSGS-SGTGEK--------PYKCNECGKVFTQNSHLVRHRGIHTGEK   39 (46)
T ss_dssp             CCCC-CCCCCC--------SCBCSSSCCBCSSHHHHHHHHTTTTTSS
T ss_pred             CCCc-CCCCCc--------CeECCCCCcccCCHHHHHHHHHhhCCCC
Confidence            3666 899999        9999999999999999999999887654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=2.2e-07  Score=58.66  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eoq_A            2 SSGS-SGTGEK--------PFKCDICGKSFCGRSRLNRHSMVHTAEK   39 (46)
T ss_dssp             CCCC-CSSSSC--------SCCCSSSCCCCSSHHHHHHHHHHTTCCC
T ss_pred             CCCC-CCCCCC--------CcCCCcCCchhCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=2.3e-07  Score=58.60  Aligned_cols=38  Identities=16%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      |++ +|++++        ||.|++|++.|.+..+|..|+++|++...
T Consensus         3 h~~-~h~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2elz_A            3 SGS-SGSVEK--------PYKCEDCGKGYNRRLNLDMHQRVHMGEKT   40 (46)
T ss_dssp             CCS-CCCCCS--------SCBCSSSCCBCSSHHHHHHHGGGGGSCCC
T ss_pred             CCC-CCCCCC--------CeeCcccCchhCCHHHHHHHHHhcCCCCC
Confidence            566 889999        99999999999999999999999886543

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.32  E-value=1.3e-07  Score=59.76  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=34.5

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++...
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ema_A            2 SSGS-SGTGEK--------RYKCNECGKVFSRNSQLSQHQKIHTGEKP   40 (46)
T ss_dssp             CSCS-SCTTSC--------CEECSSSCCEESSHHHHHHHHTGGGCCCC
T ss_pred             CCcc-CCCCCc--------CcCCCCCcchhCCHHHHHHHHHhcCCCCC
Confidence            3667 899999        99999999999999999999999887543

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.1e-07  Score=60.06  Aligned_cols=38  Identities=18%  Similarity=0.359  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2emh_A            2 SSGS-SGTGER--------PYICTVCGKAFTDRSNLIKHQKIHTGEK   39 (46)
T ss_dssp             CCCC-SCSCCC--------SEECTTTCCEESSHHHHHHHHHHHHCSS
T ss_pred             CCCC-CCCCCC--------CcCCCCCCchhCCHHHHHHHHHhcCCCC
Confidence            3667 899999        9999999999999999999999988754

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.8e-07  Score=59.04  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~F~~~~~L~~H~~~H~~~~   39 (46)
T 2em3_A            2 SSGS-SGTGEK--------PYECKVCSKAFTQKAHLAQHQKTHTGEK   39 (46)
T ss_dssp             CCCC-CCSSCC--------SEECSSSCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCC-CCCCCc--------CeECCCCCcccCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987654

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.2e-07  Score=59.79  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=34.2

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2emp_A            2 SSGS-SGTGVK--------PYMCNECGKAFSVYSSLTTHQVIHTGEK   39 (46)
T ss_dssp             CCCS-CSSCCC--------SEECSSSCCEESCHHHHHHHHHHHHCCS
T ss_pred             Cccc-ccCCCc--------CeECCCCCchhCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999988754

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.9e-07  Score=58.89  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+..+|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2epz_A            3 SGS-SGTGEK--------PFDCIDCGKAFSDHIGLNQHRRIHTGEK   39 (46)
T ss_dssp             CCS-SCCCCC--------SBCCTTTCCCBSSHHHHHHHHTTTTTCC
T ss_pred             CCC-CcCCCC--------CeECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            566 899999        9999999999999999999999887654

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.5e-07  Score=59.49  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=34.2

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.+...|..|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2eoo_A            2 SSGS-SGSGER--------PYGCNECGKNFGRHSHLIEHLKRHFREK   39 (46)
T ss_dssp             CCCC-CCSCCC--------CEECSSSCCEESSHHHHHHHHHHHHSTT
T ss_pred             CCCC-CCCCCC--------CEEccccCcccCCHHHHHHHHHHHcCCC
Confidence            4667 899999        9999999999999999999999988654

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.32  E-value=1.6e-07  Score=59.28  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2emj_A            2 SSGS-SGTGEK--------PFECAECGKSFSISSQLATHQRIHTGEK   39 (46)
T ss_dssp             CCCC-CCCCCC--------SEECSSSSCEESSHHHHHHHHHHHTTSC
T ss_pred             CCCC-CCCCCC--------CEECCCCCcccCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987654

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.5e-07  Score=59.45  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+..+|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2emf_A            3 SGS-SGTGGK--------HFECTECGKAFTRKSTLSMHQKIHTGEK   39 (46)
T ss_dssp             CCS-SSSSSC--------CEECSSSCCEESCHHHHHHHGGGTSCSS
T ss_pred             ccc-ccCCCC--------CeECCCCCchhCCHHHHHHHHHHhCCCC
Confidence            667 899999        9999999999999999999999987654

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=1.7e-07  Score=59.26  Aligned_cols=37  Identities=16%  Similarity=0.247  Sum_probs=33.5

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||+|++|++.|.....|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2em4_A            3 SGS-SGTGQR--------PYECIECGKAFKTKSSLICHRRSHTGEK   39 (46)
T ss_dssp             SCC-CCCCSS--------SEECSSSCCEESSHHHHHHHHHHHSSSS
T ss_pred             Ccc-ccCCCc--------CcCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            666 899999        9999999999999999999999987654

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=2e-07  Score=58.73  Aligned_cols=38  Identities=16%  Similarity=0.273  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2ytr_A            2 SSGS-SGTGEK--------PYKCNECGKAFSQTSKLARHQRIHTGEK   39 (46)
T ss_dssp             CSSC-CCSSCC--------TTCCTTTCCCCSSHHHHHHHHTTTTTCS
T ss_pred             CCCc-CCCCCc--------CcCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.31  E-value=1.9e-07  Score=57.53  Aligned_cols=38  Identities=13%  Similarity=0.205  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      |++ +|++++        ||.|++|++.|....+|..|+++|++...
T Consensus         2 H~~-~H~~~~--------~~~C~~C~k~f~~~~~l~~H~~~H~~~k~   39 (42)
T 2epc_A            2 SSG-SSGGET--------PYLCGQCGKSFTQRGSLAVHQRSCSQSGP   39 (42)
T ss_dssp             CCS-CCCSSC--------CEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred             CCc-cCCCCC--------CeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence            455 788888        99999999999999999999999876543

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.31  E-value=3.2e-07  Score=54.12  Aligned_cols=31  Identities=16%  Similarity=0.361  Sum_probs=16.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|.+|++.|.....|.+|++ +|++++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~   34 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLK-VHTDTL   34 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG-GGTSCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            3455555555555555555555555 555544

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=1.7e-07  Score=58.40  Aligned_cols=38  Identities=16%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|..|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2eof_A            2 SSGS-SGTGEK--------PYECNECQKAFNTKSNLMVHQRTHTGES   39 (44)
T ss_dssp             CCSS-CCSCCC--------SEECTTTCCEESCHHHHHHHHHHTTTSS
T ss_pred             CCcc-CCCCCC--------CeECCCCCcccCCHhHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987654

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=1.8e-07  Score=59.00  Aligned_cols=37  Identities=16%  Similarity=0.211  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2yti_A            3 SGS-SGTGEK--------PYKCNECGKVFTQNSHLARHRGIHTGEK   39 (46)
T ss_dssp             CCC-CCSCCC--------TTCCSSSCCCCSSHHHHHHHHTTTSCSC
T ss_pred             CCc-CCCCCc--------CeECCCCCcccCChhHHHHHhHhcCCCC
Confidence            666 899999        9999999999999999999999987654

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=1.1e-07  Score=59.98  Aligned_cols=38  Identities=18%  Similarity=0.303  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2ep3_A            2 SSGS-SGTGEK--------PYRCAECGKAFTDRSNLFTHQKIHTGEK   39 (46)
T ss_dssp             CCCS-SSSCCC--------SEECSSSCCEESSHHHHHHHHTTTTTSC
T ss_pred             CCCC-CCCCCC--------CeECCCCCchhCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999887654

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=2.1e-07  Score=58.74  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2emg_A            3 SGS-SGTGEN--------PFICSECGKVFTHKTNLIIHQKIHTGER   39 (46)
T ss_dssp             CCC-CCCSCC--------SCBCTTTCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCC-CCCCCC--------CEECCccCcccCCHHHHHHHHHHhCCCC
Confidence            666 899999        9999999999999999999999987654

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=2e-07  Score=58.80  Aligned_cols=38  Identities=16%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2emm_A            2 SSGS-SGTGER--------PHKCNECGKSFIQSAHLIQHQRIHTGEK   39 (46)
T ss_dssp             CCCS-CSSCCC--------SEECSSSCCEESSHHHHHHHHHHHSCCC
T ss_pred             CCcC-CcCCCC--------CeeCCCCChhhCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=2.7e-07  Score=58.33  Aligned_cols=37  Identities=16%  Similarity=0.243  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         3 h~~-~h~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2ytm_A            3 SGS-SGTGEK--------PYKCMECGKAFGDNSSCTQHQRLHTGQR   39 (46)
T ss_dssp             SCC-CCSSCC--------SSSBTTTTBCCSSHHHHHHHHHHHHSCC
T ss_pred             CCc-CCCCCC--------CcCCCCCCchhCCHHHHHHHHHHcCCCC
Confidence            556 889999        9999999999999999999999988754

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=2.1e-06  Score=62.60  Aligned_cols=33  Identities=24%  Similarity=0.487  Sum_probs=31.4

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      +|.|++|++.|.....|.+|++ +|++++        ||.|+
T Consensus        62 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~k--------~~~C~   94 (95)
T 2ej4_A           62 WEECPREGKSFKAKYKLVNHIR-VHTGEK--------SGPSS   94 (95)
T ss_dssp             CTTCSSTTCCCSSHHHHHHHHH-HHHTCC--------CCSSC
T ss_pred             ccCCCCCCcccCCHHHHHHHHH-hcCCCC--------CCCCC
Confidence            4999999999999999999999 999999        99996

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=2.2e-07  Score=58.72  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+..+|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ytq_A            3 SGS-SGAGEK--------PYGCSECGKAFSSKSYLIIHMRTHSGEK   39 (46)
T ss_dssp             CSS-CSSCCC--------SCBCSSSCCBCSCHHHHHHHHTTTCCSC
T ss_pred             CCc-CcCCCC--------CcCCCccChhhCChHHHHHHHHHhCCCC
Confidence            566 899999        9999999999999999999999987654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.30  E-value=3.5e-07  Score=53.83  Aligned_cols=31  Identities=19%  Similarity=0.338  Sum_probs=16.8

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|++|++.|.....|..|++ +|++++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~k   34 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIR-EVHGAA   34 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-HTSCTT
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHH-HHcCCC
Confidence            3455555555555555555555555 555544

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.30  E-value=1.1e-07  Score=59.92  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2el4_A            2 SSGS-SGTGVK--------PYGCSQCAKTFSLKSQLIVHQRSHTGVK   39 (46)
T ss_dssp             CCCC-CSCCCC--------SEECSSSSCEESSHHHHHHHGGGSSSCC
T ss_pred             cccc-CCCCCC--------ceECCCCCchhCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987654

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=2.1e-07  Score=58.69  Aligned_cols=39  Identities=15%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++...
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2eoe_A            2 SSGS-SGTGEK--------PYKCNECGKVFTQNSHLANHQRIHTGVKP   40 (46)
T ss_dssp             CCSS-CCCCCC--------SSEETTTTEECSSHHHHHHHHGGGSCCCS
T ss_pred             CCCC-CCCCCC--------CeECCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            3667 899999        99999999999999999999999887543

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=1.8e-07  Score=59.02  Aligned_cols=38  Identities=16%  Similarity=0.306  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.+...|..|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2emy_A            2 SSGS-SGTGEN--------PYECHECGKAFSRKYQLISHQRTHAGEK   39 (46)
T ss_dssp             CCCC-CCCSSC--------CEECSSSCCEESSHHHHHHHHHHHTTSC
T ss_pred             CCCC-CCCCCc--------CcCCCCCCcccCcHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=2.2e-07  Score=58.74  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         3 h~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eon_A            3 SGS-SGTGEK--------PYKCQVCGKAFRVSSHLVQHHSVHSGER   39 (46)
T ss_dssp             CSS-SCSSCC--------SCBCSSSCCBCSSHHHHHHHTTTTTSCC
T ss_pred             CCC-CCCCCc--------ccCCCCCCcccCcHHHHHHHHHhcCCCC
Confidence            556 889999        9999999999999999999999887654

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=2e-07  Score=58.74  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eow_A            2 SSGS-SGTGEK--------PYKCNECGKAFRARSSLAIHQATHSGEK   39 (46)
T ss_dssp             CCCC-CSCCCC--------CEECTTSCCEESSHHHHHHHHHHHCCCS
T ss_pred             CccC-CCCCCC--------CeeccccCChhcCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=2e-07  Score=58.78  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eq1_A            2 SSGS-SGTGEK--------PYKCNECGKAFRAHSNLTTHQVIHTGEK   39 (46)
T ss_dssp             CCCC-CCCCSC--------CCCCTTTTCCCSSHHHHHHHHTTTCCSC
T ss_pred             Cccc-ccCCCC--------CeECCcCChhhCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999887654

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=2.2e-07  Score=58.57  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=34.0

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2eme_A            2 SSGS-SGSGEK--------PYVCDYCGKAFGLSAELVRHQRIHTGEK   39 (46)
T ss_dssp             CCCC-TTCCCC--------SEECSSSCCEESSHHHHHHHHGGGCCCS
T ss_pred             CCCC-CCCCCC--------CeECCCCChhhCCHHHHHHHHHhcCCCC
Confidence            3667 899999        9999999999999999999999887654

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=2.9e-07  Score=58.09  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         3 h~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2en9_A            3 SGS-SGAGKK--------LFKCNECKKTFTQSSSLTVHQRIHTGEK   39 (46)
T ss_dssp             CCS-SCCSSC--------CCBCTTTCCBCSSHHHHHHHHHHHTSSC
T ss_pred             CCC-CCCCCC--------CEECCccCcccCCHHHHHHHHHHcCCCC
Confidence            566 899999        9999999999999999999999987654

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=1.9e-07  Score=58.98  Aligned_cols=37  Identities=16%  Similarity=0.288  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||+|++|++.|.....|..|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2ytp_A            3 SGS-SGTGER--------HYECSECGKAFARKSTLIMHQRIHTGEK   39 (46)
T ss_dssp             CCC-SSCCCC--------CEECSSSCCEESSHHHHHHHHTTTSCCC
T ss_pred             ccc-CcCCCC--------CeECCcCCcccCCHHHHHHHHHHhCCCC
Confidence            666 899999        9999999999999999999999987654

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=1.9e-07  Score=58.96  Aligned_cols=37  Identities=16%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ene_A            3 SGS-SGTGEK--------PYKCNECGKVFRHNSYLSRHQRIHTGEK   39 (46)
T ss_dssp             CCS-SCCCSS--------SEECSSSCCEESSHHHHHHHHTTTCCCC
T ss_pred             ccc-CCCCCC--------CeECCCCCchhCChHHHHHHHhhcCCCC
Confidence            667 899999        9999999999999999999999987654

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=2.1e-07  Score=58.72  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2em7_A            3 SGS-SGTGEK--------PYKCEECGKGFICRRDLYTHHMVHTGEK   39 (46)
T ss_dssp             CCC-SSSCCC--------SEECSSSCCEESCHHHHHHHGGGGTTCC
T ss_pred             CCC-CCCCCc--------CccCCCccchhCCHHHHHHHHHHhCCCC
Confidence            566 899999        9999999999999999999999987654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=2e-07  Score=58.77  Aligned_cols=38  Identities=16%  Similarity=0.269  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2yts_A            2 SSGS-SGTGEK--------PYICNECGKSFIQKSHLNRHRRIHTGEK   39 (46)
T ss_dssp             CCSC-CCCSCC--------SEECSSSCCEESSHHHHHHHGGGTSSCC
T ss_pred             CCCC-CCCCCc--------CEECCCCChhhCChHHHHHHHHhcCCCC
Confidence            3667 899999        9999999999999999999999887654

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=2.3e-07  Score=58.49  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=34.0

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ep2_A            2 SSGS-SGTGEK--------PYECSICGKSFTKKSQLHVHQQIHTGEK   39 (46)
T ss_dssp             CSSS-CSSCCC--------SEECSSSCCEESSHHHHHHHHHTTSSCC
T ss_pred             CCCC-CCCCCc--------CcCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=6.4e-07  Score=53.19  Aligned_cols=30  Identities=27%  Similarity=0.496  Sum_probs=19.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +++||.|++|++.|.....|..|++ +|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLR-IHTNE   35 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHH-HHCCC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHH-HhCCC
Confidence            4466666666666666666666666 66654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=6.8e-07  Score=52.96  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=15.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +++||.|++|++.|.....|..|++ +|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLR-KHTGE   35 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHH-HHTCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHH-HccCC
Confidence            3455555555555555555555555 55543

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=2.6e-07  Score=58.35  Aligned_cols=37  Identities=16%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2em6_A            3 SGS-SGMGEK--------CYKCDVCGKEFSQSSHLQTHQRVHTGEK   39 (46)
T ss_dssp             CCS-CCCCCC--------CCBCSSSCCBCSSHHHHHHHHTTTSSSC
T ss_pred             Ccc-ccCCCC--------CeECCCCCcccCCHHHHHHHHHHcCCCC
Confidence            666 899999        9999999999999999999999887654

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=2e-07  Score=58.78  Aligned_cols=38  Identities=16%  Similarity=0.281  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2epw_A            2 SSGS-SGTGEK--------PCKCTECGKAFCWKSQLIMHQRTHVDDK   39 (46)
T ss_dssp             CCCC-CCCCCC--------SEECSSSCCEESSSHHHHHHHHHCCSCC
T ss_pred             cCcc-cCCCCC--------CeeCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987654

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.28  E-value=2.4e-07  Score=58.41  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2em9_A            3 SGS-SGTGEK--------PYNCKECGKSFRWASCLLKHQRVHSGEK   39 (46)
T ss_dssp             SCC-SCCCCC--------SEECSSSCCEESSHHHHHHHGGGGTSCC
T ss_pred             CCC-CCCCCc--------CeECCccccccCChHHHHHHHHHhCCCC
Confidence            667 899999        9999999999999999999999987654

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=2.3e-07  Score=58.53  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2ytk_A            2 SSGS-SGSGEK--------PYKCNECGKVFTQNSHLTNHWRIHTGEK   39 (46)
T ss_dssp             CCCC-CSSSSC--------SEECSSSCCEESSHHHHHHHHHHHSSSS
T ss_pred             CCcc-cCCCCC--------CEeCCcCCCccCCHHHHHHHHHHHCCCC
Confidence            3667 899999        9999999999999999999999987654

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=1.7e-07  Score=59.09  Aligned_cols=39  Identities=18%  Similarity=0.282  Sum_probs=34.4

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++...
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2yu8_A            2 SSGS-SGTGEK--------PYKCNECGKVFTQNSHLARHRRVHTGGKP   40 (46)
T ss_dssp             CCCC-CCCCCS--------SEECSSSCCEESSSHHHHHHTHHHHSCCC
T ss_pred             CcCc-CCCCCC--------CeECCcCCchhCCHHHHHHHHHhcCCCCC
Confidence            3666 899999        99999999999999999999999987643

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.4e-07  Score=58.37  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=33.6

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         3 H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eor_A            3 SGS-SGTGEK--------PYNCEECGKAFIHDSQLQEHQRIHTGEK   39 (46)
T ss_dssp             SSS-SSSCCC--------SEECTTTCCEESSHHHHHHHHHHHHSCC
T ss_pred             CCc-CcCCCc--------CccCCCCCCCcCCHHHHHHHHHhcCCCC
Confidence            667 899999        9999999999999999999999998654

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.6e-07  Score=58.34  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=32.7

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         3 h~~-~h~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2enh_A            3 SGS-SGTGEK--------PYECDVCRKAFSHHASLTQHQRVHSGEK   39 (46)
T ss_dssp             CCC-CCCCSS--------SCBCTTTCCBCSSSHHHHHHGGGSCCSC
T ss_pred             CCC-CcCCCC--------CcCCCCcCchhCCHHHHHHHHHHhCCCC
Confidence            455 788888        9999999999999999999999987654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.27  E-value=6.7e-07  Score=52.54  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=29.5

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +|++++        ||.|++|++.|....+|..|+++|++.
T Consensus         1 ~h~~~k--------~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            1 GSSGSS--------GYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCC--------SEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCC--------CeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            366777        999999999999999999999998765

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.3e-07  Score=58.59  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+..+|..|+++|++..
T Consensus         3 h~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2emz_A            3 SGS-SGSGER--------PFKCNECGKGFGRRSHLAGHLRLHSREK   39 (46)
T ss_dssp             CCS-CSSCCC--------SCCCSSSCCCCSSHHHHHHHHHHHHHTT
T ss_pred             CCc-CCCCCC--------CeECCCCCcccCCHHHHHHHHHHhCCCC
Confidence            666 899999        9999999999999999999999987654

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.4e-07  Score=58.47  Aligned_cols=38  Identities=16%  Similarity=0.224  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2en1_A            2 SSGS-SGSGEK--------PFKCEECGKRFTQNSQLHSHQRVHTGEK   39 (46)
T ss_dssp             CSTT-CCCCCC--------SEEETTTTEEESSHHHHHHHGGGGSCCC
T ss_pred             Cccc-CCCCCC--------CeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            4677 899999        9999999999999999999999987654

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=3.5e-07  Score=57.10  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         3 h~~-~h~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (44)
T 2eou_A            3 SGS-SGAAKT--------TSECQECGKIFRHSSLLIEHQALHAGES   39 (44)
T ss_dssp             CSC-SCSSSC--------CCCCTTTCCCCSSHHHHHHHHHHHTTSC
T ss_pred             CCC-CCCCCc--------CeECCCCCcccCCHHHHHHHHHHHCCCC
Confidence            456 888888        9999999999999999999999987654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.6e-07  Score=58.36  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2em2_A            3 SGS-SGSGEK--------PFKCKECGKAFRQNIHLASHLRIHTGEK   39 (46)
T ss_dssp             CCC-SCCCCC--------SEECSSSCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCC-CCCCCC--------CEECCcCCchhCCHHHHHHHHHHhCCCC
Confidence            566 899999        9999999999999999999999987654

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.5e-07  Score=58.33  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=33.5

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2ytd_A            3 SGS-SGSGEK--------PYKCSECGKAFHRHTHLNEHRRIHTGYR   39 (46)
T ss_dssp             CCC-CSCCCC--------SEECSSSCCEESSHHHHHHHHHHHTCCC
T ss_pred             Ccc-ccCCCc--------CeECCCCCCeeCChHHHHHHHHHcCCCC
Confidence            666 899999        9999999999999999999999988654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=8.1e-07  Score=52.74  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=16.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +++||.|++|++.|.....|..|++ +|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMN-RHSTE   35 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHH-HSSTT
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHH-HhccC
Confidence            4455555555555555555555555 55543

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=1.4e-07  Score=59.55  Aligned_cols=38  Identities=18%  Similarity=0.317  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2em5_A            2 SSGS-SGSSTK--------SHQCHECGRGFTLKSHLNQHQRIHTGEK   39 (46)
T ss_dssp             CCCC-CCCCSC--------SEECSSSCCEESSHHHHHHHHTTTSCSC
T ss_pred             CCcC-CCCCCC--------CeECCcCCCccCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999887654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.27  E-value=7.8e-07  Score=52.38  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=29.9

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         1 ~H~~~k--------~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            1 GSSGKR--------PFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CCSCCS--------CEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCCc--------CeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            367777        9999999999999999999999987653

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=1.5e-07  Score=59.36  Aligned_cols=38  Identities=21%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2en8_A            2 SSGS-SGSGEK--------SHTCDECGKNFCYISALRIHQRVHMGEK   39 (46)
T ss_dssp             CCCC-CCCCCS--------SEECTTTCCEESSHHHHHHHHTTTCCSC
T ss_pred             Cccc-cCCCCC--------CeECCCcCcccCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999887654

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=2.4e-07  Score=57.85  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=33.7

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      .|++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2emb_A            2 SSGS-SGHTRK--------RYECSKCQATFNLRKHLIQHQKTHAAKS   39 (44)
T ss_dssp             CCCS-CCCCCS--------SEECTTTCCEESCHHHHHHHGGGGCCCC
T ss_pred             Cccc-ccCCCC--------CeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999887654

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=2.1e-07  Score=58.64  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+..+|..|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ytf_A            3 SGS-SGTGEK--------PFECSECQKAFNTKSNLIVHQRTHTGEK   39 (46)
T ss_dssp             CCC-SSCCCC--------SEECSSSCCEESSHHHHHHHHHTSCSSS
T ss_pred             CCC-CCCCCC--------CcCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            666 899999        9999999999999999999999987654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=9.7e-07  Score=52.24  Aligned_cols=30  Identities=40%  Similarity=0.727  Sum_probs=16.6

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +++||.|++|++.|.....|.+|++ +|+++
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~e   35 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKL-LHTAD   35 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHH-HHSSC
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHH-HhcCC
Confidence            3455555555555555555555555 55544

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=2.3e-07  Score=58.50  Aligned_cols=38  Identities=16%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2yrj_A            2 SSGS-SGTGEK--------PYRCGECGKAFAQKANLTQHQRIHTGEK   39 (46)
T ss_dssp             CCCC-CCCCCC--------CEECSSSCCEESSHHHHHHHHTTTSSCC
T ss_pred             CCcc-CCCCCC--------CeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            3667 899999        9999999999999999999999987654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=2.8e-07  Score=58.15  Aligned_cols=37  Identities=24%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         3 H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2yso_A            3 SGS-SGSREK--------SHQCRECGEIFFQYVSLIEHQVLHMGQK   39 (46)
T ss_dssp             CSC-CSSCCC--------CEECTTTCCEESSHHHHHHHHHHHSCCS
T ss_pred             ccc-ccCCCC--------CEEccccChhhCCHHHHHHHHHHhCCCC
Confidence            566 899999        9999999999999999999999987654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=4.5e-07  Score=55.54  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=28.5

Q ss_pred             hcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHHHhhcCC
Q 023000          245 IHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      .+++++        ||+|++  |++.|.++++|.+|+++|++.
T Consensus         3 ~~~gek--------p~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGI--------LLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCC--------CEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCC--------CCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            355667        999986  999999999999999998763

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=2.3e-07  Score=58.49  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2eq0_A            3 SGS-SGTGEK--------PYKCHECGKVFRRNSHLARHQLIHTGEK   39 (46)
T ss_dssp             CCC-CTTCCC--------CEECTTTCCEESSHHHHHHHHTTTCCCC
T ss_pred             CCc-CCCCCC--------CeECCCCCchhCCHHHHHHHHHHcCCCC
Confidence            666 899999        9999999999999999999999887654

>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=98.25  E-value=5.1e-07  Score=63.50  Aligned_cols=43  Identities=26%  Similarity=0.638  Sum_probs=38.1

Q ss_pred             ccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCC
Q 023000           97 KKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPK  141 (289)
Q Consensus        97 ~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~  141 (289)
                      ..++|++..|++..+.  ||+|+.|++.||+.||....|.|+...
T Consensus        13 ~g~~Cs~~~C~~~dfl--pf~C~~C~~~FC~~HR~~e~H~C~~~~   55 (75)
T 1wys_A           13 IGQHCQVQHCRQRDFL--PFVCDGCSGIFCLEHRSKDSHGCSEVN   55 (75)
T ss_dssp             CCCCCSCTTTCCCSCC--CEECTTTCCEECSTTCSSGGGTCCCCS
T ss_pred             cCCCcCcccCCCccce--eeECcccCcCcCcccCCccccCCCCCc
Confidence            3578999999999664  999999999999999999999998543

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=1.7e-07  Score=58.52  Aligned_cols=39  Identities=15%  Similarity=0.213  Sum_probs=34.3

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++...
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (44)
T 2eox_A            2 SSGS-SGTDSK--------SYNCNECGKAFTRIFHLTRHQKIHTRKSG   40 (44)
T ss_dssp             CCCC-CCCCCC--------CEEETTTTEEESSSHHHHTTHHHHCCCCC
T ss_pred             CCCc-CCCCCC--------CeECcccCcccCCHHHHHHHHHHhCCCCC
Confidence            3666 899999        99999999999999999999999886543

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=2.9e-07  Score=58.01  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         3 h~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2enc_A            3 SGS-SGSGEK--------PFKCEECGKGFYTNSQCYSHQRSHSGEK   39 (46)
T ss_dssp             CSS-CCCCCC--------SEECSSSCCEESSHHHHHHHHHHSCCSS
T ss_pred             CCC-CCCCCC--------CcCCCCCCCcCCChHHHHHHHHHhCCCC
Confidence            556 889999        9999999999999999999999887653

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.24  E-value=2.4e-06  Score=58.93  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             CCCCCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          216 SSGTGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       216 ~~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      ...+++||.|.+|++.|.+...|.+|++ +|+++.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r-~Htg~~   40 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEA-QHGVTS   40 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHH-HHTTTS
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhh-hhCCCc
Confidence            3457899999999999999999999999 999875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=6.9e-07  Score=53.34  Aligned_cols=32  Identities=22%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      .+++||.|++|++.|.....|..|++ +|++++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~h~~~k   36 (37)
T 2elo_A            5 SSGRSYSCPVCEKSFSEDRLIKSHIK-TNHPEV   36 (37)
T ss_dssp             CCCCCCEETTTTEECSSHHHHHHHHH-HHCSSC
T ss_pred             CCCCCcCCCCCCCccCCHHHHHHHHH-HHcCCC
Confidence            36699999999999999999999999 999987

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2e-07  Score=58.80  Aligned_cols=38  Identities=13%  Similarity=0.202  Sum_probs=33.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~~   39 (46)
T 2en3_A            2 SSGS-SGTGEK--------PFQCKECGMNFSWSCSLFKHLRSHERTD   39 (46)
T ss_dssp             CCCC-CSCCCC--------SEECSSSCCEESSSHHHHHHHHHHHHSC
T ss_pred             cccc-ccCCCC--------CeeCcccChhhCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999987643

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=3.2e-07  Score=57.93  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=33.6

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      |++ +|++++        ||.|++|++.|.....|.+|+++|++...
T Consensus         3 h~~-~h~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em8_A            3 SGS-SGSGEK--------PYKCVECGKGYKRRLDLDFHQRVHTGEKL   40 (46)
T ss_dssp             CCC-CCCSCC--------SEECSSSCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCC-CCCCCC--------CeECcccCchhCCHHHHHHHHHHHcCCCC
Confidence            456 888888        99999999999999999999999887543

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2.6e-07  Score=58.27  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|....+|..|+++|++..
T Consensus         3 h~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2en6_A            3 SGS-SGSGEK--------PYGCNECGKTFSQKSILSAHQRTHTGEK   39 (46)
T ss_dssp             CSC-CCCSSC--------CEEETTTTEEESSHHHHHHHHHHHSSCC
T ss_pred             CCC-ccCCCc--------CeECCCCCcccCchHHHHHHHHHcCCCC
Confidence            566 899999        9999999999999999999999987654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.24  E-value=4.4e-08  Score=71.79  Aligned_cols=54  Identities=19%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      .+++||.|++|++.|.....|..|++ +|++++        ||+|..|    ....+|..|+++|.+
T Consensus        21 ~~~kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ek--------p~~C~~~----~~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           21 LQNSTYQCKHCDSKLQSTAELTSHLN-IHNEEF--------QKRAKRQ----ERRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHH-HHHHHH--------HHHCCCC----SCCCCCCCCCCCCCC
T ss_pred             CCCCCCcCCCCCCEeCCHHHHHHHHH-HhCCCC--------Ccccchh----hhHHHHHhhhccccc
Confidence            36699999999999999999999999 999999        9999765    456667777766554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2.1e-07  Score=58.69  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.+...|.+|+++|++..
T Consensus         3 H~~-~h~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2ysp_A            3 SGS-SGTGEK--------PYKCEKCGKGYNSKFNLDMHQKVHTGER   39 (46)
T ss_dssp             CCC-CCSSCC--------SEEETTTTEEESCHHHHHHHHTTSCSCC
T ss_pred             CCc-CCCCCC--------CeECCCCCCccCCHHHHHHHHHhhCCCC
Confidence            566 899999        9999999999999999999999887654

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2.6e-07  Score=58.20  Aligned_cols=38  Identities=16%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++ +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         2 ~H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eq3_A            2 SSGS-SGTGEK--------PYECNQCGKAFSVRSSLTTHQAIHTGKK   39 (46)
T ss_dssp             CCCC-SSCCCC--------SSEETTTTEECSSHHHHHHHHTTSCCCC
T ss_pred             Cccc-CCCCCC--------CeECCCCChhhCCHHHHHHHHHHhCCCC
Confidence            3667 899999        9999999999999999999999887654

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=2.2e-07  Score=58.63  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      |++ +|++++        ||.|++|++.|....+|..|+++|++
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoy_A            3 SGS-SGQKEK--------CFKCNKCEKTFSCSKYLTQHERIHTR   37 (46)
T ss_dssp             CCC-CCCCSC--------CEECSSSCCEESSSHHHHHHHTTCCS
T ss_pred             Ccc-ccCCCC--------CEECcCCCCcCCCHHHHHHHHHHcCC
Confidence            566 889999        99999999999999999999998876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.23  E-value=3.6e-07  Score=57.65  Aligned_cols=37  Identities=14%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|....+|..|+++|++..
T Consensus         3 h~~-~h~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2el6_A            3 SGS-SGAGVN--------PYKCSQCEKSFSGKLRLLVHQRMHTREK   39 (46)
T ss_dssp             SCC-SSCCCC--------SEECSSSSCEESSHHHHHHHHGGGCCSS
T ss_pred             CCC-CCCCCC--------CeECCCCCcccCCHHHHHHHHHHcCCCC
Confidence            556 888999        9999999999999999999999987654

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.23  E-value=2e-07  Score=58.77  Aligned_cols=39  Identities=15%  Similarity=0.255  Sum_probs=34.3

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +|++ +|++++        ||.|++|++.|.....|..|+++|++...
T Consensus         2 ~H~~-~H~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytg_A            2 SSGS-SGTGEK--------PFKCGECGKSYNQRVHLTQHQRVHTGEKP   40 (46)
T ss_dssp             CCCC-CCSSCC--------SEECTTTCCEESSSHHHHTTGGGGSSCCS
T ss_pred             CCCC-CCCCCC--------CeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            3667 899999        99999999999999999999999876543

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=8.6e-07  Score=52.62  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=18.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +++||.|.+|++.|...+.|..|++ +|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elv_A            6 SGLLYDCHICERKFKNELDRDRHML-VHGDK   35 (36)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHT-TTSTT
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-HhcCC
Confidence            4456666666666666666666655 55554

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=3.5e-07  Score=54.99  Aligned_cols=32  Identities=13%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHH-HHhhcC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEH-VERDHG  284 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H-~~~hh~  284 (289)
                      +|++++        ||+|++|++.|.....|..| +++|++
T Consensus         3 ~H~~~k--------~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGH--------LYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSC--------EEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCc--------CeECCCCCcccCCHHHHHHHHHHHccC
Confidence            566666        77777777777777777777 655543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=3.5e-07  Score=64.52  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=28.2

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++|.|++|++.|.....|.+|++..|.+++
T Consensus        36 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A           36 ALRFPCEFCGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             TCCEECTTTCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CcccCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            4899999999999999999999965888877

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=7.4e-07  Score=52.79  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +|++++        ||.|++|++.|.....|..|+++|++.
T Consensus         3 ~h~~~k--------~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGK--------PYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCC--------SEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCC--------CCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            567777        999999999999999999999988753

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.20  E-value=4.6e-07  Score=57.24  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=32.9

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHH-hhcCCC
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVE-RDHGGT  286 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~-~hh~g~  286 (289)
                      |++ +|++++        ||.|++|++.|.....|..|++ +|++..
T Consensus         3 H~~-~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~~H~~~k   40 (47)
T 2epx_A            3 SGS-SGTGKK--------PYECIECGKAFIQNTSLIRHWRYYHTGEK   40 (47)
T ss_dssp             CCC-CCCCCC--------SBCCSSSCCCBSSHHHHHHHHTTTTTTSC
T ss_pred             ccc-ccCCCC--------CEECCccCchhCChHHHHHHhHhhcCCCC
Confidence            566 899999        9999999999999999999998 776643

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=3.2e-07  Score=64.92  Aligned_cols=56  Identities=20%  Similarity=0.284  Sum_probs=49.2

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      -+++|+.|+.|++.|. ...|..|+  .|.+++        ||.|+.|++.|. ...|..|++++++.
T Consensus        13 c~~r~~~C~~C~~~~~-~~~L~~H~--~~c~~~--------~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A           13 CPLRLAVCQHCDLELS-ILKLKEHE--DYCGAR--------TELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCCEECSSSCCEEC-HHHHHHHH--HHHHHC--------EEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             CCCcccCCcccChHhh-HHHHHHHH--hHcCCC--------ceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            3679999999999995 89999995  688999        999999999988 58999999887653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=6.6e-07  Score=53.48  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=16.8

Q ss_pred             cccccccCcccCCh-hhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDP-VALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~-~~L~~H~~~hh~  284 (289)
                      ||+|++|++.|... ..|..|+++|++
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CeECCCCChhhccCHHHHHHHHHhcCC
Confidence            66666666666666 666666666554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.19  E-value=5.6e-07  Score=57.65  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=13.5

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      ++||.|.+|++.|.....|..|++.+|+++
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            344455445555544444444443234443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=1.1e-06  Score=52.07  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=29.2

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +|++++        ||.|++|++.|.....|..|+++|++.
T Consensus         3 ~h~~~~--------~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGK--------THLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCS--------SCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCC--------CeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            466677        999999999999999999999998754

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=9.1e-07  Score=52.50  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      .|++++        ||+|++|++.|.....|..|+++|++.
T Consensus         3 ~h~~~k--------~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGK--------PFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCC--------SEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCC--------CccCCCCCchhCCHHHHHHHHHHhccC
Confidence            567777        999999999999999999999988653

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.15  E-value=1e-06  Score=60.76  Aligned_cols=31  Identities=16%  Similarity=0.202  Sum_probs=28.6

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|++|++.|.....|.+|++ +|.+++
T Consensus        34 ~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~   64 (70)
T 1x5w_A           34 TDRPFKCNYCSFDTKQPSNLSKHMK-KFHGDM   64 (70)
T ss_dssp             CSCSEECSSSSCEESSHHHHHHHHH-HHHSSS
T ss_pred             CCCCEeCCCCCCccCCHHHHHHHHH-HHhCCC
Confidence            3489999999999999999999999 999888

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=8.9e-07  Score=52.55  Aligned_cols=32  Identities=13%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      .|++++        ||.|++|++.|.....|..|+++|++
T Consensus         3 ~h~~~k--------~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            3 SGSSGL--------LYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CSCCCC--------CEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCC--------CeECCCCCCccCCHHHHHHHHHHhcC
Confidence            567777        99999999999999999999998865

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.14  E-value=1.4e-06  Score=56.97  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=29.4

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|++||+.|...+.|..|++ +|++++
T Consensus        21 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   51 (54)
T 1yui_A           21 SEQPATCPICYAVIRQSRNLRRHLE-LRHFAK   51 (54)
T ss_dssp             SSCCEECTTTCCEESSHHHHHHHHH-HHTTTS
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHH-HhccCC
Confidence            4589999999999999999999999 999999

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=1.3e-06  Score=55.12  Aligned_cols=34  Identities=15%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++++        ||.|++|++.|.+..+|..|+++|++..
T Consensus         6 ~h~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2eom_A            6 SGHGER--------GHRCSDCGKFFLQASNFIQHRRIHTGEK   39 (46)
T ss_dssp             CCCCCS--------SCCCSSSCCCCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCC--------CcCCCCCCCeeCChHHHHHHHHHhCCCC
Confidence            788888        9999999999999999999999987654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.13  E-value=1.4e-06  Score=52.79  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      ||.|++|++.|.....|..|+++|++...
T Consensus         6 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            6 SYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             ceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            99999999999999999999999887543

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=1.2e-06  Score=53.68  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=30.7

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++++        ||.|++|++.|.....|..|+++|++..
T Consensus         4 ~h~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   37 (41)
T 2ept_A            4 GSSGQR--------VYECQECGKSFRQKGSLTLHERIHTGSG   37 (41)
T ss_dssp             SCCCCC--------CEECSSSCCEESSHHHHHHHGGGCCCCS
T ss_pred             ccCCCC--------CeECCCCCCCcCCHHHHHHHHHHhCCCC
Confidence            678888        9999999999999999999999887654

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=2e-06  Score=53.43  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++++        ||.|++|++.|....+|.+|+++|++..
T Consensus         4 ~h~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   37 (43)
T 2yrm_A            4 GSSGNG--------AFFCNECDCRFSEEASLKRHTLQTHSDK   37 (43)
T ss_dssp             CCSSSC--------CBCCSSSCCCBSSHHHHHHHHHHHTCTT
T ss_pred             CcCCCC--------CEECCCCCCeeCChHHHHHHHHhhCCCC
Confidence            678888        9999999999999999999999987654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.12  E-value=3.3e-06  Score=50.25  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=28.1

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      .+++||.|++|++.|.....|..|++ +|+++
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   37 (37)
T 1p7a_A            7 TGIKPFQCPDCDRSFSRSDHLALHRK-RHMLV   37 (37)
T ss_dssp             CCSSSBCCTTTCCCBSSHHHHHHHHG-GGTCC
T ss_pred             CCCCCccCCCCCcccCcHHHHHHHHH-HhccC
Confidence            36799999999999999999999998 89864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.12  E-value=1.5e-06  Score=51.46  Aligned_cols=27  Identities=19%  Similarity=0.301  Sum_probs=25.2

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|++|++.|.....|..|+++|++.
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            9 IFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            999999999999999999999998753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.11  E-value=1.8e-06  Score=48.42  Aligned_cols=28  Identities=36%  Similarity=0.662  Sum_probs=15.1

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +||.|..||+.|.....|..|++ +|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLE-THDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH-TTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHH-HhccC
Confidence            45555555555555555555555 55443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.11  E-value=1.6e-06  Score=52.01  Aligned_cols=31  Identities=29%  Similarity=0.513  Sum_probs=24.1

Q ss_pred             CCCccccC--ccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCP--QCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|.  .|++.|...+.|.+|++ +|++++
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k   35 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKH-KHEMTL   35 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHH-HHHTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            45788888  48888888888888877 787777

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.11  E-value=1.1e-06  Score=60.89  Aligned_cols=31  Identities=32%  Similarity=0.542  Sum_probs=28.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|++|++.|.....|.+|++ +|+++.
T Consensus        39 ~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~   69 (72)
T 1x6e_A           39 GEKPYKCLECGKAFSQNSGLINHQR-IHTSGP   69 (72)
T ss_dssp             CSCCEECSSSCCEESSHHHHHHHHH-HHHSSS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH-hcCCCC
Confidence            3489999999999999999999999 998765

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=1.9e-06  Score=51.35  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=28.8

Q ss_pred             CCCCccccCccCcccCCh-HHHHHHHHhhcCCCC
Q 023000          218 GTGGTELCPQCGARFSSV-TTLIEHVEKIHDRSG  250 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~-~~L~~H~~~~h~~~k  250 (289)
                      .+++||.|++|++.|... +.|.+|++ +|++++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~~L~~H~~-~H~~~k   37 (37)
T 2elp_A            5 SSGRAMKCPYCDFYFMKNGSDLQRHIW-AHEGVK   37 (37)
T ss_dssp             CCCCCEECSSSSCEECSSCHHHHHHHH-HHHTCC
T ss_pred             CCCCCeECCCCChhhccCHHHHHHHHH-hcCCCC
Confidence            366999999999999999 99999998 998764

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.09  E-value=1.3e-06  Score=55.03  Aligned_cols=34  Identities=15%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++++        ||.|++|++.|....+|..|+++|++..
T Consensus         6 ~h~~~k--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ytt_A            6 SGEGEK--------PYQCSECGKSFSGSYRLTQHWITHTREK   39 (46)
T ss_dssp             SCSCCC--------TTCCSSSCCCCSSHHHHHHHHTHHHHCC
T ss_pred             CCCCCC--------CeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            788888        9999999999999999999999987654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.08  E-value=8.4e-07  Score=55.62  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++++        ||+|++|++.|.....|..|+++|++..
T Consensus         6 ~h~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (45)
T 2epu_A            6 SGTGQK--------PFECTHCGKSFRAKGNLVTHQRIHTGEK   39 (45)
T ss_dssp             CCCSCC--------SEEETTTTEEESSHHHHHHHHTTTSSCC
T ss_pred             CCCCCc--------CccCCCCCCccCChHHHHHHHHHhCCCC
Confidence            688888        9999999999999999999999987654

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.07  E-value=2.4e-06  Score=53.42  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      +|++++        ||.|++|++.|.....|..|+++|++...
T Consensus         4 ~h~~~k--------~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   38 (45)
T 2epq_A            4 GSSGEK--------PYSCPVCGLRFKRKDRMSYHVRSHDGSVG   38 (45)
T ss_dssp             CCSSCC--------SSEETTTTEECSCHHHHHHHHHHHSCCCC
T ss_pred             CcCCCC--------CCcCCCCCcccCCHHHHHHHHHHccCCCC
Confidence            678888        99999999999999999999999887543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.06  E-value=3.1e-06  Score=47.18  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=13.2

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      ||.|++|++.|.....|..|+++|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhc
Confidence            4555555555555555555555443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.05  E-value=2.2e-06  Score=47.88  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=12.4

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      ||.|++|++.|.....|..|+++|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhc
Confidence            4455555555555555555554443

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.05  E-value=1.1e-06  Score=55.23  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++++        ||.|++|++.|.....|.+|+++|++..
T Consensus         6 ~h~~~~--------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ep0_A            6 SGTGEK--------PYKCDVCHKSFRYGSSLTVHQRIHTGEK   39 (46)
T ss_dssp             SSTTCC--------SEECSSSCCEESSHHHHHHHHTTTSSSC
T ss_pred             CCCCCC--------CeeCcccCcccCChHHHHHHHHHhCCCC
Confidence            788888        9999999999999999999999887654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.04  E-value=2.4e-07  Score=53.84  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|++||+.|...+.|.+|++ +|++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~-~H~~~k   29 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIK-TAFIVV   29 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTT-SSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH-HHccCC
Confidence            47888888888888888888877 888877

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.04  E-value=3.9e-06  Score=48.93  Aligned_cols=29  Identities=21%  Similarity=0.360  Sum_probs=26.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      ||.|++|++.|....+|..|+++|++...
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~   30 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGE   30 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            89999999999999999999999887654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.03  E-value=3.7e-06  Score=57.98  Aligned_cols=28  Identities=21%  Similarity=0.350  Sum_probs=26.5

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ||+|.+|++.|.+..+|.+|+++|+++.
T Consensus        13 py~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A           13 ILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            9999999999999999999999998764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.03  E-value=3e-06  Score=59.50  Aligned_cols=30  Identities=30%  Similarity=0.530  Sum_probs=26.5

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      ++|.|++|++.|.....|..|++..|..+.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            799999999999999999999994566665

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=98.03  E-value=3.8e-06  Score=56.81  Aligned_cols=41  Identities=27%  Similarity=0.736  Sum_probs=35.6

Q ss_pred             ccCcCCcCCCCC-cccccccCCccCcccccCCCccccccCCCCCC
Q 023000            9 LGKHCSLPDCKQ-IDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER   52 (289)
Q Consensus         9 ~g~~C~~~~C~~-~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~   52 (289)
                      .-.+|.  .|++ +++++|+| .|+..||..|+..+.|.|.-...
T Consensus        14 ~~~rC~--~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk   55 (64)
T 1wg2_A           14 PNNRCF--SCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFK   55 (64)
T ss_dssp             CSCSCT--TTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCS
T ss_pred             cCCcCh--hhCCcccccCeEe-ecCCEecccCCCccccCCCcchh
Confidence            346898  9998 69999999 89999999999999999976544

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.02  E-value=4e-06  Score=48.11  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=13.0

Q ss_pred             CccccC--ccCcccCChHHHHHHHHhhcCC
Q 023000          221 GTELCP--QCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       221 kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      +||.|.  .||+.|.....|..|++ +|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKK-SHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG-GGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHH-HccC
Confidence            344454  45555555555555544 4444

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.02  E-value=4.3e-06  Score=54.82  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|++|++.|.....|.+|++ +|.+++
T Consensus        26 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k   56 (57)
T 1bbo_A           26 DVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK   56 (57)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHH-SSSSCC
T ss_pred             CCCCccCCCCCchhcCHHHHHHHHH-HhcccC
Confidence            3489999999999999999999999 998875

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.00  E-value=5e-06  Score=56.62  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=27.9

Q ss_pred             CCCccccC-ccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCP-QCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~-~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|+ +||+.|...+.|..|++ +|...+
T Consensus        33 ~~~p~~C~~~C~k~f~~~~~L~~H~~-~hc~~~   64 (66)
T 2eod_A           33 PRLPVACPNQCGVGTVAREDLPGHLK-DSCNTA   64 (66)
T ss_dssp             SSSEEECTTCCSCCEEETTTHHHHHH-TTSSSC
T ss_pred             CCcCccCCcccCcccccHHHHHHHHH-hhcccC
Confidence            45899999 99999999999999998 887665

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.99  E-value=3.5e-06  Score=46.69  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=13.0

Q ss_pred             cccccccCcccCChhhHHHHHHhh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||.|++|++.|.....|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CccCCCCCcccCCHHHHHHHHHhc
Confidence            555555555555555555555444

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=3.1e-06  Score=47.10  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=13.1

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      ||.|++|++.|.....|..|+++|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHHhc
Confidence            4555555555555555555555444

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.98  E-value=3.3e-06  Score=46.34  Aligned_cols=25  Identities=24%  Similarity=0.467  Sum_probs=14.0

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      ||+|++|++.|.....|.+|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            3555566666666666666655544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.98  E-value=4.7e-06  Score=47.49  Aligned_cols=26  Identities=31%  Similarity=0.643  Sum_probs=12.5

Q ss_pred             ccccC--ccCcccCChHHHHHHHHhhcCC
Q 023000          222 TELCP--QCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       222 p~~C~--~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      ||.|+  .||+.|...+.|..|++ +|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~-~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR-THTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT-TTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH-HhcC
Confidence            44444  45555544444544444 4444

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.98  E-value=3.7e-06  Score=50.32  Aligned_cols=29  Identities=21%  Similarity=0.531  Sum_probs=13.9

Q ss_pred             CCccccC--ccCcccCChHHHHHHHHhhcCCC
Q 023000          220 GGTELCP--QCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       220 ~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      ++||.|.  .||+.|...+.|.+|++ +|+++
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~e   36 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLR-WHTGE   36 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHH-HHHTT
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            3445554  25555555555555544 44443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=3.9e-06  Score=50.23  Aligned_cols=30  Identities=23%  Similarity=0.403  Sum_probs=27.4

Q ss_pred             CCCccccCccCcccCChHHHHHH-HHhhcCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEH-VEKIHDRS  249 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H-~~~~h~~~  249 (289)
                      +++||.|++|++.|.....|..| ++ +|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~L~~H~~~-~H~~~   36 (37)
T 2elm_A            6 SGHLYYCSQCHYSSITKNCLKRHVIQ-KHSNI   36 (37)
T ss_dssp             SSCEEECSSSSCEEECHHHHHHHHHH-HTCCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHH-HccCc
Confidence            56999999999999999999999 77 89875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=3.2e-06  Score=46.93  Aligned_cols=26  Identities=23%  Similarity=0.478  Sum_probs=15.9

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||.|+.|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            56666666666666666666655554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.97  E-value=4.2e-06  Score=46.09  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=13.2

Q ss_pred             cccccccCcccCChhhHHHHHHhh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||.|+.||+.|.....|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CccCCCcChhhCCHHHHHHHHHHc
Confidence            555555555555555555555544

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=97.97  E-value=5.5e-06  Score=55.92  Aligned_cols=41  Identities=27%  Similarity=0.676  Sum_probs=35.6

Q ss_pred             ccCcCCcCCCCC-cccccccCCccCcccccCCCccccccCCCCCC
Q 023000            9 LGKHCSLPDCKQ-IDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER   52 (289)
Q Consensus         9 ~g~~C~~~~C~~-~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~   52 (289)
                      .-.+|.  .|++ +++++|+| .|+..||..|+..+.|.|.-...
T Consensus        14 ~~~rC~--~C~kkvgl~~f~C-rCg~~FC~~HRy~e~H~C~fDyk   55 (64)
T 1wfh_A           14 RPNRCT--VCRKRVGLTGFMC-RCGTTFCGSHRYPEVHGCTFDFK   55 (64)
T ss_dssp             SCCCCT--TTCCCCCTTCEEC-SSSCEECTTTCSTTTTTCCCCCS
T ss_pred             cCCcCh--hhCCccCccCEEe-ecCCEeccccCCcccCCCCchhh
Confidence            447898  9998 69999999 69999999999999999975544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.97  E-value=4e-06  Score=50.14  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             hcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHHHhhcCC
Q 023000          245 IHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      .|++++        ||.|.+  |++.|...+.|.+|+++|++.
T Consensus         2 ~~~~~k--------~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKK--------QHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCC--------CEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCC--------CCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            366777        999985  999999999999999998764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.97  E-value=3.2e-06  Score=46.58  Aligned_cols=27  Identities=19%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      ++||.|+.||+.|.....|..|++ +|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~-~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLR-THG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH-HCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHH-Hcc
Confidence            479999999999999999999998 774

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.96  E-value=3e-06  Score=47.02  Aligned_cols=28  Identities=29%  Similarity=0.502  Sum_probs=25.6

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      ++||.|++|++.|.....|..|++ +|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYR-VHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHT-TSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-hcCC
Confidence            479999999999999999999998 8864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.96  E-value=4.2e-06  Score=50.53  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=19.3

Q ss_pred             CCCccccCccCcccCChHHHHHHH
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHV  242 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~  242 (289)
                      +++||.|++||++|.+.++|.+|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            668888888888888888888885

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.95  E-value=3.2e-06  Score=46.74  Aligned_cols=24  Identities=21%  Similarity=0.450  Sum_probs=12.9

Q ss_pred             cccccccCcccCChhhHHHHHHhh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||+|++||+.|...+.|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhc
Confidence            555555555555555555555443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.95  E-value=5.4e-06  Score=49.63  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             cCCCCCCCCCCCCccccc--ccCcccCChhhHHHHHHhhcCCCC
Q 023000          246 HDRSGNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       246 h~~~k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      |++++        ||.|.  .|++.|....+|.+|+++|++...
T Consensus         1 H~~~k--------~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            1 MSDDK--------PFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CTTCC--------CEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCCCc--------ceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            45677        99999  599999999999999999987643

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=97.95  E-value=7.5e-06  Score=54.30  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=27.4

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|+.|++.|.....|..|++.+|.++.
T Consensus        27 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A           27 NEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            34799999999999999999999754888754

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.95  E-value=6e-06  Score=46.17  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=14.0

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||.|++|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcc
Confidence            45555555555555555555555443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.94  E-value=2.6e-06  Score=47.16  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=24.7

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      ++||.|++||+.|...+.|..|++ +|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMR-GHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHT-TCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH-hcC
Confidence            479999999999999999999988 774

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.93  E-value=2.7e-06  Score=62.93  Aligned_cols=44  Identities=20%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             cCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccC-ChhhHHHHHHhhcC
Q 023000          232 FSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFC-DPVALVEHVERDHG  284 (289)
Q Consensus       232 F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~-~~~~L~~H~~~hh~  284 (289)
                      +.....+..|++ +|.+++        +|.|++|++.|. ....|.+|+++|++
T Consensus         6 ~~~~~~~~~h~~-~h~~~~--------~~~C~~C~k~f~~~~~~L~~H~~~h~~   50 (98)
T 2gqj_A            6 SGPGGPEEQWQR-AIHERG--------EAVCPTCNVVTRKTLVGLKKHMEVCQK   50 (98)
T ss_dssp             CCCCCSCSHHHH-TTTTTS--------CCCCTTTCCCCSSCSHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHH-HhccCC--------CcCCCCCCCChhhhHHHHHHHHHHHcC
Confidence            334455778988 999999        999999999999 99999999999875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.92  E-value=8.5e-07  Score=56.42  Aligned_cols=36  Identities=11%  Similarity=0.188  Sum_probs=27.6

Q ss_pred             HHHHhhcCCCCCCCCCCCCccccc--ccCcccCChhhHHHHHHhhcC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      .|.. .|++++        ||.|+  .|++.|...++|..|+++|++
T Consensus         8 ~~~~-~H~~~k--------~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A            8 DKYV-KEMPDK--------TFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             GGSC-EEETTT--------EEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             HHHh-ccCCCC--------CeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            3445 677888        88885  688888888888888887765

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.15  E-value=1.4e-06  Score=48.86  Aligned_cols=25  Identities=24%  Similarity=0.561  Sum_probs=13.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      ||.|++|++.|....+|..|+++|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            4555555555555555555555544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.91  E-value=2.8e-06  Score=57.60  Aligned_cols=29  Identities=24%  Similarity=0.446  Sum_probs=25.7

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      +++||.|+.|++.|.....|..|++ .|.+
T Consensus        37 ~~~~~~C~~C~k~f~~~~~L~~H~~-~~H~   65 (66)
T 2drp_A           37 NVKVYPCPFCFKEFTRKDNMTAHVK-IIHK   65 (66)
T ss_dssp             SCCCEECTTTCCEESCHHHHHHHHH-HHTC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHH-HHcC
Confidence            3489999999999999999999998 6654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.14  E-value=1.4e-06  Score=49.00  Aligned_cols=25  Identities=40%  Similarity=0.664  Sum_probs=13.2

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      ||.|+.|++.|....+|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            4555555555555555555555443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.91  E-value=7.7e-06  Score=45.46  Aligned_cols=29  Identities=21%  Similarity=0.395  Sum_probs=26.7

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|++|++.|.....|..|++ +|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH-HHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHH-HhcCCC
Confidence            58999999999999999999999 998764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.90  E-value=6.6e-06  Score=52.49  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHH-hhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVE-RDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~-~hh~g~  286 (289)
                      +|++++        ||.|.+|++.|....+|.+|++ +|++..
T Consensus         1 ~Ht~~k--------p~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDK--------PYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTS--------CEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCc--------CEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            478888        9999999999999999999998 776543

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=97.90  E-value=6.6e-06  Score=55.61  Aligned_cols=43  Identities=26%  Similarity=0.617  Sum_probs=34.7

Q ss_pred             cccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCCC
Q 023000           96 TKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        96 ~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      .+.++|.  .|++.+... +|+| .|+..||.+||+...|.|..--+
T Consensus        13 ~~~~rC~--~C~kkvgl~-~f~C-rCg~~FC~~HR~~e~H~C~fDyk   55 (64)
T 1wg2_A           13 RPNNRCF--SCNKKVGVM-GFKC-KCGSTFCGSHRYPEKHECSFDFK   55 (64)
T ss_dssp             CCSCSCT--TTCCCCTTS-CEEC-TTSCEECSSSCSSTTTTCCCCCS
T ss_pred             CcCCcCh--hhCCccccc-CeEe-ecCCEecccCCCccccCCCcchh
Confidence            3567887  788875433 8999 89999999999999999985433

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=5.8e-06  Score=46.23  Aligned_cols=27  Identities=26%  Similarity=0.591  Sum_probs=25.0

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|++|++.|.....|..|+++|++.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhccC
Confidence            899999999999999999999988753

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.89  E-value=6.4e-06  Score=46.27  Aligned_cols=20  Identities=30%  Similarity=0.585  Sum_probs=10.1

Q ss_pred             ccccCccCcccCChHHHHHH
Q 023000          222 TELCPQCGARFSSVTTLIEH  241 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H  241 (289)
                      ||.|+.||+.|...+.|..|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHH
Confidence            44555555555555555555

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.89  E-value=7.5e-06  Score=44.80  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=23.7

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      ||.|++||+.|.....|..|++ +|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~-~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR-VHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG-GTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHH-HcCCC
Confidence            6899999999999999999998 88864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.88  E-value=6.1e-06  Score=45.96  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=26.8

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|++||+.|.....|..|++ +|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHIL-LHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHT-GGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHH-HhcCCC
Confidence            58999999999999999999999 998864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.87  E-value=8e-06  Score=45.23  Aligned_cols=29  Identities=34%  Similarity=0.756  Sum_probs=26.7

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|++|++.|.....|..|++ +|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLK-IHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHH-HHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH-HhccCC
Confidence            58999999999999999999998 898764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.86  E-value=1.1e-05  Score=45.04  Aligned_cols=29  Identities=21%  Similarity=0.360  Sum_probs=26.9

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|++||+.|...+.|..|++ +|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIK-TKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHH-HHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHH-HHccCC
Confidence            58999999999999999999999 998876

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.86  E-value=6.8e-06  Score=45.60  Aligned_cols=28  Identities=32%  Similarity=0.737  Sum_probs=25.7

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +||.|++|++.|.....|..|++ +|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLR-IHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHH-HHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHH-HhcCC
Confidence            58999999999999999999998 88764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.85  E-value=6.6e-06  Score=53.89  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=25.2

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcC
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      +++||.|++|++.|.....|..|++ +|.
T Consensus        29 ~~~~~~C~~C~~~f~~~~~l~~H~~-~hh   56 (57)
T 3uk3_C           29 GEKPYKCEFCEYAAAQKTSLRYHLE-RHH   56 (57)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHH-HHC
T ss_pred             CCCCcCCCCCcchhCCHHHHHHHHH-Hhc
Confidence            3489999999999999999999998 765

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=97.84  E-value=1.1e-05  Score=54.56  Aligned_cols=43  Identities=23%  Similarity=0.623  Sum_probs=34.5

Q ss_pred             cccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCCC
Q 023000           96 TKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        96 ~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      .+.++|+  .|++++... +|+| .|+..||.+||+...|.|..--+
T Consensus        13 ~~~~rC~--~C~kkvgl~-~f~C-rCg~~FC~~HRy~e~H~C~fDyk   55 (64)
T 1wfh_A           13 QRPNRCT--VCRKRVGLT-GFMC-RCGTTFCGSHRYPEVHGCTFDFK   55 (64)
T ss_dssp             SSCCCCT--TTCCCCCTT-CEEC-SSSCEECTTTCSTTTTTCCCCCS
T ss_pred             CcCCcCh--hhCCccCcc-CEEe-ecCCEeccccCCcccCCCCchhh
Confidence            3568887  788875433 8999 69999999999999999985433

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=97.82  E-value=1.1e-06  Score=68.00  Aligned_cols=52  Identities=17%  Similarity=0.247  Sum_probs=43.9

Q ss_pred             CccccCccCcccC------ChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhh
Q 023000          221 GTELCPQCGARFS------SVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       221 kp~~C~~Cgk~F~------~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      +++.|++|++.|.      ....|..|+  .|++++        ||.|++|++.|....+|..|+++|
T Consensus        40 ~~~~c~~~~~~~~~~~~~~~~~~l~~h~--~h~~~~--------~~~C~~C~k~f~~~~~l~~H~~~H   97 (129)
T 2wbt_A           40 KRLIRAIVKTLIHNPQLLDESSYLYRLL--ASKAIS--------QFVCPLCLMPFSSSVSLKQHIRYT   97 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGTTTHHHHHHHH--HHHHHC--------SEECTTTCCEESSHHHHHHHHHHT
T ss_pred             CcccchhhhcccCCCcccCCHHHHHHHH--HhCCCC--------CeECCCCCcccCCHhHHHHHHHHC
Confidence            5778888876665      666677774  588899        999999999999999999999887

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.02  E-value=2.6e-06  Score=47.88  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=26.2

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      ++||.|+.||+.|.....|..|++ +|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVR-IHTGE   29 (30)
Confidence            479999999999999999999998 88753

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.81  E-value=1.5e-05  Score=45.54  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=25.1

Q ss_pred             ccccc--ccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCP--KCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~--~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|+  .|++.|.....|..|+++|++.
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            99999  8999999999999999998764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.80  E-value=9.2e-06  Score=48.96  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=21.7

Q ss_pred             cccccccCcccCChhhHHHHHHh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVER  281 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~  281 (289)
                      ||+|++||+.|.+.++|++|+..
T Consensus         8 p~~C~~CgK~F~~~s~L~~H~py   30 (36)
T 1fv5_A            8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCEETTTTEECSCHHHHHHHHHH
T ss_pred             CeECCCCCCccCCHhHccCcCCe
Confidence            99999999999999999999843

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=97.79  E-value=1.2e-05  Score=55.82  Aligned_cols=39  Identities=31%  Similarity=0.855  Sum_probs=34.5

Q ss_pred             CcCCcCCCCC-cccccccCCccCcccccCCCccccccCCCCCC
Q 023000           11 KHCSLPDCKQ-IDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER   52 (289)
Q Consensus        11 ~~C~~~~C~~-~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~   52 (289)
                      .+|.  .|++ +++++|+|. |+..||..||..+.|.|.-...
T Consensus        26 nRC~--~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk   65 (74)
T 1wfl_A           26 NRCF--MCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYK   65 (74)
T ss_dssp             TBCS--SSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGG
T ss_pred             CcCh--hhCCcccccCeecC-CCCEechhcCCCccCCCcchhh
Confidence            4798  5999 599999999 9999999999999999976543

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.79  E-value=1.7e-05  Score=55.08  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=28.4

Q ss_pred             hcCCCCCCCCCCCCcccccc--cCcccCChhhHHHHH-HhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPK--CSQGFCDPVALVEHV-ERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~--C~k~F~~~~~L~~H~-~~hh~g~  286 (289)
                      .++++|        ||+|.+  |+++|.+.++|++|+ ++|++.-
T Consensus        21 ~~sGEK--------PYkC~~~~CgKaFsr~s~L~~H~rriHTgEK   57 (73)
T 1x3c_A           21 RYSPYR--------PYRCVHQGCFAAFTIQQNLILHYQAVHKSDL   57 (73)
T ss_dssp             SSCSSC--------SCBCCSTTCCCBCSSHHHHHHHHHHHSSSCC
T ss_pred             cccCCC--------CeECCCCCcChhHcCHHHHHHHhhhhCCCCC
Confidence            467788        999975  999999999999998 5676543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.78  E-value=1.3e-05  Score=45.56  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=24.8

Q ss_pred             ccccc--ccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCP--KCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~--~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|+  .||+.|.....|..|+++|++.
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            89998  9999999999999999988754

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.98  E-value=3.2e-06  Score=46.12  Aligned_cols=24  Identities=25%  Similarity=0.660  Sum_probs=16.7

Q ss_pred             cccccccCcccCChhhHHHHHHhh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||.|++||+.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            667777777777777777776655

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=97.76  E-value=1.8e-05  Score=54.98  Aligned_cols=40  Identities=28%  Similarity=0.725  Sum_probs=34.4

Q ss_pred             cCcCCcCCCC-CcccccccCCccCcccccCCCccccccCCCCCC
Q 023000           10 GKHCSLPDCK-QIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER   52 (289)
Q Consensus        10 g~~C~~~~C~-~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~   52 (289)
                      -.+|.  .|+ ++++++|+| .|+..||..|+..+.|.|.-...
T Consensus        25 ~~RC~--~C~kkvgL~~f~C-rCg~~FCs~HRy~e~H~C~fDyk   65 (74)
T 1wfp_A           25 ATRCL--SCNKKVGVTGFKC-RCGSTFCGTHRYPESHECQFDFK   65 (74)
T ss_dssp             CCBCS--SSCCBCTTTCEEC-TTSCEECTTTCSTTTSCCCSCTT
T ss_pred             Cccch--hhcCcccccceEe-ccCCEeccccCCCcCCCCcCchh
Confidence            35787  898 559999999 79999999999999999976654

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=7e-06  Score=51.81  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             hcCCCCCCCCCCCCccccc--ccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|++++        ||.|.  +|++.|.....|.+|+++|++..
T Consensus         6 ~H~~~k--------~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   41 (48)
T 2ent_A            6 SGTGEK--------PFACTWPGCGWRFSRSDELSRHRRSHSGVK   41 (48)
T ss_dssp             SSCCCC--------CEECCSSSCCCEESSHHHHHHHHTTSCCCC
T ss_pred             CcCCCC--------CeECCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            788888        99998  89999999999999999887654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.95  E-value=3.8e-06  Score=47.00  Aligned_cols=29  Identities=31%  Similarity=0.598  Sum_probs=26.6

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|++||+.|.....|..|++ +|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVR-QHTGEK   29 (29)
Confidence            58999999999999999999998 998764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.71  E-value=1.9e-05  Score=58.28  Aligned_cols=46  Identities=15%  Similarity=0.095  Sum_probs=41.3

Q ss_pred             cccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCccc-CChhhHHHHHHhhcCC
Q 023000          230 ARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGF-CDPVALVEHVERDHGG  285 (289)
Q Consensus       230 k~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F-~~~~~L~~H~~~hh~g  285 (289)
                      ..|.....|..|++ .|.+++        ||.|++|++.| ....+|..|+++| +.
T Consensus        14 ~~~~~~~~~~~~~~-~~~~~~--------~~~C~~C~k~F~~~~~~L~~H~~~h-~~   60 (96)
T 2ctd_A           14 PVYAAGSLEEQWYL-EIVDKG--------SVSCPTCQAVGRKTIEGLKKHMENC-KQ   60 (96)
T ss_dssp             CSSCTTCHHHHHHH-HHHHTS--------CEECTTTCSCEESSHHHHHHHHHHH-CC
T ss_pred             CCCCCchHHHHHHH-HhcCCC--------CcCCCCCCCCcccCHHHHHHHHHHH-CC
Confidence            46778888999988 899999        99999999999 9999999999988 53

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=97.70  E-value=2.1e-05  Score=54.62  Aligned_cols=43  Identities=26%  Similarity=0.645  Sum_probs=34.7

Q ss_pred             cccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCCC
Q 023000           96 TKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        96 ~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      .+.++|.  .|++.+... +|+| .|+..||.+||+...|.|..--+
T Consensus        23 ~~~~RC~--~C~kkvgL~-~f~C-rCg~~FCs~HRy~e~H~C~fDyk   65 (74)
T 1wfp_A           23 STATRCL--SCNKKVGVT-GFKC-RCGSTFCGTHRYPESHECQFDFK   65 (74)
T ss_dssp             CCCCBCS--SSCCBCTTT-CEEC-TTSCEECTTTCSTTTSCCCSCTT
T ss_pred             ccCccch--hhcCccccc-ceEe-ccCCEeccccCCCcCCCCcCchh
Confidence            3567887  688775443 8999 79999999999999999985433

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.87  E-value=5.4e-06  Score=45.18  Aligned_cols=26  Identities=35%  Similarity=0.792  Sum_probs=23.7

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      +||.|++||+.|.....|..|++ +|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~-~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIR-HHD   26 (26)
Confidence            58999999999999999999988 763

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.68  E-value=1.8e-05  Score=50.10  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=26.0

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ||.|++|++.|.....|.+|+++|++..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (48)
T 2epr_A           12 QVACEICGKIFRDVYHLNRHKLSHSGEK   39 (48)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHhcCCCC
Confidence            9999999999999999999999987654

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=97.67  E-value=3.1e-05  Score=55.37  Aligned_cols=39  Identities=33%  Similarity=0.730  Sum_probs=32.9

Q ss_pred             cCcCCcCCCCC-cccc-cccCCccCcccccCCCccccccCCCCC
Q 023000           10 GKHCSLPDCKQ-IDFL-PFTCDCCHKVFCLDHRSYNQHQCPKAE   51 (289)
Q Consensus        10 g~~C~~~~C~~-~dfL-Pf~C~~C~k~Fc~~h~~~~~H~c~~~~   51 (289)
                      ..+|.  .|++ ++++ ||+|. |+..||..|+..+.|.|.-..
T Consensus        25 ~~rC~--~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDy   65 (85)
T 1wff_A           25 MKHCF--LCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDY   65 (85)
T ss_dssp             CCBCS--SSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCC
T ss_pred             Cccch--hhCCeecccCCeEcC-CCCEecccCCCccCCCCcchh
Confidence            35888  4998 6664 99996 999999999999999997644

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.67  E-value=1.4e-05  Score=50.56  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=28.0

Q ss_pred             CCCccccC--ccCcccCChHHHHHHHHhhcCCCC
Q 023000          219 TGGTELCP--QCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       219 ~~kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +++||.|+  .||+.|...+.|.+|++ +|++++
T Consensus        15 ~~k~~~C~~~~C~k~F~~~~~L~~H~~-~H~~ek   47 (47)
T 1ncs_A           15 PDKTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHH-HccCCC
Confidence            56999995  79999999999999999 999874

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=97.64  E-value=2.1e-05  Score=56.26  Aligned_cols=40  Identities=28%  Similarity=0.740  Sum_probs=33.6

Q ss_pred             ccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCC
Q 023000           97 KKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPG  139 (289)
Q Consensus        97 ~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~  139 (289)
                      ..++|..  |++.+....+|+|. ||..||.+||+...|.|..
T Consensus        24 ~~~rC~~--C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~f   63 (85)
T 1wff_A           24 IMKHCFL--CGKKTGLATSFECR-CGNNFCASHRYAEAHGCNY   63 (85)
T ss_dssp             CCCBCSS--SCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCS
T ss_pred             cCccchh--hCCeecccCCeEcC-CCCEecccCCCccCCCCcc
Confidence            4578887  77775544599996 9999999999999999985

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.64  E-value=3.1e-05  Score=52.82  Aligned_cols=40  Identities=33%  Similarity=0.618  Sum_probs=35.5

Q ss_pred             cCcCCcCCCCCccccc----ccCCccCcccccCCCccccccCCCCCC
Q 023000           10 GKHCSLPDCKQIDFLP----FTCDCCHKVFCLDHRSYNQHQCPKAER   52 (289)
Q Consensus        10 g~~C~~~~C~~~dfLP----f~C~~C~k~Fc~~h~~~~~H~c~~~~~   52 (289)
                      -.+|.  .|++...|+    |+| .|+..||..|+..+.|.|.-...
T Consensus        15 ~~rC~--~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~C~fDyk   58 (67)
T 1x4w_A           15 RRRCF--QCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDCTFDHM   58 (67)
T ss_dssp             TTBCS--SSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGTCSSCSS
T ss_pred             CCcch--hhCCeecccccCceEe-cCCCEehhccCCccccCCccccc
Confidence            35788  599999999    999 89999999999999999976554

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=97.64  E-value=3.4e-05  Score=53.55  Aligned_cols=39  Identities=33%  Similarity=0.841  Sum_probs=32.8

Q ss_pred             ccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCC
Q 023000           97 KKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPG  139 (289)
Q Consensus        97 ~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~  139 (289)
                      +.++|..  |++++... +|.|. |+..||.+||+...|.|..
T Consensus        24 ~~nRC~~--CrKkvgL~-gf~Cr-Cg~~FCs~HRy~e~H~C~f   62 (74)
T 1wfl_A           24 KKNRCFM--CRKKVGLT-GFDCR-CGNLFCGLHRYSDKHNCPY   62 (74)
T ss_dssp             CTTBCSS--SCCBCGGG-CEECT-TSCEECSSSCSTTTTTCCC
T ss_pred             cCCcChh--hCCccccc-CeecC-CCCEechhcCCCccCCCcc
Confidence            5678986  88764332 89999 9999999999999999985

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.62  E-value=7.5e-06  Score=55.24  Aligned_cols=46  Identities=15%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             cccccccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCccccCCCC
Q 023000           21 IDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDE   73 (289)
Q Consensus        21 ~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~~~~~   73 (289)
                      .+-.||+|+.|++.|.....+...       ..++++|.|++|++.|......
T Consensus        10 ~~~k~~~C~~C~k~F~~~~~l~~~-------H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A           10 TNRASFKCPVCSSTFTDLEANQLF-------DPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHHE-------ETTTTEEBCSSSCCBCEECTTC
T ss_pred             CCCCCccCCCCCchhccHHHhHhh-------cCCCCCEECCCCCCccccCccc
Confidence            345799999999999654322222       2345789999999999865444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.61  E-value=2.7e-05  Score=43.58  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=23.4

Q ss_pred             cccccccCcccCChhhHHHH-HHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEH-VERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H-~~~hh~  284 (289)
                      ||.|+.|++.|.....|..| +++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            89999999999999999999 667654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.56  E-value=3e-05  Score=42.93  Aligned_cols=25  Identities=32%  Similarity=0.547  Sum_probs=15.6

Q ss_pred             ccccc--ccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCP--KCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~--~C~k~F~~~~~L~~H~~~hh  283 (289)
                      ||.|+  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            56666  66666666666666665554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.55  E-value=4.7e-06  Score=48.17  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=25.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ||.|++|++.|...++|..|+++|++..
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~k   29 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVV   29 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCC
Confidence            8999999999999999999999887654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.53  E-value=4.3e-05  Score=42.24  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=24.7

Q ss_pred             CccccC--ccCcccCChHHHHHHHHhhcCC
Q 023000          221 GTELCP--QCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       221 kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      +||.|.  .|++.|...+.|..|++ +|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~-~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKK-IHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHG-GGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHH-HhCC
Confidence            489999  99999999999999998 8864

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.43  E-value=7.9e-05  Score=48.42  Aligned_cols=27  Identities=26%  Similarity=0.613  Sum_probs=24.5

Q ss_pred             cccccccCcccCChhhHHHHHH-hhcCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVE-RDHGG  285 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~-~hh~g  285 (289)
                      ||.|++|++.|.....|.+|++ +|++.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~   39 (54)
T 2eps_A           12 PYICQSCGKGFSRPDHLNGHIKQVHTSE   39 (54)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            9999999999999999999997 67654

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.42  E-value=6.4e-05  Score=51.30  Aligned_cols=44  Identities=25%  Similarity=0.606  Sum_probs=34.4

Q ss_pred             cccCCCCCCCCcceeeecc--cccCCcccccccccCcCCCCCCCCCCCC
Q 023000           96 TKKRKCPVRGCKEILVFSN--TIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        96 ~~~~~C~~~~ck~~~~~~~--~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      ...++|..  |++.+....  .|+| .|+..||.+||+...|.|..--+
T Consensus        13 ~~~~rC~~--C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~C~fDyk   58 (67)
T 1x4w_A           13 KSRRRCFQ--CQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDCTFDHM   58 (67)
T ss_dssp             SCTTBCSS--SCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGTCSSCSS
T ss_pred             ccCCcchh--hCCeecccccCceEe-cCCCEehhccCCccccCCccccc
Confidence            35678886  887765422  2999 99999999999999999985333

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.40  E-value=1.1e-05  Score=58.86  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=29.8

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      +|++++        ||.|++|++.|....+|..|+++|++
T Consensus        19 ~H~~~k--------py~C~~C~k~F~~~~~L~~H~~~Ht~   50 (88)
T 1x6f_A           19 PRLQNS--------TYQCKHCDSKLQSTAELTSHLNIHNE   50 (88)
T ss_dssp             SCCCCS--------CEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             ccCCCC--------CCcCCCCCCEeCCHHHHHHHHHHhCC
Confidence            788888        99999999999999999999998864

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.21  E-value=9.4e-05  Score=50.88  Aligned_cols=42  Identities=17%  Similarity=0.392  Sum_probs=32.9

Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccc--ccCcccCChhhHHHHHHhhcCCC
Q 023000          237 TLIEHVEKIHDRSGNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       237 ~L~~H~~~~h~~~k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      .|..|+..+|.+++        +|.|+  .|++.|.....|..|+++|++..
T Consensus         5 ~~~~~~~~~~~~~~--------~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~   48 (73)
T 1f2i_G            5 PMNNLLNYVVPKMR--------PYACPVESCDRRFSRSDELTRHIRIHTGQK   48 (73)
T ss_dssp             ---CTTSCCCCCCC--------CEECSSTTBCCEESSHHHHHHHHHHHHCCC
T ss_pred             CccchhhccCCCCC--------ccCCcCCCCCCccCCHHHHHHHHHhhCCCC
Confidence            34455555778888        99997  59999999999999999988653

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.21  E-value=0.00014  Score=51.12  Aligned_cols=29  Identities=38%  Similarity=0.668  Sum_probs=25.5

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      ++||.|+.|++.|.. ..|..|++ +|++++
T Consensus        41 ~~~~~C~~C~~~~~~-~~l~~H~~-~c~~~~   69 (75)
T 2d9k_A           41 ARTELCGNCGRNVLV-KDLKTHPE-VCGREG   69 (75)
T ss_dssp             HCEEECSSSCCEEET-TGGGTHHH-HBTTBS
T ss_pred             CCceEcccCCCcCcH-HHHHHHHH-HccCCc
Confidence            389999999999885 88999998 998875

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.0017  Score=44.14  Aligned_cols=56  Identities=23%  Similarity=0.312  Sum_probs=44.5

Q ss_pred             CccCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc--ccCcccCChhhHHHHHHhhc
Q 023000          226 PQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP--KCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       226 ~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~--~C~k~F~~~~~L~~H~~~hh  283 (289)
                      ..|++.|.....|..|+...|.+.++.  .+..+|.|.  .|++.+.....|+.|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~--~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFK--HPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCC--CSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccC--CCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            469999999999999986478765411  122379996  79999999999999998765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=96.72  E-value=0.00052  Score=46.93  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=23.5

Q ss_pred             CCCccccCc--cCcccCChHHHHHHHHhhc
Q 023000          219 TGGTELCPQ--CGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       219 ~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h  246 (289)
                      +++||.|..  |++.|.....|.+|++ +|
T Consensus        44 ~~~~~~C~~~~C~k~f~~~~~l~~H~~-~H   72 (72)
T 2epa_A           44 GEKPFSCSWKGCERRFARSDELSRHRR-TH   72 (72)
T ss_dssp             SSCSEECCCTTCCCEESSHHHHHHHTT-TC
T ss_pred             CCCCccCCCCCCCcccCCHHHHHhHhh-cC
Confidence            448999965  9999999999999987 65

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.09  E-value=0.0046  Score=47.61  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=17.6

Q ss_pred             CCCccccCccCcccCChHHHHHHHH
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      |++||.|..|++.|.+...|..|++
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCcceEcccCcchhCCHHHHHHHHh
Confidence            5567777777777777777777765

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.02  E-value=0.036  Score=34.75  Aligned_cols=23  Identities=35%  Similarity=0.847  Sum_probs=15.0

Q ss_pred             CccccCccCcccCChHHHHHHHH
Q 023000          221 GTELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      .+|.|+.|++.|.....|+.||.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            45666666666666666666654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=93.92  E-value=0.052  Score=41.87  Aligned_cols=60  Identities=22%  Similarity=0.435  Sum_probs=44.5

Q ss_pred             CccccCccCcccCChHHHHHHHH-hhcCC-----------CCC------------CCCCCCCcccccccCcccCChhhHH
Q 023000          221 GTELCPQCGARFSSVTTLIEHVE-KIHDR-----------SGN------------QARPKVTVDVCPKCSQGFCDPVALV  276 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~-~~h~~-----------~k~------------~~~~~~~p~~C~~C~k~F~~~~~L~  276 (289)
                      +++.|..|+..|.....+..|.. +.|..           +.+            ....+...|.|.+|.+.|.....|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            67999999999999999999972 13311           000            0112355789999999999999999


Q ss_pred             HHHH
Q 023000          277 EHVE  280 (289)
Q Consensus       277 ~H~~  280 (289)
                      .|..
T Consensus       111 ~H~~  114 (127)
T 1zu1_A          111 SHYI  114 (127)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9974

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.59  E-value=0.019  Score=44.14  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=21.8

Q ss_pred             cccccccCcccCChhhHHHHHHh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVER  281 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~  281 (289)
                      ||.|..|++.|.+..+|..|+++
T Consensus        50 pfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           50 LHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             ceEcccCcchhCCHHHHHHHHhh
Confidence            89999999999999999999864

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.34  E-value=0.11  Score=32.57  Aligned_cols=25  Identities=28%  Similarity=0.491  Sum_probs=22.6

Q ss_pred             CcccccccCcccCChhhHHHHHHhh
Q 023000          258 TVDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       258 ~p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      .+|.|+.|+..|.....|++||+.-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            3799999999999999999999743

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=91.85  E-value=0.36  Score=33.15  Aligned_cols=56  Identities=16%  Similarity=0.319  Sum_probs=36.8

Q ss_pred             CcccccccC-CccCcccccCCCccccccCCCCCCCcceeecCCCCCCccccCCCCCCccccccccccCCC
Q 023000           20 QIDFLPFTC-DCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVNVDCD   88 (289)
Q Consensus        20 ~~dfLPf~C-~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~~~~~~~~~~~~~H~~~~c~   88 (289)
                      .-.|.|..| +.|+..+...  .++.|.-...   +.+...|+.|+..|.       ...|+.|. ..|.
T Consensus        11 ~C~~~~v~C~~~C~~~v~r~--~l~~H~~~~C---~~r~v~C~~C~~~~~-------~~~l~~H~-~~Cp   67 (76)
T 2yuc_A           11 TCSFNVIPCPNRCPMKLSRR--DLPAHLQHDC---PKRRLKCEFCGCDFS-------GEAYESHE-GMCP   67 (76)
T ss_dssp             CCCCSCCBCTTCCSCBCCSS--SSTTTTTTSC---TTSCCCCSSSCCCCC-------HHHHHHTT-TSCT
T ss_pred             HCCCcccCCCccccHHhhHh--HHHhhCHhhC---CCcceECCCCCCccC-------HHHHHHHH-hHCC
Confidence            335899999 6899998554  3556631111   235578999999884       34567786 3454

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=87.55  E-value=0.38  Score=28.04  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=16.4

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      .|.||+|.+.|.....|..|-...|
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            3667777777777777777765444

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=85.79  E-value=0.88  Score=25.91  Aligned_cols=26  Identities=31%  Similarity=0.671  Sum_probs=20.3

Q ss_pred             CccccCccCcccCChHHHHHHHHhhc
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h  246 (289)
                      ....|..|.+.++...+|+.|++-.|
T Consensus         8 ikqhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A            8 IKQHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34578888888888888888887444

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=83.86  E-value=0.55  Score=31.03  Aligned_cols=26  Identities=31%  Similarity=0.646  Sum_probs=21.9

Q ss_pred             cccCCccccccccc---CcCCCCCCCCCC
Q 023000          115 TIKCRDCTVDHCLK---HRFAPDHSCPGP  140 (289)
Q Consensus       115 ~~~C~~C~~~fc~~---hr~~~~h~C~~~  140 (289)
                      .|.|+.|+..||+.   --++.-|+|+.|
T Consensus        30 ~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC   58 (59)
T 1z60_A           30 VYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             cEECCccCcCcccchhHHHHhhccCCcCC
Confidence            48999999999865   677888999876

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=83.28  E-value=0.97  Score=26.30  Aligned_cols=28  Identities=36%  Similarity=0.708  Sum_probs=24.6

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      .|.|+.|-+.|.....|..|....|..+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            4999999999999999999988677643

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=83.24  E-value=0.77  Score=28.61  Aligned_cols=33  Identities=24%  Similarity=0.582  Sum_probs=20.8

Q ss_pred             cccCCccCcccccCCCccccccCCCCCCCcceeecCCCCCCcccc
Q 023000           25 PFTCDCCHKVFCLDHRSYNQHQCPKAERHDVTVVICPLCAKGVRL   69 (289)
Q Consensus        25 Pf~C~~C~k~Fc~~h~~~~~H~c~~~~~~~~~~~~Cp~C~k~~~~   69 (289)
                      -|.|-.||+.|..+--.    .  -++      ..||.||-.+-.
T Consensus         3 iY~C~rCg~~fs~~el~----~--lP~------IrCpyCGyrii~   35 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQLK----V--LPG------VRCPYCGYKIIF   35 (48)
T ss_dssp             --CCCCTTTTCCCCCSC----C--CSS------SCCTTTCCSCEE
T ss_pred             EEEeeccCCCccHHHHh----h--CCC------cccCccCcEEEE
Confidence            38899999999555211    0  111      579999987743

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=82.88  E-value=0.73  Score=36.81  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=42.3

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      ++..|+.|+..+ ....|..|+. ..-..+        +..|+.|+..|. ...|..|..++.|+-.
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~-~~C~~r--------~~~C~~C~~~~~-~~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHIL-KDCPRR--------QVSCDNCAASMA-FEDKEIHDQNCPLALE  164 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHH-HTCTTC--------EEECTTTCCEEE-GGGHHHHHTTCCC---
T ss_pred             eeeECCCCChHH-HHHHHHHHhh-hhCCCC--------CeECCCCCCccC-HHHHHhHHHhCcChhh
Confidence            578899999988 4567999976 555666        788999999876 4668999977766543

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=80.55  E-value=1.6  Score=29.14  Aligned_cols=16  Identities=38%  Similarity=0.779  Sum_probs=10.1

Q ss_pred             cccCCcccccccccCc
Q 023000          115 TIKCRDCTVDHCLKHR  130 (289)
Q Consensus       115 ~~~C~~C~~~fc~~hr  130 (289)
                      +++|++||...-.|-|
T Consensus        38 ~iRC~~CG~RILyK~R   53 (63)
T 3h0g_L           38 VIRCRECGHRVMYKMR   53 (63)
T ss_dssp             CCCCSSSCCCCCBCCC
T ss_pred             ceECCCCCcEEEEEec
Confidence            5667777766655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1wfea_	86	g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mous	4e-12

>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: AN1-type zinc finger protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (142), Expect = 4e-12
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 11 KHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAE 51
            CS   C  ++ +   C  C K FCL HR  + H C K E
Sbjct: 26 YSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLE 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.58
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1wfea_	86	AN1-type zinc finger protein 1 {Mouse (Mus musculu	99.14
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.0
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.97
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.95
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.9
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.89
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.89
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.89
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.87
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.85
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.84
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.83
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.8
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.79
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.68
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.67
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.67
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.66
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.65
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.6
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.6
d1wfea_	86	AN1-type zinc finger protein 1 {Mouse (Mus musculu	98.54
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.53
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.53
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.47
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.47
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.46
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.45
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.41
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.36
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.33
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.3
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.25
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.21
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.2
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.18
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.18
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.04
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.95
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.8
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.62
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	97.59
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.51
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.51
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	97.45
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	97.38
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.36
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	97.32
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.3
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	97.28
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.24
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.23
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.15
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	97.07
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.99
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	96.96
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.92
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	96.84
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.8
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.75
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	96.75
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.71
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.67
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.66
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.66
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.64
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.63
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.51
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.42
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.4
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.38
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.26
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.99
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.79
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.78
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.69
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.62
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.62
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.45
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.18
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.98
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.87
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.77
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.76
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.43
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.4
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.14
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.12
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.81
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.8
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.57
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.54
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.13
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	92.49
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.47
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.03
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.8
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	89.48
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	89.46
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	89.46
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	89.01
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	88.9
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	86.54
d1y0jb1	36	U-shaped transcription factor, different fingers {	85.88
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.59
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	83.47
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	82.22
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	81.93
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	81.1

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.1e-16  Score=102.07  Aligned_cols=53  Identities=25%  Similarity=0.372  Sum_probs=50.8

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhh
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||||.| .||++|.....|..|++ +|++++        ||.|++||+.|...++|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~-~Ht~ek--------py~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMS-MHLGLR--------PYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHH-HHSCCC--------SEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhh-cccccc--------CCcCCCcCCEecCHHHHHHHHhcC
Confidence            589999 59999999999999998 999999        999999999999999999999876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.1e-12  Score=76.46  Aligned_cols=38  Identities=26%  Similarity=0.593  Sum_probs=34.9

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPK  264 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~~  264 (289)
                      .+|||.|.+||++|.+.++|.+|++++|++++        ||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ek--------py~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSER--------PHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCC--------CCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCc--------CcCCcC
Confidence            45999999999999999999999875899999        999974

>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: AN1-type zinc finger protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.1e-11  Score=88.13  Aligned_cols=44  Identities=34%  Similarity=0.847  Sum_probs=39.9

Q ss_pred             cCcCCcCCCCCcccccccCCccCcccccCCCccccccCCCCCCC
Q 023000           10 GKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERH   53 (289)
Q Consensus        10 g~~C~~~~C~~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~~   53 (289)
                      ...|++++|+++|||||.|+.|++.||.+|+.++.|.|.+....
T Consensus        25 ~~~Cs~~~C~~~~~lp~~C~~C~~~FC~~Hr~~e~H~C~~~~~~   68 (86)
T d1wfea_          25 SYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVA   68 (86)
T ss_dssp             CEECCSTTCCCEESSCEECTTTCCEECGGGCSTGGGTCSSSSCC
T ss_pred             cCcCCCCCCCCcccCcccchhhCcchhhccCCccCCCCCCCCcc
Confidence            34599999999999999999999999999999999999877543

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3e-11  Score=72.87  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             HHHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          240 EHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       240 ~H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +|++ +|++++        ||.|++||++|...++|.+|+++|+|+
T Consensus         2 rH~~-~Ht~ek--------py~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEW-QQRERR--------RYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCS-CCCCSC--------SSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCc-ccCCCC--------CEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3566 788888        888888888888888888888887763

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-10  Score=67.34  Aligned_cols=32  Identities=28%  Similarity=0.517  Sum_probs=22.5

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      +|+|++        ||+|.+||++|.+.++|+.|+++|++
T Consensus         1 IHTgek--------py~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           1 IHSGEK--------PYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTTCC--------CEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CcCCCC--------CeeCCCCCCEeCchHHhHhhccccCC
Confidence            466666        77777777777777777777777665

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.5e-10  Score=68.85  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=27.9

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +|+|++        ||+|.+||++|.+.++|..|+++|++.
T Consensus         2 ~HTgek--------Py~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEK--------PYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCC--------CEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCC--------CEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            788888        888888888888888888888888754

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=3.6e-10  Score=66.39  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=13.9

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||+|++|++.|.++++|.+|+++|+.
T Consensus         7 Py~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           7 PFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             cccCCCCCCcccChHHHHHHccccCC
Confidence            55555555555555555555555443

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.89  E-value=4.7e-10  Score=63.17  Aligned_cols=29  Identities=21%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|++||++|.+.++|.+|++ +|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r-~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccC-cccCCC
Confidence            46666666666666666666666 666664

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=2.3e-10  Score=68.49  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             HHHhhcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhc
Q 023000          241 HVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       241 H~~~~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      |.| +|+||+        ||+|++|++.|.++++|.+|+++|.
T Consensus         2 h~R-~HTgeK--------Py~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STR-GSTGIK--------PFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSS-TTCCSS--------SBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCC-ccCCcc--------CeEeCCCCCEecCHHHHHHHHhcCc
Confidence            456 888888        8999999999999999999988774

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.4e-10  Score=67.18  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=29.2

Q ss_pred             hcCCCCCCCCCCCCcccccccCcccCChhhHHHHHHhhcCCC
Q 023000          245 IHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       245 ~h~~~k~~~~~~~~p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      +|+||+        ||+|++|++.|+++++|.+|++.+|++.
T Consensus         2 ~HTgek--------P~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           2 THSGEK--------PYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCSCCC--------SEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             ccCCCC--------CEeCCCCcccccchHHHHHHcccccCCC
Confidence            788888        9999999999999999999987777654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.1e-10  Score=64.51  Aligned_cols=31  Identities=26%  Similarity=0.536  Sum_probs=29.0

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +++|||+|.+||++|.+.+.|..|++ +|+||
T Consensus         3 Tgekpy~C~~Cgk~F~~~~~L~~H~r-~HtgE   33 (33)
T d1x6ea1           3 SGEKPYGCVECGKAFSRSSILVQHQR-VHTGE   33 (33)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHH-GGGCS
T ss_pred             CCCCCeeCCCCCCEeCchHHhHhhcc-ccCCC
Confidence            37799999999999999999999999 99986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6.7e-10  Score=62.41  Aligned_cols=29  Identities=28%  Similarity=0.602  Sum_probs=17.2

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      |||.|++||++|.++++|.+|++ +|+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r-~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIK-THQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHH-GGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcC-ccCCcC
Confidence            35666666666666666666655 666553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=4.8e-10  Score=62.43  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=15.9

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||+|++|+++|.++++|.+|+++|+|
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCcCEecccccccccCCCccC
Confidence            66666666666666666666666553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=6.5e-10  Score=61.87  Aligned_cols=28  Identities=25%  Similarity=0.403  Sum_probs=26.7

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      ||||+|++|+++|.++++|.+|++ +|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r-~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIR-THTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHC
T ss_pred             CcCccCCCCcCEecccccccccCC-CccC
Confidence            699999999999999999999999 9986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=1.7e-09  Score=63.50  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +|||||+|++|++.|.+.++|.+|++ +|+.+.
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r-~Ht~~~   34 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLK-VHTDTL   34 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHG-GGTSCC
T ss_pred             CCCccccCCCCCCcccChHHHHHHcc-ccCCcC
Confidence            47899999999999999999999999 998753

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.8e-09  Score=64.88  Aligned_cols=32  Identities=25%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             CCCCCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          217 SGTGGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       217 ~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      .++++||.|++||++|.+.++|.+|++ +|+||
T Consensus         7 Ht~ekpy~C~~CgK~F~~~s~L~~H~r-~HtGE   38 (38)
T d2cota2           7 QRERRRYKCDECGKSFSHSSDLSKHRR-THTGE   38 (38)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHT-TTCCS
T ss_pred             cCCCCCEecCCCCceeeCHHHHHHhCc-cCCCC
Confidence            347799999999999999999999999 99986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.68  E-value=4.5e-09  Score=59.00  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=25.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||+|++|++.|.++++|.+|+++|+|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            999999999999999999999999874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.2e-09  Score=57.60  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=14.5

Q ss_pred             cccccccCcccCChhhHHHHHHhh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||+|.+|||.|.+.++|+.|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            566666666666666666666555

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=7.1e-09  Score=61.34  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=29.2

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||+||+|.+||++|.+.+.|..|++ +|.++.
T Consensus         4 TgekPy~C~~C~k~F~~~~~L~~H~r-~H~~~~   35 (36)
T d1x6ha2           4 TGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPN   35 (36)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHH-HTTCSS
T ss_pred             CCCCCEECCCCCCCcCCHhHHHHhCc-ccCCCC
Confidence            47799999999999999999999999 998753

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7e-09  Score=58.12  Aligned_cols=27  Identities=22%  Similarity=0.548  Sum_probs=25.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|++||+.|.++++|.+|+++|++.
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            999999999999999999999999874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.4e-09  Score=57.05  Aligned_cols=26  Identities=38%  Similarity=0.687  Sum_probs=24.6

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      |||+|.+|||+|.+.++|.+|+| +|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqr-iHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQR-IHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH-HHH
T ss_pred             CCccCCCCcCeeccCcccccCcc-CCC
Confidence            69999999999999999999998 884

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=2.1e-08  Score=59.63  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=28.2

Q ss_pred             CCCCCccccCccCcccCChHHHHHHHHhhcCC
Q 023000          217 SGTGGTELCPQCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       217 ~~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      .+|||||+|++|+++|.+.++|.+|++ +|.+
T Consensus         6 HTgeKPy~C~~C~k~F~~~~~L~~H~r-~H~~   36 (37)
T d1p7aa_           6 STGIKPFQCPDCDRSFSRSDHLALHRK-RHML   36 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHG-GGTC
T ss_pred             cCCccCeEeCCCCCEecCHHHHHHHHh-cCcC
Confidence            457899999999999999999999998 8874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.5e-08  Score=59.82  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             CCCCccccCccCcccCChHHHHHHHHhhcCC
Q 023000          218 GTGGTELCPQCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       218 ~~~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      +||+||.|++|+++|.+.++|.+|+++.|++
T Consensus         4 TgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           4 SGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4789999999999999999999998745654

>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: AN1-type zinc finger protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=2.3e-08  Score=70.69  Aligned_cols=41  Identities=32%  Similarity=0.899  Sum_probs=37.4

Q ss_pred             ccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCC
Q 023000           97 KKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPG  139 (289)
Q Consensus        97 ~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~  139 (289)
                      +.+.|++.+|++..+.  ||+|+.|++.||++||++.+|.|..
T Consensus        24 ~~~~Cs~~~C~~~~~l--p~~C~~C~~~FC~~Hr~~e~H~C~~   64 (86)
T d1wfea_          24 KSYSCSFKGCTDVELV--AVICPYCEKNFCLRHRHQSDHDCEK   64 (86)
T ss_dssp             CCEECCSTTCCCEESS--CEECTTTCCEECGGGCSTGGGTCSS
T ss_pred             ccCcCCCCCCCCcccC--cccchhhCcchhhccCCccCCCCCC
Confidence            5678999999988765  9999999999999999999999984

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.8e-08  Score=59.41  Aligned_cols=32  Identities=31%  Similarity=0.705  Sum_probs=30.1

Q ss_pred             cccCc--cCcccCChHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 023000          223 ELCPQ--CGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCP  263 (289)
Q Consensus       223 ~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k~~~~~~~~p~~C~  263 (289)
                      |.|+.  ||++|.+.++|++|++ +|+|++        ||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r-~Htgek--------py~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMK-LHSDTR--------DYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHH-HHHTSC--------CCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccC-eeCCCC--------CEeCC
Confidence            77876  9999999999999999 999999        99997

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.7e-08  Score=56.03  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=14.2

Q ss_pred             cccccc--cCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPK--CSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~--C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||+|++  |+++|.+.++|.+|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            555554  55555555555555555544

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.6e-08  Score=55.58  Aligned_cols=29  Identities=28%  Similarity=0.555  Sum_probs=18.0

Q ss_pred             CccccC--ccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCP--QCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~--~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +||.|+  .||++|.+.++|.+|++ +|+||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r-~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcC-cccccC
Confidence            466664  46666666666666666 666654

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.9e-08  Score=55.98  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=14.8

Q ss_pred             cccccc--cCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPK--CSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~--C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||.|++  |+++|.+.++|.+|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            555544  55555555555555555544

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.7e-08  Score=55.03  Aligned_cols=28  Identities=21%  Similarity=0.464  Sum_probs=26.6

Q ss_pred             CccccCc--cCcccCChHHHHHHHHhhcCCC
Q 023000          221 GTELCPQ--CGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       221 kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      |||.|+.  ||++|.+.++|.+|++ +|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLR-SHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHH-HTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcC-cCcCC
Confidence            6999988  9999999999999999 99986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.6e-08  Score=65.25  Aligned_cols=27  Identities=30%  Similarity=0.541  Sum_probs=25.0

Q ss_pred             CCCccccCccCcccCChHHHHHHHHhhc
Q 023000          219 TGGTELCPQCGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       219 ~~kp~~C~~Cgk~F~~~~~L~~H~~~~h  246 (289)
                      +++||.|++||++|...+.|.+|++ +|
T Consensus        27 ~ekpy~C~~C~k~F~~~~~L~~H~r-~H   53 (53)
T d2csha1          27 GLRPYGCGVCGKKFKMKHHLVGHMK-IH   53 (53)
T ss_dssp             CCCSEECTTTSCEESSSHHHHHHHT-TT
T ss_pred             cccCCcCCCcCCEecCHHHHHHHHh-cC
Confidence            4599999999999999999999998 76

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.2e-08  Score=54.92  Aligned_cols=28  Identities=39%  Similarity=0.574  Sum_probs=26.3

Q ss_pred             CccccCc--cCcccCChHHHHHHHHhhcCCC
Q 023000          221 GTELCPQ--CGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       221 kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      |||.|+.  ||++|.+.++|.+|++ +|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVR-IHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH-HHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCcccc-ccCCC
Confidence            6999987  9999999999999999 99986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=5.4e-08  Score=60.92  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=16.1

Q ss_pred             cccccc--cCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPK--CSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~--C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||+|.+  |++.|.++++|..|+++|++
T Consensus        18 py~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_          18 TFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             EEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             CeECCcCCCCccccCchHHHhhcccccC
Confidence            666654  66666666666666666554

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=1.8e-07  Score=53.39  Aligned_cols=27  Identities=19%  Similarity=0.443  Sum_probs=17.5

Q ss_pred             cccccc--cCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCPK--CSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~~--C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|++  |++.|++.++|.+|+++|+..
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            666655  666666666666666666543

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=8.2e-08  Score=60.07  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=29.4

Q ss_pred             CCCCccccCc--cCcccCChHHHHHHHHhhcCCCC
Q 023000          218 GTGGTELCPQ--CGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       218 ~~~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      .+++||.|..  |+++|.+.++|..|++ +|+|++
T Consensus        14 ~gekpy~C~~~~C~k~F~~~~~L~~H~r-~Htgek   47 (47)
T d1ncsa_          14 MPDKTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             cCCCCeECCcCCCCccccCchHHHhhcc-cccCCC
Confidence            3679999977  9999999999999999 999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.6e-07  Score=52.28  Aligned_cols=26  Identities=27%  Similarity=0.649  Sum_probs=17.6

Q ss_pred             cccccc--cCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPK--CSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~--C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||+|++  |+++|.+.++|.+|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            667755  77777777777777766654

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=4.4e-07  Score=51.69  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=26.4

Q ss_pred             CCccccCc--cCcccCChHHHHHHHHhhcCCC
Q 023000          220 GGTELCPQ--CGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       220 ~kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      |+||.|+.  ||++|.+.++|.+|++ +|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r-~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhh-hccCC
Confidence            58999987  9999999999999999 99853

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.7e-07  Score=51.72  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=24.6

Q ss_pred             ccccc--ccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCP--KCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~--~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|+  .|+++|.+.++|.+|+++|++.
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            89995  6999999999999999998764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4.2e-07  Score=54.29  Aligned_cols=28  Identities=25%  Similarity=0.589  Sum_probs=24.7

Q ss_pred             cccccccCcccCChhhHHHHHH-hhcCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVE-RDHGGT  286 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~-~hh~g~  286 (289)
                      ||+|.+||+.|.+.++|.+|++ +|++.-
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r~~Ht~ek   33 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIKQVHTSER   33 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCCCC
T ss_pred             CccCCCCCCCcCChHHhhccCcCccCCCc
Confidence            9999999999999999999987 466543

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3e-07  Score=50.65  Aligned_cols=25  Identities=28%  Similarity=0.588  Sum_probs=18.7

Q ss_pred             cccccc--cCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPK--CSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~--C~k~F~~~~~L~~H~~~hh  283 (289)
                      ||.|++  |||+|.+.++|.+|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            777766  7777777777777777764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=2.6e-07  Score=51.43  Aligned_cols=27  Identities=37%  Similarity=0.733  Sum_probs=25.1

Q ss_pred             CccccCc--cCcccCChHHHHHHHHhhcCC
Q 023000          221 GTELCPQ--CGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       221 kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      |||.|++  ||++|.+.++|.+|++ +|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r-~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIR-IHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTH-HHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcC-ccCC
Confidence            6999977  9999999999999999 9986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=6.3e-07  Score=46.24  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=15.0

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      |++|++|++.|+++..|..|||.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            4556666666666666666665554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.7e-07  Score=49.20  Aligned_cols=26  Identities=31%  Similarity=0.676  Sum_probs=24.2

Q ss_pred             CccccCc--cCcccCChHHHHHHHHhhcC
Q 023000          221 GTELCPQ--CGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       221 kp~~C~~--Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      |||.|+.  ||++|.+.++|.+|++ +|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r-~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHIL-THA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHH-HHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHh-hcc
Confidence            6999987  9999999999999999 885

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.6e-06  Score=43.88  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=24.3

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      |++|++|++.|+++..|+.|+| .|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr-~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMR-CHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGG-GCCC
T ss_pred             CCccchhhhHhcchhHHHHHhh-ccCC
Confidence            6789999999999999999999 8885

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=4.3e-06  Score=44.49  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=11.8

Q ss_pred             cccccccCcccCChhhHHHHHHhh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||.|.+||+.|.++....+|.++|
T Consensus         3 Pf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           3 PFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGG
T ss_pred             Ccccchhhhhhhcchhhhhhhhhc
Confidence            455555555555555555554443

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=5.1e-06  Score=44.19  Aligned_cols=26  Identities=27%  Similarity=0.543  Sum_probs=24.1

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhc
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h  246 (289)
                      |+||.|.+||+.|+.+....+|.+ +|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~k-iH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTK-IH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHG-GG
T ss_pred             CCCcccchhhhhhhcchhhhhhhh-hc
Confidence            589999999999999999999987 66

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=9.5e-06  Score=43.78  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||.|++|+.+|.+++-+..|++.|-|+
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CcccchHHHHhhccccceEeeecccCc
Confidence            777777777777777777777666554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.6e-05  Score=42.85  Aligned_cols=30  Identities=37%  Similarity=0.584  Sum_probs=27.3

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      |+||.|++|+.+|.++..+.-|+| .|.|..
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvr-shdg~v   30 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVR-SHDGSV   30 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHH-HHSCCC
T ss_pred             CCCcccchHHHHhhccccceEeee-cccCcc
Confidence            589999999999999999999999 998753

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.7e-05  Score=43.75  Aligned_cols=29  Identities=28%  Similarity=0.399  Sum_probs=26.8

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +...|.+||+.|....+|.+|.. .|++|+
T Consensus         4 k~~~ce~cgk~frdvyhlnrhkl-shs~ek   32 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKL-SHSGEK   32 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG-GSCSCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhc-ccCCCC
Confidence            56789999999999999999977 999999

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.6e-05  Score=46.33  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=24.9

Q ss_pred             ccccc--cCcccCChhhHHHHHHhhcCCCC
Q 023000          260 DVCPK--CSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       260 ~~C~~--C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      |.|++  |++.|.++.+|++|+++|++.-+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp   31 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD   31 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC
Confidence            77876  99999999999999999987654

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3e-05  Score=40.62  Aligned_cols=26  Identities=27%  Similarity=0.666  Sum_probs=17.2

Q ss_pred             cccCccCcccCChHHHHHHHHhhcCCC
Q 023000          223 ELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +.|.+||+.|..++.|++|+. +|+||
T Consensus         3 hvc~ecgkaf~essklkrh~l-vhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQL-VHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGG-GTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhh-cccCC
Confidence            456667777777777777766 66654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.51  E-value=2e-05  Score=42.84  Aligned_cols=28  Identities=25%  Similarity=0.533  Sum_probs=22.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGT  286 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~  286 (289)
                      ||.|.+|++.|++++.|.+|+...|+|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCc
Confidence            6888888888888888888887777764

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.45  E-value=6.7e-05  Score=48.98  Aligned_cols=44  Identities=27%  Similarity=0.683  Sum_probs=35.3

Q ss_pred             CcccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCCC
Q 023000           95 VTKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        95 ~~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      +.+..+|..  |++++... .|+|. |+..||.+||.+..|.|..--+
T Consensus        12 ~~k~~RC~~--C~KKl~l~-~~~Cr-Cg~~FC~~HR~pe~H~CtfDyK   55 (64)
T d1wfha_          12 PQRPNRCTV--CRKRVGLT-GFMCR-CGTTFCGSHRYPEVHGCTFDFK   55 (64)
T ss_dssp             CSSCCCCTT--TCCCCCTT-CEECS-SSCEECTTTCSTTTTTCCCCCS
T ss_pred             CCCCCcChh--hCCCccce-eeecc-CCCEehhhcCCCcCcCCCCcch
Confidence            346778876  87776544 79995 9999999999999999996444

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=6.9e-05  Score=50.40  Aligned_cols=43  Identities=30%  Similarity=0.728  Sum_probs=34.0

Q ss_pred             cccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCCC
Q 023000           96 TKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        96 ~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      .+.++|.+  |++++... +|+| .||..||.+||....|.|..--+
T Consensus        23 ~k~~RC~~--C~KKl~l~-~~~C-rCg~~FC~~HR~pe~H~CtfDyK   65 (74)
T d1wfla_          23 PKKNRCFM--CRKKVGLT-GFDC-RCGNLFCGLHRYSDKHNCPYDYK   65 (74)
T ss_dssp             SCTTBCSS--SCCBCGGG-CEEC-TTSCEECSSSCSTTTTTCCCCGG
T ss_pred             CCCCcChh--hCCcccce-eeEc-cCCCEehhhcCCCcCcCCCCccc
Confidence            35678876  77665443 8999 59999999999999999985433

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4.5e-05  Score=41.05  Aligned_cols=26  Identities=38%  Similarity=0.787  Sum_probs=20.3

Q ss_pred             cccccc--cCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPK--CSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~--C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||.|.+  |++++..+++|++|++.+||
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            788865  88888888888888877664

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=0.0001  Score=49.61  Aligned_cols=43  Identities=26%  Similarity=0.634  Sum_probs=34.2

Q ss_pred             cccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCCC
Q 023000           96 TKKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        96 ~~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      .+..+|.+  |++++.+. .|.| .|+..||.+||++..|+|..--+
T Consensus        23 ~kk~RC~~--C~KKl~l~-~~~C-rCg~~FC~~HR~pe~H~C~fDyK   65 (74)
T d1wfpa_          23 STATRCLS--CNKKVGVT-GFKC-RCGSTFCGTHRYPESHECQFDFK   65 (74)
T ss_dssp             CCCCBCSS--SCCBCTTT-CEEC-TTSCEECTTTCSTTTSCCCSCTT
T ss_pred             CCCCcChh--cCCccCCC-ceec-CCCChhhhccCCccCcCCCCcch
Confidence            35678876  77776443 7999 59999999999999999995443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=5.3e-05  Score=39.87  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=16.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||+|..|...-..+++|..|+|.|+|
T Consensus         3 pfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             cceeeecccccCCchheEEeeecccC
Confidence            66666666666666666666666554

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=7.6e-05  Score=50.19  Aligned_cols=40  Identities=30%  Similarity=0.809  Sum_probs=33.9

Q ss_pred             cCcCCcCCCC-CcccccccCCccCcccccCCCccccccCCCCCC
Q 023000           10 GKHCSLPDCK-QIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAER   52 (289)
Q Consensus        10 g~~C~~~~C~-~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~   52 (289)
                      -.+|.  .|+ .|.+++|+| .|+..||..|+..+.|.|.-...
T Consensus        25 ~~RC~--~C~KKl~l~~~~C-rCg~~FC~~HR~pe~H~CtfDyK   65 (74)
T d1wfla_          25 KNRCF--MCRKKVGLTGFDC-RCGNLFCGLHRYSDKHNCPYDYK   65 (74)
T ss_dssp             TTBCS--SSCCBCGGGCEEC-TTSCEECSSSCSTTTTTCCCCGG
T ss_pred             CCcCh--hhCCcccceeeEc-cCCCEehhhcCCCcCcCCCCccc
Confidence            34788  498 678899999 59999999999999999986554

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0001  Score=38.72  Aligned_cols=29  Identities=17%  Similarity=0.238  Sum_probs=26.8

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      ++||+|..|...-..++.|..|+| .|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr-~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLR-SHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHT-TCCSC
T ss_pred             CCcceeeecccccCCchheEEeee-cccCc
Confidence            489999999999999999999999 99874

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00015  Score=38.36  Aligned_cols=27  Identities=26%  Similarity=0.587  Sum_probs=21.5

Q ss_pred             cccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          223 ELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      |.|+.||..-..++.|..|+| .|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIR-sHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIR-THTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH-HTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHH-HhcCCC
Confidence            678888888888888888888 887764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00018  Score=37.10  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             ccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          224 LCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       224 ~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +|+.|.++|..+..|+.|-| .|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr-~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR-KHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH-HHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccc-cccCCC
Confidence            58888888888888888877 788764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00021  Score=37.96  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=15.0

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      +||+|+.|..+-..+++|+.|+...|.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            355566666555555566666553343

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00011  Score=50.75  Aligned_cols=43  Identities=28%  Similarity=0.692  Sum_probs=34.0

Q ss_pred             ccCCCCCCCCcceeeecccccCCcccccccccCcCCCCCCCCCCCC
Q 023000           97 KKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKK  142 (289)
Q Consensus        97 ~~~~C~~~~ck~~~~~~~~~~C~~C~~~fc~~hr~~~~h~C~~~~~  142 (289)
                      ...+|..  |++++....+|+|. |+..||.+||+...|.|..--+
T Consensus        24 ~~~RC~~--C~KKl~l~~~~~Cr-Cg~~FC~~HR~pe~H~CtfDyK   66 (85)
T d1wffa_          24 IMKHCFL--CGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYK   66 (85)
T ss_dssp             CCCBCSS--SCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCS
T ss_pred             cCCcChh--cCCeecCCcCeecC-CCCEehhhcCCCcCcCCCcchH
Confidence            3457875  77777554489995 9999999999999999986433

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.99  E-value=0.00018  Score=38.95  Aligned_cols=27  Identities=33%  Similarity=0.593  Sum_probs=24.8

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      ||.|.+|++.|++..-|.+|+++.|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            799999999999999999998877775

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.96  E-value=0.00028  Score=47.36  Aligned_cols=41  Identities=27%  Similarity=0.675  Sum_probs=33.6

Q ss_pred             cCcCCcCCCC-CcccccccCCccCcccccCCCccccccCCCCCCC
Q 023000           10 GKHCSLPDCK-QIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERH   53 (289)
Q Consensus        10 g~~C~~~~C~-~~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~~   53 (289)
                      ..+|.+  |+ .|.++.|+| .|++.||..|+..+.|.|.-....
T Consensus        25 k~RC~~--C~KKl~l~~~~C-rCg~~FC~~HR~pe~H~C~fDyK~   66 (74)
T d1wfpa_          25 ATRCLS--CNKKVGVTGFKC-RCGSTFCGTHRYPESHECQFDFKG   66 (74)
T ss_dssp             CCBCSS--SCCBCTTTCEEC-TTSCEECTTTCSTTTSCCCSCTTS
T ss_pred             CCcChh--cCCccCCCceec-CCCChhhhccCCccCcCCCCcchh
Confidence            467884  88 567777999 599999999999999999866544

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0002  Score=37.45  Aligned_cols=26  Identities=31%  Similarity=0.666  Sum_probs=23.4

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      .+.|..||+.|..++.|.+|+.+|++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccC
Confidence            46899999999999999999988775

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00067  Score=46.74  Aligned_cols=39  Identities=36%  Similarity=0.752  Sum_probs=32.7

Q ss_pred             CcCCcCCCCCcccc--cccCCccCcccccCCCccccccCCCCCC
Q 023000           11 KHCSLPDCKQIDFL--PFTCDCCHKVFCLDHRSYNQHQCPKAER   52 (289)
Q Consensus        11 ~~C~~~~C~~~dfL--Pf~C~~C~k~Fc~~h~~~~~H~c~~~~~   52 (289)
                      .+|.  .|+..--|  +|+|. |+..||..|+..+.|.|.-...
T Consensus        26 ~RC~--~C~KKl~l~~~~~Cr-Cg~~FC~~HR~pe~H~CtfDyK   66 (85)
T d1wffa_          26 KHCF--LCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYK   66 (85)
T ss_dssp             CBCS--SSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCS
T ss_pred             CcCh--hcCCeecCCcCeecC-CCCEehhhcCCCcCcCCCcchH
Confidence            5788  59876655  89995 9999999999999999976543

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00039  Score=40.38  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=14.6

Q ss_pred             CccccCccCcccCChHHHHHHH
Q 023000          221 GTELCPQCGARFSSVTTLIEHV  242 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~  242 (289)
                      |||+|..|+|+|-+..++.+|.
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhh
Confidence            6666666666666666666663

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.75  E-value=0.00055  Score=39.39  Aligned_cols=29  Identities=28%  Similarity=0.528  Sum_probs=21.2

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcCCCC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHDRSG  250 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~k  250 (289)
                      +.|+|.+|++.|.....|-.|++ .|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~-~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMN-VHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH-TTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHh-hhcchH
Confidence            56777777777777777777776 776554

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.75  E-value=0.00044  Score=44.96  Aligned_cols=42  Identities=26%  Similarity=0.710  Sum_probs=33.7

Q ss_pred             ccCcCCcCCCCC-cccccccCCccCcccccCCCccccccCCCCCCC
Q 023000            9 LGKHCSLPDCKQ-IDFLPFTCDCCHKVFCLDHRSYNQHQCPKAERH   53 (289)
Q Consensus         9 ~g~~C~~~~C~~-~dfLPf~C~~C~k~Fc~~h~~~~~H~c~~~~~~   53 (289)
                      .-..|.+  |+. |.+++|+|. |+..||..|+..+.|.|.-....
T Consensus        14 k~~RC~~--C~KKl~l~~~~Cr-Cg~~FC~~HR~pe~H~CtfDyK~   56 (64)
T d1wfha_          14 RPNRCTV--CRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKS   56 (64)
T ss_dssp             SCCCCTT--TCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSC
T ss_pred             CCCcChh--hCCCccceeeecc-CCCEehhhcCCCcCcCCCCcchh
Confidence            3347874  875 467799995 99999999999999999866544

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.71  E-value=0.00045  Score=34.97  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=15.8

Q ss_pred             ccccccCcccCChhhHHHHHHhh
Q 023000          260 DVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      |+|..|.+.|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            56667777777777777777655

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.67  E-value=0.00065  Score=39.08  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=25.7

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGTS  287 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~~  287 (289)
                      .|+|.+|++.|.+..+|-.||+.|.....
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             ccCCCCCCCccCCcccccchHhhhcchHH
Confidence            79999999999999999999988865443

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.66  E-value=0.00049  Score=36.19  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=16.5

Q ss_pred             ccccc--ccCcccCChhhHHHHHHhh
Q 023000          259 VDVCP--KCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C~--~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||+|+  -|+++|+.++-|.+|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            67774  3777777777777777655

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00066  Score=35.77  Aligned_cols=26  Identities=19%  Similarity=0.418  Sum_probs=24.2

Q ss_pred             ccccccCcccCChhhHHHHHHhhcCC
Q 023000          260 DVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      |.|+.||..-..++-|..|+|.|++.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            89999999999999999999998764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00069  Score=35.22  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      +||+|..|...-...+.|..|+| +|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~r-ihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLR-IHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH-HSC
T ss_pred             CCcccccccchhcchhhHhhhhh-ccc
Confidence            67888888888888888888877 764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00067  Score=36.34  Aligned_cols=26  Identities=23%  Similarity=0.534  Sum_probs=22.9

Q ss_pred             CccccCc--cCcccCChHHHHHHHHhhcC
Q 023000          221 GTELCPQ--CGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       221 kp~~C~~--Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      |||.|..  |++++...++|..|++ .+.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k-~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVK-TVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHH-HSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHH-hhC
Confidence            5899987  9999999999999998 543

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00063  Score=39.45  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             CCcccccccCcccCChhhHHHHH
Q 023000          257 VTVDVCPKCSQGFCDPVALVEHV  279 (289)
Q Consensus       257 ~~p~~C~~C~k~F~~~~~L~~H~  279 (289)
                      ++||.|.+|+|.|...+++.+|.
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHhh
Confidence            34999999999999999999997

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0008  Score=34.98  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=24.1

Q ss_pred             CcccccccCcccCChhhHHHHHHhhc
Q 023000          258 TVDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       258 ~p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      +||+|..|...-...++|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            49999999999999999999999874

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.40  E-value=0.0012  Score=33.42  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=22.1

Q ss_pred             cccCccCcccCChHHHHHHHHhhcC
Q 023000          223 ELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      |+|..|.++|..++.|.+|++ +|.
T Consensus         1 ykcglcersfveksalsrhqr-vhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQR-VHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG-GTC
T ss_pred             CcccchHHHHHHHHHHHHHHH-hhc
Confidence            789999999999999999998 774

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.0013  Score=33.80  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=23.2

Q ss_pred             cccccCcccCChhhHHHHHHhhcCC
Q 023000          261 VCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       261 ~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      +|+.|.+.|..+..|..|-|.|+|.
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            6999999999999999999998875

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.26  E-value=0.0014  Score=34.42  Aligned_cols=25  Identities=36%  Similarity=0.663  Sum_probs=22.3

Q ss_pred             CccccCc--cCcccCChHHHHHHHHhhc
Q 023000          221 GTELCPQ--CGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       221 kp~~C~~--Cgk~F~~~~~L~~H~~~~h  246 (289)
                      .||+|+.  |+++|+.++.|++|.. +|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhek-vh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEK-VH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHH-HH
T ss_pred             CCccCCccCccccccCHHHHhhhhh-cc
Confidence            4899975  9999999999999977 76

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0033  Score=33.21  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=24.9

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||+|+.|..+-..+++|..|+++-|+.
T Consensus         2 py~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             Cccccccccccccchhhhhhhhccccc
Confidence            999999999999999999999987764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0024  Score=34.95  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCCCCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGGTSR  288 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g~~~  288 (289)
                      ...|+.||+.|.....|.+|...|.+.-..
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            567999999999999999999777766543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0033  Score=32.45  Aligned_cols=22  Identities=32%  Similarity=0.609  Sum_probs=16.6

Q ss_pred             cccccccCcccCChhhHHHHHH
Q 023000          259 VDVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      ||+|..||+.+-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5777778887777777777763

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0019  Score=34.81  Aligned_cols=21  Identities=24%  Similarity=0.599  Sum_probs=10.4

Q ss_pred             ccccCc--cCcccCChHHHHHHH
Q 023000          222 TELCPQ--CGARFSSVTTLIEHV  242 (289)
Q Consensus       222 p~~C~~--Cgk~F~~~~~L~~H~  242 (289)
                      ||.|+.  |.|+|+..+.-..|+
T Consensus         2 PY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHH
T ss_pred             CccccCCChhhhhcchhhhhhhc
Confidence            455543  555555555555554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0027  Score=33.39  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=18.4

Q ss_pred             cccccccCcccCChhhHHHHHH
Q 023000          259 VDVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      ||.|..|.-.|..+.+|..||+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            6788888888888888888885

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0037  Score=32.93  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             cccccccCcccCChhhHHHHHHhhcCC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHGG  285 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~g  285 (289)
                      ||+|..|.---.++++|..|++.-|+.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CcccceecccccCcchHHHHHHHHccC
Confidence            777777776667777777777766653

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.45  E-value=0.0034  Score=33.06  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=13.4

Q ss_pred             ccccc--ccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCP--KCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~--~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      ||.|.  -|.|.|..-..|.+|..+|++
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            44442  355555555555555545443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0067  Score=31.77  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=17.2

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      .|.|..|...|.+.-.|+.||..|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            56677777777777777777755544

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.012  Score=30.82  Aligned_cols=29  Identities=21%  Similarity=0.295  Sum_probs=26.3

Q ss_pred             CCccccCccCcccCChHHHHHHHHhhcCCC
Q 023000          220 GGTELCPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       220 ~kp~~C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +..|.|..|...|.+.-.|..||- .|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmv-shtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMV-SHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeee-cccCC
Confidence            357999999999999999999998 99985

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0082  Score=31.47  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=21.2

Q ss_pred             ccccCccCcccCChHHHHHHHH
Q 023000          222 TELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      ||.|..|.-.|..+.+|..||.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            7999999999999999999987

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.012  Score=30.87  Aligned_cols=27  Identities=22%  Similarity=0.397  Sum_probs=24.0

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      +||+|..|.---.+.++|..|++..|.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            599999999999999999999985564

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.76  E-value=0.0081  Score=30.21  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=14.1

Q ss_pred             cccccccCcccCChhhHHHHHH
Q 023000          259 VDVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      ||+|..|...|.++..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666663

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.43  E-value=0.013  Score=30.14  Aligned_cols=22  Identities=32%  Similarity=0.679  Sum_probs=20.3

Q ss_pred             ccccCccCcccCChHHHHHHHH
Q 023000          222 TELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      ||+|..||+.+-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999999954

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.0065  Score=32.70  Aligned_cols=25  Identities=20%  Similarity=0.489  Sum_probs=22.1

Q ss_pred             cccccc--cCcccCChhhHHHHH-Hhhc
Q 023000          259 VDVCPK--CSQGFCDPVALVEHV-ERDH  283 (289)
Q Consensus       259 p~~C~~--C~k~F~~~~~L~~H~-~~hh  283 (289)
                      ||.|+.  |.|.|+..+.-..|+ |+|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCChhhhhcchhhhhhhcccccc
Confidence            899976  999999999999998 6664

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.016  Score=32.90  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=13.9

Q ss_pred             cccc--cccCcccCChhhHHHHHHhh
Q 023000          259 VDVC--PKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C--~~C~k~F~~~~~L~~H~~~h  282 (289)
                      ||.|  +-|+.+|.+...|..|...|
T Consensus         6 PF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           6 PFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             ceecCCCCccccccchHHHHHhhhhh
Confidence            5666  44666666666666665544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.12  E-value=0.017  Score=28.95  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             ccccCccCcccCChHHHHHHHH
Q 023000          222 TELCPQCGARFSSVTTLIEHVE  243 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~  243 (289)
                      ||+|..|...|.++..|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999976

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.81  E-value=0.018  Score=28.96  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=15.3

Q ss_pred             ccccccCcccCChhhHHHHHHhhc
Q 023000          260 DVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      |.|+.|-+.|.+++++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            556666666666666666665543

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.017  Score=29.92  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=19.2

Q ss_pred             cccccccCcccCChhhHHHHHHhhc
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      |.+|+.|...-+.+.+|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5677888887788888888887764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.025  Score=33.74  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=17.4

Q ss_pred             cccccccCcccCChhhHHHHHHhh
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~h  282 (289)
                      .|.|..|+|.|.....|+.|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            467777888888777777777443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.54  E-value=0.022  Score=29.87  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=24.9

Q ss_pred             CccccCc--cCcccCChHHHHHHHHhhcCCC
Q 023000          221 GTELCPQ--CGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       221 kp~~C~~--Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      +||.|..  |.+.|....+|.+|.. +|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~-thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSL-THTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHH-HHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhc-cccCC
Confidence            5899965  9999999999999988 89875

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.026  Score=29.09  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=14.2

Q ss_pred             ccccccCcccCChhhHHHHHHhhc
Q 023000          260 DVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       260 ~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      |+|+.|.....+++.|..|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            556666666666666666665443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.047  Score=30.90  Aligned_cols=28  Identities=36%  Similarity=0.711  Sum_probs=23.8

Q ss_pred             CCCcccc--CccCcccCChHHHHHHHHhhcC
Q 023000          219 TGGTELC--PQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       219 ~~kp~~C--~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      .+|||.|  +-|+.+|.....|..|.. .|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~-KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKH-KHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHH-HHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhh-hhe
Confidence            3699999  669999999999999966 564

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.045  Score=28.15  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.2

Q ss_pred             ccccCccCcccCChHHHHHHHHhhc
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h  246 (289)
                      .|+|+.|+....+++.|..|++..|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4899999999999999999998545

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.03  E-value=0.056  Score=27.13  Aligned_cols=24  Identities=33%  Similarity=0.634  Sum_probs=21.4

Q ss_pred             cccCccCcccCChHHHHHHHHhhc
Q 023000          223 ELCPQCGARFSSVTTLIEHVEKIH  246 (289)
Q Consensus       223 ~~C~~Cgk~F~~~~~L~~H~~~~h  246 (289)
                      |.|+.|-+.|.++.++..|+..+|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            789999999999999999987444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.089  Score=27.09  Aligned_cols=25  Identities=36%  Similarity=0.507  Sum_probs=22.7

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      |.+|+.|.++-+.+..|..|.| +|-
T Consensus         2 pekc~ecsyscsskaalrvh~r-ihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHER-IHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHG-GGC
T ss_pred             CccCcccccccCcHHHHHHhhc-ccc
Confidence            6789999999999999999988 874

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.1  Score=28.73  Aligned_cols=19  Identities=32%  Similarity=0.433  Sum_probs=10.8

Q ss_pred             CcccCChhhHHHHHHhhcC
Q 023000          266 SQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       266 ~k~F~~~~~L~~H~~~hh~  284 (289)
                      ++.|.....|..|||.|++
T Consensus        14 ~~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHC
T ss_pred             CCcchhHHHHHHHHhhcCC
Confidence            3445556666666665554

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.46  E-value=0.14  Score=30.28  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             CCCcccccccCcccCChhhHHHHHHhhc
Q 023000          256 KVTVDVCPKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       256 ~~~p~~C~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      +++|-.|++|+....++.+|++|+...|
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            3447778888777777788887776554

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.092  Score=28.70  Aligned_cols=26  Identities=27%  Similarity=0.579  Sum_probs=19.8

Q ss_pred             cccccccCcccCChhhHHHHHHhhcC
Q 023000          259 VDVCPKCSQGFCDPVALVEHVERDHG  284 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~~hh~  284 (289)
                      .|.|..|||.|.++..+.+|...-.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            57888888888888888888755443

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.01  E-value=0.088  Score=33.07  Aligned_cols=36  Identities=31%  Similarity=0.609  Sum_probs=26.0

Q ss_pred             CCcceeeecccccCCccccccccc---CcCCCCCCCCCC
Q 023000          105 GCKEILVFSNTIKCRDCTVDHCLK---HRFAPDHSCPGP  140 (289)
Q Consensus       105 ~ck~~~~~~~~~~C~~C~~~fc~~---hr~~~~h~C~~~  140 (289)
                      +|...+.....|+|+.|++.||+.   --++.-|+|+.|
T Consensus        20 gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          20 GCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             TTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCcCCCCceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            344444333369999999999865   677888999865

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.1  Score=28.77  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=19.8

Q ss_pred             cCccCcccCChHHHHHHHHhhcCCC
Q 023000          225 CPQCGARFSSVTTLIEHVEKIHDRS  249 (289)
Q Consensus       225 C~~Cgk~F~~~~~L~~H~~~~h~~~  249 (289)
                      |+-=++.|.....|..||| +|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R-~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMR-RHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTH-HHHCC
T ss_pred             CCCCCCcchhHHHHHHHHh-hcCCC
Confidence            4444567999999999999 99986

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.22  Score=29.48  Aligned_cols=26  Identities=31%  Similarity=0.589  Sum_probs=22.7

Q ss_pred             CccccCccCcccCChHHHHHHHHhhcC
Q 023000          221 GTELCPQCGARFSSVTTLIEHVEKIHD  247 (289)
Q Consensus       221 kp~~C~~Cgk~F~~~~~L~~H~~~~h~  247 (289)
                      .-|.|..|||.|.....|.+|.. .|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEA-QHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEA-QHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHH-HHT
T ss_pred             ceeeccccccccCCHHHHhHhHH-hcC
Confidence            36899999999999999999966 664

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.88  E-value=0.26  Score=26.58  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=16.5

Q ss_pred             cccccccCcccCChhhHHHHHH
Q 023000          259 VDVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       259 p~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      .|.|..||-+|+..+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4777778888888877777763

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=0.1  Score=33.89  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=17.0

Q ss_pred             CCCcccccccCcccCChhhHHHHHH
Q 023000          256 KVTVDVCPKCSQGFCDPVALVEHVE  280 (289)
Q Consensus       256 ~~~p~~C~~C~k~F~~~~~L~~H~~  280 (289)
                      |.+.|.|..|.+.|.+..+|..|++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCEEecccccCccCCHHHHHHHHc
Confidence            3445777777777777777777764

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=0.3  Score=25.09  Aligned_cols=19  Identities=26%  Similarity=0.532  Sum_probs=15.0

Q ss_pred             ccCcccCChhhHHHHHHhh
Q 023000          264 KCSQGFCDPVALVEHVERD  282 (289)
Q Consensus       264 ~C~k~F~~~~~L~~H~~~h  282 (289)
                      -|+|.|...++++.|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            4788888888888888554

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.22  E-value=0.24  Score=30.99  Aligned_cols=36  Identities=33%  Similarity=0.904  Sum_probs=23.4

Q ss_pred             CcCCcCCCC--CcccccccCCccCcccccC---CCccccccCC
Q 023000           11 KHCSLPDCK--QIDFLPFTCDCCHKVFCLD---HRSYNQHQCP   48 (289)
Q Consensus        11 ~~C~~~~C~--~~dfLPf~C~~C~k~Fc~~---h~~~~~H~c~   48 (289)
                      ..|.  +|+  ..|-.-|+|+.|++.||.+   -.++.-|+|+
T Consensus        16 ~~C~--gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~Cp   56 (59)
T d1z60a1          16 RFCY--GCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCP   56 (59)
T ss_dssp             CEET--TTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSS
T ss_pred             CCcc--CCCCcCCCCceEECcCCCCccccccchhhhhhhcCCC
Confidence            4455  665  3455568899999988877   2225566665

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=81.93  E-value=0.37  Score=24.41  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=13.2

Q ss_pred             cccCcccCChhhHHHHHHhhc
Q 023000          263 PKCSQGFCDPVALVEHVERDH  283 (289)
Q Consensus       263 ~~C~k~F~~~~~L~~H~~~hh  283 (289)
                      .-|++.|..-.+|..|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            346667776666766665553

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=0.59  Score=25.35  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=22.2

Q ss_pred             ccccCccCcccCChHHHHHHHHhhcCC
Q 023000          222 TELCPQCGARFSSVTTLIEHVEKIHDR  248 (289)
Q Consensus       222 p~~C~~Cgk~F~~~~~L~~H~~~~h~~  248 (289)
                      .|.|..||+.|.+...+.+|.. .-.|
T Consensus         4 afvcskcgktftrrntm~rha~-nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHAD-NCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH-HCCC
T ss_pred             eeeecccccchhcchHHHHHhh-hcCC
Confidence            5899999999999999999976 5444