Citrus Sinensis ID: 023017
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | 2.2.26 [Sep-21-2011] | |||||||
| Q5XF59 | 401 | 3-hydroxyisobutyryl-CoA h | no | no | 0.878 | 0.630 | 0.711 | 5e-99 | |
| Q8RXN4 | 409 | 3-hydroxyisobutyryl-CoA h | no | no | 0.982 | 0.691 | 0.582 | 4e-97 | |
| Q6NMB0 | 378 | Probable 3-hydroxyisobuty | no | no | 0.857 | 0.653 | 0.502 | 6e-70 | |
| Q9LKJ1 | 378 | 3-hydroxyisobutyryl-CoA h | no | no | 0.881 | 0.671 | 0.468 | 9e-66 | |
| Q1PEY5 | 378 | Probable 3-hydroxyisobuty | no | no | 0.857 | 0.653 | 0.481 | 1e-64 | |
| Q9SHJ8 | 387 | 3-hydroxyisobutyryl-CoA h | no | no | 0.843 | 0.627 | 0.412 | 1e-52 | |
| Q6NVY1 | 386 | 3-hydroxyisobutyryl-CoA h | no | no | 0.920 | 0.686 | 0.407 | 5e-49 | |
| Q8QZS1 | 385 | 3-hydroxyisobutyryl-CoA h | yes | no | 0.944 | 0.706 | 0.383 | 4e-47 | |
| Q5XIE6 | 385 | 3-hydroxyisobutyryl-CoA h | yes | no | 0.968 | 0.724 | 0.377 | 8e-47 | |
| A2VDC2 | 385 | 3-hydroxyisobutyryl-CoA h | N/A | no | 0.940 | 0.703 | 0.396 | 2e-46 |
| >sp|Q5XF59|HIBC4_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 360 bits (925), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 180/253 (71%), Positives = 214/253 (84%)
Query: 28 VTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS 87
++DL QVLVEG SR AILNRP ALNAL T+MG +L KL+K WE DPNIGFV MKGS
Sbjct: 31 TSEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGS 90
Query: 88 GRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
GRAFCAGGDIVSLYH +G + ++FF +LYSFIYLLGT+LKPHVAILNGVTMGGG G
Sbjct: 91 GRAFCAGGDIVSLYHLRTRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTG 150
Query: 148 VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMA 207
VSIPGTFRVA +T+FATPET+IGFHPDAGASF LSHLPG LGE+L LTG KL+GAEM+A
Sbjct: 151 VSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLA 210
Query: 208 CGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267
CGLATHY SE++P++EE+L KL+TDDPSV+E+CLEK +++ +P+K VI RID+++KCF
Sbjct: 211 CGLATHYIRSEEVPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCF 270
Query: 268 GLDTVEEIIDSLD 280
DTVEEIIDSL+
Sbjct: 271 SHDTVEEIIDSLE 283
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: - |
| >sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/290 (58%), Positives = 223/290 (76%), Gaps = 7/290 (2%)
Query: 1 MQRLK-ISNISRYFNDLRALSQHRTSSSVTD------DLCNQVLVEGKANSRMAILNRPS 53
MQ +K + +S +R++S R S++ + D +QVLVEGKA SR AILN PS
Sbjct: 1 MQTVKALRRVSEPLQWVRSVSYGRRFSALPNYSASDADFEDQVLVEGKAKSRAAILNNPS 60
Query: 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113
+LNAL+ M +L +L+++WE +P I FV MKGSG+ FC+G D++SLYH +N+G EE K
Sbjct: 61 SLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEESK 120
Query: 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH 173
FF LY F+YL GT+LKP++AI++GVTMG G G+S+PG FRVA KTV A PE IGFH
Sbjct: 121 LFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGFH 180
Query: 174 PDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD 233
PDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE +GKL+TD
Sbjct: 181 PDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERIGKLLTD 240
Query: 234 DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLDDVA 283
DP+VIE L +Y DLVYPD +SV+H+I+++DK FGLDTVEEII+++++ A
Sbjct: 241 DPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEA 290
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: - |
| >sp|Q6NMB0|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 124/247 (50%), Positives = 172/247 (69%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+QVLVE K++ R+ LNRP LNAL NM ++L +LF+A+E DP++ V +KG GRAFCA
Sbjct: 5 SQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCA 64
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGD+ + M QGK DFFR Y+ Y++ T+ KP V+ILNG+ MG GAGVSI G
Sbjct: 65 GGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A TVFA PET +G PD GAS++LS LPG GE++ LTGA+L+GAE++ACGLATH
Sbjct: 125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATH 184
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
+ S +L +E +L K+ + DPS + L+ Y+ + + S HR+D++D+CF T+E
Sbjct: 185 FVPSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTME 244
Query: 274 EIIDSLD 280
EII +L+
Sbjct: 245 EIISALE 251
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Involved in valine catabolism. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 172/254 (67%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+QVLVE K++ R+ LNRP LNAL+ +M ++L +LF A+E DP++ V +KG GRAFCA
Sbjct: 9 SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGD+ ++ +NQG ++F + Y Y++ T+ K V+ILNG+ MGGGAGVS+ G
Sbjct: 69 GGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A TVFA PET +G PD GAS++LS LPG GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
+ S +L +E +L ++ ++DP+ L+ Y+ + S R+D++D+CF TVE
Sbjct: 189 FVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVE 248
Query: 274 EIIDSLDDVAPSYA 287
EII +L+ A A
Sbjct: 249 EIISALEREATQEA 262
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Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q1PEY5|HIBC2_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 2 OS=Arabidopsis thaliana GN=At2g30650 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 170/247 (68%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+QVLVE K++ R+ NRP LNAL+ +M ++L +LF A+E DP++ V +KG GRAF A
Sbjct: 5 SQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSA 64
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGDI + + QGKL +F+ Y+ Y+L T+ KP V+ILNG+ MGGGAG+S G
Sbjct: 65 GGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGR 124
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A TVFA PET +G PD GAS++LS LPG GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 125 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 184
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
+ S L +E EL K+ + + + I L+ Y++ + +++S HR+D++D+CF TVE
Sbjct: 185 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVE 244
Query: 274 EIIDSLD 280
EI +L+
Sbjct: 245 EIFSALE 251
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Involved in valine catabolism. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9SHJ8|HIBC8_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 OS=Arabidopsis thaliana GN=At1g06550 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 155/245 (63%), Gaps = 2/245 (0%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
V+ E K + R+ LNRP LN ++ + KL + + WE D + +KG+GRAF AGG
Sbjct: 13 VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D+ YH Q + C + +Y Y + T+ K V+++NG++MGGGA + +P F
Sbjct: 73 DLKVFYH--GQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFS 130
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
V KTVFATPE GFH D G S+ S LPGHLGEFLALTGA+LNG E++A G+ATH+
Sbjct: 131 VVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHFV 190
Query: 216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
S KL +E L L + D V+++ +E++S+ V DK+S++++ ++++CF ++V++I
Sbjct: 191 PSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQI 250
Query: 276 IDSLD 280
I + +
Sbjct: 251 IQAFE 255
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: - |
| >sp|Q6NVY1|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 156/270 (57%), Gaps = 5/270 (1%)
Query: 22 HRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF 81
H S D +VL+E K + + LNRP LNAL NM ++ K WE DP
Sbjct: 24 HHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFL 83
Query: 82 VSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140
+ +KG+G +AFCAGGDI + + K + FFR Y +G+ KP+VA+++G+
Sbjct: 84 IIIKGAGGKAFCAGGDIRVISE-AEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGI 142
Query: 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL 200
TMGGG G+S+ G FRVA K +FA PET IG PD G ++L L G LG FLALTG +L
Sbjct: 143 TMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRL 202
Query: 201 NGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SDLVYPDKNSVIH 258
G ++ G+ATH+ SEKL ++EE+L L + I + LE Y + DK+ ++
Sbjct: 203 KGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILE 262
Query: 259 R-IDIVDKCFGLDTVEEIIDSLDDVAPSYA 287
+D ++ CF +TVEEII++L S+A
Sbjct: 263 EHMDKINSCFSANTVEEIIENLQQDGSSFA 292
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Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q8QZS1|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1 | Back alignment and function description |
|---|
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 158/279 (56%), Gaps = 7/279 (2%)
Query: 13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
F + QH S T+ +VL+E + + LNRP LNAL+ NM ++ K
Sbjct: 16 FRRASVILQHLRMSMHTE--AAEVLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKT 73
Query: 73 WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131
WE DP+ + +KG+G +AFCAGGDI +L + + +D FR Y + + K
Sbjct: 74 WEQDPDTFLIIIKGAGGKAFCAGGDIKALSE-AKKARQNLTQDLFREEYILNNAIASCQK 132
Query: 132 PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191
P+VA+++G+TMGGG G+S+ G FRVA +++FA PET IG PD G ++L L G LG
Sbjct: 133 PYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGY 192
Query: 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYP 251
FLALTG +L G ++ G+ATH+ SEKL ++EEEL L + + LE Y
Sbjct: 193 FLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKM 252
Query: 252 DKNSVI---HRIDIVDKCFGLDTVEEIIDSLDDVAPSYA 287
D++ I +D ++ CF +TVE+II++L +A
Sbjct: 253 DQDKSIIFEEHMDKINSCFSANTVEQIIENLRQDGSPFA 291
|
Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q5XIE6|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 165/289 (57%), Gaps = 10/289 (3%)
Query: 6 ISNISRYFNDLRALS---QHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNM 62
+ + F+ +R S QH S T+ +VL+E + + + LNRP LNAL+ NM
Sbjct: 6 VWRLQSRFSSIRRASVILQHLRMSKHTE--TAEVLLERRGCAGVITLNRPKLLNALSLNM 63
Query: 63 GAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS 121
++ K WE DP+ + +KG+G +AFCAGGDI +L G+ +D FR Y
Sbjct: 64 IRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQ-TLSQDLFREEYI 122
Query: 122 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFY 181
+ + KP+VA+++G+TMGGG G+S+ G FRVA +++FA PET IG PD G ++
Sbjct: 123 LNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYF 182
Query: 182 LSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEAC 241
L L G LG FLALTG +L G ++ G+ATH+ SEKL ++EEEL L + +
Sbjct: 183 LPRLQGKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGV 242
Query: 242 LEKY--SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLDDVAPSYA 287
LE Y + DK+ + +D ++ CF +TVE+I+++L +A
Sbjct: 243 LESYHAKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGSPFA 291
|
Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|A2VDC2|HIBCH_XENLA 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 165/285 (57%), Gaps = 14/285 (4%)
Query: 11 RYFNDLRALSQHRTSS--SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNK 68
+ F L+ + QH S +V D C L+ + + LNRP ALNALN M ++
Sbjct: 13 KVFGRLQVIRQHLRMSNHTVKDGGC---LLTKAGCAGVITLNRPKALNALNLGMIRQIYP 69
Query: 69 LFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE--CKDFFRTLYSFIYL 125
K WE DP V +KG+G +AFCAGGDI ++ + GK+ + +DFFR Y
Sbjct: 70 QLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAV---TDAGKVGDRLAQDFFREEYILNNA 126
Query: 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185
+GT KP+VA+++G+TMGGG G+S+ G FRVA KT+FA PET IG PD G ++L L
Sbjct: 127 IGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRL 186
Query: 186 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY 245
G LG +LALTG +L G+++ G+ATH+ SEKL +E++L + + + L+ Y
Sbjct: 187 TGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKLSSLEQDLVAMKSPSKENVADVLDSY 246
Query: 246 SDLVY--PDKNSVI-HRIDIVDKCFGLDTVEEIIDSLDDVAPSYA 287
Y DK V+ +D ++ F +TVEEI+++L S+A
Sbjct: 247 QKKSYAAQDKPFVLAENMDKINSLFSGNTVEEIMENLKCDGSSFA 291
|
Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | ||||||
| 255541138 | 415 | catalytic, putative [Ricinus communis] g | 0.902 | 0.626 | 0.753 | 1e-116 | |
| 356504605 | 407 | PREDICTED: 3-hydroxyisobutyryl-CoA hydro | 0.868 | 0.614 | 0.74 | 1e-110 | |
| 357512815 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like p | 0.927 | 0.665 | 0.681 | 1e-109 | |
| 224136292 | 415 | predicted protein [Populus trichocarpa] | 0.916 | 0.636 | 0.756 | 1e-109 | |
| 225430480 | 407 | PREDICTED: 3-hydroxyisobutyryl-CoA hydro | 0.927 | 0.656 | 0.661 | 1e-105 | |
| 225453474 | 405 | PREDICTED: 3-hydroxyisobutyryl-CoA hydro | 0.965 | 0.686 | 0.652 | 1e-103 | |
| 449442604 | 406 | PREDICTED: 3-hydroxyisobutyryl-CoA hydro | 0.972 | 0.689 | 0.664 | 1e-103 | |
| 223973415 | 406 | unknown [Zea mays] gi|414867666|tpg|DAA4 | 0.937 | 0.665 | 0.652 | 1e-101 | |
| 218184987 | 411 | hypothetical protein OsI_34593 [Oryza sa | 0.857 | 0.600 | 0.688 | 1e-100 | |
| 242035143 | 406 | hypothetical protein SORBIDRAFT_01g02960 | 0.875 | 0.620 | 0.686 | 1e-100 |
| >gi|255541138|ref|XP_002511633.1| catalytic, putative [Ricinus communis] gi|223548813|gb|EEF50302.1| catalytic, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/260 (75%), Positives = 232/260 (89%)
Query: 24 TSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVS 83
++S+ DDL QVLVE KA SR AILNRPSALNALNTNMGA+L KL+K+WE +P++GFV
Sbjct: 37 SNSTDDDDLDKQVLVESKAYSRTAILNRPSALNALNTNMGARLLKLYKSWEENPDVGFVM 96
Query: 84 MKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMG 143
MKGSGRAFCAGGDIV+LY+ + +GKLE+CK+FFRTLY+FIY+LGT+LKPHVAIL+G+TMG
Sbjct: 97 MKGSGRAFCAGGDIVTLYNLVKKGKLEDCKEFFRTLYTFIYILGTYLKPHVAILDGITMG 156
Query: 144 GGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA 203
GGAGVSIPGTFR+A KTVFATPETLIGFHPDAGASF+LSHLPGHLGE+LALTG LNG
Sbjct: 157 GGAGVSIPGTFRIATDKTVFATPETLIGFHPDAGASFHLSHLPGHLGEYLALTGETLNGV 216
Query: 204 EMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263
EM+ACGLATHYS SE+L LI+++LG+LVTDDPSVIEA LEKY DLV+PDK S +HRI+ V
Sbjct: 217 EMIACGLATHYSYSERLQLIDQQLGQLVTDDPSVIEATLEKYGDLVHPDKMSALHRIETV 276
Query: 264 DKCFGLDTVEEIIDSLDDVA 283
D+CFG DTVEEI ++L+ A
Sbjct: 277 DRCFGYDTVEEIFEALESEA 296
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504605|ref|XP_003521086.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/250 (74%), Positives = 220/250 (88%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
NQVLVEG SRMAILNRPSALNALNTNM A L+KL+++WE DP+IGFV +KGSGRAF A
Sbjct: 42 NQVLVEGNGFSRMAILNRPSALNALNTNMAATLHKLYRSWEEDPDIGFVMLKGSGRAFAA 101
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGDIV+LYH +N+G LE CK+FFRT YSF+YL+GT+LKPHVA+LNG+TMGGGAG+SIPGT
Sbjct: 102 GGDIVALYHLINKGNLEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGT 161
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FRVA KT+FATPE LIGFHPDA ASFYLSHLPG LGE+LALTG KLNG EM+ACGLATH
Sbjct: 162 FRVATDKTIFATPEVLIGFHPDAAASFYLSHLPGQLGEYLALTGEKLNGVEMVACGLATH 221
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
YS S +LPLIEE+LGKLVTDDPSVIE LE+Y ++V+ D +SV+ RI+++DKCF DTVE
Sbjct: 222 YSSSARLPLIEEQLGKLVTDDPSVIETTLEQYGEIVHLDSSSVLQRIEVLDKCFCHDTVE 281
Query: 274 EIIDSLDDVA 283
EI+D++++ A
Sbjct: 282 EIVDAMENAA 291
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512815|ref|XP_003626696.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] gi|355520718|gb|AET01172.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/276 (68%), Positives = 227/276 (82%), Gaps = 9/276 (3%)
Query: 17 RALSQHRTSSSVTDDLCN---------QVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
R+L R S +T L N VLVEG SR+A+LNRPS+LNA+NTNM A+L+
Sbjct: 10 RSLLMQRNSRRLTTTLSNSVDHHLLQDNVLVEGNGYSRLALLNRPSSLNAINTNMAARLH 69
Query: 68 KLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG 127
KL+++WE++P+IGFV +KG+GRAF AGGDIVSLY F+ QG LE CK FFRT YSFIYL+G
Sbjct: 70 KLYRSWEDNPDIGFVMLKGTGRAFAAGGDIVSLYRFIKQGNLEACKQFFRTAYSFIYLIG 129
Query: 128 THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187
T+LKPHVA+LNG+TMGGGAG+SIPGTFR+A KTVFATPE LIGFHPDA ASFYLS LPG
Sbjct: 130 TYLKPHVALLNGITMGGGAGISIPGTFRLATDKTVFATPEVLIGFHPDAAASFYLSRLPG 189
Query: 188 HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSD 247
H+GE+LALTG KLNG EM+ACGLATHYS+ +LPLIEE+LGKLVTDDPSVIE LE+Y D
Sbjct: 190 HIGEYLALTGEKLNGVEMVACGLATHYSLLARLPLIEEQLGKLVTDDPSVIETTLEQYGD 249
Query: 248 LVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLDDVA 283
LV+P +SV+ R++I+DKCFG DTVEEI+D+L+ A
Sbjct: 250 LVHPGSSSVLQRLEILDKCFGHDTVEEIVDALEVAA 285
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136292|ref|XP_002326825.1| predicted protein [Populus trichocarpa] gi|222835140|gb|EEE73575.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/267 (75%), Positives = 231/267 (86%), Gaps = 3/267 (1%)
Query: 17 RALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEND 76
R+LS +S DDL NQVLVE KANSR AILNRPSALNALNTNMGA+L KL+KAWE D
Sbjct: 36 RSLS---SSPPTEDDLDNQVLVEDKANSRSAILNRPSALNALNTNMGARLLKLYKAWEKD 92
Query: 77 PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136
++GFV++KGSGRAF AGGDIV+LYH +NQGK E C++FF TLY+FIY+LGT+LKPHVAI
Sbjct: 93 SSVGFVTLKGSGRAFSAGGDIVNLYHLINQGKWEACREFFGTLYTFIYVLGTYLKPHVAI 152
Query: 137 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALT 196
LNG+TMGGG G+SIPGTFR+A KTVFATPETLIGFHPDAGASF+LSHLPGHLGE+LALT
Sbjct: 153 LNGITMGGGTGISIPGTFRLATDKTVFATPETLIGFHPDAGASFFLSHLPGHLGEYLALT 212
Query: 197 GAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSV 256
G LNGAEM+ACGLATHY+ SEKL L+E LGKLVTDDPSVIE LE+Y DLVYPDK SV
Sbjct: 213 GGTLNGAEMIACGLATHYTNSEKLHLVEHHLGKLVTDDPSVIETSLEQYGDLVYPDKMSV 272
Query: 257 IHRIDIVDKCFGLDTVEEIIDSLDDVA 283
+HRI++VDKCF DTVEEI D+L+ A
Sbjct: 273 LHRIEMVDKCFSHDTVEEIFDALEREA 299
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430480|ref|XP_002283319.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera] gi|296082135|emb|CBI21140.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/272 (66%), Positives = 224/272 (82%), Gaps = 5/272 (1%)
Query: 19 LSQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW 73
S HR+ S++ DDL QVLVEG+A SR AILNRPS LNAL M A+L +L+++W
Sbjct: 22 FSHHRSFSALPNYARNDDLQEQVLVEGRAKSRAAILNRPSDLNALTIPMVARLKRLYESW 81
Query: 74 ENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133
E + ++GFV MKGSGRA C+GGD+V+L +N+GK+EECK FF TLY F+YLLGT++KP+
Sbjct: 82 EENSDLGFVIMKGSGRALCSGGDVVALNQLINEGKVEECKKFFETLYKFVYLLGTYVKPN 141
Query: 134 VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL 193
VAI++G+TMGGGAG+SIP FRV KTVFATPET +GFHPDAGASFYLS LPG+LGE+L
Sbjct: 142 VAIVDGITMGGGAGISIPAMFRVVTDKTVFATPETQMGFHPDAGASFYLSRLPGYLGEYL 201
Query: 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK 253
ALTG KLNG EM+ACGLATHYS++ +LPLIEE LGKL+TDDPSVIE+ LE+Y DLVYPDK
Sbjct: 202 ALTGEKLNGVEMIACGLATHYSLTARLPLIEERLGKLITDDPSVIESSLEQYGDLVYPDK 261
Query: 254 NSVIHRIDIVDKCFGLDTVEEIIDSLDDVAPS 285
SV+H+I+ +DKCF DTVEEII++L++ A S
Sbjct: 262 RSVLHKIETIDKCFCHDTVEEIINALENEASS 293
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453474|ref|XP_002274299.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial [Vitis vinifera] gi|297734569|emb|CBI16620.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/288 (65%), Positives = 231/288 (80%), Gaps = 10/288 (3%)
Query: 1 MQRLKISNISRYFNDLRAL---SQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRP 52
MQ LK+ + R + +R+ + HR S V +D ++VLVEG+ SR AILNRP
Sbjct: 1 MQSLKV--LWRRRSGIRSPPFPTHHRAFSYVPNPAAANDFDSEVLVEGEGCSRTAILNRP 58
Query: 53 SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112
LNALNT+MGA+L L+K+WE +P+IGFV MKGSGRAFCAGGDIV LY+ +N+G++E+C
Sbjct: 59 HVLNALNTSMGARLQNLYKSWEENPDIGFVVMKGSGRAFCAGGDIVGLYNLINKGRIEDC 118
Query: 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
K+FF T+YSFIYL+GT+LKP+VAIL+G+TMGGGAGVSIPG FRVA +TVFATPETLIGF
Sbjct: 119 KEFFGTVYSFIYLVGTYLKPNVAILDGITMGGGAGVSIPGMFRVATDRTVFATPETLIGF 178
Query: 173 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 232
H DAGASF+LSHLPG+ GE+LALTG KLNG EM+ACGLATHY+ S KLPLIEE LGKLVT
Sbjct: 179 HTDAGASFHLSHLPGYWGEYLALTGEKLNGPEMIACGLATHYAPSAKLPLIEEGLGKLVT 238
Query: 233 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLD 280
DDPSVIEA LE+Y L+ PD ++ RI+ +DKCF TVEEIID+L+
Sbjct: 239 DDPSVIEASLEQYGSLISPDNRGLLQRIETLDKCFSHGTVEEIIDALE 286
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442604|ref|XP_004139071.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 233/286 (81%), Gaps = 6/286 (2%)
Query: 1 MQRLKISNISRY-FNDLRALSQHRTSSSVTD-----DLCNQVLVEGKANSRMAILNRPSA 54
+Q LK++ +R +R L+Q R S+ D D +VLVEG+A SR AILNRPS
Sbjct: 2 VQSLKVALFTRRSLQTIRLLTQTRNQCSLLDHSSDHDHEQEVLVEGRAWSRTAILNRPSI 61
Query: 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114
LNALNTNMGA+L++L+ +WE +P++GFV +KGSGRAFCAGGDIVSLYH +N+G++E CK
Sbjct: 62 LNALNTNMGARLHELYNSWEENPDVGFVVLKGSGRAFCAGGDIVSLYHMINEGEIEHCKK 121
Query: 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP 174
FF TLY+FIY++GT+LKPHVAILNG+TMGGG G+SIPGTFRVA KTVFATPETLIGFHP
Sbjct: 122 FFSTLYAFIYMVGTYLKPHVAILNGITMGGGTGISIPGTFRVATDKTVFATPETLIGFHP 181
Query: 175 DAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDD 234
DAGASF+LSHLPG +GE+L LTG KL G EM+ACG+ATHYS S +LPLIEE LG LVTDD
Sbjct: 182 DAGASFHLSHLPGRMGEYLGLTGEKLKGEEMVACGVATHYSHSSRLPLIEEHLGNLVTDD 241
Query: 235 PSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLD 280
S++E+ L K+ D V+ DK SV+HRI+I+DKCF DTVEEIIDSL+
Sbjct: 242 ASIVESSLNKFGDRVHLDKTSVLHRIEILDKCFSHDTVEEIIDSLE 287
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|223973415|gb|ACN30895.1| unknown [Zea mays] gi|414867666|tpg|DAA46223.1| TPA: hypothetical protein ZEAMMB73_952637 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/273 (65%), Positives = 223/273 (81%), Gaps = 3/273 (1%)
Query: 13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
F LR LS + ++ + D +VLVEGK ++R A+LNRP LNAL T MGA+LNK +++
Sbjct: 23 FGGLRPLSSLQPLNAASSD---EVLVEGKTSARAAVLNRPGYLNALTTTMGARLNKFYQS 79
Query: 73 WENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKP 132
WE++P+IGFV MKGSGRAFCAGGD+V L+ +++GKLEECKDFF+TLY FIY LGT+LKP
Sbjct: 80 WEDNPDIGFVMMKGSGRAFCAGGDVVRLHELISEGKLEECKDFFKTLYMFIYFLGTYLKP 139
Query: 133 HVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192
HVAIL+G+TMGGG GVSIPGTFRVA +TVFATPE IGFHPDA ASFYLSHL GH+GE+
Sbjct: 140 HVAILDGITMGGGGGVSIPGTFRVATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVGEY 199
Query: 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD 252
+ALTG KLNG +M+A GLATHY +S L LI+E L KLVTDDPSVI++ L +Y D+VYPD
Sbjct: 200 VALTGEKLNGTDMIALGLATHYFMSGHLDLIDERLAKLVTDDPSVIDSSLAQYGDMVYPD 259
Query: 253 KNSVIHRIDIVDKCFGLDTVEEIIDSLDDVAPS 285
K S++HR++++DKCF DTVEEI+D+L+ A S
Sbjct: 260 KKSIVHRLEVIDKCFSHDTVEEIVDALESEAAS 292
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218184987|gb|EEC67414.1| hypothetical protein OsI_34593 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/247 (68%), Positives = 215/247 (87%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+VLVEGKA++R A+LNRP LNAL T MGA+LNK + +WE++P+IGFV MKGSGRAFCA
Sbjct: 46 EEVLVEGKASARAAVLNRPGHLNALTTTMGARLNKFYMSWEDNPDIGFVMMKGSGRAFCA 105
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGD+V L+ +++GKL+ECKDFF+TLYSFIY+LGT+LKPHVAIL+GVTMGGG GVSIPGT
Sbjct: 106 GGDVVRLHQLISEGKLDECKDFFKTLYSFIYVLGTYLKPHVAILDGVTMGGGGGVSIPGT 165
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A +TVFATPE IGFHPDA ASFYLSHL GH+GE+LALTG KLNG +M+A GLATH
Sbjct: 166 FRIATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVGEYLALTGEKLNGVDMIALGLATH 225
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
YS+S++L L++E L L+TDDPSVI+ L Y DLVYPDK+S++HR++++DKCF L+TVE
Sbjct: 226 YSMSDRLNLVDERLATLLTDDPSVIDTSLTHYGDLVYPDKSSIVHRLEVIDKCFSLETVE 285
Query: 274 EIIDSLD 280
EI+D+++
Sbjct: 286 EIVDAME 292
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242035143|ref|XP_002464966.1| hypothetical protein SORBIDRAFT_01g029600 [Sorghum bicolor] gi|241918820|gb|EER91964.1| hypothetical protein SORBIDRAFT_01g029600 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/252 (68%), Positives = 214/252 (84%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
++VLVEGKA +R A+LNRP LNAL T MGA+LNK +++WE++P+IGFV MKGSGRAFCA
Sbjct: 41 DEVLVEGKATARAAVLNRPGYLNALTTTMGARLNKFYESWEDNPDIGFVMMKGSGRAFCA 100
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGD+V L +++GKLEECKDFF+TLY FIY LGT+LKPH+AIL+GVTMGGG GVSIPGT
Sbjct: 101 GGDVVRLRELISEGKLEECKDFFKTLYMFIYFLGTYLKPHIAILDGVTMGGGGGVSIPGT 160
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A +TVFATPE IGFHPDA ASFYLSHL GH+GE++ALTG KLNG +M+A GLATH
Sbjct: 161 FRIATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVGEYVALTGEKLNGTDMIALGLATH 220
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
YS+S L LI+E L KLVTDDPSVI++ L +Y D+VYPDK S++HR++++DKCF DTVE
Sbjct: 221 YSMSGHLDLIDERLAKLVTDDPSVIDSSLAQYGDMVYPDKESIVHRLEVIDKCFSHDTVE 280
Query: 274 EIIDSLDDVAPS 285
EI+D+L+ A S
Sbjct: 281 EIVDALESEAAS 292
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | ||||||
| TAIR|locus:2116797 | 409 | AT4G31810 [Arabidopsis thalian | 0.982 | 0.691 | 0.589 | 1.6e-88 | |
| TAIR|locus:2054437 | 378 | AT2G30660 [Arabidopsis thalian | 0.857 | 0.653 | 0.502 | 3.3e-63 | |
| TAIR|locus:2152069 | 378 | CHY1 "beta-hydroxyisobutyryl-C | 0.881 | 0.671 | 0.468 | 1e-59 | |
| TAIR|locus:2054517 | 378 | AT2G30650 [Arabidopsis thalian | 0.857 | 0.653 | 0.481 | 2.2e-59 | |
| TAIR|locus:2009180 | 387 | AT1G06550 [Arabidopsis thalian | 0.843 | 0.627 | 0.412 | 7.4e-50 | |
| UNIPROTKB|Q6NVY1 | 386 | HIBCH "3-hydroxyisobutyryl-CoA | 0.961 | 0.717 | 0.4 | 1.2e-47 | |
| RGD|1308392 | 385 | Hibch "3-hydroxyisobutyryl-CoA | 0.944 | 0.706 | 0.393 | 1.3e-45 | |
| MGI|MGI:1923792 | 385 | Hibch "3-hydroxyisobutyryl-Coe | 0.954 | 0.714 | 0.390 | 2.1e-45 | |
| UNIPROTKB|Q5ZJ60 | 385 | HIBCH "3-hydroxyisobutyryl-CoA | 0.930 | 0.696 | 0.379 | 7.1e-45 | |
| UNIPROTKB|F1P188 | 385 | HIBCH "3-hydroxyisobutyryl-CoA | 0.930 | 0.696 | 0.379 | 9.1e-45 |
| TAIR|locus:2116797 AT4G31810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 171/290 (58%), Positives = 223/290 (76%)
Query: 1 MQRLK-ISNISRYFNDLRALSQHRTSS-----SVTD-DLCNQVLVEGKANSRMAILNRPS 53
MQ +K + +S +R++S R S S +D D +QVLVEGKA SR AILN PS
Sbjct: 1 MQTVKALRRVSEPLQWVRSVSYGRRFSALPNYSASDADFEDQVLVEGKAKSRAAILNNPS 60
Query: 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113
+LNAL+ M +L +L+++WE +P I FV MKGSG+ FC+G D++SLYH +N+G EE K
Sbjct: 61 SLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEESK 120
Query: 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH 173
FF LY F+YL GT+LKP++AI++GVTMG G G+S+PG FRVA KTV A PE IGFH
Sbjct: 121 LFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGFH 180
Query: 174 PDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD 233
PDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE +GKL+TD
Sbjct: 181 PDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERIGKLLTD 240
Query: 234 DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLDDVA 283
DP+VIE L +Y DLVYPD +SV+H+I+++DK FGLDTVEEII+++++ A
Sbjct: 241 DPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEA 290
|
|
| TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 124/247 (50%), Positives = 172/247 (69%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+QVLVE K++ R+ LNRP LNAL NM ++L +LF+A+E DP++ V +KG GRAFCA
Sbjct: 5 SQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCA 64
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGD+ + M QGK DFFR Y+ Y++ T+ KP V+ILNG+ MG GAGVSI G
Sbjct: 65 GGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A TVFA PET +G PD GAS++LS LPG GE++ LTGA+L+GAE++ACGLATH
Sbjct: 125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATH 184
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
+ S +L +E +L K+ + DPS + L+ Y+ + + S HR+D++D+CF T+E
Sbjct: 185 FVPSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTME 244
Query: 274 EIIDSLD 280
EII +L+
Sbjct: 245 EIISALE 251
|
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| TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 119/254 (46%), Positives = 172/254 (67%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+QVLVE K++ R+ LNRP LNAL+ +M ++L +LF A+E DP++ V +KG GRAFCA
Sbjct: 9 SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGD+ ++ +NQG ++F + Y Y++ T+ K V+ILNG+ MGGGAGVS+ G
Sbjct: 69 GGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A TVFA PET +G PD GAS++LS LPG GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
+ S +L +E +L ++ ++DP+ L+ Y+ + S R+D++D+CF TVE
Sbjct: 189 FVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVE 248
Query: 274 EIIDSLDDVAPSYA 287
EII +L+ A A
Sbjct: 249 EIISALEREATQEA 262
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| TAIR|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 119/247 (48%), Positives = 170/247 (68%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+QVLVE K++ R+ NRP LNAL+ +M ++L +LF A+E DP++ V +KG GRAF A
Sbjct: 5 SQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSA 64
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGDI + + QGKL +F+ Y+ Y+L T+ KP V+ILNG+ MGGGAG+S G
Sbjct: 65 GGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGR 124
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A TVFA PET +G PD GAS++LS LPG GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 125 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 184
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
+ S L +E EL K+ + + + I L+ Y++ + +++S HR+D++D+CF TVE
Sbjct: 185 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVE 244
Query: 274 EIIDSLD 280
EI +L+
Sbjct: 245 EIFSALE 251
|
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| TAIR|locus:2009180 AT1G06550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 101/245 (41%), Positives = 155/245 (63%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
V+ E K + R+ LNRP LN ++ + KL + + WE D + +KG+GRAF AGG
Sbjct: 13 VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D+ YH Q + C + +Y Y + T+ K V+++NG++MGGGA + +P F
Sbjct: 73 DLKVFYH--GQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFS 130
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
V KTVFATPE GFH D G S+ S LPGHLGEFLALTGA+LNG E++A G+ATH+
Sbjct: 131 VVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHFV 190
Query: 216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
S KL +E L L + D V+++ +E++S+ V DK+S++++ ++++CF ++V++I
Sbjct: 191 PSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQI 250
Query: 276 IDSLD 280
I + +
Sbjct: 251 IQAFE 255
|
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| UNIPROTKB|Q6NVY1 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 114/285 (40%), Positives = 163/285 (57%)
Query: 9 ISRY--FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKL 66
+SR+ F + H S TD +VL+E K + + LNRP LNAL NM ++
Sbjct: 10 MSRFNAFKRTNTILHHLRMSKHTD-AAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQI 68
Query: 67 NKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125
K WE DP + +KG+G +AFCAGGDI + + K + FFR Y
Sbjct: 69 YPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISE-AEKAKQKIAPVFFREEYMLNNA 127
Query: 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185
+G+ KP+VA+++G+TMGGG G+S+ G FRVA K +FA PET IG PD G ++L L
Sbjct: 128 VGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRL 187
Query: 186 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY 245
G LG FLALTG +L G ++ G+ATH+ SEKL ++EE+L L + I + LE Y
Sbjct: 188 QGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENY 247
Query: 246 --SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLDDVAPSYA 287
+ DK+ ++ +D ++ CF +TVEEII++L S+A
Sbjct: 248 HTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFA 292
|
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| RGD|1308392 Hibch "3-hydroxyisobutyryl-CoA hydrolase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 111/282 (39%), Positives = 166/282 (58%)
Query: 10 SRYFNDLRA--LSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
SR+ + RA + QH S T+ +VL+E + + + LNRP LNAL+ NM ++
Sbjct: 11 SRFSSIRRASVILQHLRMSKHTETA--EVLLERRGCAGVITLNRPKLLNALSLNMIRQIY 68
Query: 68 KLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 126
K WE DP+ + +KG+G +AFCAGGDI +L G+ +D FR Y +
Sbjct: 69 PQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLS-QDLFREEYILNNAI 127
Query: 127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186
+ KP+VA+++G+TMGGG G+S+ G FRVA +++FA PET IG PD G ++L L
Sbjct: 128 ASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ 187
Query: 187 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY- 245
G LG FLALTG +L G ++ G+ATH+ SEKL ++EEEL L + + LE Y
Sbjct: 188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYH 247
Query: 246 -SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSL-DDVAP 284
+ DK+ + +D ++ CF +TVE+I+++L D +P
Sbjct: 248 AKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGSP 289
|
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| MGI|MGI:1923792 Hibch "3-hydroxyisobutyryl-Coenzyme A hydrolase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 111/284 (39%), Positives = 165/284 (58%)
Query: 6 ISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAK 65
+S +S F + QH S T+ +VL+E + + LNRP LNAL+ NM +
Sbjct: 10 LSRVSS-FRRASVILQHLRMSMHTE--AAEVLLERRGCGGVITLNRPKFLNALSLNMIRQ 66
Query: 66 LNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124
+ K WE DP+ + +KG+G +AFCAGGDI +L + + +D FR Y
Sbjct: 67 IYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSE-AKKARQNLTQDLFREEYILNN 125
Query: 125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184
+ + KP+VA+++G+TMGGG G+S+ G FRVA +++FA PET IG PD G ++L
Sbjct: 126 AIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPR 185
Query: 185 LPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEK 244
L G LG FLALTG +L G ++ G+ATH+ SEKL ++EEEL L + + LE
Sbjct: 186 LQGKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLES 245
Query: 245 YSDLVYPDKN-SVI--HRIDIVDKCFGLDTVEEIIDSL-DDVAP 284
Y D++ S+I +D ++ CF +TVE+II++L D +P
Sbjct: 246 YHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLRQDGSP 289
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| UNIPROTKB|Q5ZJ60 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 106/279 (37%), Positives = 162/279 (58%)
Query: 13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
FN L+ + QH + TD + VL++ + + + LNRP LNAL+ M ++ KA
Sbjct: 15 FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73
Query: 73 WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTH 129
WE DP + +KG+G +AFCAGGD+ ++ + GK + +D+FR Y +GT
Sbjct: 74 WEQDPETFLIIIKGTGEKAFCAGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTC 130
Query: 130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189
KP+VA+++G+TMGGG G+S+ G FRVA KTVFA PET IG PD G ++L L G +
Sbjct: 131 KKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKI 190
Query: 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SD 247
G LALTG +L G +++ G+ATH+ S KLP +E++L L + I L Y
Sbjct: 191 GHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQT 250
Query: 248 LVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSL-DDVAP 284
+ +K V+ ++ ++ F +++EEI+ L D +P
Sbjct: 251 KIDQEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGSP 289
|
|
| UNIPROTKB|F1P188 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 106/279 (37%), Positives = 162/279 (58%)
Query: 13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
FN L+ + QH + TD + VL++ + + + LNRP LNAL+ M ++ KA
Sbjct: 15 FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73
Query: 73 WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTH 129
WE DP + +KG+G +AFCAGGD+ ++ + GK + +D+FR Y +GT
Sbjct: 74 WEQDPETFLIIIKGTGEKAFCAGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTC 130
Query: 130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189
KP+VA+++G+TMGGG G+S+ G FRVA KTVFA PET IG PD G ++L L G +
Sbjct: 131 KKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKI 190
Query: 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SD 247
G LALTG +L G +++ G+ATH+ S KLP +E++L L + I L Y
Sbjct: 191 GHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQT 250
Query: 248 LVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSL-DDVAP 284
+ +K V+ ++ ++ F +++EEI+ L D +P
Sbjct: 251 KIDQEKEFVLDEHMERINSIFSANSMEEIVHKLKQDGSP 289
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.40.97.1 | hypothetical protein (381 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pg.C_LG_VIII0916 | enoyl-CoA hydratase (EC-4.2.1.17) (265 aa) | • | • | • | 0.907 | |||||
 | grail3.0006050201 | enoyl-CoA hydratase (EC-4.2.1.17) (265 aa) | • | • | • | 0.907 | |||||
 | estExt_fgenesh4_pg.C_LG_VI1023 | SubName- Full=Putative uncharacterized protein; (380 aa) | • | • | • | 0.907 | |||||
 | eugene3.00013051 | hypothetical protein (348 aa) | • | • | • | 0.900 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 288 | |||
| PLN02851 | 407 | PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol | 1e-150 | |
| PLN02157 | 401 | PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol | 1e-136 | |
| PLN02874 | 379 | PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol | 4e-92 | |
| PLN02988 | 381 | PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol | 1e-80 | |
| PRK05617 | 342 | PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol | 2e-76 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 4e-40 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 2e-37 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 8e-23 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 1e-20 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 7e-18 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 7e-18 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 2e-17 | |
| PRK05980 | 260 | PRK05980, PRK05980, enoyl-CoA hydratase; Provision | 2e-17 | |
| PRK05862 | 257 | PRK05862, PRK05862, enoyl-CoA hydratase; Provision | 5e-16 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 2e-15 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 8e-15 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 2e-14 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 9e-14 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 1e-13 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 3e-13 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 6e-13 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 6e-13 | |
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 7e-13 | |
| PRK06023 | 251 | PRK06023, PRK06023, enoyl-CoA hydratase; Provision | 2e-12 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 3e-12 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 3e-12 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 4e-12 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 1e-11 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 1e-11 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 2e-11 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 2e-10 | |
| PRK07799 | 263 | PRK07799, PRK07799, enoyl-CoA hydratase; Provision | 3e-10 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 3e-10 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 8e-10 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 8e-10 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 1e-09 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 1e-09 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 2e-09 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 3e-09 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 4e-09 | |
| PRK09120 | 275 | PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata | 5e-09 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 3e-08 | |
| PRK12478 | 298 | PRK12478, PRK12478, enoyl-CoA hydratase; Provision | 7e-08 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 1e-07 | |
| PRK08150 | 255 | PRK08150, PRK08150, enoyl-CoA hydratase; Provision | 2e-07 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 5e-07 | |
| PRK08252 | 254 | PRK08252, PRK08252, enoyl-CoA hydratase; Provision | 9e-07 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 3e-06 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 4e-06 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 4e-06 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 4e-06 | |
| TIGR03200 | 360 | TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car | 6e-06 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 9e-06 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 1e-05 | |
| PRK07938 | 249 | PRK07938, PRK07938, enoyl-CoA hydratase; Provision | 2e-05 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 2e-05 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 3e-05 | |
| PRK08290 | 288 | PRK08290, PRK08290, enoyl-CoA hydratase; Provision | 1e-04 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 2e-04 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 3e-04 | |
| PLN02921 | 327 | PLN02921, PLN02921, naphthoate synthase | 6e-04 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 7e-04 | |
| TIGR03189 | 251 | TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar | 0.002 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 0.003 | |
| PRK07396 | 273 | PRK07396, PRK07396, dihydroxynaphthoic acid synthe | 0.004 |
| >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 425 bits (1093), Expect = e-150
Identities = 182/293 (62%), Positives = 234/293 (79%), Gaps = 8/293 (2%)
Query: 1 MQRLK-ISNISRYFNDLR--ALSQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRP 52
MQR+K + ++ +R ++S R+ S++ DDL +QVLVEG+A SR AILNRP
Sbjct: 1 MQRVKALRRVAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRP 60
Query: 53 SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112
S+LNAL M A+L +L+++WE +P+IGFV MKGSGRAFC+G D+VSLYH +N+G +EEC
Sbjct: 61 SSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120
Query: 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
K FF LY F+YL GT+LKP+VAI++G+TMG GAG+SIPG FRV KTVFA PE +GF
Sbjct: 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGF 180
Query: 173 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 232
HPDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE LGKL+T
Sbjct: 181 HPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLT 240
Query: 233 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLDDVAPS 285
DDP+VIE L +Y DLVYPDK+SV+H+I+ +DKCFG DTVEEII++L++ A S
Sbjct: 241 DDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAAS 293
|
Length = 407 |
| >gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 390 bits (1002), Expect = e-136
Identities = 180/252 (71%), Positives = 213/252 (84%)
Query: 29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG 88
+DL QVLVEG SR AILNRP ALNAL T+MG +L KL+K WE DPNIGFV MKGSG
Sbjct: 32 PEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG 91
Query: 89 RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGV 148
RAFCAGGDIVSLYH +G + ++FF +LYSFIYLLGT+LKPHVAILNGVTMGGG GV
Sbjct: 92 RAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGV 151
Query: 149 SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMAC 208
SIPGTFRVA +T+FATPET+IGFHPDAGASF LSHLPG LGE+L LTG KL+GAEM+AC
Sbjct: 152 SIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLAC 211
Query: 209 GLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 268
GLATHY SE++P++EE+L KL+TDDPSV+E+CLEK +++ +P+K VI RID+++KCF
Sbjct: 212 GLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFS 271
Query: 269 LDTVEEIIDSLD 280
DTVEEIIDSL+
Sbjct: 272 HDTVEEIIDSLE 283
|
Length = 401 |
| >gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 277 bits (710), Expect = 4e-92
Identities = 109/245 (44%), Positives = 160/245 (65%), Gaps = 2/245 (0%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
VL E K R+ LNRP LN ++ ++ + L + + WE D ++ + +KG+GRAF AGG
Sbjct: 13 VLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGG 72
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D+ Y + + C + +Y Y + T+ K VA+++G+ MGGGAG+ +P FR
Sbjct: 73 DLKMFYD--GRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFR 130
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
V KTVFATPE +GFH D G S+ LS LPGHLGE+LALTGA+LNG EM+ACGLATH+
Sbjct: 131 VVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGARLNGKEMVACGLATHFV 190
Query: 216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
SEKLP +E+ L L + D S ++ +E++S V D++S++++ +++CF DTVEEI
Sbjct: 191 PSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEI 250
Query: 276 IDSLD 280
I + +
Sbjct: 251 IKAFE 255
|
Length = 379 |
| >gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 248 bits (633), Expect = 1e-80
Identities = 120/254 (47%), Positives = 170/254 (66%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+QVLVE K++ R+ LNRP LNAL+ +M ++L +LF A+E DP++ V +KG GRAFCA
Sbjct: 9 SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
GGD+ ++ + QG +FF Y Y++ T+ K V+ILNG+ MGGGAGVS+ G
Sbjct: 69 GGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
FR+A TVFA PET +G PD GAS++LS LPG GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188
Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
+ S +L +E +L ++ ++DP+ L+ Y+ S HR+D++D+CF TVE
Sbjct: 189 FVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVE 248
Query: 274 EIIDSLDDVAPSYA 287
EII +L+ A A
Sbjct: 249 EIISALEREATQEA 262
|
Length = 381 |
| >gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (603), Expect = 2e-76
Identities = 92/234 (39%), Positives = 138/234 (58%), Gaps = 4/234 (1%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
LNRP ALNAL+ M ++ AWE+D + V ++G+G R FCAGGDI +LY G
Sbjct: 18 LNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAG 77
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
FFR Y L+ + KP++A+++G+ MGGG G+S G+ R+ +T A PE
Sbjct: 78 DPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPE 137
Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
T IGF PD G +++LS PG LG +LALTGA+++ A+ + GLA H+ S LP + + L
Sbjct: 138 TGIGFFPDVGGTYFLSRAPGALGTYLALTGARISAADALYAGLADHFVPSADLPALLDAL 197
Query: 228 GKLVTDDPS-VIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLD 280
L D + V++A L ++ + + + +D+CF DTVE+II +L+
Sbjct: 198 ISLRWDSGADVVDAALAAFA--TPAPASELAAQRAWIDECFAGDTVEDIIAALE 249
|
Length = 342 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 4e-40
Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP NAL+ M +L E DP++ V + G+G+AFCAG D+ L + G
Sbjct: 14 LNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAG- 72
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
EE + F R L + L KP +A +NG +GGG +++ R+A F PE
Sbjct: 73 -EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV 131
Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
+G P G + L L G L LTG +++ E + GL E+L
Sbjct: 132 KLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEEL 184
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-37
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 5/191 (2%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+LVE + + LNRP LNALN M +L + E DP++ V + G+G+AF AG
Sbjct: 7 ILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGA 66
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D+ G E + + + L KP +A +NG +GGG +++ R
Sbjct: 67 DL-KELLSPEDGNAAE--NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIR 123
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
+A F PE +G P G + L L G L LTG ++ AE + GL
Sbjct: 124 IAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDE- 182
Query: 215 SVSEKLPLIEE 225
V + L+E
Sbjct: 183 VVPDAEELLER 193
|
Length = 257 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 8e-23
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L+RP A+NAL+ + +L + + E DP++ + + G AF AG DI +
Sbjct: 13 LDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAA----EP 68
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
L + F L KP +A +NG +GGG +++ +R+A F PE
Sbjct: 69 LAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEV 128
Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGL 210
+G P AG + L + G + LTG ++ E + GL
Sbjct: 129 KLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGL 171
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-20
Identities = 52/167 (31%), Positives = 71/167 (42%), Gaps = 8/167 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
+NRP NAL M L +A DP + V + G+GRAF AGGDI F
Sbjct: 20 INRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKD---FPKAPP 76
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ D + F+ + KP VA +NG +G G +++ A F+ P
Sbjct: 77 --KPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA 134
Query: 169 LIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATH 213
+G PDAG S L L G E + L G L+ E + GL
Sbjct: 135 KLGLCPDAGGSALLPRLIGRARAAE-MLLLGEPLSAEEALRIGLVNR 180
|
Length = 259 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 7e-18
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 7/175 (4%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+ VE + + ++RP LNALN M + K DP I V + G GRAFC G
Sbjct: 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGA 61
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D+ D T Y I + K +++ +NGVT G G+++ F+
Sbjct: 62 DLSEF-----APDFAI--DLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFK 114
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
A F T +G D G +++L L G + + G + E GL
Sbjct: 115 FASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFTAEEAERWGL 169
|
Length = 248 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 7e-18
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 27/223 (12%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
V++E + + + +NRP ALNALN+ +L+ + END N+ V + G+G +AF
Sbjct: 4 KNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFV 63
Query: 93 AGGDIVSLYHFMNQGKLEECKDF-------FRTLYSFIYLLGTHLKPHVAILNGVTMGGG 145
AG DI M EE + F FR L L KP +A +NG +GGG
Sbjct: 64 AGADISE----MKDLNEEEGRKFGLLGNKVFRKL----ENLD---KPVIAAINGFALGGG 112
Query: 146 AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGA 203
+S+ R+A K F PE +G P G + L+ + PG E L TG +N
Sbjct: 113 CELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKE-LIYTGDMINAE 171
Query: 204 EMMACGLATHYSVSEKLPLIEEELG---KLVTDDPSVIEACLE 243
E + GL V E L+EE K+ + P ++ C +
Sbjct: 172 EALRIGLVN--KVVEPEKLMEEAKALANKIAANAPIAVKLCKD 212
|
Length = 260 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-17
Identities = 66/230 (28%), Positives = 95/230 (41%), Gaps = 51/230 (22%)
Query: 29 TDDLCNQVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
+ VL+E A+ +A+ LNRP A NALN + +L + F DP+I + + G
Sbjct: 2 MSTATDVVLLERPADG-VALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG 60
Query: 87 SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL---------KPHVAIL 137
+ F AG DI F G +E +YL T KP +A +
Sbjct: 61 GEKVFAAGADIKE---FATAGAIE------------MYLRHTERYWEAIAQCPKPVIAAV 105
Query: 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF----L 193
NG +GGG +++ VA F PE +G P AG + L +G+F +
Sbjct: 106 NGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGT---QRLVRAVGKFKAMRM 162
Query: 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLE 243
ALTG + E +A GL VSE V +D + LE
Sbjct: 163 ALTGCMVPAPEALAIGL-----VSE------------VVEDEQTLPRALE 195
|
Length = 261 |
| >gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-17
Identities = 63/214 (29%), Positives = 91/214 (42%), Gaps = 11/214 (5%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
VL+E + + LNRP LNALN + +L A E D ++ V + G+G RAF AG
Sbjct: 5 VLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAG 64
Query: 95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
DI + G +DF R + L KP +A +NG+ GGG ++
Sbjct: 65 ADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHL 124
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG-----EFLALTGAKLNGAEMMACG 209
+A + +FA PE +G P G + LP G E L LTG + + G
Sbjct: 125 AIASERALFAKPEIRLGMPPTFGGT---QRLPRLAGRKRALELL-LTGDAFSAERALEIG 180
Query: 210 LATH-YSVSEKLPLIEEELGKLVTDDPSVIEACL 242
L E LP +++ P + A L
Sbjct: 181 LVNAVVPHEELLPAARALARRIIRHSPVAVAAIL 214
|
Length = 260 |
| >gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 5e-16
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+LVE + + LNRP ALNALN + +L A++ D IG + + GS +AF AG
Sbjct: 6 ILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGA 65
Query: 96 DI--VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
DI ++ FM+ K D+ + KP +A + G +GGG +++
Sbjct: 66 DIKEMADLSFMDVYK----GDYITNWEK----VARIRKPVIAAVAGYALGGGCELAMMCD 117
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACG 209
+A F PE +G P G S L +G+ L LTG ++ AE G
Sbjct: 118 IIIAADTAKFGQPEIKLGVLPGMGGS---QRLTRAVGKAKAMDLCLTGRMMDAAEAERAG 174
Query: 210 LATHYSVSEKLP---LIEEELG 228
L VS +P L++E L
Sbjct: 175 L-----VSRVVPADKLLDEALA 191
|
Length = 257 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-15
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 4/196 (2%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP NA N + A+L F+A + D ++ V + G+G+AFCAG D+ + M
Sbjct: 19 LNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKK-MAGYS 77
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+E + R L + + KP +A ++G GG G+ VA VF E
Sbjct: 78 DDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV 137
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVS-EKL-PLIEEE 226
+G P + + + + LT + + AE + GL H V E L ++E
Sbjct: 138 RLGLIPATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLV-HEVVPAEALDAKVDEL 196
Query: 227 LGKLVTDDPSVIEACL 242
L LV + P + A
Sbjct: 197 LAALVANSPQAVRAGK 212
|
Length = 262 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 8e-15
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 8/189 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
LNRP A NAL+ + +L + + N+ V + G+G +AFCAG D+ MN+
Sbjct: 19 LNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAG-MNE- 76
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
E+ + + + + ++ +P +A +NG+ +GGG +++ FR+A E
Sbjct: 77 --EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTE 134
Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE 225
T + P AG + L L G E L TG +++ E GL + L
Sbjct: 135 TTLAIIPGAGGTQRLPRLIGVGRAKE-LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI 193
Query: 226 ELGKLVTDD 234
E+ + + +
Sbjct: 194 EIAEKIASN 202
|
Length = 260 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-14
Identities = 56/180 (31%), Positives = 79/180 (43%), Gaps = 15/180 (8%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
VE K + + LNRP +NAL+ + +L ++F + DP + G+G +AF AG
Sbjct: 6 STVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAG 65
Query: 95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
D L GK + F L S L KP +A +NGV MGGG +++
Sbjct: 66 ND---LKEQAAGGKRGWPESGFGGLTSRFDL----DKPIIAAVNGVAMGGGFELALACDL 118
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
VA FA PE +G AG LP +G A LTG ++ E + G
Sbjct: 119 IVAAENATFALPEPRVGLAALAGGLH---RLPRQIGLKRAMGMILTGRRVTAREGLELGF 175
|
Length = 259 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-14
Identities = 57/192 (29%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Query: 35 QVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFC 92
VL E A+S +A+ LNRP LNA M A++ E DP + + + G+GR FC
Sbjct: 6 AVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFC 64
Query: 93 AGGDIVSL----------YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
AG D+ L + D ++T Y F+ L KP +A +NG
Sbjct: 65 AGADMGELQTIDPSDGRRDTDVRPFVGNRRPD-YQTRYHFLTALR---KPVIAAINGACA 120
Query: 143 GGGAGVSIPGTFRVACGKTVFATPET---LIGFHPDAGASFYLSHLPGHLGEF-LALTGA 198
G G ++ R A F T LI H G S+ L L GH L L+
Sbjct: 121 GIGLTHALMCDVRFAADGAKFTTAFARRGLIAEH---GISWILPRLVGHANALDLLLSAR 177
Query: 199 KLNGAEMMACGL 210
E + GL
Sbjct: 178 TFYAEEALRLGL 189
|
Length = 272 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-13
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
+N P NA+ M A+L A E DP++ + + G+G+AFCAG D+ +L G+
Sbjct: 18 VNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTAL--GAAPGR 75
Query: 109 LEECKDFFRTLY-SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
E D R +Y F+ + L P +A +NG +G G +++ R+A K +F
Sbjct: 76 PAE--DGLRRIYDGFLAVASCPL-PTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARF 132
Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLAT 212
+G HP GA++ L G + L G + + + GLA
Sbjct: 133 QKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178
|
Length = 249 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-13
Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 16/219 (7%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+LVE R LNRP A NAL+ + L + D ++ V + G+ AFCAG
Sbjct: 6 LLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGL 65
Query: 96 DIVSL----YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
D+ L + Q L KP + +NG + GG +++
Sbjct: 66 DLKELGGDGSAYGAQDALPNP----------SPAWPAMRKPVIGAINGAAVTGGLELALA 115
Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGL 210
+A + FA +G P G S L G ++LTG L+ A+ + GL
Sbjct: 116 CDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGL 175
Query: 211 ATH-YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDL 248
T E LP + ++P+ + A Y D
Sbjct: 176 VTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDG 214
|
Length = 258 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-13
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 5/164 (3%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP LN+ M +L + + E D + + + G+GR FCAG D+ G
Sbjct: 14 LNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAGRGFCAGQDLSERN--PTPGG 70
Query: 109 LEECKDFFRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
+ T Y+ + L P V +NGV G GA +++ +A F
Sbjct: 71 APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAF 130
Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGL 210
IG PD+G ++ L L G LA+ G KL+ + GL
Sbjct: 131 AKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGL 174
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 6e-13
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
LNRPS NAL+ + + K + + +PN+ + + G+G FC+G D+ +L Q
Sbjct: 22 NLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQS 81
Query: 108 KL-------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
E + + L I + KP +A ++G +GGG + R
Sbjct: 82 SSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED 141
Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLG----EFLALTGAKLNGAEMMACGLAT 212
F+ E + D G L LP +G LALTG + +G+E GL +
Sbjct: 142 AFFSVKEVDLAITADLGT---LQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194
|
Length = 275 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-13
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 9/171 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQG 107
L+RP A NA+ M L F+ + D + V ++ S FCAG D+ M+
Sbjct: 10 LDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADL-KERRKMS-- 66
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATP 166
E + F +L S L P +A++ G +GGG +++ R+ CG+ VF P
Sbjct: 67 -PSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRI-CGEEAVFGLP 124
Query: 167 ETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSV 216
ET + P AG + L L G + L TG ++ E + GL +Y V
Sbjct: 125 ETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLV-NYCV 174
|
Length = 251 |
| >gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-12
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 11/215 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
NRP NA+ M A + K KA + D I G+ F AG D+ G
Sbjct: 21 FNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGT 80
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
F + F+ L KP V+ ++G+ +G G + + A +++F TP
Sbjct: 81 -----SFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFV 135
Query: 169 LIGFHPDAGASFYLSHLPGHLGEF--LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226
+ P+AG+S L GH F LAL G + GL + + ++ +E E
Sbjct: 136 DLALVPEAGSSLLAPRLMGHQRAFALLAL-GEGFSAEAAQEAGLI--WKIVDE-EAVEAE 191
Query: 227 LGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 261
K + + L+ DL+ + ++ RID
Sbjct: 192 TLKAAEELAAKPPQALQIARDLMRGPREDILARID 226
|
Length = 251 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-12
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 5/165 (3%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
+LNRP ALNAL+ M +L + K + + V ++G+GR F AGGDI + ++
Sbjct: 20 MLNRPEALNALDEPMLKELLQALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMM---LSSN 75
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
+ T+ + L T K ++ ++G G G +++ + +A A
Sbjct: 76 DESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNF 135
Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLA 211
IG PD G F+L G + + + G KL+ E + GL
Sbjct: 136 IGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLI 180
|
Length = 260 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-12
Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 10/257 (3%)
Query: 24 TSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVS 83
++ S ++L E N P+ NA++ +M L + A E+D I V
Sbjct: 1 STMSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVV 60
Query: 84 MKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVT 141
+ G+G +AF +G DI F E + L + KP +A + G
Sbjct: 61 LTGAGEKAFVSGADIS---QFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYC 117
Query: 142 MGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAK 199
+GGG G+++ R+A + F P +G L L P + T +
Sbjct: 118 IGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF-YTARR 176
Query: 200 LNGAEMMACGLATHYSVSEKL-PLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH 258
+ AE + GL + ++ L + + + + P + A ++L+ + +
Sbjct: 177 FDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMA 236
Query: 259 RID-IVDKCFGLDTVEE 274
+V CF + E
Sbjct: 237 ACQALVAACFDSEDYRE 253
|
Length = 269 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-12
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L+ P A NAL+ +M A + E DP+I V + G+G FCAGG++ L N+ K
Sbjct: 18 LSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLE--NRAK 75
Query: 109 -LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
L+ +I + KP +A + G G G +++ VA F
Sbjct: 76 PPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAY 135
Query: 168 TLIGFHPDAGASFYLSH-LPGHLGEFLALTGAKLNGAEMMACGL 210
+G PD G S++L+ LP L L L G ++ + A G+
Sbjct: 136 VKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGV 179
|
Length = 260 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-11
Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 7/175 (4%)
Query: 45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM 104
+ LNRP A NALN + +L +A D +IG + G+ R F AG D+ M
Sbjct: 13 LLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNE----M 68
Query: 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
+ L + R L KP +A +NG +G G +++ +A F
Sbjct: 69 AEKDLAATLNDPRPQL--WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFG 126
Query: 165 TPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSE 218
PE +G P AG + L G L + LTG + + GL + E
Sbjct: 127 LPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181
|
Length = 255 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-11
Identities = 52/190 (27%), Positives = 70/190 (36%), Gaps = 38/190 (20%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP +NAL+ M +L K + D I V + G G AFCAG D+ S +
Sbjct: 18 LNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKS---VASSPG 74
Query: 109 LEECKDFFRTLYSFIYLLGTHLK------------------PHVAILNGVTMGGGAGVSI 150
+ LL L P +A L GV GGG +++
Sbjct: 75 NA------------VKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIAL 122
Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMAC 208
R+A T + E G PD + L L E L T + E +
Sbjct: 123 GADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARE-LTYTARVFSAEEALEL 181
Query: 209 GLATHYSVSE 218
GL TH VS+
Sbjct: 182 GLVTH--VSD 189
|
Length = 262 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 31/161 (19%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS--------- 99
LNRP LNA M +L + F A + D + V + G+GRAFCAG D+ +
Sbjct: 19 LNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDA 78
Query: 100 ---LYHFMNQGKLEECKDFFR------TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSI 150
+ + + D R TL F LKP +A +NG +G GA +++
Sbjct: 79 PRTPVEADEEDRADPSDDGVRDGGGRVTLRIF-----DSLKPVIAAVNGPAVGVGATMTL 133
Query: 151 PGTFRVACGKT----VFATPETLIGFHPDAGASFYLSHLPG 187
R+A VF G P+A +S++L L G
Sbjct: 134 AMDIRLASTAARFGFVFGR----RGIVPEAASSWFLPRLVG 170
|
Length = 296 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ-- 106
LNRP NA+N ++L ++F+ + DP + V + GSG+ F G D+ ++ Q
Sbjct: 21 LNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80
Query: 107 -----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
+ + L + I + KP +A + G +GGG + R A
Sbjct: 81 KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADA 140
Query: 162 VFATPETLIGFHPDAGASFYLSHLP-----GHLGEFLALTGAKLNGAEMMACGL 210
F+ E +G D G+ L LP GHL E LALTG ++ AE GL
Sbjct: 141 KFSVREVDLGMVADVGS---LQRLPRIIGDGHLRE-LALTGRDIDAAEAEKIGL 190
|
Length = 272 |
| >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW---ENDPNIGFVSMKGSGRAFCA 93
LVE + ++ + +NRP A NAL+T M L + AW +NDP+I + G+G AFCA
Sbjct: 8 LVEQRGHTLIVTMNRPEARNALSTEM---LRIMVDAWDRVDNDPDIRSCILTGAGGAFCA 64
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH--LKPHVAILNGVTMGGGAGVSIP 151
G D+ + + + KD LL KP +A + G + GG + +
Sbjct: 65 GMDLKAA---TKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEI-LQ 120
Query: 152 GT-FRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACG 209
GT RVA F E P G++ L +P + L LTG + AE G
Sbjct: 121 GTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIG 180
Query: 210 LATH 213
L H
Sbjct: 181 LIGH 184
|
Length = 263 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 31 DLCNQVLVEGKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR 89
N +LV N I +NRP ALNAL M +L FK + D ++ + + GSGR
Sbjct: 6 VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGR 65
Query: 90 AFCAGGDI 97
AFC+G D+
Sbjct: 66 AFCSGVDL 73
|
Length = 265 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 8e-10
Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 26/206 (12%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSL------ 100
L+RP A NA++ + ++F + +DP + + G+G + F AG D+ +
Sbjct: 17 TLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP 75
Query: 101 ---YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 157
+ L E D KP +A +NG GGG +++ F V
Sbjct: 76 DADFGPGGFAGLTEIFDLD--------------KPVIAAVNGYAFGGGFELALAADFIVC 121
Query: 158 CGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACGLATHYSV 216
FA PE +G PD+G L LP + + +TG +++ E + G+
Sbjct: 122 ADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVP 181
Query: 217 SEKLPLIEEELGKLVTDDPSVIEACL 242
+L EL + + + + A L
Sbjct: 182 QAELMDRARELAQQLVNSAPLAIAAL 207
|
Length = 261 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 8e-10
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP LN+ M +L + E D + + G+GR FCAG D+ G
Sbjct: 19 LNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADR-DVTPGGA 76
Query: 109 LEECKDFFRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
+ + + T Y+ + L P +A +NGV G GA +++ +A F
Sbjct: 77 MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAF 136
Query: 168 TLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
IG PD+G +++L L G LG LAL G KL+ + GL
Sbjct: 137 VKIGLVPDSGGTWFLPRLVGMARALG--LALLGEKLSAEQAEQWGL 180
|
Length = 262 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 43 NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH 102
NS++ L++ L +N+L W N+ V + G +F AG DI +
Sbjct: 32 NSKVNTLSK-----ELFAEFKEVMNEL---WTNEAIKSAVLISGKPGSFVAGADIQMI-- 81
Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG--K 160
+E + + KP VA ++G +GGG +++ +R+A K
Sbjct: 82 -AACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRK 140
Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLN 201
T+ PE ++G P AG + L L G + LTG K+
Sbjct: 141 TLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIR 182
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 32/210 (15%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LN P A NAL++ + +L++L E D N+ V + G GR F AG DI F + +
Sbjct: 17 LNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADI---KEFTSVTE 72
Query: 109 LEECKDFFRTLYSFIYLLGTHL--------KPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
E+ + + LG KP +A ++G +GGG +++ R A
Sbjct: 73 AEQ--------ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES 124
Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATHYSV 216
PE +G P + LP ++G+ A LT + GAE + GL
Sbjct: 125 AKLGLPELNLGLIPGFAGT---QRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNG-VF 180
Query: 217 SEKLPLIEEEL---GKLVTDDPSVIEACLE 243
E+ L+++ K+ P+ A LE
Sbjct: 181 PEE-TLLDDAKKLAKKIAGKSPATTRAVLE 209
|
Length = 257 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 1/182 (0%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP N N M ++ + + E DP++ F+ + +G+ F GGD+V + +++
Sbjct: 17 LNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDD 76
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
++ + + + KP + ++G G A +++ F +A KT F
Sbjct: 77 VQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV 136
Query: 169 LIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
+G PDAG F L+ G + LA+TG L + + G + SEKL E+L
Sbjct: 137 GVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQL 196
Query: 228 GK 229
K
Sbjct: 197 LK 198
|
Length = 255 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-09
Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 16/201 (7%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ-- 106
L+R NA N M +L ++D ++ F+ ++G GR F AG D+ +M Q
Sbjct: 21 LSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLA----WMQQSA 76
Query: 107 -----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
L++ R L +Y L P +A++ G GG G+ +
Sbjct: 77 DLDYNTNLDDA----RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDA 132
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL-ATHYSVSEKL 220
F E IG P + F + + ALT + +G GL A Y +E
Sbjct: 133 QFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELE 192
Query: 221 PLIEEELGKLVTDDPSVIEAC 241
+E + L+ + P + A
Sbjct: 193 AQVEAWIANLLLNSPQALRAS 213
|
Length = 265 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-09
Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 24/177 (13%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQ 106
NRP+A NA+ M L ++ +A DP+I V ++G+G +AF AG DI F
Sbjct: 22 TFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAF--- 78
Query: 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
E+ + R + + L P +A + G +GGGA ++ R+ ATP
Sbjct: 79 STAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRI-------ATP 131
Query: 167 ETLIGFHPDA-------GASFYLSHLPGHLG----EFLALTGAKLNGAEMMACGLAT 212
GF P A S + L LG + + T L E +A GL
Sbjct: 132 SARFGF-PIARTLGNCLSMSNL-ARLVALLGAARVKDMLFTARLLEAEEALAAGLVN 186
|
Length = 262 |
| >gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 12/199 (6%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP NA++ + ++ + A E D + G + + G+G A+ AG D+ + +
Sbjct: 23 LNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQP 82
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ R Y + L + KP +A++NG GGG + +A + F E
Sbjct: 83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEI 142
Query: 169 LIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATHYSVSEKLPLIE--- 224
G P G S ++ GH + +TG G + GL V+E +PL +
Sbjct: 143 NWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGL-----VNESVPLAQLRA 197
Query: 225 ---EELGKLVTDDPSVIEA 240
E KL+ +P V+ A
Sbjct: 198 RTRELAAKLLEKNPVVLRA 216
|
Length = 275 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
Query: 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA 90
+ +Q+ +E + + L+ P +NAL+ + +L +F P++ V + G+G+
Sbjct: 1 MMMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKV 59
Query: 91 FCAGGDIVSLYHFMNQGKLEECKDFF---RTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
FCAG D+ ++ D R + + KP +A +NG +G G G
Sbjct: 60 FCAGADLKG-----RPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLG 114
Query: 148 VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMA 207
+ VA VF PE +G G + L + LTG ++ AE+
Sbjct: 115 LVASCDIIVASENAVFGLPEIDVGLA--GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYR 172
Query: 208 CGL 210
G+
Sbjct: 173 RGV 175
|
Length = 257 |
| >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 7e-08
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 34/205 (16%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH-----F 103
LNRP LN + M ++ E D +I + ++G+GRAF G D +
Sbjct: 20 LNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAM 79
Query: 104 MNQGKLEECKDFFRT-------LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRV 156
M G+ + KDF F+ + KP +A ++G +GG + ++
Sbjct: 80 MTDGRWDPGKDFAMVTARETGPTQKFMAIWRAS-KPVIAQVHGWCVGGASDYAL------ 132
Query: 157 ACGKTVFATPETLIGFHPDA---GA---SFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
C V A+ + +IG P + GA +L L ++ +LTG L G + L
Sbjct: 133 -CADIVIASDDAVIG-TPYSRMWGAYLTGMWLYRLSLAKVKWHSLTGRPLTGVQAAEAEL 190
Query: 211 ATHYSVSEKLPL--IEEELGKLVTD 233
++E +P +E + ++ T+
Sbjct: 191 -----INEAVPFERLEARVAEVATE 210
|
Length = 298 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 49 LNRPSALNALNTN-MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLY--HFMN 105
+NRP NAL+ N L A D ++ V + G+G AF +GG++ +
Sbjct: 18 MNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAF 77
Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLK-PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
G + + +R I L +L+ P +A +NG +G G ++ R+A FA
Sbjct: 78 GGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFA 137
Query: 165 TPETLIGFHP-DAGASFYLSHLPGHLG-----EFLALTGAKLNGAEMMACGLATHYSVSE 218
+G P D GA LP +G E +A TG ++ A + GL VS
Sbjct: 138 ESFVKLGLIPGDGGAWL----LPRIIGMARAAE-MAFTGDAIDAATALEWGL-----VSR 187
Query: 219 KLP 221
+P
Sbjct: 188 VVP 190
|
Length = 266 |
| >gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 56/198 (28%), Positives = 77/198 (38%), Gaps = 26/198 (13%)
Query: 25 SSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSM 84
S V+ +L V G LNRP+ NALN + A L F + V +
Sbjct: 1 PSLVSYELDGGVATIG--------LNRPAKRNALNDGLIAALRAAFARLPEG--VRAVVL 50
Query: 85 KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL----YSFIYLLGTHLKPHVAILNGV 140
G G FCAG D+ L + + + R Y + P +A L+G
Sbjct: 51 HGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRV--------PVIAALHGA 102
Query: 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG--HLGEFLALTGA 198
+GGG ++ RVA T FA PE G G S + L G + + + LTG
Sbjct: 103 VVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD-MMLTGR 161
Query: 199 KLNGAEMMACGLATHYSV 216
+ E GLA Y V
Sbjct: 162 VYDAQEGERLGLA-QYLV 178
|
Length = 255 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--- 105
LNRP NAL+ M A+L + D + V + G+G++FCAGGD+ + M
Sbjct: 20 LNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR 79
Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
++EE R L + L KP + + G GGG G
Sbjct: 80 ATRIEEA----RRLAMMLKALNDLPKPLIGRIQGQAFGGGVG 117
|
Length = 262 |
| >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 9e-07
Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 9/177 (5%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
VLVE + + +NRP A NA+N + L + DP++ + G+G FCAG
Sbjct: 5 VLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGM 64
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D L F +G+ R KP +A + G + GG +++
Sbjct: 65 D---LKAFA-RGERPSIPG--RGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLI 116
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSH-LPGHLGEFLALTGAKLNGAEMMACGLA 211
VA F PE G G L +P H+ LALTG L GL
Sbjct: 117 VAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLV 173
|
Length = 254 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGD 96
LNRP A NAL+ M A L A DP++ V + +G+AFCAG D
Sbjct: 26 LNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHD 73
|
Length = 266 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPN-IGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
L+ P +NA++ +M L + A E+ + + + G+GR FC G ++ QG
Sbjct: 19 LDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANL--------QG 70
Query: 108 KLEECKDF---------FRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 157
+ ++ T Y F+ L P V +NG G G ++ G +
Sbjct: 71 RGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILC 130
Query: 158 CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 210
F IG PD G+++ L L G L+L G KL + GL
Sbjct: 131 ARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGL 184
|
Length = 266 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 4/165 (2%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP N L A+L LF+ ++ V + G+G FC+GGD+ + + +
Sbjct: 32 LNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMD 91
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ E F R + + +P +A ++GV G GA +++ R+ A T
Sbjct: 92 MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFT 151
Query: 169 LIGFH-PDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
+G D GA L + G E L TG ++ E G
Sbjct: 152 RVGLAGADMGACALLPRIIGQGRASELL-YTGRSMSAEEGERWGF 195
|
Length = 277 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-06
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGD--IVSLYHFM 104
+NRP NA ++ + DP+IG V + G+G +AFC+GGD + Y ++
Sbjct: 17 TINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYI 76
Query: 105 NQGKLEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGG 145
+ + D R + + KP +A++NG +GGG
Sbjct: 77 DDSGVHRLNVLDVQRQIRTCP-------KPVIAMVNGYAIGGG 112
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 6e-06
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGG 95
+V G N+ + IL+ P N+ T+M + F+ +D ++ V G +AFC GG
Sbjct: 32 VVPGLYNAWI-ILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGG 90
Query: 96 DIVSL--YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
+ Y+ N + + F + S I LG KP + +NG+ +GGG + +
Sbjct: 91 NTKEYAEYYAGNPQEYRQYMRLFNDMVSAI--LGCD-KPVICRVNGMRIGGGQEIGMAAD 147
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYL 182
F +A F G P GA+ +L
Sbjct: 148 FTIAQDLANFGQAGPKHGSAPIGGATDFL 176
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-06
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 7/160 (4%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI---VSLYHFM 104
+ P ++N + A L++ A + ++ V + AF G DI + L+ +
Sbjct: 21 KFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLF-AL 79
Query: 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
+L + F ++++ + L P VA +NG+ +GGG + FR+A
Sbjct: 80 PDAELIQWLLFANSIFNKLEDLPV---PTVAAINGIALGGGCECVLATDFRIADDTAKIG 136
Query: 165 TPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204
PET +G P G + L + G + K N AE
Sbjct: 137 LPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAE 176
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 48/167 (28%), Positives = 65/167 (38%), Gaps = 7/167 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L+ P NAL+ + A+L+ +A DP + V + +G FCAG D L G
Sbjct: 21 LDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGAD---LSEAGGGGG 77
Query: 109 LEECKDFFRTLYSFIYLLGTHL---KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
R LL + KP +A ++G GG G+ VA ++ FA
Sbjct: 78 DPYDAAVARAR-EMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFAL 136
Query: 166 PETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 212
E IG P + L L LTG K AE GL T
Sbjct: 137 TEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFGAAEAARIGLVT 183
|
Length = 260 |
| >gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 59/212 (27%), Positives = 79/212 (37%), Gaps = 37/212 (17%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
++ P +NAL + L A DP+ V ++ GR F AG DI L
Sbjct: 16 TVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFT 74
Query: 108 KL----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
L C FR +Y P +A ++G +GGG G+ VA F
Sbjct: 75 ALIDANRGCFAAFRAVYE-------CAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATF 127
Query: 164 ATPETLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 219
PE D GA +HL P HL L T A + AE+ G SV E
Sbjct: 128 GLPEV------DRGALGAATHLQRLVPQHLMRALFFTAATITAAELHHFG-----SVEEV 176
Query: 220 LPLIEEEL--------GKLVTDDPSVIEACLE 243
+P ++L K+ D VI A E
Sbjct: 177 VP--RDQLDEAALEVARKIAAKDTRVIRAAKE 206
|
Length = 249 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 47/197 (23%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
LNRP NA+ + +L + + DP + + + G+G+ FCAG D+ + + G
Sbjct: 24 TLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83
Query: 108 KLEECKDFFRTLYS----------------------FIYLLGTHLKPHVAILNGVTMGGG 145
R + F+ L H KP VA ++G + GG
Sbjct: 84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAH-KPTVAKVHGYCVAGG 142
Query: 146 AGVSIPGTFRVACGKTVFATPETLIGFH-------PDAGASFYLSHLPGHLG----EFLA 194
+++ V A + IG+ P G Y LG + L
Sbjct: 143 TDIAL-------HCDQVIAADDAKIGYPPTRVWGVPATGMWAY------RLGPQRAKRLL 189
Query: 195 LTGAKLNGAEMMACGLA 211
TG + GA+ GLA
Sbjct: 190 FTGDCITGAQAAEWGLA 206
|
Length = 302 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGD 96
+LN P ALNA + M +L +++ + DP++ V ++G G+AF AGGD
Sbjct: 26 VLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGD 74
|
Length = 268 |
| >gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 45/188 (23%), Positives = 67/188 (35%), Gaps = 29/188 (15%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS------LYH 102
LNRP A NA N M +L+ F+ E D + + + G+G+ F AG D+ S
Sbjct: 19 LNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDP 78
Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHL------------KPHVAILNGVTMGGGAGVSI 150
+Q + Y + KP +A + G + GG ++
Sbjct: 79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAW 138
Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG-----EFLALTGAKLNGAEM 205
VA F+ P +G Y +H P LG E L TG +L E
Sbjct: 139 VCDLIVASDDAFFSDPVVRMG----IPGVEYFAH-PWELGPRKAKELL-FTGDRLTADEA 192
Query: 206 MACGLATH 213
G+
Sbjct: 193 HRLGMVNR 200
|
Length = 288 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP +N++ ++ L + D ++ V + G+GR F +G D S +
Sbjct: 25 LNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEG 84
Query: 109 LEECKDFFRT---LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
L R+ L I L +P +A +NG +GGG +++ RVA F
Sbjct: 85 LTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYF 142
|
Length = 276 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 22/63 (34%), Positives = 29/63 (46%)
Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
V VE ILNRP NA++ A L F+A++ D + G+G FCA
Sbjct: 3 MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCA 62
Query: 94 GGD 96
G D
Sbjct: 63 GAD 65
|
Length = 254 |
| >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
TD + + + EG A ++ I NRP NA +L + F +D ++G + + G
Sbjct: 63 EFTDIIYEKAVGEGIA--KITI-NRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTG 119
Query: 87 SG-RAFCAGGD 96
G +AFC+GGD
Sbjct: 120 KGTKAFCSGGD 130
|
Length = 327 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 7e-04
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQ 106
++NRP+ +NA +L K D IG + + G+G +AFC GGD S +
Sbjct: 16 MINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD-QSTHDGGYD 74
Query: 107 GK------LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
G+ +EE R + KP +A + G +GGG + +A K
Sbjct: 75 GRGTIGLPMEELHSAIRDV----------PKPVIARVQGYAIGGGNVLVTICDLTIASEK 124
Query: 161 TVF 163
F
Sbjct: 125 AQF 127
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.002
Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 8/164 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L RP A N ++ M A L+ D + V + G F G + +
Sbjct: 16 LARPKA-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASV-------AEHM 67
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
++C +L+ + + P + + G +GGG V+ G A PE
Sbjct: 68 PDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEI 127
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 212
++G A + + E L +G ++GAE GLA
Sbjct: 128 VLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLAN 171
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 55 LNALNTNMGAKLNKLFKAWENDPNI-GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113
+N L +++++ + D +I G V + G F AG DI L G+ +
Sbjct: 23 MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALA 82
Query: 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVFATPETLIG 171
+ L++ + L + VA ++G +GGG +++ RV KTV PE +G
Sbjct: 83 QQGQVLFAELEALPIPV---VAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLG 139
Query: 172 FHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 210
P +G + L L G + LTG +L + + GL
Sbjct: 140 LLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGL 179
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGD 96
+NRP NA ++ F +D NIG + + G+G +AFC+GGD
Sbjct: 28 INRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGD 76
|
Length = 273 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 100.0 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.83 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.83 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.69 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.61 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.59 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.58 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.55 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.54 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.49 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.41 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.36 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 98.99 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 98.86 | |
| PRK10949 | 618 | protease 4; Provisional | 98.86 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.81 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 98.77 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.7 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.64 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 98.62 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.57 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.55 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 98.53 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 98.5 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 98.48 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.48 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.47 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.44 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.42 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 98.39 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 98.3 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.27 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 98.25 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 98.25 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.23 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.21 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 98.13 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 98.1 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 98.07 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 98.02 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 97.92 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 97.84 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 97.82 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.66 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 97.64 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 97.63 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 97.59 | |
| PRK10949 | 618 | protease 4; Provisional | 97.58 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 97.53 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.33 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 97.17 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 97.04 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 96.94 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 96.1 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 95.58 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 95.25 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 95.15 | |
| PF13766 | 118 | ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD | 94.58 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 91.92 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 91.58 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 80.76 |
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-55 Score=387.19 Aligned_cols=253 Identities=26% Similarity=0.378 Sum_probs=222.4
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
+.|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++............
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 4689999999999999999999999999999999999999999999999999999 799999999987542111111223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+.+..++++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 162 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL 162 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence 44555566788899999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +...+..++ +
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 242 (260)
T PRK05980 163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGS 242 (260)
T ss_pred HHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988887777 7999999999999999998765554444433 345566666 7
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 243 ~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 243 ADLREGLAAWIERRRPAY 260 (260)
T ss_pred hhHHHHHHHHhccCCCCC
Confidence 899999999999999986
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-54 Score=379.75 Aligned_cols=248 Identities=24% Similarity=0.242 Sum_probs=218.6
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
+.|.++++++|++|+||||++.|++|.+|+.+|.++++.++ +++|+|||||.|++||+|.|++++... +.....
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~~~ 75 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRER----DAGEGM 75 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhc----cchhHH
Confidence 46889999999999999999999999999999999999997 789999999999999999999987532 111222
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 3345567788899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++.......+.... +...+..++ ++
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~ 235 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAP 235 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999988877777 8999999999999999998765554444433 244555666 68
Q ss_pred CcHHHHHHhhcCCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~~ 287 (288)
+..+++.+|++||+|+|.
T Consensus 236 d~~eg~~af~~kr~p~~~ 253 (255)
T PRK08150 236 EAKERLRAFLEKKAAKVK 253 (255)
T ss_pred HHHHHHHHHhccCCCCCC
Confidence 999999999999999983
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=383.47 Aligned_cols=255 Identities=21% Similarity=0.285 Sum_probs=222.5
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhc-------
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN------- 105 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~------- 105 (288)
++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.....
T Consensus 5 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (272)
T PRK06142 5 YESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL 84 (272)
T ss_pred cceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999998753210
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc
Q 023017 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
.........+...+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 164 (272)
T PRK06142 85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRI 164 (272)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHH
Confidence 01112233344556778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RID 261 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~ 261 (288)
+|.. +++|+++|++++|+||+++||||+++|+ +++.+.+.++ ++++..+|.+++.+|+.+++.....+..... +..
T Consensus 165 ~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~ 244 (272)
T PRK06142 165 IGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVAT 244 (272)
T ss_pred hCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999 9999999999999999999999999996 7788777777 7999999999999999998765554444433 345
Q ss_pred HHHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 262 IVDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 262 ~~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
.+..++ +++..|++.+|+|||+|+|.
T Consensus 245 ~~~~~~~~~d~~egv~af~~kr~p~~~ 271 (272)
T PRK06142 245 WNAAMLPSKDLTEAIAAHMEKRPPEFT 271 (272)
T ss_pred HHHHHhcCccHHHHHHHHhcCCCCCCC
Confidence 555666 78999999999999999984
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-54 Score=379.13 Aligned_cols=249 Identities=21% Similarity=0.304 Sum_probs=219.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
+.++.++++++|++||||||++ |++|.+|+.+|.++++.+++|+++++|||+|.| ++||+|.|++++... +...
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~~ 76 (258)
T PRK09076 2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKAV 76 (258)
T ss_pred ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chhh
Confidence 3468999999999999999985 999999999999999999999999999999999 789999999987531 1222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 156 (258)
T PRK09076 77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWA 156 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233445566788899999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++............ +...+..++
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 236 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFD 236 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888877777 8999999999999999998765444444333 355666777
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..|++.+|++||+|+|
T Consensus 237 ~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 237 TEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred CchHHHHHHHHhcCCCCCC
Confidence 6899999999999999998
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-54 Score=380.60 Aligned_cols=252 Identities=21% Similarity=0.350 Sum_probs=223.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.+.|.++++++|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|.| ++||+|.|++++... ..+.+.
T Consensus 10 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~--~~~~~~ 87 (269)
T PRK06127 10 TGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEES--RSDAEA 87 (269)
T ss_pred CCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhc--ccchHH
Confidence 34589999999999999999999999999999999999999999999999999998 799999999987532 112222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 88 ~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 88 VAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 334445566788889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~- 267 (288)
++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......+....+. ...+..++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 247 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFD 247 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998888777 79999999999999999987765555444433 55666776
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|+|||+|+|
T Consensus 248 ~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 248 SEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred ChHHHHHHHHHhcCCCCCC
Confidence 6899999999999999997
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-54 Score=379.50 Aligned_cols=251 Identities=18% Similarity=0.250 Sum_probs=216.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... . +.
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~--~-~~-- 75 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG--Y-DG-- 75 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc--c-cc--
Confidence 35688999999999999999999999999999999999999999999999999999 799999999987421 1 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.. |
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 76 RGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred hhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 111223346678889999999999999999999999999999999999999999999999998888899999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc-C
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF-G 268 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~-~ 268 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++............+...+..++ +
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGMGMYALKLYYDT 235 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999988877777 8999999999999999998654321111111234556666 6
Q ss_pred cCcHHHHHHhhcCCCCCC-CC
Q 023017 269 LDTVEEIIDSLDDVAPSY-AY 288 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~-~~ 288 (288)
++..+++.+|+|||+|+| .|
T Consensus 236 ~d~~e~~~af~~kr~p~~~~~ 256 (256)
T TIGR03210 236 AESREGVKAFQEKRKPEFRKY 256 (256)
T ss_pred hhHHHHHHHHhccCCCCCCCC
Confidence 799999999999999998 55
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-54 Score=380.91 Aligned_cols=255 Identities=19% Similarity=0.310 Sum_probs=220.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhcc--CC
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNT-NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ--GK 108 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~-~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~--~~ 108 (288)
|.+++.++++++|++||||||++.|++|. +|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++...... ..
T Consensus 1 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 1 MTDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred CCCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 34579999999999999999999999995 9999999999999999999999999999999999999987532110 01
Q ss_pred hHH-HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 109 LEE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 109 ~~~-~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
... ...+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG 160 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence 111 1223334567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~ 264 (288)
.. +++|+++|++++|+||+++||||+++|++++++.+.++ ++++..||.+++.+|+.++............ +.+.+.
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 240 (266)
T PRK09245 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQA 240 (266)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999988877777 8999999999999999998765444444333 245556
Q ss_pred HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.++ +++..+++.+|++||+|+|
T Consensus 241 ~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 241 LAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred HHhcCHhHHHHHHHHHcCCCCCC
Confidence 666 6899999999999999997
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-54 Score=379.32 Aligned_cols=248 Identities=23% Similarity=0.330 Sum_probs=219.2
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++... +. .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~--~ 76 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF--M 76 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch--h
Confidence 35688999999999999999999999999999999999999999999999999999999999999987531 11 1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 77 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 77 DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 11223344567789999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.+++.....+..... +...+..++ +
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFAT 236 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988877777 7999999999999999998765555444433 345566666 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 237 ~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 237 EDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred hhHHHHHHHHhccCCCCC
Confidence 899999999999999987
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-54 Score=379.05 Aligned_cols=251 Identities=22% Similarity=0.362 Sum_probs=223.2
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCCh
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 109 (288)
|.++|.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... +.
T Consensus 1 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~ 76 (260)
T PRK07657 1 MLQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NE 76 (260)
T ss_pred CCceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Ch
Confidence 345789986 789999999999999999999999999999999999999999999999 599999999987531 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH
Q 023017 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 189 (288)
.....+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 156 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 156 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH
Confidence 23344555667888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHH
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKC 266 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~ 266 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+..... +...+..+
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~ 236 (260)
T PRK07657 157 RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGT 236 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777 8999999999999999998765555444433 34566666
Q ss_pred c-CcCcHHHHHHhhcCCCCCC
Q 023017 267 F-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 267 ~-~~~~~e~~~~~lekr~p~~ 286 (288)
+ +++..+++.+|++||+|+|
T Consensus 237 ~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 237 IPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred hcCHhHHHHHHHHhcCCCCCC
Confidence 6 6899999999999999998
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=378.46 Aligned_cols=253 Identities=23% Similarity=0.306 Sum_probs=218.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++ |+++++|||+|.|++||+|.|++++............
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 457899999999999999999999999999999999999999 9999999999999999999999987431100111111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~ 161 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL 161 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 12222344577889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +...+..++ +
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 241 (262)
T PRK08140 162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRS 241 (262)
T ss_pred HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998888877777 8999999999999999998765555444433 345566666 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|.|
T Consensus 242 ~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 242 ADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred hhHHHHHHHHhcCCCCCC
Confidence 899999999999999987
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=379.23 Aligned_cols=253 Identities=20% Similarity=0.292 Sum_probs=217.9
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.++.|.+++ +++|++|+||||++.|+++.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++... .....
T Consensus 9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~~~~~ 86 (268)
T PRK07327 9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEM--ADDFE 86 (268)
T ss_pred CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhc--cCcHH
Confidence 466799998 589999999999999999999999999999999999999999999999999999999987542 11222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+.....+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence 2334455566788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc-
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF- 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~- 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...................++
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 246 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEFMGFS 246 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHcc
Confidence 99999999999999999999999999999988877777 8999999999999999998542211111112222222345
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|+|||+|+|
T Consensus 247 ~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 247 GPDVREGLASLREKRAPDF 265 (268)
T ss_pred ChhHHHHHHHHHhcCCCCC
Confidence 6899999999999999998
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=377.58 Aligned_cols=250 Identities=22% Similarity=0.294 Sum_probs=220.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
.+.+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+.||+|.|++++... .+.+..
T Consensus 10 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~~ 86 (266)
T PRK08139 10 APLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLAYF 86 (266)
T ss_pred CCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchhHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999987531 122233
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+++.+.+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+++ +++|++++|.. ++
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 44556667788899999999999999999999999999999999999999999999999999775 56899999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|.++..+|+.++............ +.+.+..++ +
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 245 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMA 245 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998888777 8999999999999999998776555544443 345555666 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 246 ~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 246 EDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred chHHHHHHHHhcCCCCCC
Confidence 899999999999999997
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=376.59 Aligned_cols=253 Identities=22% Similarity=0.322 Sum_probs=223.6
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.++.++++++|++|+||||+++|++|.+|+.+|.++++.+++|+++|+|||+|.|+.||+|.|++++.... ........
T Consensus 3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~-~~~~~~~~ 81 (260)
T PRK07511 3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENR-AKPPSVQA 81 (260)
T ss_pred CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcc-cccchhHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999875421 11122334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (260)
T PRK07511 82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATE 161 (260)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHH
Confidence 4556677889999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
|+++|++++++||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +.+.+..++ ++
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 241 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHA 241 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999998887777666 7899999999999999998765554444333 356666777 68
Q ss_pred CcHHHHHHhhcCCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~~ 287 (288)
+..+++.+|+++|+|+|.
T Consensus 242 ~~~~~i~~f~~~r~~~~~ 259 (260)
T PRK07511 242 DALEGIAAFLEKRAPDYK 259 (260)
T ss_pred hHHHHHHHHhccCCCCCC
Confidence 999999999999999974
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=379.33 Aligned_cols=252 Identities=21% Similarity=0.255 Sum_probs=221.7
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
.+.++++++|++|+||||++.|+++.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.......+......
T Consensus 18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999998743111112222334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccC-CCchHHHHhhcchHH-HHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~~~~g~~-a~~ 192 (288)
+.+.+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|.. +++
T Consensus 98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~ 177 (277)
T PRK08258 98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE 177 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence 455556788899999999999999999999999999999999999999999999999995 678899999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+..... +...+..++ ++
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~ 257 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTE 257 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999998888877777 8999999999999999998776555554443 355666676 68
Q ss_pred CcHHHHHHhhcCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~ 286 (288)
|..+++.+|+|||+|+|
T Consensus 258 d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 258 DFRRAYEAFVAKRKPVF 274 (277)
T ss_pred hHHHHHHHHhcCCCCCC
Confidence 99999999999999997
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=376.50 Aligned_cols=247 Identities=23% Similarity=0.310 Sum_probs=218.5
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
..|.++++++|++||||||+++|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|.|++++... +. ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~--~~ 75 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL--AA 75 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch--hh
Confidence 3578899999999999999999999999999999999999999999999999999999999999987531 11 11
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+.....+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 2223345678889999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
++++|++++|+||+++||||+++|++++.+.+..+ ++++..+|.++..+|+.++...........+ +...+..++ ++
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATE 235 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999888777777 8999999999999999998765555444443 355666666 68
Q ss_pred CcHHHHHHhhcCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~ 286 (288)
+..+++.+|++||+|+|
T Consensus 236 ~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 236 DRHEGISAFLEKRTPDF 252 (255)
T ss_pred HHHHHHHHHhccCCCCC
Confidence 99999999999999987
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=376.46 Aligned_cols=249 Identities=25% Similarity=0.367 Sum_probs=219.7
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
..+.+.++. +++|++|+||||+++|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|.|++++... .
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~--- 78 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---G--- 78 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---c---
Confidence 345688887 789999999999999999999999999999999999999999999999999999999987531 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+...+++++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 158 (261)
T PRK08138 79 AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK 158 (261)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence 1122334456788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..++.++..+|+.++............ +.+.+..++
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 238 (261)
T PRK08138 159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLF 238 (261)
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888777777 7899999999999999998765554444333 345566666
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 239 ~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 239 DSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred cCHHHHHHHHHHhcCCCCCC
Confidence 6889999999999999997
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=375.99 Aligned_cols=249 Identities=22% Similarity=0.296 Sum_probs=216.3
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|.|++++.... ....+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTP-GGAPDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcc-ccchhHHHHH
Confidence 467889999999999999999999999999999999999998 99999999999999999999875311 0111111122
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
...+..++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 22234577889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCc
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDT 271 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 271 (288)
++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +.+.+..++ +++.
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~ 238 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADY 238 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhH
Confidence 999999999999999999999999988877777 7999999999999999998765554444433 345566666 7899
Q ss_pred HHHHHHhhcCCCCCC
Q 023017 272 VEEIIDSLDDVAPSY 286 (288)
Q Consensus 272 ~e~~~~~lekr~p~~ 286 (288)
.+++.+|+|||+|+|
T Consensus 239 ~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 239 AEGVTAFLDKRNPQF 253 (256)
T ss_pred HHHHHHHHcCCCCCC
Confidence 999999999999998
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=377.07 Aligned_cols=247 Identities=20% Similarity=0.226 Sum_probs=213.7
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++++++|++||||||+++|++|.+|+.+|.++++.+++|+++|+|||+|.|+.||+|.|++++....... ...+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~----~~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG----GFPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc----hhhh
Confidence 467889999999999999999999999999999999999999999999999999999999999875421111 1112
Q ss_pred HHHHHH-HHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 116 FRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 116 ~~~~~~-l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
.....+ +...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. ++++
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 111222 23357899999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~ 270 (288)
+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...........+. ...+..++ +++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 236 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSED 236 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999888777777 89999999999999999987655555444433 45666677 678
Q ss_pred cHHHHHHhhcCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSY 286 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~ 286 (288)
..+++.+|++||+|+|
T Consensus 237 ~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 237 AKEGVQAFLERRPARF 252 (255)
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999999999999987
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=379.45 Aligned_cols=251 Identities=21% Similarity=0.290 Sum_probs=217.1
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhcc---CC----
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ---GK---- 108 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~---~~---- 108 (288)
+..+.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++...... .+
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 44556899999999999999999999999999999999999999999999999999999999987542110 01
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
......+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 11223334455678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVD 264 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~ 264 (288)
. +++++++|++++|+||+++||||+++|+ +++.+.+.++ ++++..+|.+++.+|+.++............. ...+.
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 249 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNS 249 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999995 7788777777 89999999999999999987655544444433 44555
Q ss_pred HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.++ +++..|++.+|+|||+|+|
T Consensus 250 ~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 250 AMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred HhccChhHHHHHHHHhccCCCCC
Confidence 566 7899999999999999997
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=375.99 Aligned_cols=250 Identities=27% Similarity=0.430 Sum_probs=222.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... +...
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~ 78 (260)
T PRK05809 3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE 78 (260)
T ss_pred cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence 56789999999999999999999999999999999999999999999999999999 999999999987532 1122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+.....+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233444456788889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.+++..........+ +...+..++
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 238 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS 238 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998888877777 7999999999999999998765555544443 355666666
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 239 ~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 239 TEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred CHHHHHHHHHHhcCCCCCC
Confidence 6799999999999999998
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=376.02 Aligned_cols=248 Identities=24% Similarity=0.339 Sum_probs=220.0
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
++.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++... ........
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~~ 78 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSV---TEAEQATE 78 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcc---CchhhHHH
Confidence 68899999999999999985 999999999999999999999999999999999999999999987532 11122233
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
+....++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK07658 79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 445567788899999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~ 270 (288)
+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...........+ +...+..++ +++
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (257)
T PRK07658 159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSED 238 (257)
T ss_pred HHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999988877777 7999999999999999998765544444433 355666776 689
Q ss_pred cHHHHHHhhcCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSY 286 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~ 286 (288)
..+++.+|+|||+|+|
T Consensus 239 ~~egi~af~~kr~p~~ 254 (257)
T PRK07658 239 AKEGVQAFLEKRKPSF 254 (257)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 9999999999999997
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-53 Score=376.19 Aligned_cols=251 Identities=24% Similarity=0.282 Sum_probs=216.0
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.... ..+ ...
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~-~~~ 81 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKP-PGD-SFK 81 (263)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhcc-ccc-hhh
Confidence 356899999999999999999999999999999999999999999999999999999999999999876421 111 111
Q ss_pred HH-H-HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 113 KD-F-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 113 ~~-~-~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
.. + ...+.. +.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 82 DGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 11 1 112222 3347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++......+...... ...+..++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 240 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVF 240 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988777777 89999999999999999987655554444433 45566666
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 241 ~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 241 LSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred cCccHHHHHHHHHccCCCCC
Confidence 6899999999999999997
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=378.89 Aligned_cols=254 Identities=22% Similarity=0.296 Sum_probs=219.1
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
|++|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++............
T Consensus 7 ~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PRK09120 7 WDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ 86 (275)
T ss_pred cccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999987432111111112
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+....+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~ 166 (275)
T PRK09120 87 ERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDAL 166 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHH
Confidence 22333456778889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H--HHHHHHc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I--DIVDKCF 267 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~--~~~~~~~ 267 (288)
+|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|.+++.+|+.++............. . .....++
T Consensus 167 ~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 246 (275)
T PRK09120 167 YYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSL 246 (275)
T ss_pred HHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888777 89999999999999999987765555444332 1 2233445
Q ss_pred -Cc-CcHHHHHHhhcCCCCCC
Q 023017 268 -GL-DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~-~~~e~~~~~lekr~p~~ 286 (288)
++ |..+++.+|++||..++
T Consensus 247 ~~~~d~~eg~~afl~kr~~~~ 267 (275)
T PRK09120 247 DPEGGREEGLKQFLDDKSYKP 267 (275)
T ss_pred CCHHHHHHHHHHHHhcccCCc
Confidence 55 78999999999988655
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=377.31 Aligned_cols=255 Identities=19% Similarity=0.253 Sum_probs=221.9
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCcccccCChhhHHHhhccC--C
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP-NIGFVSMKGSGRAFCAGGDIVSLYHFMNQG--K 108 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~-~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~--~ 108 (288)
+++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||+|.|++||+|.|++++....... .
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 3668999999999999999999999999999999999999999876 499999999999999999999875321100 0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
......+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 01122334456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~ 265 (288)
. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..++.++..+|+.++............ +...+..
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~ 241 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRI 241 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999988877777 7999999999999999998765554444443 3556666
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ ++|..+++.+|+|||+|+|
T Consensus 242 ~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 242 AGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred HhcChhHHHHHHHHhcCCCCCC
Confidence 76 6899999999999999998
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=369.50 Aligned_cols=247 Identities=25% Similarity=0.338 Sum_probs=215.1
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
......+++|+.|+||||+++|+++..++.+|.+++..+++|+.++++||||.|+.||+|+|++++.... ..+..
T Consensus 38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~---~~~~~-- 112 (290)
T KOG1680|consen 38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDE---FQDVS-- 112 (290)
T ss_pred eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcc---ccccc--
Confidence 3445567899999999999999999999999999999999999999999999999999999999986521 01100
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
...+.+.+..+.+.+||+||+|||+|+|||++|++.||+|||+++|+|++|+.++|++|.+|++.+|+|.+|.. |+++
T Consensus 113 -~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~ 191 (290)
T KOG1680|consen 113 -DGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEM 191 (290)
T ss_pred -cccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHH
Confidence 11122334445589999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~ 270 (288)
++||++++|+||+++||||+|+|.+++..++.++ .++++.||..++..|+.++...+..+.+.+.. ..++...| ..+
T Consensus 192 ~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d 271 (290)
T KOG1680|consen 192 ILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATED 271 (290)
T ss_pred HHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHH
Confidence 9999999999999999999999999977767677 89999999999999999998766665555543 56666666 589
Q ss_pred cHHHHHHhhcCCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~~ 287 (288)
..|++.+|.|||+|+|.
T Consensus 272 ~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 272 RLEGMTAFAEKRKPKFS 288 (290)
T ss_pred HHHHHHHhcccCCcccc
Confidence 99999999999999983
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=376.12 Aligned_cols=252 Identities=23% Similarity=0.352 Sum_probs=217.5
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++........ ...
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~ 81 (262)
T PRK05995 3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD-DEN 81 (262)
T ss_pred CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-hhh
Confidence 5679999999999999999999999999999999999999999999999999999999999999998753211111 111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
......+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ +++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence 12234566788899999999999999999999999999999999999999999999999999887654 88999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhH-HH-HHHHHHHHc-
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSV-IH-RIDIVDKCF- 267 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~-~~-~~~~~~~~~- 267 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++.......... .+ +...+..++
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~ 240 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRA 240 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998898888777 89999999999999999987644444333 22 244555566
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 241 ~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 241 TEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred CHHHHHHHHHHhcCCCCCC
Confidence 6789999999999999998
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=375.92 Aligned_cols=249 Identities=17% Similarity=0.235 Sum_probs=213.9
Q ss_pred CcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 34 ~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
..+.+++ +++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++.... ......
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYG-YIDDSG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhcc-ccchhh
Confidence 3578888 899999999999999999999999999999999999999999999999 7999999999764210 001111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
... ..+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 81 ~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 VHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred HHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 111 1234677789999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...... .... .+...+..++
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~ 237 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNADCDGQ-AGLQELAGNATMLFYM 237 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888877777 8999999999999999998754322 2222 2234555556
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 238 ~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 238 TEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred CccHHHHHHHHhccCCCCC
Confidence 7899999999999999998
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=373.48 Aligned_cols=242 Identities=23% Similarity=0.338 Sum_probs=215.4
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++... .......+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999984 899999999987531 122333455566
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~ 198 (288)
+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+++|+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 7788899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHH
Q 023017 199 KLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEI 275 (288)
Q Consensus 199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~ 275 (288)
+++++||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+..... +...+..++ +++..+++
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~ 237 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGL 237 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999988777777 8999999999999999998765554444443 355666666 78999999
Q ss_pred HHhhcCCCCCC
Q 023017 276 IDSLDDVAPSY 286 (288)
Q Consensus 276 ~~~lekr~p~~ 286 (288)
.+|+|||+|+|
T Consensus 238 ~af~ekr~p~~ 248 (251)
T PLN02600 238 AAFAEKRKPVY 248 (251)
T ss_pred HHHhcCCCCCC
Confidence 99999999997
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=373.41 Aligned_cols=246 Identities=22% Similarity=0.301 Sum_probs=213.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++++.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+.||+|.|++++... .....
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~- 77 (254)
T PRK08252 2 SDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG---ERPSI- 77 (254)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc---cchhh-
Confidence 45789999999999999999999999999999999999999999999999999999999999999987531 11111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
....+..++ ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 78 --~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 153 (254)
T PRK08252 78 --PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAM 153 (254)
T ss_pred --hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHH
Confidence 111122222 2479999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+....+ +...+..++ +
T Consensus 154 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~ 233 (254)
T PRK08252 154 ELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTS 233 (254)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988777777 8999999999999999998765444444333 344555666 7
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 234 ~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 234 ADAKEGATAFAEKRAPVW 251 (254)
T ss_pred chHHHHHHHHhcCCCCCC
Confidence 899999999999999998
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=374.01 Aligned_cols=251 Identities=21% Similarity=0.325 Sum_probs=220.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++++.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.......+....
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 35788999999999999999999999999999999999999999999999999999999999999987642211222222
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT 160 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence 23445567788899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+..+ ++++..+|.++..+|+.++......++..... ...+..++ +
T Consensus 161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 240 (255)
T PRK07260 161 HLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFK 240 (255)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988877777 89999999999999999987655555444433 45666666 6
Q ss_pred cCcHHHHHHhhcCCC
Q 023017 269 LDTVEEIIDSLDDVA 283 (288)
Q Consensus 269 ~~~~e~~~~~lekr~ 283 (288)
++..+++.+|++||+
T Consensus 241 ~~~~e~~~af~~kr~ 255 (255)
T PRK07260 241 EDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999985
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=374.47 Aligned_cols=249 Identities=24% Similarity=0.346 Sum_probs=219.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
..+.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... ...+
T Consensus 6 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~---~~~~ 82 (262)
T PRK06144 6 STDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAF---STAE 82 (262)
T ss_pred CCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhc---cchh
Confidence 455799999999999999999999999999999999999999999999999999998 799999999987542 1112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEeccccc-ccccCCCchHHHHhhcchHH
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL-IGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~l~~~~g~~ 189 (288)
....+.+.+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~ 162 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA 162 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence 22234455677888899999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++......+. ...+.+..++
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~---~~~~~~~~~~ 239 (262)
T PRK06144 163 RVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALRRLRREGLP---DGDDLIRMCY 239 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHH---HHHHHHHHHh
Confidence 99999999999999999999999999999988877777 899999999999999999866433322 2234555666
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|+|||+|+|
T Consensus 240 ~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 240 MSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred cChHHHHHHHHHhcCCCCCC
Confidence 6899999999999999987
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=375.72 Aligned_cols=252 Identities=19% Similarity=0.277 Sum_probs=216.8
Q ss_pred CCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|+++.++++ ++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.... ..+...
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 82 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA-DLDYNT 82 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc-cccchh
Confidence 678999985 789999999999999999999999999999999999999999999999999999999875321 101111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.......+++++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++ ++++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence 11223345678888999999999999999999999999999999999999999999999999987765 588999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH--HHHHHHHHc
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH--RIDIVDKCF 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~--~~~~~~~~~ 267 (288)
++++++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++............ ....+..++
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIR 241 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888877777 8999999999999999998776555444332 234455566
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|+|||+|+|
T Consensus 242 ~s~d~~e~~~af~~kr~p~~ 261 (265)
T PRK05674 242 VSAEGQEGLRAFLEKRTPAW 261 (265)
T ss_pred cCHHHHHHHHHHHccCCCCC
Confidence 6899999999999999987
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=373.90 Aligned_cols=248 Identities=22% Similarity=0.310 Sum_probs=219.7
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.++.++.+++|++|+||||++.|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|.|++++... .+.....
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~ 81 (260)
T PRK07659 6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSS---NDESKFD 81 (260)
T ss_pred ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhc---cCchhHH
Confidence 4699999999999999999999999999999999999999 58899999999999999999999987532 1122334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~ 161 (260)
T PRK07659 82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ 161 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence 5556677888899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~ 269 (288)
|+++|++++|+||+++||||+++ ++++.+.+.++ ++++..++.++..+|+.++......+...... .+.+...+ ++
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~ 240 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTA 240 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999 77787777777 89999999999999999987655555444333 45555666 68
Q ss_pred CcHHHHHHhhcCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~ 286 (288)
+..+++.+|++||+|+|
T Consensus 241 ~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 241 DHKEGIRAFLEKRLPVF 257 (260)
T ss_pred hHHHHHHHHhcCCCCCC
Confidence 99999999999999998
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-53 Score=372.97 Aligned_cols=252 Identities=22% Similarity=0.323 Sum_probs=216.3
Q ss_pred CCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
++.+.++++ ++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...... +...
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~ 81 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA-DRAT 81 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhccc-chhh
Confidence 456888886 68999999999999999999999999999999999999999999999999999999987532111 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a 160 (262)
T PRK07468 82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHH
Confidence 12233445678889999999999999999999999999999999999999999999999999999988855 458998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|.++..+|+.+++......+... .+...+..++
T Consensus 161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 240 (262)
T PRK07468 161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWE 240 (262)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998888877776 899999999999999999876444333333 3355666666
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 241 s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 241 TEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred CHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999998
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=377.92 Aligned_cols=254 Identities=20% Similarity=0.242 Sum_probs=217.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC-----
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG----- 107 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~----- 107 (288)
++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.......
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999999864211000
Q ss_pred -------C-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchH
Q 023017 108 -------K-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS 179 (288)
Q Consensus 108 -------~-~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~ 179 (288)
. ......+....+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0 01112233334567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC-CHHHHHHHHHHhhccCC--CChh
Q 023017 180 FYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD-DPSVIEACLEKYSDLVY--PDKN 254 (288)
Q Consensus 180 ~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~-~~~~~~~~k~~l~~~~~--~~~~ 254 (288)
++|++++|.. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++.. +|.++..+|+.++.... ....
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~ 242 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMMWRMAGADHPME 242 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH
Confidence 9999999999 99999999999999999999999999998888777777 788885 89999999999987642 2223
Q ss_pred hHHHHHHHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 255 SVIHRIDIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 255 ~~~~~~~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
....+...+..++ +++..+++.+|++||+|+|
T Consensus 243 ~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f 275 (296)
T PRK08260 243 AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVF 275 (296)
T ss_pred HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCC
Confidence 3333444556666 6899999999999999998
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=370.76 Aligned_cols=246 Identities=20% Similarity=0.302 Sum_probs=216.3
Q ss_pred CCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+.++.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++... +..
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~ 80 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQA 80 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chh
Confidence 34677775 688999999999999999999999999999999999999999999999 799999999987532 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 23345566678888999999999999999999999999999999999999999999999998 8888899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++......+..... +...+..++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 239 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAF 239 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888777 8999999999999999998765555544433 345566666
Q ss_pred -CcCcHHHHHHhhcCCC
Q 023017 268 -GLDTVEEIIDSLDDVA 283 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~ 283 (288)
++|..+++.+|+|||+
T Consensus 240 ~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 240 LTGEPQRHMAAFLNRKR 256 (256)
T ss_pred cChHHHHHHHHHHhhcC
Confidence 6899999999999985
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=374.31 Aligned_cols=255 Identities=22% Similarity=0.307 Sum_probs=218.7
Q ss_pred CCCcEEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~-~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.++.|.+++++ +|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++..........
T Consensus 3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06210 3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR 82 (272)
T ss_pred CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence 35679999998 99999999999999999999999999999999999999999999999999999999875421100000
Q ss_pred --HHHHH----HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhh
Q 023017 111 --ECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184 (288)
Q Consensus 111 --~~~~~----~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 184 (288)
....+ ...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 162 (272)
T PRK06210 83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPR 162 (272)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHh
Confidence 00111 122455677899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC-CHHHHHHHHHHhhccCCCChhhHHH-HH
Q 023017 185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD-DPSVIEACLEKYSDLVYPDKNSVIH-RI 260 (288)
Q Consensus 185 ~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~-~~~~~~~~k~~l~~~~~~~~~~~~~-~~ 260 (288)
++|.. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++.. +|.++..+|+.+++.....+....+ +.
T Consensus 163 ~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~ 242 (272)
T PRK06210 163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARAN 242 (272)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 99999 99999999999999999999999999998888877777 788875 9999999999998775555544443 34
Q ss_pred HHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 261 DIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 261 ~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
..+..++ +++..|++.+|++||+|.|
T Consensus 243 ~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 243 REMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred HHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 5555665 7899999999999999997
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=370.79 Aligned_cols=248 Identities=23% Similarity=0.263 Sum_probs=214.0
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++.... ....
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~--~~~~ 79 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGG--KRGW 79 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcC--cchh
Confidence 356789999999999999999999999999999999999999999999999999998 7999999999875321 1111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
. ...+..+. .+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 80 ~----~~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 80 P----ESGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h----hHHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 1 11122233 34589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHH---HHHHH
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI---DIVDK 265 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~---~~~~~ 265 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++.............. ..+..
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 234 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEA 234 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777 899999999999999999876555554444322 23455
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ +++..+++.+|++||+|+|
T Consensus 235 ~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 235 RRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred HhcCccHHHHHHHHHccCCCCC
Confidence 66 6899999999999999987
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=369.92 Aligned_cols=247 Identities=21% Similarity=0.314 Sum_probs=215.1
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
..+.|.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.... ...
T Consensus 7 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~-- 83 (265)
T PLN02888 7 SENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVF-KGD-- 83 (265)
T ss_pred CCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhc-cch--
Confidence 345788886 7899999999999999999999999999999999999999999999999999999999865321 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
.. ....+++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 84 -~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 159 (265)
T PLN02888 84 -VK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR 159 (265)
T ss_pred -hh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence 11 1124566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++............. ...+..++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 239 (265)
T PLN02888 160 AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYY 239 (265)
T ss_pred HHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888877777 89999999999999999987655555444433 34445543
Q ss_pred ---CcCcHHHHHHhhcCCCCC
Q 023017 268 ---GLDTVEEIIDSLDDVAPS 285 (288)
Q Consensus 268 ---~~~~~e~~~~~lekr~p~ 285 (288)
+++..+++.+|+|||+||
T Consensus 240 ~~~~~d~~e~~~af~ekr~~~ 260 (265)
T PLN02888 240 NGMTKEQFQKMQEFIAGRSSK 260 (265)
T ss_pred ccCCHHHHHHHHHHHhcCCCC
Confidence 689999999999999987
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=369.79 Aligned_cols=249 Identities=24% Similarity=0.345 Sum_probs=222.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
.+.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++.... .. .
T Consensus 4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~--~~-~-- 78 (259)
T PRK06688 4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP--PK-P-- 78 (259)
T ss_pred CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC--cc-h--
Confidence 346899999999999999999999999999999999999999999999999999999999999999876421 11 1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+++++.++.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~ 158 (259)
T PRK06688 79 PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAA 158 (259)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHH
Confidence 33455667888899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+++++|++++|+||+++||||+++|++++.+.+.++ ++++..++.++..+|+.++.......+.... +...+..++ +
T Consensus 159 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 238 (259)
T PRK06688 159 EMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRT 238 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998888877777 7999999999999999998765555544443 355566666 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 239 ~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 239 PDFREGATAFIEKRKPDF 256 (259)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 899999999999999997
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=372.52 Aligned_cols=255 Identities=19% Similarity=0.251 Sum_probs=215.8
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC---
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG--- 107 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~--- 107 (288)
.++.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.......
T Consensus 7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 86 (276)
T PRK05864 7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLT 86 (276)
T ss_pred CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccccc
Confidence 455688887 7899999999999999999999999999999999999999999999999999999999864211000
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccC-CCchHHHHhhcc
Q 023017 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLP 186 (288)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~~~~ 186 (288)
...........+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 87 RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence 1111122334556778889999999999999999999999999999999999999999999999997 788899999999
Q ss_pred hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCC-ChhhHHH-HHH-
Q 023017 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYP-DKNSVIH-RID- 261 (288)
Q Consensus 187 g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~-~~~~~~~-~~~- 261 (288)
|.. +++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++..... .+..... +..
T Consensus 167 G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~ 246 (276)
T PRK05864 167 GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLG 246 (276)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 999 99999999999999999999999999999988877777 899999999999999999865432 3333322 221
Q ss_pred -HHHHHcCcCcHHHHHHhhcCCCCCC
Q 023017 262 -IVDKCFGLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 262 -~~~~~~~~~~~e~~~~~lekr~p~~ 286 (288)
.+..+.+++..+++.+|++||+|+|
T Consensus 247 ~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 247 QLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred HHHHhccChhHHHHHHHHhccCCCCC
Confidence 2233337899999999999999997
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=369.68 Aligned_cols=248 Identities=21% Similarity=0.320 Sum_probs=215.2
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.+.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... ... .
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~--~~~-~- 76 (261)
T PRK03580 2 SESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEG--EAP-D- 76 (261)
T ss_pred CceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhcc--Ccc-h-
Confidence 446899999999999999995 6999999999999999999999999999999999 799999999987531 111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+.......+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 -ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred -hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11112223456788999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H----HHHH
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I----DIVD 264 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~----~~~~ 264 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+...... . ..+.
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 235 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYP 235 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999998888777 79999999999999999987655544443332 1 2455
Q ss_pred HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.++ +++..+++.+|+|||+|+|
T Consensus 236 ~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 236 SVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred HHhcCccHHHHHHHHhcCCCCCC
Confidence 666 6899999999999999997
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=371.61 Aligned_cols=251 Identities=16% Similarity=0.245 Sum_probs=215.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|.|++++... .....+
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-~~~~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYG-GYVDDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcc-cccchh
Confidence 356799999999999999999999999999999999999999999999999999999 699999999986421 000111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+ ...+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111 234567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++.... ...... .+...+..++
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~ 246 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFY 246 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877777 89999999999999999987543 233222 2234455555
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 247 ~~~d~~egi~af~~kr~p~~ 266 (273)
T PRK07396 247 MTEEAQEGRNAFNEKRQPDF 266 (273)
T ss_pred cChhHHHHHHHHhCCCCCCC
Confidence 6899999999999999987
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=369.11 Aligned_cols=252 Identities=22% Similarity=0.246 Sum_probs=216.3
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.... ......
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 79 (262)
T PRK07509 1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL 79 (262)
T ss_pred CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence 4678999999999999999999999999999999999999999999999999999999999999999875321 111111
Q ss_pred HHH----HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 112 CKD----FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 112 ~~~----~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
... ....+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 111 1223455677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~ 264 (288)
.. +++++++|++++|+||+++||||+++++ +.+.+.++ ++++..+|.++..+|+.++............ +...+.
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 237 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQI 237 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999954 55666666 8999999999999999998775554444333 345556
Q ss_pred HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.++ +++..+++.+|+|||+|+|
T Consensus 238 ~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 238 RLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred HHhcChhHHHHHHHHhcCCCCCC
Confidence 666 6899999999999999998
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=367.74 Aligned_cols=249 Identities=22% Similarity=0.327 Sum_probs=217.2
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.|.++++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|.|++++.... .....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~--~~~~~ 78 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVI--KGPGD 78 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhcc--CCchh
Confidence 5678999999999999999997 69999999999999999999999999999999999999999999875321 11122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+...+++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+. |+++++++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 23344556678888999999999999999999999999999999999999999999999996 4567899999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+...... ...+..++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 235 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAK 235 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988877777 89999999999999999987655555444433 45555665
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 236 s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 236 TEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred ChHHHHHHHHHhccCCCCC
Confidence 6899999999999999997
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-52 Score=367.10 Aligned_cols=248 Identities=17% Similarity=0.212 Sum_probs=216.2
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-C-CcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-G-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~-g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.+++|+ +|+|||||. | ++||+|.|++++... ..+
T Consensus 3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~--~~~-- 77 (261)
T PRK11423 3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSG--GRD-- 77 (261)
T ss_pred ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhc--ccc--
Confidence 557899999999999999999999999999999999999999887 999999996 3 799999999987531 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
...+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 123344566788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC-CCh-hhHH-HHHHHHHH
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY-PDK-NSVI-HRIDIVDK 265 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~-~~~-~~~~-~~~~~~~~ 265 (288)
+++++++|++++|+||+++||||+|+|++++++.+.++ ++++..+|.++..+|+.++.... ... .... .+......
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRA 236 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999998898888777 89999999999999999986432 222 2222 23445566
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ +++..+++.+|++||+|+|
T Consensus 237 ~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 237 VYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred HhCChhHHHHHHHHhccCCCCC
Confidence 66 6899999999999999997
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-52 Score=364.94 Aligned_cols=242 Identities=20% Similarity=0.268 Sum_probs=210.4
Q ss_pred CcEEEEeeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 34 NQVLVEGKAN---SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 34 ~~v~~~~~~~---v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+.|.++++++ |++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.... . +.
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~-~-~~- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAA-M-GG- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcc-c-cc-
Confidence 3688888874 9999999999999999999999999999999999999999999999999999999875321 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
..+...+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|..
T Consensus 80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 12233455678889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++... ..+..... +.+.+..++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~ 236 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARL 236 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988877777 8999999999999999998653 23333333 234455555
Q ss_pred -CcCcHHHHHHhhcC
Q 023017 268 -GLDTVEEIIDSLDD 281 (288)
Q Consensus 268 -~~~~~e~~~~~lek 281 (288)
+++..+++.+|+||
T Consensus 237 ~~~~~~e~~~af~e~ 251 (251)
T PRK06023 237 KSAEARAAFEAFMRR 251 (251)
T ss_pred CCHHHHHHHHHHhcC
Confidence 68999999999985
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=373.86 Aligned_cols=251 Identities=17% Similarity=0.251 Sum_probs=215.9
Q ss_pred CCCcEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCC
Q 023017 32 LCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 32 ~~~~v~~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 108 (288)
.++.|.+++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... ....
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~-~~~~ 141 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKD-GYVG 141 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcc-cccc
Confidence 466789988 589999999999999999999999999999999999999999999999 899999999976421 0011
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
.+....+ ...+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|.+|++++|++++|.
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~ 219 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ 219 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 1111111 12356778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~ 265 (288)
. +++|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|.+++.+|+.++..... ......+ ...+..
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 298 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLL 298 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999998887777 899999999999999999876433 2222222 345556
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ +++..|++.+|+|||+|+|
T Consensus 299 ~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 299 FYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred HhcCHHHHHHHHHHhccCCCCC
Confidence 66 6899999999999999998
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=363.07 Aligned_cols=249 Identities=27% Similarity=0.403 Sum_probs=217.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
+..+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.. ..+....
T Consensus 4 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~~ 80 (257)
T COG1024 4 YETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNAA 80 (257)
T ss_pred CCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999864 1122222
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 81 ENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 35667777899999999999999999999999999999999999999999999999999999889999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF- 267 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~- 267 (288)
+|++||+.++++||+++||||+++++ +++.+.+.++ ++++. +|.++...|+.++.......+..... ...+...+
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFS 239 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999986 5888888888 66666 99999999999987755444444333 33344344
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..|++.+|++ |+|.|
T Consensus 240 ~~d~~eg~~a~~~-r~p~~ 257 (257)
T COG1024 240 SEDFREGVRAFLE-RKPVF 257 (257)
T ss_pred ChhHHHHHHHHHc-cCCCC
Confidence 6899999999999 99986
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=364.04 Aligned_cols=247 Identities=22% Similarity=0.236 Sum_probs=210.2
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|.+.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++... .. ..
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~--~~--~~ 76 (254)
T PRK08259 1 MSMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTG--RG--NR 76 (254)
T ss_pred CCceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcc--cc--hh
Confidence 345789999999999999999999999999999999999999999999999999999999999999987532 11 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.... ....+...+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|.+|++++|++++|.. +
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 1100 001112233479999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHcC
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCFG 268 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~~ 268 (288)
++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......+...... ...+...+.
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~ 234 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA 234 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998887777 79999999999999999987655555444332 333444555
Q ss_pred cCcHHHHHHhhcCCCC
Q 023017 269 LDTVEEIIDSLDDVAP 284 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p 284 (288)
++..|++.+|+||+.+
T Consensus 235 ~d~~egi~af~~~~~~ 250 (254)
T PRK08259 235 AEALEGAARFAAGAGR 250 (254)
T ss_pred hHHHHHHHHHHhhhcc
Confidence 9999999999987654
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=362.28 Aligned_cols=252 Identities=21% Similarity=0.240 Sum_probs=217.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
...+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.... ....+..
T Consensus 5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~ 83 (260)
T PRK07827 5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGG-GDPYDAA 83 (260)
T ss_pred CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcc-cCchhHH
Confidence 346889999999999999999999999999999999999999999999999999999999999999875310 0111122
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~ 192 (288)
..+...+.+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++++++..+++
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~ 163 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR 163 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence 33455667888999999999999999999999999999999999999999999999999999999999999986645999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~ 269 (288)
++++|++++|+||+++||||++++ ++++.+..+ ++++..++.++..+|+.+++..........+. ......++ ++
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVSD 241 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999975 477777777 89999999999999999988766555444433 44556666 68
Q ss_pred CcHHHHHHhhcCCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~~ 287 (288)
+..+++.+|++||+|+|.
T Consensus 242 ~~~~~~~af~~kr~p~~~ 259 (260)
T PRK07827 242 EAREGMTAFLQKRPPRWA 259 (260)
T ss_pred hHHHHHHHHhcCCCCCCC
Confidence 999999999999999984
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=363.26 Aligned_cols=244 Identities=21% Similarity=0.355 Sum_probs=213.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... .+ .
T Consensus 1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~--~~--~ 76 (249)
T PRK05870 1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAP--GR--P 76 (249)
T ss_pred CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccc--cc--c
Confidence 4557899999999999999999999999999999999999999999999999999999999999999876421 11 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.......+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 123344556677789999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC-CChhhHHH-HHHHHHHHc
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY-PDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~-~~~~~~~~-~~~~~~~~~ 267 (288)
++++++|++++|+||+++||||+++ +++.+.+.++ ++++..+|.+++.+|+.++.... ..++.... +...+..++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~ 234 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASV 234 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 5677777777 89999999999999999987655 44544433 345566666
Q ss_pred -CcCcHHHHHHhhcC
Q 023017 268 -GLDTVEEIIDSLDD 281 (288)
Q Consensus 268 -~~~~~e~~~~~lek 281 (288)
+++..+++.+|+|+
T Consensus 235 ~~~d~~eg~~af~~~ 249 (249)
T PRK05870 235 QSPEFAARLAAAQRR 249 (249)
T ss_pred cChhHHHHHHHHhcC
Confidence 67899999999985
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=359.39 Aligned_cols=241 Identities=24% Similarity=0.340 Sum_probs=210.4
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++... ....+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~-------~~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD-------FAIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh-------hHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999987531 11223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHh
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL 195 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l 195 (288)
.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999966999999
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcH
Q 023017 196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTV 272 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 272 (288)
+|++++|+||+++||||++ +++.+.+.++ ++++..||.++..+|+.++......++...+ +.+.+..++ +++..
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~ 231 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFK 231 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHH
Confidence 9999999999999999964 3455556566 8999999999999999998765544444433 345566666 68999
Q ss_pred HHHHHhhcCCCCCC
Q 023017 273 EEIIDSLDDVAPSY 286 (288)
Q Consensus 273 e~~~~~lekr~p~~ 286 (288)
+++.+|++||+|+|
T Consensus 232 eg~~af~~kr~p~~ 245 (248)
T PRK06072 232 EGISSFKEKREPKF 245 (248)
T ss_pred HHHHHHhcCCCCCC
Confidence 99999999999997
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=360.20 Aligned_cols=241 Identities=20% Similarity=0.256 Sum_probs=207.5
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|.|++++.. .....+
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence 678889999999999997 699999999999999999999999999999999999999999997531 111223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|.. +++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence 4455678888999999999999999999999999999999999999999999999999974 578999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH--HHHHHHHHHc-CcC
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI--HRIDIVDKCF-GLD 270 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~--~~~~~~~~~~-~~~ 270 (288)
++|++++|+||+++||||+++|+.+ ....+.+ ++++..||.+++.+|+.++......++... .+...+..++ +++
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~-~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d 232 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE-NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHD 232 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHh
Confidence 9999999999999999999998643 3334444 689999999999999999876555544433 2234556666 689
Q ss_pred cHHHHHHhhcCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSY 286 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~ 286 (288)
..+++.+|+|||+|.|
T Consensus 233 ~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 233 AVEGLNAFLEKRPALW 248 (251)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 9999999999999987
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=359.64 Aligned_cols=239 Identities=22% Similarity=0.211 Sum_probs=206.8
Q ss_pred EeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHH
Q 023017 39 EGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT 118 (288)
Q Consensus 39 ~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 118 (288)
+++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++... ..........+.
T Consensus 7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence 457899999999997 5999999999999999999999999999999999999999999987531 111222223344
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcC
Q 023017 119 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 197 (288)
Q Consensus 119 ~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g 197 (288)
+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|.. +++|+++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 5677888999999999999999999999999999999999999999999999985 4567899999999 99999999
Q ss_pred CCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHH
Q 023017 198 AKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEE 274 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~ 274 (288)
++++|+||+++||||+++|++++++.+.++ ++++..+|.+++.+|+.++......+..... +......++ ++|..|+
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg 239 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEH 239 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHH
Confidence 999999999999999999999998888777 8999999999999999998765544444433 345555666 6899999
Q ss_pred HHHhhcCCCC
Q 023017 275 IIDSLDDVAP 284 (288)
Q Consensus 275 ~~~~lekr~p 284 (288)
+.+|+|||+|
T Consensus 240 ~~af~ekr~p 249 (249)
T PRK07938 240 RDAFVEKRKA 249 (249)
T ss_pred HHHHHhcCCC
Confidence 9999999988
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=362.77 Aligned_cols=241 Identities=30% Similarity=0.493 Sum_probs=220.2
Q ss_pred EEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHH
Q 023017 37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF 116 (288)
Q Consensus 37 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 116 (288)
.++.+|+|++|+||+|++.|++|.+++.+|.++|+.+++|+++|+||++|.|+.||+|.|++++... +......+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 3789999999999999999999999999999999999999999999999999999999999998764 445667788
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHh
Q 023017 117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 195 (288)
Q Consensus 117 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l 195 (288)
+.++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++++++
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcH
Q 023017 196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTV 272 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 272 (288)
+|++++|+||+++||||+++|++++.+.+..+ ++++..++.+++.+|+.+++........... +...+..++ +++..
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQ 236 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred ccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999988888777 8999999999999999999864444444333 356777777 78999
Q ss_pred HHHHHhhcC
Q 023017 273 EEIIDSLDD 281 (288)
Q Consensus 273 e~~~~~lek 281 (288)
|++.+|+||
T Consensus 237 e~~~~f~eK 245 (245)
T PF00378_consen 237 EGIAAFLEK 245 (245)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCc
Confidence 999999998
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=375.15 Aligned_cols=253 Identities=36% Similarity=0.637 Sum_probs=217.6
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++.......+.....
T Consensus 4 ~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (342)
T PRK05617 4 EVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAAD 83 (342)
T ss_pred eEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHH
Confidence 588999999999999999999999999999999999999999999999999999 8999999999875421111111111
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL 193 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l 193 (288)
.++....+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++|
T Consensus 84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~l 163 (342)
T PRK05617 84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYL 163 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHHH
Confidence 34445557888899999999999999999999999999999999999999999999999999999999999988449999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHH--------------------------------------------------
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLI-------------------------------------------------- 223 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~-------------------------------------------------- 223 (288)
+++|+.++|+||+++||||+++|++++++.
T Consensus 164 lltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 243 (342)
T PRK05617 164 ALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVED 243 (342)
T ss_pred HHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999887654
Q ss_pred ------------HHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcCcHHHHHHhh-cC-CCCCC
Q 023017 224 ------------EEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLDTVEEIIDSL-DD-VAPSY 286 (288)
Q Consensus 224 ------------~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~~~~~l-ek-r~p~~ 286 (288)
+.++ ++++..+|.+++.+|+.+++............ ...+..++ ++|..+++.+|+ +| |.|+|
T Consensus 244 ~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~ 323 (342)
T PRK05617 244 IIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKW 323 (342)
T ss_pred HHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCC
Confidence 5555 89999999999999999987655555544433 45555666 789999999997 76 99988
Q ss_pred C
Q 023017 287 A 287 (288)
Q Consensus 287 ~ 287 (288)
.
T Consensus 324 ~ 324 (342)
T PRK05617 324 S 324 (342)
T ss_pred C
Confidence 4
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=375.99 Aligned_cols=254 Identities=69% Similarity=1.132 Sum_probs=214.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
.+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+.||+|+|++++......+.....
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999988643212222223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~ 192 (288)
..++...+++.+.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 44555566678889999999999999999999999999999999999999999999999999999999999999966999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCcCcH
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (288)
|++||++++|+||+++||||++||++++.+..+.+++++..+|.++..+|+.++............+.+.+..+|+.+..
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~ 275 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV 275 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999986555555889889999999999998765322222333346788899976655
Q ss_pred HH-HHHh---hcCCCCCC
Q 023017 273 EE-IIDS---LDDVAPSY 286 (288)
Q Consensus 273 e~-~~~~---lekr~p~~ 286 (288)
++ +.+| .+||.|+|
T Consensus 276 ~ei~~al~~~~~kr~~~w 293 (401)
T PLN02157 276 EEIIDSLEIEAGRRKDTW 293 (401)
T ss_pred HHHHHHHHhhhcccchHH
Confidence 55 4455 56667765
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-51 Score=366.61 Aligned_cols=254 Identities=16% Similarity=0.206 Sum_probs=214.1
Q ss_pred CCcEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CcccccCChhhHHHh
Q 023017 33 CNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-------RAFCAGGDIVSLYHF 103 (288)
Q Consensus 33 ~~~v~~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-------~~F~aG~Dl~~~~~~ 103 (288)
+.+|.+++ +++|++||||||+++|++|.+|+.+|.++++.+++|+++++|||+|.| ++||+|.|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 44688988 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred ---hccCCh-H--HHHHHHH-HHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEe-CceEEecccccccccCC
Q 023017 104 ---MNQGKL-E--ECKDFFR-TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPD 175 (288)
Q Consensus 104 ---~~~~~~-~--~~~~~~~-~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~ 175 (288)
...... . ....... ...++...+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 000000 0 0011111 12346667889999999999999999999999999999999 69999999999999999
Q ss_pred CchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCCh
Q 023017 176 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDK 253 (288)
Q Consensus 176 ~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~ 253 (288)
+|++++|++++|.. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..++.+++.+|+.++.......
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~ 261 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAFNLTDDGLV 261 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccH
Confidence 99999999999999 99999999999999999999999999999998878777 89999999999999999976544333
Q ss_pred hhHHHHHHHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 254 NSVIHRIDIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.....+.+.+..++ +++..+++.+|+|||+|+|
T Consensus 262 ~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 262 GQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 33333345555666 6899999999999999997
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=354.78 Aligned_cols=235 Identities=21% Similarity=0.331 Sum_probs=205.2
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
+.++++++|++||||||+++|++|.+|+.+|.++++.++++ ++++|||||.|++||+|.|+++... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 57888999999999999999999999999999999999965 8999999999999999999985211 1223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 44556788889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc-CcCc
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF-GLDT 271 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~-~~~~ 271 (288)
++|++++|+||+++||||+|++ ++ .+.++ ++++..+|.++..+|+.++.. ...+... .+.+.+..++ +++.
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~ 225 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDA 225 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchH
Confidence 9999999999999999999965 33 44445 899999999999999999865 3333332 2345666666 6899
Q ss_pred HHHHHHhhcCCCCCC
Q 023017 272 VEEIIDSLDDVAPSY 286 (288)
Q Consensus 272 ~e~~~~~lekr~p~~ 286 (288)
.+++.+|++||+|+|
T Consensus 226 ~eg~~af~~kr~p~~ 240 (243)
T PRK07854 226 IEAQVARIEKRPPKF 240 (243)
T ss_pred HHHHHHHhCCCCCCC
Confidence 999999999999987
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-51 Score=362.67 Aligned_cols=254 Identities=18% Similarity=0.201 Sum_probs=216.1
Q ss_pred CccCCCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CcccccCChhhHHHhh
Q 023017 28 VTDDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG--RAFCAGGDIVSLYHFM 104 (288)
Q Consensus 28 ~~~~~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g--~~F~aG~Dl~~~~~~~ 104 (288)
+.|..++.|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++...
T Consensus 5 ~~~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~- 82 (278)
T PLN03214 5 SPPGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP- 82 (278)
T ss_pred CCCCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc-
Confidence 3445566899998 6999999999985 7999999999999999999999999999999998 699999999987531
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccc-cCCCchHHHHh
Q 023017 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYLS 183 (288)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~l~ 183 (288)
.........+.....+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~ 161 (278)
T PLN03214 83 -KTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMG 161 (278)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHH
Confidence 1111222233344456778899999999999999999999999999999999999999999999999 59899999999
Q ss_pred hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H
Q 023017 184 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I 260 (288)
Q Consensus 184 ~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~ 260 (288)
+++|.. +++|+++|+.++++||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++......++..... .
T Consensus 162 ~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~ 241 (278)
T PLN03214 162 RVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEA 241 (278)
T ss_pred HhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999998888877777 89999999999999999987655444444333 4
Q ss_pred HHHHHHc-CcCcHHHHHHhhcCCCC
Q 023017 261 DIVDKCF-GLDTVEEIIDSLDDVAP 284 (288)
Q Consensus 261 ~~~~~~~-~~~~~e~~~~~lekr~p 284 (288)
..+..++ ++|..+++.+|+||.+.
T Consensus 242 ~~~~~~~~s~d~~egi~aflek~~~ 266 (278)
T PLN03214 242 KGGWKMLSEPSIIKALGGVMERLSS 266 (278)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 4555566 78999999999987554
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=369.44 Aligned_cols=252 Identities=20% Similarity=0.238 Sum_probs=205.9
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhh-HHHh---h-ccC
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS-LYHF---M-NQG 107 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~-~~~~---~-~~~ 107 (288)
++.+.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|+++ +... . ..+
T Consensus 4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999985 2110 0 000
Q ss_pred ChHHHHHH---HH---HHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccc-cccCCCchHH
Q 023017 108 KLEECKDF---FR---TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI-GFHPDAGASF 180 (288)
Q Consensus 108 ~~~~~~~~---~~---~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~-Gl~p~~g~~~ 180 (288)
.......+ .. ....++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++| ++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~ 161 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW 161 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH
Confidence 00001111 01 11235667889999999999999999999999999999999999999999997 8875 2333
Q ss_pred HHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC-CChhhHH
Q 023017 181 YLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY-PDKNSVI 257 (288)
Q Consensus 181 ~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~-~~~~~~~ 257 (288)
+ +++|.. +++|+++|++++|+||+++||||++||++++++.+.++ ++++..+|.+++.+|+.++.... ..+....
T Consensus 162 -~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~ 239 (298)
T PRK12478 162 -L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQ 239 (298)
T ss_pred -H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence 2 458998 99999999999999999999999999999999888888 89999999999999999987544 2233333
Q ss_pred H-HHHHHHHHc-CcCcH--------HHHHHhhcCCCCCC-CC
Q 023017 258 H-RIDIVDKCF-GLDTV--------EEIIDSLDDVAPSY-AY 288 (288)
Q Consensus 258 ~-~~~~~~~~~-~~~~~--------e~~~~~lekr~p~~-~~ 288 (288)
. +...+..++ ++|.. |++.+|+|||+|+| .|
T Consensus 240 ~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~~ 281 (298)
T PRK12478 240 TLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGDY 281 (298)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 3 355666667 45654 59999999999999 66
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=353.81 Aligned_cols=247 Identities=17% Similarity=0.218 Sum_probs=207.1
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++ +++++|||+|.|++||+|.|++++.... ......
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~--~~~~~~ 78 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKP--DAGRAD 78 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhcc--ccchhh
Confidence 567999999999999999999999999999999999999998 3599999999999999999999875421 111111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
......+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~ 157 (255)
T PRK07112 79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH 157 (255)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence 11233446788889999999999999999999999999999999999999999999999999865 56799999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
+++++|++++|+||+++||||+++|+++. ...+.+++++..+|.++..+|+.++.. ......... +......++ ++
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~-~~~~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~ 235 (255)
T PRK07112 158 YMTLMTQPVTAQQAFSWGLVDAYGANSDT-LLRKHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFADP 235 (255)
T ss_pred HHHHhCCcccHHHHHHcCCCceecCcHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcCh
Confidence 99999999999999999999999997653 223334899999999999999999764 223333332 344555666 68
Q ss_pred CcHHHHHHhhcCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~ 286 (288)
+..+++.+|++||+|+|
T Consensus 236 ~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 236 ENLRKIARYVETGKFPW 252 (255)
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 99999999999999998
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-50 Score=369.61 Aligned_cols=253 Identities=40% Similarity=0.650 Sum_probs=213.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++...... ....
T Consensus 10 ~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~--~~~~ 87 (379)
T PLN02874 10 EEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES--DDSC 87 (379)
T ss_pred CCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc--chHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999987532111 1122
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~ 192 (288)
..+....+.+...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus 88 ~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~~ 167 (379)
T PLN02874 88 LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEY 167 (379)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHHH
Confidence 23334445667789999999999999999999999999999999999999999999999999999999999999866999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhH---H----------------------------------------------
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPL---I---------------------------------------------- 223 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~---~---------------------------------------------- 223 (288)
|++||++++|+||+++||||++||++++.+ .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 247 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTV 247 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999888755 2
Q ss_pred ------------------HHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHH-HHHHc---CcCcHHHHHHhh
Q 023017 224 ------------------EEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDI-VDKCF---GLDTVEEIIDSL 279 (288)
Q Consensus 224 ------------------~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~-~~~~~---~~~~~e~~~~~l 279 (288)
+.++ +++++.+|.+++.+|+.+++.....+...... ... ...+. ++|..||+.+|+
T Consensus 248 ~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Afl 327 (379)
T PLN02874 248 EEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALV 327 (379)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEE
Confidence 1134 78999999999999999987655455444433 233 22333 679999999997
Q ss_pred -cC-CCCCCC
Q 023017 280 -DD-VAPSYA 287 (288)
Q Consensus 280 -ek-r~p~~~ 287 (288)
+| |+|+|.
T Consensus 328 idK~r~P~w~ 337 (379)
T PLN02874 328 IDKDNAPKWN 337 (379)
T ss_pred EcCCCCCCCC
Confidence 77 999984
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=350.59 Aligned_cols=231 Identities=23% Similarity=0.288 Sum_probs=203.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++++.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++... .....
T Consensus 3 ~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~~~~~ 78 (258)
T PRK06190 3 EPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGD----GSAYG 78 (258)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cchhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999987531 11111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
. ...+++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 23456778889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHcCc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCFGL 269 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 269 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+....+. ...+..++.+
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRS 236 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999988877777 89999999999999999987755555554443 5556666643
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=348.64 Aligned_cols=239 Identities=19% Similarity=0.224 Sum_probs=209.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|+..+.++.+++|++|+||+|++.|++|.+++.+|.++++.++.|+++|+|||+|.|++||+|.|++++.... ...
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ---TGK- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc---chh-
Confidence 5668899999999999999999999999999999999999999999999999999999999999999875321 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+.. ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 11222 4678889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~- 267 (288)
++++++|++++++||+++||||+++|++++.+.+.++ ++++..++.+++.+|+.+++..........+. ...+..++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 235 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH 235 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888777777 89999999999999999988766655555443 45666777
Q ss_pred CcCcHHHHHH
Q 023017 268 GLDTVEEIID 277 (288)
Q Consensus 268 ~~~~~e~~~~ 277 (288)
+++..|++.+
T Consensus 236 ~~~~~egi~~ 245 (249)
T PRK07110 236 QPEVKRRIES 245 (249)
T ss_pred CHhHHHHHHH
Confidence 5666666654
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=358.56 Aligned_cols=247 Identities=48% Similarity=0.846 Sum_probs=214.2
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
.|.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++......+.......
T Consensus 10 ~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 10 QVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 58888999999999999999999999999999999999999999999999999999999999998753211111122234
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~ 194 (288)
++...+.+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|..+++|+
T Consensus 90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~ 169 (381)
T PLN02988 90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVG 169 (381)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHH
Confidence 44444556778899999999999999999999999999999999999999999999999999999999999998799999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCcCcHHH
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE 274 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 274 (288)
|||++++|+||+++||||++||++++.+...++.+++..+|.++...|+.+.................+.++|+.+.+++
T Consensus 170 LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~ 249 (381)
T PLN02988 170 LTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEE 249 (381)
T ss_pred HcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999888888888888889999999998865432111233334788999999999999
Q ss_pred HHHhhcC
Q 023017 275 IIDSLDD 281 (288)
Q Consensus 275 ~~~~lek 281 (288)
|.+.|++
T Consensus 250 i~~~L~~ 256 (381)
T PLN02988 250 IISALER 256 (381)
T ss_pred HHHHHHh
Confidence 9999886
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-49 Score=338.58 Aligned_cols=213 Identities=21% Similarity=0.303 Sum_probs=191.5
Q ss_pred CCCcEEEEee-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhcc
Q 023017 32 LCNQVLVEGK-----ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106 (288)
Q Consensus 32 ~~~~v~~~~~-----~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~ 106 (288)
|+++|.++.. ++|++|+||||++ |+++.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...
T Consensus 1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~--- 76 (222)
T PRK05869 1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTL--- 76 (222)
T ss_pred CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhcc---
Confidence 4566777666 8999999999974 999999999999999999999999999999999999999999987532
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcc
Q 023017 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 186 (288)
.......+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++
T Consensus 77 -~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i 155 (222)
T PRK05869 77 -SAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA 155 (222)
T ss_pred -ChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence 1122223344556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 187 g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
|.. +++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...
T Consensus 156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999999999988877777 8999999999999999997643
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-48 Score=355.62 Aligned_cols=250 Identities=68% Similarity=1.188 Sum_probs=215.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
..+.|.++..+++++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.|++||+|+|++++......++.+.
T Consensus 40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~ 119 (407)
T PLN02851 40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE 119 (407)
T ss_pred CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999865322222344
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHH
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~ 191 (288)
...++...+++.+.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|..++
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~ 199 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGE 199 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHH
Confidence 55677778888999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCcCc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (288)
+|++||++++|+||+++||+|+++|++++....+.+.++...++..+....+.+.................++++|+.+.
T Consensus 200 ~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~s 279 (407)
T PLN02851 200 YLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDT 279 (407)
T ss_pred HHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999998666666677777777777766666543211111223334678999999999
Q ss_pred HHHHHHhhcC
Q 023017 272 VEEIIDSLDD 281 (288)
Q Consensus 272 ~e~~~~~lek 281 (288)
+++|.+.|++
T Consensus 280 v~~I~~~L~~ 289 (407)
T PLN02851 280 VEEIIEALEN 289 (407)
T ss_pred HHHHHHHHHh
Confidence 9999999986
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-48 Score=367.28 Aligned_cols=251 Identities=12% Similarity=0.063 Sum_probs=215.7
Q ss_pred CCcE--EEEeeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCCc-ccccC
Q 023017 33 CNQV--LVEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSGRA-FCAGG 95 (288)
Q Consensus 33 ~~~v--~~~~~~~v~~i~ln~p~~~-------------N~l~~~~~~~l~~~l~~~~~-d~~v~vvvl~g~g~~-F~aG~ 95 (288)
+.+| .++++++|++||||||+++ |+++.+|+.+|.+++..++. |+++|+|||||.|+. ||+|.
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 4444 4566899999999999999 99999999999999999984 599999999999987 99999
Q ss_pred ChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE-cCcccccc-cccccccCeEEE-------eCceEEecc
Q 023017 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL-NGVTMGGG-AGVSIPGTFRVA-------CGKTVFATP 166 (288)
Q Consensus 96 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav-~G~a~GgG-~~lal~~D~~ia-------~~~a~f~~p 166 (288)
|+.... ..+...........++++.++..+|||+||+| ||+|+||| ++|+++||+||+ +++++|++|
T Consensus 335 Dl~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~ 410 (546)
T TIGR03222 335 DALLEA----HKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLS 410 (546)
T ss_pred Cccccc----cccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCC
Confidence 998421 11111112233444568889999999999999 89999999 999999999999 899999999
Q ss_pred cccccccCCCchHHHHhhcc-hHH-H--HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHH
Q 023017 167 ETLIGFHPDAGASFYLSHLP-GHL-G--EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEAC 241 (288)
Q Consensus 167 e~~~Gl~p~~g~~~~l~~~~-g~~-a--~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~ 241 (288)
|+++|++|++|++++|++++ |.. + ++++++|++++|+||+++|||++++|++++.+.+.++ ++++..+|.+++.+
T Consensus 411 e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~ 490 (546)
T TIGR03222 411 ELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTGL 490 (546)
T ss_pred ccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999998 887 7 5699999999999999999999999999988877777 89999999999999
Q ss_pred HHHhhccCCCChhhH-HH-HHHHHHHHc-CcCcHH---HHHHhhcCCCCCCC
Q 023017 242 LEKYSDLVYPDKNSV-IH-RIDIVDKCF-GLDTVE---EIIDSLDDVAPSYA 287 (288)
Q Consensus 242 k~~l~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~e---~~~~~lekr~p~~~ 287 (288)
|+.++......++.. +. +.+.+..++ ++|..| ++.+|+|||+|.|.
T Consensus 491 K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~ 542 (546)
T TIGR03222 491 EANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFD 542 (546)
T ss_pred HHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCC
Confidence 999988766655554 33 366677788 678888 89999999999994
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=367.73 Aligned_cols=253 Identities=14% Similarity=0.067 Sum_probs=215.7
Q ss_pred CCCcEEEE--eeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCC-Cccccc
Q 023017 32 LCNQVLVE--GKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSG-RAFCAG 94 (288)
Q Consensus 32 ~~~~v~~~--~~~~v~~i~ln~p~~~-------------N~l~~~~~~~l~~~l~~~~~-d~~v~vvvl~g~g-~~F~aG 94 (288)
.|+++.++ ++++|++||||||+++ |+++.+|+.+|.++++.++. |+++|+|||||.| +.||+|
T Consensus 258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG 337 (550)
T PRK08184 258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA 337 (550)
T ss_pred eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence 35455554 4689999999999988 68999999999999999996 7999999999999 499999
Q ss_pred CChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-Ccccccc-cccccccCeEEEe-------CceEEec
Q 023017 95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN-GVTMGGG-AGVSIPGTFRVAC-------GKTVFAT 165 (288)
Q Consensus 95 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~ 165 (288)
.|++.... .+..........+++++.++..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++
T Consensus 338 ~Dl~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 413 (550)
T PRK08184 338 ADATLLAH----KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL 413 (550)
T ss_pred CChhhhcc----cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence 99873221 11111122334456678899999999999997 9999999 9999999999999 9999999
Q ss_pred ccccccccCCCchHHHHhhc-chHH-HHHH--HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHH
Q 023017 166 PETLIGFHPDAGASFYLSHL-PGHL-GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEA 240 (288)
Q Consensus 166 pe~~~Gl~p~~g~~~~l~~~-~g~~-a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~ 240 (288)
||+++|++|++|++++|+++ +|.. |+++ +++|++++|+||+++||||+++|++++++.+..+ +++++.+|.+++.
T Consensus 414 pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~ 493 (550)
T PRK08184 414 SALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTG 493 (550)
T ss_pred ccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999998 6998 8887 5899999999999999999999999998888777 8999999999999
Q ss_pred HHHHhhccCCCChhhH-HH-HHHHHHHHc-CcCcHH---HHHHhhcCCCCCCCC
Q 023017 241 CLEKYSDLVYPDKNSV-IH-RIDIVDKCF-GLDTVE---EIIDSLDDVAPSYAY 288 (288)
Q Consensus 241 ~k~~l~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~e---~~~~~lekr~p~~~~ 288 (288)
+|+.++......++.. +. +.+.+..++ ++|..| ++.+|+|||+|+|.+
T Consensus 494 ~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~~ 547 (550)
T PRK08184 494 MEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFDW 547 (550)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCCC
Confidence 9999998776665555 33 356677777 578888 899999999999964
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=336.15 Aligned_cols=243 Identities=16% Similarity=0.172 Sum_probs=189.6
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCcccccCChhhHHHhhccCC
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEN-----DPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~-----d~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~ 108 (288)
.|.++.+++|++|+|| |+++|++|.+|+.+|.+++++++. |+++++|||+|. |++||+|.|++++.......+
T Consensus 18 ~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 18 RVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 4566667999999996 889999999999999999999998 899999999999 799999999998753211111
Q ss_pred hHHHHHHHHHHHHHHHHHh---cCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc
Q 023017 109 LEECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~---~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
......+...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~ 176 (287)
T PRK08788 97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR 176 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH
Confidence 1111222222233333333 7999999999999999999999999999999999999999999999999999999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDI 262 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~ 262 (288)
+|.. +++|+++|+.++|+||+++||||+++|++++.+.+.++ ++++.. |.+....|+..+......++..... ...
T Consensus 177 vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~ 255 (287)
T PRK08788 177 VGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIW 255 (287)
T ss_pred hhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999988877777 788865 4444444444433333334443332 233
Q ss_pred HHH--HcCcCcHHHHHHhh
Q 023017 263 VDK--CFGLDTVEEIIDSL 279 (288)
Q Consensus 263 ~~~--~~~~~~~e~~~~~l 279 (288)
... ++.....+.+..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~ 274 (287)
T PRK08788 256 VDAALQLEEKDLRTMERLV 274 (287)
T ss_pred HHHHhhcccccHHHHHHHH
Confidence 443 33566777777775
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=340.66 Aligned_cols=216 Identities=20% Similarity=0.235 Sum_probs=188.1
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC---C
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---K 108 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~---~ 108 (288)
.++.|.++.+++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++....... .
T Consensus 8 ~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~ 87 (302)
T PRK08272 8 NLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGG 87 (302)
T ss_pred CCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999875421100 0
Q ss_pred ----------------hHH--HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccc
Q 023017 109 ----------------LEE--CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI 170 (288)
Q Consensus 109 ----------------~~~--~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~ 170 (288)
... ...+....++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~ 167 (302)
T PRK08272 88 AYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV 167 (302)
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc
Confidence 000 11234556677888999999999999999999999999999999999999999999998
Q ss_pred cccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhcc
Q 023017 171 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDL 248 (288)
Q Consensus 171 Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~ 248 (288)
|.+|+. ..+++++|.. |++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.+++.
T Consensus 168 gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~ 244 (302)
T PRK08272 168 WGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAVNSA 244 (302)
T ss_pred ccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666643 3467789999 99999999999999999999999999999998888777 899999999999999999876
Q ss_pred CC
Q 023017 249 VY 250 (288)
Q Consensus 249 ~~ 250 (288)
.+
T Consensus 245 ~~ 246 (302)
T PRK08272 245 LL 246 (302)
T ss_pred HH
Confidence 43
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=335.98 Aligned_cols=224 Identities=21% Similarity=0.236 Sum_probs=190.9
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhc-c-----
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-Q----- 106 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~-~----- 106 (288)
++.+.++.+++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++..... .
T Consensus 3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999997632110 0
Q ss_pred -----------CC-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccC
Q 023017 107 -----------GK-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP 174 (288)
Q Consensus 107 -----------~~-~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p 174 (288)
.. ..........+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~ 161 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P 161 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence 00 0011112234456777899999999999999999999999999999999999999999999998 5
Q ss_pred CCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCC-
Q 023017 175 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYP- 251 (288)
Q Consensus 175 ~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~- 251 (288)
+ ++++++++++|.. +++|+++|+.++|+||+++||||+++|++++++.+.++ ++++..++.+++.+|+.+++....
T Consensus 162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~ 240 (288)
T PRK08290 162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQ 240 (288)
T ss_pred c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence 4 4567789999999 99999999999999999999999999999998888777 899999999999999999876543
Q ss_pred ChhhHHH
Q 023017 252 DKNSVIH 258 (288)
Q Consensus 252 ~~~~~~~ 258 (288)
..+....
T Consensus 241 ~~~~~~~ 247 (288)
T PRK08290 241 GFRAALD 247 (288)
T ss_pred cHHHHHH
Confidence 3444333
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=324.00 Aligned_cols=209 Identities=16% Similarity=0.115 Sum_probs=188.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++++.++.+++|++|||||| +.|++|.+++.+|.++++.++ +++++|||+|.|++||+|.|++++... ....
T Consensus 2 ~~~i~~~~~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~ 73 (229)
T PRK06213 2 SELVSYTLEDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAA 73 (229)
T ss_pred cceEEEEecCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhH
Confidence 44789999999999999998 579999999999999999998 457999999999999999999987531 2223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.++..++++++|.. +
T Consensus 74 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 74 IALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 445566778889999999999999999999999999999999999998 99999999999998888888899999998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..++.++..+|+.++...
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 213 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVRAAA 213 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877777 8999999999999999997653
|
|
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=308.20 Aligned_cols=250 Identities=22% Similarity=0.298 Sum_probs=219.5
Q ss_pred CCcEEEEe----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccC
Q 023017 33 CNQVLVEG----KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107 (288)
Q Consensus 33 ~~~v~~~~----~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~ 107 (288)
-.++.+++ +.+|.+|-+|||.+.|+++.-|+.+|.++++.+..|+.+|||+|++.- +.||+|+||++-..+
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M---- 101 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM---- 101 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----
Confidence 34566664 458999999999999999999999999999999999999999999875 999999999997654
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
...+...|++.+..++..+.++|.||||+|+|.++|||++++++||+|+|+.+++|+++|++++++|++|++++|+|.+|
T Consensus 102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg 181 (291)
T KOG1679|consen 102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG 181 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCC----hhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEK----LPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I 260 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~----l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~ 260 (288)
.. +++|++|++.+++.||...||||++|...+ ....+.++ +++..+.|.+++.+|..++...+-+....+.- .
T Consensus 182 ~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe 261 (291)
T KOG1679|consen 182 VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEE 261 (291)
T ss_pred HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHH
Confidence 99 999999999999999999999999998653 22335556 78999999999999999998776554444332 1
Q ss_pred HHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 261 DIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 261 ~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
....+.. ..|..|++.+|-|||+|+|
T Consensus 262 ~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 262 MCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 2222333 5789999999999999998
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=361.07 Aligned_cols=249 Identities=19% Similarity=0.239 Sum_probs=208.8
Q ss_pred cEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 35 ~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.+.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ..+.....
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~-~~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLF-AAPEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhc-cCCHHHHH
Confidence 577774 7999999999999999999999999999999999999999999999999999999999875321 11222334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+...+++++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 5556667888899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC------------CHH---------HHHHHHH-------
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD------------DPS---------VIEACLE------- 243 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~------------~~~---------~~~~~k~------- 243 (288)
|+++|++++|+||+++||||+++|++++.+.+.++ ++++.. +|. +++.+|+
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~ 245 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAG 245 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999988777777 677754 343 3355554
Q ss_pred -----------HhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhcCCCC
Q 023017 244 -----------KYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLDDVAP 284 (288)
Q Consensus 244 -----------~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~lekr~p 284 (288)
.++.......+..++ +.+.+..++ +++..+++.+|+++|.-
T Consensus 246 ~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~ 299 (715)
T PRK11730 246 KHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYV 299 (715)
T ss_pred cCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 345444434444433 356666777 68899999999988643
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=321.29 Aligned_cols=204 Identities=19% Similarity=0.291 Sum_probs=178.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHHHHHHHHH
Q 023017 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF 122 (288)
Q Consensus 44 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 122 (288)
+++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++..... ........+.+.++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence 455999999999999999999999999999999999999999999 69999999998764311 1222333455556678
Q ss_pred HHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCC
Q 023017 123 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLN 201 (288)
Q Consensus 123 ~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~ 201 (288)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++++++|++++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHcCccceecCCCCh------------hHHHHHH-HHhhcCCHH--HHHHHHHHhhcc
Q 023017 202 GAEMMACGLATHYSVSEKL------------PLIEEEL-GKLVTDDPS--VIEACLEKYSDL 248 (288)
Q Consensus 202 a~eA~~~Glv~~vv~~~~l------------~~~~~~~-~~l~~~~~~--~~~~~k~~l~~~ 248 (288)
|+||+++||||+++|+.++ ++....+ +.+...++. +++..|.++...
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 258 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQG 258 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcc
Confidence 9999999999999999888 5666676 555555555 788888888763
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=302.80 Aligned_cols=254 Identities=19% Similarity=0.293 Sum_probs=218.9
Q ss_pred CCCcEEEEe---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhh--c-
Q 023017 32 LCNQVLVEG---KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM--N- 105 (288)
Q Consensus 32 ~~~~v~~~~---~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~--~- 105 (288)
.++.+.+.+ +..|.++.||||.|.|+++..|+.|+.++++.+..||++|+|||+|+|+.||+|.|+..+.... .
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~ 96 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP 96 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc
Confidence 466555553 4579999999999999999999999999999999999999999999999999999987654321 1
Q ss_pred cC-----ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHH
Q 023017 106 QG-----KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF 180 (288)
Q Consensus 106 ~~-----~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 180 (288)
++ ......+++..+++.+..+.+||||+|++|+|+|+|+|+.|..+||+|+|+++|.|+.-|+.+|+..+.|...
T Consensus 97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 11 1234566777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHH--HHHHHhcCCCCCHHHHHHcCccceecCCC-ChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhH
Q 023017 181 YLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSE-KLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSV 256 (288)
Q Consensus 181 ~l~~~~g~~--a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~ 256 (288)
+||..+|.+ ++++.+|+++|+|.||++.|||.+|+|+. ++...+..+ ..++.++|.++..+|..++...+...++.
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~s 256 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEES 256 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhh
Confidence 999999965 99999999999999999999999999974 455556666 78999999999999999987766666666
Q ss_pred HHHHHHHH--HHcCcCcHHHHHHhhcCCCCC
Q 023017 257 IHRIDIVD--KCFGLDTVEEIIDSLDDVAPS 285 (288)
Q Consensus 257 ~~~~~~~~--~~~~~~~~e~~~~~lekr~p~ 285 (288)
+.+...+. .+++.|..+.+++-++|++|.
T Consensus 257 LnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 257 LNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 66644444 344889999999999999886
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=309.51 Aligned_cols=210 Identities=16% Similarity=0.139 Sum_probs=177.4
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG-FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
+.++.+++|++|+||||++ |+++.+|+.+|.++++.+++|++++ +||++|.|++||+|.|++++... .........
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence 5788899999999999985 9999999999999999999998865 88889999999999999986421 111222233
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEe-CceEEecccccccccCCCchHHHHhhcchHH-H-H
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G-E 191 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a-~ 191 (288)
+...+++++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.|+++++.+|++++|.. + +
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence 44556778889999999999999999999999999999999998 5689999999999974444578899999988 7 6
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcC--CHHHHHHHHHHhhcc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTD--DPSVIEACLEKYSDL 248 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~--~~~~~~~~k~~l~~~ 248 (288)
+++++|++++|+||+++||||+++|+ +++.+.+.++ ++++.. ++.++...|+.++..
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~ 219 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPE 219 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Confidence 99999999999999999999999985 5777777777 688876 556788888888643
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=347.82 Aligned_cols=246 Identities=20% Similarity=0.261 Sum_probs=207.1
Q ss_pred CCcEEEEe-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCCh
Q 023017 33 CNQVLVEG-KANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 33 ~~~v~~~~-~~~v~~i~ln~p-~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 109 (288)
...+.+++ +++|++|+|||| ++.|++|.+|+.+|.++++.++.|+++|+|||+|.+ ++||+|+|++++... ...
T Consensus 4 ~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~---~~~ 80 (708)
T PRK11154 4 ASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAAC---KTA 80 (708)
T ss_pred CceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhcc---CCH
Confidence 34577787 789999999999 689999999999999999999999999999999875 899999999987532 112
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEecccccccccCCCchHHHHhhcch
Q 023017 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
.....+....++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG 160 (708)
T PRK11154 81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG 160 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcC
Confidence 222334455667888999999999999999999999999999999999986 599999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HH-------------hhcCCHH----------------
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GK-------------LVTDDPS---------------- 236 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~-------------l~~~~~~---------------- 236 (288)
.. |++|+++|++++|+||+++||||+++|++++.+.+.++ ++ +++.+|.
T Consensus 161 ~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (708)
T PRK11154 161 VSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAK 240 (708)
T ss_pred HHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999999887777766 45 3455443
Q ss_pred ------HHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhcC
Q 023017 237 ------VIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLDD 281 (288)
Q Consensus 237 ------~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~lek 281 (288)
++..+|+.++..........+. +.+.+..++ +++..+++.+|+.+
T Consensus 241 ~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~ 293 (708)
T PRK11154 241 TQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFAT 293 (708)
T ss_pred cccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6788888888765555544443 466677777 67888899999743
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=294.97 Aligned_cols=251 Identities=17% Similarity=0.269 Sum_probs=211.2
Q ss_pred CCCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CcccccCChhhHHHhhccC
Q 023017 32 LCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--G-RAFCAGGDIVSLYHFMNQG 107 (288)
Q Consensus 32 ~~~~v~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~--g-~~F~aG~Dl~~~~~~~~~~ 107 (288)
.++.|.+++. ++|+.|+||||+++|++.+..+.|+.+++..++.|+++.||+|||. | ..||+|.|-+.-.....=.
T Consensus 16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~ 95 (282)
T COG0447 16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV 95 (282)
T ss_pred CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence 4778999998 9999999999999999999999999999999999999999999985 5 7999999997543210000
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
+.+...++ .+.++-+.++++||||||.|+|+++|||-.|-+.||+.||++++.|+....++|-+-++.++..|.|.+|
T Consensus 96 ~d~~~~rL--nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 96 DDDGIPRL--NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CCccCccc--chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 11111111 2335566788999999999999999999999999999999999999999999999999888999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH-HHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID-IVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~-~~~ 264 (288)
.. |+++.+.++.++|+||+++|+||.|||-++|+++..++ +++..++|.+++..|..++...... . ...+.. -..
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~DGl-a-G~q~~ag~at 251 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNADCDGL-A-GLQELAGNAT 251 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCchh-h-HHHHhcccce
Confidence 99 99999999999999999999999999999999877777 8999999999999999998765432 1 111111 111
Q ss_pred HHc--CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF--GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~--~~~~~e~~~~~lekr~p~~ 286 (288)
.++ ..+..|+-.+|+|||+|+|
T Consensus 252 ~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 252 LLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred EEEEechhhhhhHHHHhhccCCCh
Confidence 222 6789999999999999998
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=341.58 Aligned_cols=239 Identities=19% Similarity=0.248 Sum_probs=198.5
Q ss_pred EeeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCcccccCChhhHHHhhccCChHHHHHHH
Q 023017 39 EGKANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSM-KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF 116 (288)
Q Consensus 39 ~~~~~v~~i~ln~p-~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 116 (288)
+.+++|++|||||| ++.|++|.+|+.+|.++++.++.|+++|+||| +|.|++||+|+|++++... .+......+.
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~~ 82 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKALA 82 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHHH
Confidence 45789999999999 68999999999999999999999999999986 6788999999999987531 1122233445
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 117 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
...++++..+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|.. +++|
T Consensus 83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l 162 (699)
T TIGR02440 83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM 162 (699)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence 55677888999999999999999999999999999999999985 79999999999999999999999999999 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-H-------------HhhcCCHHH----------------------
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-G-------------KLVTDDPSV---------------------- 237 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~-------------~l~~~~~~~---------------------- 237 (288)
+++|++++|+||+++||||+++|++++.+.+.++ + +++..+|.+
T Consensus 163 lltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a 242 (699)
T TIGR02440 163 ILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPA 242 (699)
T ss_pred HHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChh
Confidence 9999999999999999999999999888777766 3 355555555
Q ss_pred HHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhc
Q 023017 238 IEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLD 280 (288)
Q Consensus 238 ~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~le 280 (288)
...+|+.++..........++ +.+.+..++ +++..+.+.+|+-
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~ 287 (699)
T TIGR02440 243 AERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFA 287 (699)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334445565554444444443 366677777 6788888988863
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=290.34 Aligned_cols=250 Identities=20% Similarity=0.286 Sum_probs=218.0
Q ss_pred CCCcEEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln-~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.+..+.+++++++..|.+| ||+|.|+++.+++.++.++++.+.+|+++..++++|.|++||+|.|+..+.....+....
T Consensus 5 ~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~ 84 (266)
T KOG0016|consen 5 RYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANE 84 (266)
T ss_pred cccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccc
Confidence 4568999999999999999 999999999999999999999999999999999999999999999999886543322222
Q ss_pred H---HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 111 E---CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 111 ~---~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
. ..++...+..+...+..+|||+||.|||+|+|.|..+...||+|+|+|+++|..|++++|++|++|+++.+++++|
T Consensus 85 ~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG 164 (266)
T KOG0016|consen 85 ESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMG 164 (266)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhc
Confidence 2 2233344445788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHH-HHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLI-EEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~-~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~ 264 (288)
.. |.+|++.|++++|+||.+.|||+++++++.+.+. ..++++++..+|.+++..|++++......+.... ++...+.
T Consensus 165 ~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~ 244 (266)
T KOG0016|consen 165 SASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLL 244 (266)
T ss_pred hhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99 9999999999999999999999999999999864 4556999999999999999999876555444443 3466666
Q ss_pred HHc-CcCcHHHHHHhhcC
Q 023017 265 KCF-GLDTVEEIIDSLDD 281 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lek 281 (288)
..| +.+..+.+.+|+.+
T Consensus 245 ~~W~s~e~~~~~~~~~~~ 262 (266)
T KOG0016|consen 245 KQWVSAECLARFKQYLSK 262 (266)
T ss_pred hhccChHHHHHHHHHhcc
Confidence 666 67899999999876
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=277.46 Aligned_cols=269 Identities=20% Similarity=0.263 Sum_probs=224.5
Q ss_pred hhHHHhhhhhcccCCCCCccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCc
Q 023017 11 RYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA 90 (288)
Q Consensus 11 ~~~~~~~~~s~~~~~~~~~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~ 90 (288)
.|..-|.+...+.++.... ...+++.+++|..|+||+|+|.|+++.+|+.+|.+.+....++.++|+|||+..|+.
T Consensus 13 ~~~~~~aq~~aRf~s~~p~----~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~Gki 88 (287)
T KOG1682|consen 13 KYATGCAQQVARFTSNGPS----DLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKI 88 (287)
T ss_pred hcccchHhhhHHHhhcCcc----cccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCcc
Confidence 3444444444444433332 235666779999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccc
Q 023017 91 FCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI 170 (288)
Q Consensus 91 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~ 170 (288)
||+|.||+++.. +...+...+.+....+++.-+++.|.|+|+-|||.+.++|+.|+..||++||+++++|..|..++
T Consensus 89 fSaGH~LKELt~---e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~v 165 (287)
T KOG1682|consen 89 FSAGHNLKELTN---EPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGV 165 (287)
T ss_pred ccccccHHHhhc---CccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCce
Confidence 999999999975 34456667788889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhcc
Q 023017 171 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDL 248 (288)
Q Consensus 171 Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~ 248 (288)
|++...-+.. |.|.+... +.+|++||.+++++||+..|||.++||+++++.+++++ ..+-..+...+...|+.++..
T Consensus 166 GlFCSTPGvA-laRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk~f~y~q 244 (287)
T KOG1682|consen 166 GLFCSTPGVA-LARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGKEFYYKQ 244 (287)
T ss_pred eeEecCcchh-HhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9977665544 78888888 99999999999999999999999999999999888888 788888888999999888766
Q ss_pred CCCChhhHHHH-HHHHHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 249 VYPDKNSVIHR-IDIVDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
......++... .+..-.-| -.|..|||.+|+|||.|+|.
T Consensus 245 ~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~~ 285 (287)
T KOG1682|consen 245 LAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNWK 285 (287)
T ss_pred HHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCcC
Confidence 44333222222 33333334 47999999999999999984
|
|
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=294.09 Aligned_cols=255 Identities=51% Similarity=0.829 Sum_probs=229.6
Q ss_pred CCCccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhh
Q 023017 26 SSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFM 104 (288)
Q Consensus 26 ~~~~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~ 104 (288)
++.+.+..+.|.++.++....||||||++.|++|.+|+..+.-.|..++.++.+++||+.|.| +.||+|+|+.......
T Consensus 30 ~~~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~ 109 (401)
T KOG1684|consen 30 SSVSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESI 109 (401)
T ss_pred cccccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHh
Confidence 334444567899999999999999999999999999999999999999999999999999985 9999999999777666
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhh
Q 023017 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184 (288)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 184 (288)
.++.......++...+.+...+.++.||.||.++|-.+|||++|..+--||||+|++.|.+||+.+|++|+.|++++|+|
T Consensus 110 ~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsr 189 (401)
T KOG1684|consen 110 KDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSR 189 (401)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhh
Confidence 67777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHH-HhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHH
Q 023017 185 LPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263 (288)
Q Consensus 185 ~~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~-~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~ 263 (288)
++|..+.||.|||.++++.||+.+||.++.|+.++|....+++. .+...+...+..+.+.+...............+.+
T Consensus 190 lpg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i 269 (401)
T KOG1684|consen 190 LPGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVI 269 (401)
T ss_pred CccHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHH
Confidence 99977999999999999999999999999999999988777774 66666668899999998776544444444557899
Q ss_pred HHHcCcCcHHHHHHhhc
Q 023017 264 DKCFGLDTVEEIIDSLD 280 (288)
Q Consensus 264 ~~~~~~~~~e~~~~~le 280 (288)
.+||+.+.+|+|++.|.
T Consensus 270 ~~~Fs~~tVeeIie~lk 286 (401)
T KOG1684|consen 270 NKCFSANTVEEIIEALK 286 (401)
T ss_pred HHhhccccHHHHHHHHH
Confidence 99999999999999663
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=331.22 Aligned_cols=192 Identities=20% Similarity=0.293 Sum_probs=173.1
Q ss_pred cEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 35 ~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence 577775 78999999999999999999999999999999999999999999999999999999998853211 1222333
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+.+..++++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 4555667888999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
|+++|++++|+||+++||||+++|++++.+.+..+
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~ 200 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQL 200 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHH
Confidence 99999999999999999999999998887766555
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=284.10 Aligned_cols=190 Identities=33% Similarity=0.512 Sum_probs=174.5
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
+.+++++++++|+||+|++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++..... ..+...++
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~--~~~~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSD--AGEEARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccc--cchhHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999875321 11135677
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
.+.+++++.++..+|||+||++||+|.|+|++++++||+||++++++|++||+++|++|+.|++++|++++|.. +.+++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
++|++++++||+++||||++++++++.+.+.++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~ 191 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALEL 191 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence 999999999999999999999998877666555
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=320.71 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=175.4
Q ss_pred CccCCCCcEEEEeeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCcccccC
Q 023017 28 VTDDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGS-GRAFCAGG 95 (288)
Q Consensus 28 ~~~~~~~~v~~~~~~~v~~i~ln~p~----------~~N~l~~~~~~~l~~~l~~~~-~d~~v~vvvl~g~-g~~F~aG~ 95 (288)
|.|+.++++.++++++|++|+||||+ |+|++|.+|+.+|.++++.++ .|+++|+|||||. |++||+|.
T Consensus 5 ~~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~ 84 (546)
T TIGR03222 5 TEPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA 84 (546)
T ss_pred CCCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence 44556788999999999999999975 899999999999999999999 7899999999987 58999999
Q ss_pred ChhhHHHhhccCChHHHHHHH-HHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEeccccc-cc
Q 023017 96 DIVSLYHFMNQGKLEECKDFF-RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IG 171 (288)
Q Consensus 96 Dl~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~G 171 (288)
|++++.... .........+. .....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|
T Consensus 85 DL~~~~~~~-~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lG 163 (546)
T TIGR03222 85 NIFMLGLST-HAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLG 163 (546)
T ss_pred CHHHHhccc-cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccC
Confidence 999875311 00011111111 11233455678899999999999999999999999999999986 799999997 99
Q ss_pred ccCCCchHHHHh--hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCH
Q 023017 172 FHPDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDP 235 (288)
Q Consensus 172 l~p~~g~~~~l~--~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~ 235 (288)
++|++|++.++. +.+|.. |++|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|
T Consensus 164 l~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 164 VLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSD 231 (546)
T ss_pred cCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCC
Confidence 999999998887 688998 99999999999999999999999999999998877777 78887766
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=328.71 Aligned_cols=182 Identities=21% Similarity=0.346 Sum_probs=165.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEGKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFV-SMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vv-vl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
++.+.++++++|++||||+|+ +.|++|.+++.+|.++++.++.|+++|++ |++|.|++||+|+|++++... .+..
T Consensus 12 ~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~~ 88 (737)
T TIGR02441 12 RTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTAQ 88 (737)
T ss_pred CCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CChH
Confidence 457899999999999999998 68999999999999999999999999965 579999999999999998531 1223
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEecccccccccCCCchHHHHhhcchH
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
....+....++++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|.
T Consensus 89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~ 168 (737)
T TIGR02441 89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV 168 (737)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCH
Confidence 34455566778899999999999999999999999999999999999987 5899999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
. |++|+++|++++|+||+++||||+++|+
T Consensus 169 ~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 169 PAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 8 9999999999999999999999999986
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=312.34 Aligned_cols=206 Identities=14% Similarity=0.169 Sum_probs=172.9
Q ss_pred cCCCCcEEEEeeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CcccccCCh
Q 023017 30 DDLCNQVLVEGKANSRMAILNRP-------S---ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGSG-RAFCAGGDI 97 (288)
Q Consensus 30 ~~~~~~v~~~~~~~v~~i~ln~p-------~---~~N~l~~~~~~~l~~~l~~~~-~d~~v~vvvl~g~g-~~F~aG~Dl 97 (288)
+..++++.++++++|++|+|||| + +.|+++.+|+.+|.++++.++ +++++++|||+|.+ ++||+|.|+
T Consensus 11 ~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 11 PSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 34577899999999999999965 3 899999999999999999999 78999999999975 899999999
Q ss_pred hhHHHhhccCChHHHHHHHHH-HHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEeccccc-cccc
Q 023017 98 VSLYHFMNQGKLEECKDFFRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFH 173 (288)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~ 173 (288)
+.+.... .........+... ...+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSS-HAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccc-cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9874311 0000011111111 123455678899999999999999999999999999999987 899999997 9999
Q ss_pred CCCchHHHHh--hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHH
Q 023017 174 PDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPS 236 (288)
Q Consensus 174 p~~g~~~~l~--~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~ 236 (288)
|++|++.+++ +++|.. +++|+++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 779998 99999999999999999999999999999888777666 788777664
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=157.69 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcc
Q 023017 62 MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT 141 (288)
Q Consensus 62 ~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a 141 (288)
.+.+|.++++.+++|+++++|||++ +|.|.|+.... .+.+++..+..++||+||+++|.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~a 82 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGNA 82 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCch
Confidence 4789999999999999999999997 58888775421 233466677889999999999999
Q ss_pred cccccccccccCeEEEeCceEEecccccccccCCCchHH--------HHhhcch--HH-HHHHHhcCCCCCHHHHHHcCc
Q 023017 142 MGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF--------YLSHLPG--HL-GEFLALTGAKLNGAEMMACGL 210 (288)
Q Consensus 142 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~~~~g--~~-a~~l~l~g~~~~a~eA~~~Gl 210 (288)
.|+|+.|+++||++++++++.|+++.+..+.-+...... .+++..| .. .++++..|..++|++|++.||
T Consensus 83 ~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GL 162 (177)
T cd07014 83 ASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGL 162 (177)
T ss_pred hHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCC
Confidence 999999999999999999999999988766433322222 3444444 55 788889999999999999999
Q ss_pred cceecCCCChh
Q 023017 211 ATHYSVSEKLP 221 (288)
Q Consensus 211 v~~vv~~~~l~ 221 (288)
||++.+.+++.
T Consensus 163 VD~v~~~~e~~ 173 (177)
T cd07014 163 VDSLGSFDDAV 173 (177)
T ss_pred cccCCCHHHHH
Confidence 99999866543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=156.72 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=114.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 023017 45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124 (288)
Q Consensus 45 ~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (288)
++|+++. .++..+...+.+.++.+++++ ++.|+|.=. |-|+++..- ..++.
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~-------------------~~i~~ 52 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDST-------------------REIVQ 52 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH-------------------HHHHH
Confidence 4566653 266777888999999998665 777777632 444444321 13455
Q ss_pred HHhcCCCcEEEEEc---CcccccccccccccCeEEEeCceEEecccccccccCCC--------------chHHHHhhcch
Q 023017 125 LLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA--------------GASFYLSHLPG 187 (288)
Q Consensus 125 ~l~~~~kp~Iaav~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~l~~~~g 187 (288)
.+..+|||||++|+ |+|.|+|+.|+++||++|++++++|+.++...+..+.. +....+++..|
T Consensus 53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 132 (187)
T cd07020 53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG 132 (187)
T ss_pred HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56789999999999 99999999999999999999999999999985554433 23557888888
Q ss_pred H--H-HHHHHhcCCCCCHHHHHHcCccceecCCC
Q 023017 188 H--L-GEFLALTGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 188 ~--~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
. . +.+++++|+.++|+||+++||||++++++
T Consensus 133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 7 5 89999999999999999999999999875
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-17 Score=138.10 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=82.5
Q ss_pred CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHH
Q 023017 43 NSRMAILNRP--SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (288)
Q Consensus 43 ~v~~i~ln~p--~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (288)
+|++|.++.+ +..+.-+...+.+|.++|+.+..||++++|||+ .||.|.|+..+.. +.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------~~ 60 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------IR 60 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH----------------HH
Confidence 3555666533 122333455689999999999999999999998 6899999976531 22
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEec
Q 023017 121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165 (288)
Q Consensus 121 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~ 165 (288)
+.+..+..++||+||+++|.|.|+|+.|+++||++++++++.|+.
T Consensus 61 ~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs 105 (211)
T cd07019 61 AELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS 105 (211)
T ss_pred HHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence 345667888999999999999999999999999999999988874
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-15 Score=122.36 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+++.+..+|.+.|+.++.|+.+++|+|... |.|.|+... ..+...+..++||+|+.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~----s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEVN----TPGGRVDAG-------------------MNIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEEE----CCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence 566889999999999999999999999874 666665432 124445667789999999
Q ss_pred cCcccccccccccccCeEEEeCceEEecccccccccCCCchH------HHH----hh---------cchHH-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS------FYL----SH---------LPGHL-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~l----~~---------~~g~~-a~~l~l~g 197 (288)
+|.|.++|+.|+++||.|++.+++.|++.....+.....+-. ..+ .+ ..... ..+++..+
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 999999999999999999999999999998876554322000 111 11 12222 46677789
Q ss_pred CCCCHHHHHHcCcccee
Q 023017 198 AKLNGAEMMACGLATHY 214 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~v 214 (288)
..++++||++.||||++
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 99999999999999975
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=125.13 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcC
Q 023017 51 RPSALNA-LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH 129 (288)
Q Consensus 51 ~p~~~N~-l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 129 (288)
++...|+ ++..++.+|.++|+++++|+++++|||+. +|.|.++... ..+.+.+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~- 72 (214)
T cd07022 14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA- 72 (214)
T ss_pred CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc-
Confidence 4444454 45788999999999999999999999986 3566554332 122233344444
Q ss_pred CCcEEEEEcCcccccccccccccCeEEEeCceEEecccc
Q 023017 130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168 (288)
Q Consensus 130 ~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~ 168 (288)
+|||||+++|.|.|+|+.++++||++++++++.|+...+
T Consensus 73 ~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 73 GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeE
Confidence 699999999999999999999999999999999875443
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=141.13 Aligned_cols=171 Identities=17% Similarity=0.214 Sum_probs=122.6
Q ss_pred eeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHH
Q 023017 40 GKANSRMAILNRPS--ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR 117 (288)
Q Consensus 40 ~~~~v~~i~ln~p~--~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 117 (288)
.+++|++|+++.+= ..+..+....+.+.+.|+++..|+++|+|||+-. |.|++.... +
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------e 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------E 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------H
Confidence 46789999998652 2343444446678899999999999999999965 222222110 1
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEE------eccc------ccccccCCCchHHHHhh-
Q 023017 118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF------ATPE------TLIGFHPDAGASFYLSH- 184 (288)
Q Consensus 118 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~l~~- 184 (288)
.+.+.+.++...+||||+.++|.|.+||+.++++||.++|.+.+.+ +.+. .++|+.|....+..+..
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 1223444566778999999999999999999999999999998877 5452 47888877655543332
Q ss_pred ---------------------------cc------hHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhh
Q 023017 185 ---------------------------LP------GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLV 231 (288)
Q Consensus 185 ---------------------------~~------g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~ 231 (288)
.+ .....+.+.+|+.++++||+++||||++. .+++....+++++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~~~Ai~~a~~la 522 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GLDEAVAKAAKLA 522 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CHHHHHHHHHHHc
Confidence 22 22256677899999999999999999994 4555555556666
Q ss_pred cC
Q 023017 232 TD 233 (288)
Q Consensus 232 ~~ 233 (288)
..
T Consensus 523 ~~ 524 (584)
T TIGR00705 523 HC 524 (584)
T ss_pred CC
Confidence 65
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=121.99 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=80.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 023017 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (288)
Q Consensus 44 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (288)
|++|.++.+=... ++.++.+|.+.|+.++.|+++++|+|++. |.|.|+.... .+.+.+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~~----s~Gg~~~~~~----------------~i~~~i 59 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRIN----SPGGSVVASE----------------EIYREI 59 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEEE----CCCCCHHHHH----------------HHHHHH
Confidence 5566666441001 36789999999999999999999999994 7888876421 123456
Q ss_pred HHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecc
Q 023017 124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166 (288)
Q Consensus 124 ~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p 166 (288)
..+..++||+||+++|.|.|+|+.|+++||++++++.+.|+..
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence 6677889999999999999999999999999999999988653
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=117.43 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCc
Q 023017 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (288)
Q Consensus 61 ~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~ 140 (288)
.+...+.+.|+.+..++.+ .+.|.+.|+...+| ..+...+..+|||+|+.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~~-------------------------~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFAG-------------------------LAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHHH-------------------------HHHHHHHHhcCCCEEEEEcch
Confidence 4677888889988877443 45556665443322 135556777899999999999
Q ss_pred ccccccccccccCeEEEeCceEEecccccccccCCCch---------------HHHHhhcch--HH-HHHHHhcCCCCCH
Q 023017 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA---------------SFYLSHLPG--HL-GEFLALTGAKLNG 202 (288)
Q Consensus 141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~~~~g--~~-a~~l~l~g~~~~a 202 (288)
|.|+|+.++++||+|++++++.|+++....|..+.... ...+.+..| .. ..+++..+..+++
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 99999999999999999999999998877665443221 223666677 45 7777777788999
Q ss_pred HHHHHcCcccee
Q 023017 203 AEMMACGLATHY 214 (288)
Q Consensus 203 ~eA~~~Glv~~v 214 (288)
+||+++||||+|
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=115.91 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=100.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 023017 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (288)
Q Consensus 44 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (288)
|++|+++.+ ++ ....+|.+.|+.+.+|+++++|||++. |.|.++... .++.
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~ 52 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY 52 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence 556666543 11 236789999999999999999999985 777766532 1233
Q ss_pred HHHhcCC--CcEEEEEcCcccccccccccccCeEEEeCceEEeccccc------------ccccC---------CCc---
Q 023017 124 YLLGTHL--KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHP---------DAG--- 177 (288)
Q Consensus 124 ~~l~~~~--kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p---------~~g--- 177 (288)
..+..++ ||+||+++|.|.|+|+.|+++||.+++++++.|+...+. +|+-+ ..+
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 3444555 999999999999999999999999999999887764332 23311 000
Q ss_pred --hH----HHHh-----------------hcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 023017 178 --AS----FYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (288)
Q Consensus 178 --~~----~~l~-----------------~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 220 (288)
.+ ..+. |.+.....+=++.|+.+++++|++.||||++...+++
T Consensus 133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~ 198 (207)
T TIGR00706 133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDA 198 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHH
Confidence 00 0111 1122221122468899999999999999999755443
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=107.69 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 023017 45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124 (288)
Q Consensus 45 ~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (288)
.+|.++. .+++.....|.+.|+.+++++ ++.|+|.=. |.|+++.. ...+..
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~~ 52 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIVD 52 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHHH
Confidence 4455543 366788888999999999886 667776654 44444432 224566
Q ss_pred HHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCch--------HHH------HhhcchH--
Q 023017 125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA--------SFY------LSHLPGH-- 188 (288)
Q Consensus 125 ~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~------l~~~~g~-- 188 (288)
.+..+|+|+|+.|+|.|.++|+.++++||++++++++.|+.++. ++..|. ... +.+.-|+
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 67889999999999999999999999999999999999998844 333332 111 2222332
Q ss_pred H-HHHHHhcC-------------CCCCHHHHHHcCccceecCC
Q 023017 189 L-GEFLALTG-------------AKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 189 ~-a~~l~l~g-------------~~~~a~eA~~~Glv~~vv~~ 217 (288)
. +..|+-.. -.++++||++.|++|.+.++
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 2 45554443 26999999999999999865
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=110.89 Aligned_cols=90 Identities=11% Similarity=-0.038 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
-+..++.+|.+.|+++..|+++++|||+..+..| ++.++.++ .+.+..+...+|||||.+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAYA 85 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEEe
Confidence 3456789999999999999999999999987666 55555444 234444566799999999
Q ss_pred cCcccccccccccccCeEEEeCceEEecccc
Q 023017 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPET 168 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~ 168 (288)
+| |.++|+.|+++||.+++.+.+.|+...+
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv 115 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGL 115 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeecc
Confidence 98 8899999999999999999999998544
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-09 Score=86.78 Aligned_cols=136 Identities=11% Similarity=0.205 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+++.+...|.+.++.++++ .++.|+|.=. |.|+.+... ..++..+...++||++.|
T Consensus 10 I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~~i~~~~~pvv~~v 65 (172)
T cd07015 10 ITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQRIQQSKIPVIIYV 65 (172)
T ss_pred ECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCcCEEEEE
Confidence 6677888899999999865 4677777654 444444321 124445667899999999
Q ss_pred c---CcccccccccccccCeEEEeCceEEecccccccccCC----Cch----HHH------HhhcchH--H-HHHHHhcC
Q 023017 138 N---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD----AGA----SFY------LSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~----~g~----~~~------l~~~~g~--~-a~~l~l~g 197 (288)
. |.|..+|..++++||.+++.+++.++......|..+. ..- ... +.+.-|+ . +..++-..
T Consensus 66 ~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~ 145 (172)
T cd07015 66 YPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKD 145 (172)
T ss_pred ecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhh
Confidence 9 9999999999999999999999999988875432120 000 111 2222332 2 66777788
Q ss_pred CCCCHHHHHHcCccceecCC
Q 023017 198 AKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~~ 217 (288)
..++++||++.|++|.++.+
T Consensus 146 ~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 146 LSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred cCcCHHHHHHcCCceeeeCC
Confidence 88999999999999999876
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=81.82 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++..+..++.+.|..++.++..+.++|.=. |.|+++.. ...++..+...++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence 567889999999999998877776666644 44443321 1134555667889999999
Q ss_pred cCcccccccccccccC--eEEEeCceEEecccccccccCCCchHH---------------HHhhcchH--H-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~~g~--~-a~~l~l~g 197 (288)
.|.|.++|..++++|| .|++.+++.|.+.....|......-.. .+.+..|. . ..+++-.+
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 145 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERD 145 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence 9999999999999999 688888888876543322211000001 11111221 1 34455566
Q ss_pred CCCCHHHHHHcCcccee
Q 023017 198 AKLNGAEMMACGLATHY 214 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~v 214 (288)
..++|+||++.||||++
T Consensus 146 ~~~sa~eA~~~GliD~i 162 (162)
T cd07013 146 TWLSAREAVEYGFADTI 162 (162)
T ss_pred ccccHHHHHHcCCCCcC
Confidence 66799999999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=97.05 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=105.7
Q ss_pred eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 41 KANSRMAILNRP-----SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 41 ~~~v~~i~ln~p-----~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
.+.|++|.++.+ ...+.++. +.+.+.|+++..|+++|+|||+-. |.|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a---------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA---------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH----------------
Confidence 567888887632 22234443 567888999999999999999976 33332211
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccc------------cccccCCCchH----
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAGAS---- 179 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g~~---- 179 (288)
.+.+.+.+.+++...||+||.+.|.|..||+.++++||.++|.+.+..+...+ ++|+-+..-.+
T Consensus 382 se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~ 461 (618)
T PRK10949 382 SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA 461 (618)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence 12233444456667899999999999999999999999999999766554332 23332211100
Q ss_pred -------------HHHh-----------------hcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHH
Q 023017 180 -------------FYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK 229 (288)
Q Consensus 180 -------------~~l~-----------------~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~ 229 (288)
..+. |.+.....+-+..|+.+++++|++.||||++.. +++....+++
T Consensus 462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~---~~~ai~~a~~ 538 (618)
T PRK10949 462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGD---FDDAVAKAAE 538 (618)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCC---HHHHHHHHHH
Confidence 0011 111111112246899999999999999999965 4444444444
Q ss_pred hhc
Q 023017 230 LVT 232 (288)
Q Consensus 230 l~~ 232 (288)
++.
T Consensus 539 ~a~ 541 (618)
T PRK10949 539 LAK 541 (618)
T ss_pred HcC
Confidence 443
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-08 Score=83.45 Aligned_cols=139 Identities=15% Similarity=0.066 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
..++.++...+...|..++.++..+-|.|.=. |.|+++.. ...++..+...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-------------------g~~I~d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCEEE
Confidence 33788999999999998886654343443322 33333322 11244456677889999
Q ss_pred EEcCccccccccccccc--CeEEEeCceEEecccccccccCCCch---------------HHHHhhcchH--H-HHHHHh
Q 023017 136 ILNGVTMGGGAGVSIPG--TFRVACGKTVFATPETLIGFHPDAGA---------------SFYLSHLPGH--L-GEFLAL 195 (288)
Q Consensus 136 av~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~~~~g~--~-a~~l~l 195 (288)
.+.|.|.+.|..|++++ +.|++.+++.|.+....-|......- ...+....|. . ...++-
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 174 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTD 174 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 99999999999998874 35777777777665543222100000 0112233333 2 445556
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
.+..++|+||++.||||+|+.+
T Consensus 175 ~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 175 RDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred CCccccHHHHHHcCCccEEeec
Confidence 6788999999999999999875
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-09 Score=94.84 Aligned_cols=168 Identities=19% Similarity=0.061 Sum_probs=137.5
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHHHHHHHH
Q 023017 43 NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS 121 (288)
Q Consensus 43 ~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 121 (288)
++..++++ |+ .|..|.++..+|..-++.++.+..+++..+|+.. +.|++|.|..+... +.......++-++++
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vv----g~h~fspa~~m~LlE 139 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVV----GMHFFSPAHWMQLLE 139 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhc----cccccCHHHHHHHHH
Confidence 67778888 54 6999999999999999999999999999999987 89999999988753 233344455667788
Q ss_pred HHHHHhcCCCcEEEEEcCcccccc--cccccccCeEEEe--CceEEecccccccc-cCCCchHHHHhhcchHH-HHHHHh
Q 023017 122 FIYLLGTHLKPHVAILNGVTMGGG--AGVSIPGTFRVAC--GKTVFATPETLIGF-HPDAGASFYLSHLPGHL-GEFLAL 195 (288)
Q Consensus 122 l~~~l~~~~kp~Iaav~G~a~GgG--~~lal~~D~~ia~--~~a~f~~pe~~~Gl-~p~~g~~~~l~~~~g~~-a~~l~l 195 (288)
++....+++.|+.+++||++-.|+ +.++.+|+|++.. ..-..+..+..+++ .|++ -.-.+...+|.. +.+-+-
T Consensus 140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~-~iD~~~t~fGf~~g~~~L~ 218 (380)
T KOG1683|consen 140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPW-LIDSLITKFGFRVGERALA 218 (380)
T ss_pred HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHH-HHHHHHHhcCccccHHHHh
Confidence 999999999999999999999998 8899999999998 45555788888884 4433 333445556766 555667
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
-+.-++..||++-|+++++.|+
T Consensus 219 d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 219 DGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred hccCccHHHHHhhccchhccch
Confidence 7899999999999999999985
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=79.91 Aligned_cols=136 Identities=14% Similarity=0.054 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaa 136 (288)
.++..+..++.+.|..++.++..+.+.|.=. |.|+++..- ..++..+..++.|+++.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~ 99 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-------------------DAIYDTIQFIRPDVQTV 99 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCcEEE
Confidence 3788999999999999987653444444332 333333221 13455566778899999
Q ss_pred EcCcccccccccccccC--eEEEeCceEEecccccc-cccCCCchH------------------HHHhhcchH--H-HHH
Q 023017 137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLI-GFHPDAGAS------------------FYLSHLPGH--L-GEF 192 (288)
Q Consensus 137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~l~~~~g~--~-a~~ 192 (288)
+.|.|.+.|..|+++|| .|++.+++.|.+..... |. ..|.. ..+....|. . ..+
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 177 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK 177 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999 59999999999877642 21 11211 122333333 2 455
Q ss_pred HHhcCCCCCHHHHHHcCccceecCC
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
++-.+..++|+||++.||||+|+++
T Consensus 178 ~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 178 DTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHhcCccccHHHHHHcCCccEEcCc
Confidence 6667889999999999999999875
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=78.12 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++.+...++...+..++.++..+.++|.=. |.|+|+..- ..++..+...+.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 678889999999999998765555555433 333333221 123444556789999999
Q ss_pred cCcccccccccccccC--eEEEeCceEEecccccccccCCCchHHH-----------------HhhcchH--H-HHHHHh
Q 023017 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGH--L-GEFLAL 195 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~~~~g~--~-a~~l~l 195 (288)
.|.|.++|..+++++| .|++.+++.|.+.+...+..-. .... +....|. . ...++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 7999999999998876543222 1111 1111222 2 345555
Q ss_pred cCCCCCHHHHHHcCcccee
Q 023017 196 TGAKLNGAEMMACGLATHY 214 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~v 214 (288)
.+..++++||+++||+|+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 7888999999999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.4e-06 Score=72.88 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-.++++-.....+.++.+++. .+-+|-|.-.++.+. |.+-. .....+.+.+.+..+...+.|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE-------------~~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE-------------ERGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH-------------hccHHHHHHHHHHHHhCCCCCEE
Confidence 3567888999999999988755 466676665544442 32211 01123455567777889999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
+.|-|.|.|||......||++++.+++.++. +.|.+++..+....--.. +.+.. ++++.++++.|+||+
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ 210 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDK 210 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcE
Confidence 9999999999888888999999999887763 334443333332211112 44442 789999999999999
Q ss_pred ecCCC
Q 023017 214 YSVSE 218 (288)
Q Consensus 214 vv~~~ 218 (288)
|+|..
T Consensus 211 ii~e~ 215 (256)
T PRK12319 211 VIPEH 215 (256)
T ss_pred ecCCC
Confidence 99853
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=77.35 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
+|.++...+.+.|..++.++..+ .+.|.+ .|+|+... ..+...+..++.|+++
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INS------pGG~v~~g-------------------~~i~~~i~~~~~~v~t 79 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINS------PGGDVDAG-------------------LAIYDAIRSSKAPVTT 79 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEE------CEBCHHHH-------------------HHHHHHHHHSSSEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcC------CCCccHHH-------------------HHHHHHHHhcCCCeEE
Confidence 88999999999888775333223 233344 44444321 2355567788999999
Q ss_pred EEcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHHH---------------HhhcchH--H-HHHHHh
Q 023017 136 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY---------------LSHLPGH--L-GEFLAL 195 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~---------------l~~~~g~--~-a~~l~l 195 (288)
.+.|.|.+.|..++++||. |++.+++.|.+.+...+.......... +....|. . ..+++-
T Consensus 80 ~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 159 (182)
T PF00574_consen 80 VVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMD 159 (182)
T ss_dssp EEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCS
T ss_pred EEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 9999999999999999999 899999999999886555331111100 1111121 1 244444
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
...-++|+||+++||+|+|+.+
T Consensus 160 ~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 160 RDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp STEEEEHHHHHHHTSSSEEESS
T ss_pred CCccccHHHHHHcCCCCEeccC
Confidence 5566899999999999999854
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.7e-07 Score=75.82 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+++++...+.+.|..++..+..+.|.|.=. |.|+++..- ..++..|...+.||++.+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~ag-------------------~aI~d~i~~~~~~V~t~v 88 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDAG-------------------FAIFNMIRFVKPKVFTIG 88 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhCCCCEEEEE
Confidence 778889999999988876333344444432 333333221 134555667899999999
Q ss_pred cCcccccccccccccCe--EEEeCceEEecccccccccCCCchH---------------HHHhhcchH--H-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~~~~g~--~-a~~l~l~g 197 (288)
.|.|.+.|..|+++||- |++.+++.|.+....-|......-. ..+....|. . ...++-..
T Consensus 89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d 168 (197)
T PRK14512 89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRD 168 (197)
T ss_pred EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcC
Confidence 99999999999999985 9999999887766543321111100 011122232 1 34445556
Q ss_pred CCCCHHHHHHcCccceecCC
Q 023017 198 AKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~~ 217 (288)
..++|+||+++||+|+|+++
T Consensus 169 ~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 169 FWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred cccCHHHHHHcCCccEeecC
Confidence 78999999999999999975
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.6e-06 Score=73.73 Aligned_cols=138 Identities=13% Similarity=0.063 Sum_probs=94.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-.++++-.....+.++.+++. .+-+|-|.-.++.++ |.+-.+ ....+.+.+.+..+.....|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 3557899999999999998865 356666655444443 321111 1123445566677889999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
+.|-|.|.|||......||++++.+++.++. +.|.++++.++...--.. |.+. -+++|+++++.|+||+
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~~~a~~aA~~----~~ita~dL~~~giiD~ 266 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDSKKSLDAAEA----LKITSEDLKVLGIIDE 266 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcchhhHHHHHHH----cCCCHHHHHhCCCCeE
Confidence 9999999888865555699999999988773 345555444333222212 3333 5899999999999999
Q ss_pred ecCC
Q 023017 214 YSVS 217 (288)
Q Consensus 214 vv~~ 217 (288)
|+|.
T Consensus 267 ii~E 270 (322)
T CHL00198 267 IIPE 270 (322)
T ss_pred eccC
Confidence 9974
|
|
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=79.21 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCccc
Q 023017 63 GAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (288)
Q Consensus 63 ~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~ 142 (288)
.+.+.+.|+.+..|++++.|+|.=. |.|+.... .+.+.+.++++..-. ||++.|++.|.
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a----------------s~~i~~~l~~l~~~~-PV~v~v~~~AA 140 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA----------------SELIARALKRLRAKK-PVVVSVGGYAA 140 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH----------------HHHHHHHHHHHhhcC-CEEEEECCeec
Confidence 5666788888899999999998754 33332221 122334444454444 99999999999
Q ss_pred ccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc-------------------------------------
Q 023017 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL------------------------------------- 185 (288)
Q Consensus 143 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~------------------------------------- 185 (288)
.||..++++||.+||++.+..|--.+..+. |.. ..++-++
T Consensus 141 SGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~--~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 141 SGGYYIALAADKIVADPSSITGSIGVISGA-PNF--EELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred chhhhhhccCCEEEecCCceeeeceeEEec-CCH--HHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988865554442 211 1212111
Q ss_pred ------------chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHH
Q 023017 186 ------------PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK 229 (288)
Q Consensus 186 ------------~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~ 229 (288)
.... ...-+.+|+-+++++|++.||||++.. +++....+++
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~---~~~av~~~~~ 271 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGG---LDDAVKDAAE 271 (317)
T ss_pred HHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCC---HHHHHHHHHH
Confidence 0000 112356899999999999999999964 3444444433
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-05 Score=71.82 Aligned_cols=136 Identities=13% Similarity=0.071 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++-.....+.++.+++- .+-+|-|.-.+++++ |.+-.+ ....+.+.+.+..+.....|+|+
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~Is 194 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVIC 194 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEEE
Confidence 567889999999999988754 466666665444443 221111 11234556677778899999999
Q ss_pred EEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH-H-HHHHHhcCCCCCHHHHHHcCccce
Q 023017 136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-GEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~-~-a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
.|-|.|.|||......||++++.+++.++. +.|.++++. |-+-... . +.+. -++++.++++.|+||+
T Consensus 195 VViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~I-l~kd~~~a~~aae~----~~~ta~~l~~~G~iD~ 263 (316)
T TIGR00513 195 TVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAI-LWKDASKAPKAAEA----MKITAPDLKELGLIDS 263 (316)
T ss_pred EEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHH-hccchhhHHHHHHH----ccCCHHHHHHCCCCeE
Confidence 999999777776555799999999987762 344444433 4332211 1 3332 5678999999999999
Q ss_pred ecCC
Q 023017 214 YSVS 217 (288)
Q Consensus 214 vv~~ 217 (288)
|+|.
T Consensus 264 II~e 267 (316)
T TIGR00513 264 IIPE 267 (316)
T ss_pred eccC
Confidence 9974
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=73.00 Aligned_cols=137 Identities=13% Similarity=0.062 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+|.++..++...|-.++.++..+-+.|.=. |.|+++.. ...++..+...+.|+...+
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv~ 95 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-------------------GLAIYDTMQFVKPDVHTIC 95 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEEE
Confidence 899999999999999885543444443322 33333321 1135555777899999999
Q ss_pred cCcccccccccccccC--eEEEeCceEEecccccccccCCCchH-----------------HHHhhcchHH---HHHHHh
Q 023017 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS-----------------FYLSHLPGHL---GEFLAL 195 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~-----------------~~l~~~~g~~---a~~l~l 195 (288)
.|.|.+.|..|++++| -|++.++++|.+.....|+.-+. +. ..+....|.. ..+++-
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~ 174 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME 174 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999 69999999999888765521111 11 1112222321 345556
Q ss_pred cCCCCCHHHHHHcCccceecCCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
....++|+||+++||||+|+.+.
T Consensus 175 r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 175 RDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred cCccCCHHHHHHcCCCcEEeecC
Confidence 66779999999999999998754
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-06 Score=71.99 Aligned_cols=136 Identities=15% Similarity=0.041 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++.++..++...|..++.++..+-+.|.=. |.|+|+..- ..++..+...+.|+...+
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~g-------------------~~I~d~l~~~~~~v~t~~ 91 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITAG-------------------LAIYDTMQFIKPDVSTIC 91 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 778888889998888887654444444432 334443221 124444566677788888
Q ss_pred cCcccccccccccccC--eEEEeCceEEecccccccccCCCchH---------------HHHhhcchH--H-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~~~~g~--~-a~~l~l~g 197 (288)
.|.|.+.|..+++++| .|++.+++.|.+.+...|......-. ..+.+..|. . ..+++-.+
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~ 171 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD 171 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 8999999998888665 69999999999977654432211111 112233333 2 45566677
Q ss_pred CCCCHHHHHHcCccceecC
Q 023017 198 AKLNGAEMMACGLATHYSV 216 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~ 216 (288)
..++|+||+++||+|+|+.
T Consensus 172 ~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 172 FFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred ccCcHHHHHHcCCccEEec
Confidence 8899999999999999974
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=73.29 Aligned_cols=137 Identities=14% Similarity=0.068 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
..++++-.....+.++.+++. .+-+|-|.-.+++++ |.+-++ ....+.+.+.+..+.....|+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~p-G~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAYA-GIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCC-CHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 458899999999999988865 366666655444432 221111 12234566677788999999999
Q ss_pred EEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCcccee
Q 023017 136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHY 214 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~v 214 (288)
.|-|.+.+||.....+||++++.+++.++. +.|.++++.++....-.. +.+. -.++|.++++.|+||+|
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAea----lkitA~dL~~~GiID~I 334 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAEA----LRITAAELVKLGVVDEI 334 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHHH----cCCCHHHHHhCCCCeEe
Confidence 999999666654445689999999887652 344454444433322222 3332 38999999999999999
Q ss_pred cCC
Q 023017 215 SVS 217 (288)
Q Consensus 215 v~~ 217 (288)
+|.
T Consensus 335 I~E 337 (431)
T PLN03230 335 VPE 337 (431)
T ss_pred ccC
Confidence 974
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-05 Score=76.76 Aligned_cols=137 Identities=13% Similarity=0.016 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-+++++-.....+.++.++.. .+-+|-|.-.+++++ |....+ ....+.+.+.+..+.....|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence 3467788888889988888754 356666655444443 222221 1223556677788889999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH--HHHHHhcCCCCCHHHHHHcCccc
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLAT 212 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~--a~~l~l~g~~~~a~eA~~~Glv~ 212 (288)
+.|-|.|.|||......||+++|.+++.++. +.|.+++ ..|-+-.... |.+ .-+++|++++++|+||
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaA-sILwkd~~~A~eAAe----~lkiTa~dL~~lGiiD 353 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACA-AILWKSAKAAPKAAE----KLRITAQELCRLQIAD 353 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHH-HHHhcCcccHHHHHH----HcCCCHHHHHhCCCCe
Confidence 9999999888887777799999999887652 3444444 4343332222 333 3589999999999999
Q ss_pred eecCC
Q 023017 213 HYSVS 217 (288)
Q Consensus 213 ~vv~~ 217 (288)
+|+|.
T Consensus 354 ~IIpE 358 (762)
T PLN03229 354 GIIPE 358 (762)
T ss_pred eeccC
Confidence 99984
|
|
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=79.19 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=92.3
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (288)
++.|++|.++.+=..+ -...+-+++...+..+..+ ..|||+-. |.|+....... ..
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~----------------a~ 144 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL----------------AA 144 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH----------------HH
Confidence 4678888887542111 1123345566656555433 46777654 33333221100 00
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCch----------------------
Q 023017 121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA---------------------- 178 (288)
Q Consensus 121 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------------- 178 (288)
..+.++....||+++.+++.|..||+.++++||.++|.+.+.++...+-.. .|....
T Consensus 145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~ 223 (330)
T PRK11778 145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLT 223 (330)
T ss_pred HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCC
Confidence 113345667899999999999999999999999999999888876554211 111100
Q ss_pred -----H----HHHhhcch---------------HHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 023017 179 -----S----FYLSHLPG---------------HLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (288)
Q Consensus 179 -----~----~~l~~~~g---------------~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 220 (288)
+ ..+...+. ..-.+-+.+|+.+++++|++.||||++...+++
T Consensus 224 pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 224 LFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 0 00111110 011222468999999999999999999765543
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=71.68 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-.++++-.....+.++.+++- .+-+|-|.-.+++++ |.+-.+ ....+.+.+.+..+.....|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 3557889999999999888754 466777766544444 322211 1123555677788899999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHHHHcCcccee
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~v 214 (288)
+.|-|.|.|||......||++++.+++.++ +.++-|....|-+-... +.+..- .-.+++.++++.|+||+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~~-a~~aae-~~~ita~~l~~~g~iD~I 264 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDASK-APEAAE-AMKITAQDLKELGIIDEI 264 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCchh-HHHHHH-HcCCCHHHHHHCCCceEe
Confidence 999999988877655569999999988776 43434444444433222 222211 456899999999999999
Q ss_pred cCC
Q 023017 215 SVS 217 (288)
Q Consensus 215 v~~ 217 (288)
+|.
T Consensus 265 I~E 267 (319)
T PRK05724 265 IPE 267 (319)
T ss_pred ccC
Confidence 974
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.5e-06 Score=69.72 Aligned_cols=137 Identities=11% Similarity=0.045 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFV--SMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vv--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 133 (288)
-.+|..+...+...|..++..+.-+-+ .|-+.|+...+| ..++..|...+-||
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG-------------------------laIyd~m~~~~~~V 115 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG-------------------------LGIYDTMQFISSDV 115 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH-------------------------HHHHHHHHhcCCCE
Confidence 347888888888887777643322322 334444443333 12445567788999
Q ss_pred EEEEcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHH---------------HHhhcchHH---HHHH
Q 023017 134 VAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGHL---GEFL 193 (288)
Q Consensus 134 Iaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~~g~~---a~~l 193 (288)
...+.|.|.+.|..|++++|. |++.++++|.+.....|......-.. .+.+..|.. ..+.
T Consensus 116 ~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~ 195 (221)
T PRK14514 116 ATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD 195 (221)
T ss_pred EEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999999996 99999999998776544322111010 011223321 3445
Q ss_pred HhcCCCCCHHHHHHcCccceecCC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
+-....++|+||++.||||+|+..
T Consensus 196 ~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 196 SDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred hhcCccCCHHHHHHcCCccEEeec
Confidence 566778999999999999999864
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00019 Score=62.45 Aligned_cols=156 Identities=12% Similarity=-0.002 Sum_probs=93.6
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAW-ENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~-~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|.-..|.=|.|. ..++.+-.....+.+... +.+.++-+|.|.-.++.. .|.. .+.....+.+
T Consensus 30 ~G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~-~g~~-------------aE~~G~~~a~ 93 (238)
T TIGR03134 30 AGGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQA-YGRR-------------EELLGINQAL 93 (238)
T ss_pred CCEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-CCHH-------------HHHHHHHHHH
Confidence 3443334445553 278878888888888885 555777777766543222 2211 1122223333
Q ss_pred HHHHHH---HhcCCCcEEEEEcCcccccccc-cccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHh
Q 023017 120 YSFIYL---LGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL 195 (288)
Q Consensus 120 ~~l~~~---l~~~~kp~Iaav~G~a~GgG~~-lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l 195 (288)
.+++.. +...+.|+|+.|-|.++|||+. +.+.+|.++|.+++.++ ..++-++...+-+-... ..++.-
T Consensus 94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~~~-~~e~a~ 165 (238)
T TIGR03134 94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSVEE-LEALAK 165 (238)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCHhH-HHHHHH
Confidence 444444 4456699999999999988774 55568888887666554 55555555444443332 222221
Q ss_pred c--CCCCCHHHHHHcCccceecCCCCh
Q 023017 196 T--GAKLNGAEMMACGLATHYSVSEKL 220 (288)
Q Consensus 196 ~--g~~~~a~eA~~~Glv~~vv~~~~l 220 (288)
. --..+.+.+.++|+||+|+++.+-
T Consensus 166 ~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 166 SSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred hhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 1 124677789999999999987653
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0001 Score=65.27 Aligned_cols=140 Identities=12% Similarity=0.084 Sum_probs=93.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcC
Q 023017 54 ALNALNTNMGAKLNKLFKAWEND----PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH 129 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d----~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 129 (288)
..-+++...-..+..+++.+.+| ..+-+|.|.-+ +|..+.+-. .....+. .+.....+++..
T Consensus 71 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-----gGaRlqEg~--------~~L~~~a-~i~~~~~~ls~~ 136 (274)
T TIGR03133 71 QGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT-----GGVRLQEAN--------AGLIAIA-EIMRAILDARAA 136 (274)
T ss_pred cCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC-----CCcChhhhH--------HHHHHHH-HHHHHHHHHhCC
Confidence 45678888889999999999762 12346666653 344443211 1111111 122223334454
Q ss_pred CCcEEEEEcCc--ccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH--H-HHHHHhcCCCCCHHH
Q 023017 130 LKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLALTGAKLNGAE 204 (288)
Q Consensus 130 ~kp~Iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~--~-a~~l~l~g~~~~a~e 204 (288)
.|+|+.+.|+ |.||+..++.+||++|+++++.+++. +........|. . ..+-.|..+.+.++.
T Consensus 137 -vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~l~~~~lGG~~ 204 (274)
T TIGR03133 137 -VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALVWRTTGGKH 204 (274)
T ss_pred -CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhcccccccchHh
Confidence 9999999999 89999999999999999998877652 22223333442 2 555566677788888
Q ss_pred HHHcCccceecCCCC
Q 023017 205 MMACGLATHYSVSEK 219 (288)
Q Consensus 205 A~~~Glv~~vv~~~~ 219 (288)
....|++|.+++++.
T Consensus 205 ~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 205 RFLSGDADVLVEDDV 219 (274)
T ss_pred HhhcccceEEeCCHH
Confidence 888999999998754
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=67.63 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGF--VSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~v--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.++.++...+...|-.++.++.-+- +.|-+.|+...+| ..++..|...+-||.
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~G-------------------------laIyd~m~~~~~~V~ 89 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAG-------------------------LAIYDTMRYIKAPVS 89 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhH-------------------------HHHHHHHHhcCCCEE
Confidence 4888999999888888876433222 2334444332222 135556777888999
Q ss_pred EEEcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHHH-----------------HhhcchHH---HHH
Q 023017 135 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GEF 192 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~~~~g~~---a~~ 192 (288)
..+.|.|.+.|..|++++|- |++.+++++.+.....|.. +-...+ +.+..|.. -.+
T Consensus 90 Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 90 TICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999995 9999999999888765541 111111 11223321 344
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCC
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEK 219 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~ 219 (288)
++-....++|+||++.||||+|+++..
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEeccCC
Confidence 455667799999999999999997644
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=67.35 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaa 136 (288)
.+|.+...++...|..++.++..+-+.+.=. |.|+++..- ..++..|...+-||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-------------------LGIFDTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence 3889999999999999986543343443322 333333211 13455566778899999
Q ss_pred EcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHH---------------HHhhcchHH---HHHHHhc
Q 023017 137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGHL---GEFLALT 196 (288)
Q Consensus 137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~~g~~---a~~l~l~ 196 (288)
+.|.|.+.|..|++++|- |++.++++|.+.....|..-...-.. .+.+..|.. ..+++-.
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999985 88999999988776533211111011 111222321 3444556
Q ss_pred CCCCCHHHHHHcCccceecCCC
Q 023017 197 GAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 197 g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
...++|+||++.||+|+|++..
T Consensus 170 d~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CcCCCHHHHHHcCCCcEEeccC
Confidence 6779999999999999999764
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=68.33 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=78.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.+.++.+...++.++++...++..+ .++|...|+ ++.. ..++...+.+++.|++
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~TpGG------~v~A-------------------A~~I~~~l~~~~~~v~ 122 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPGG------LVDA-------------------AEQIARALREHPAKVT 122 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCce-EEEEECCCC------cHHH-------------------HHHHHHHHHhCCCCEE
Confidence 4668889999999999998877655 455555433 2211 1235556778899999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHH
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF 180 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 180 (288)
+.|+..|+.+|..++++||-+++.+++.+|--+..+|-.|..+...
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~sil~ 168 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASILK 168 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHHHH
Confidence 9999999999999999999999999999999999999988654433
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.9e-05 Score=66.20 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=100.2
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|.-..|.-|.+. ..-+++....+.+.++++.+.+. .+-+|.|.-.| |+.+.+ + ...... ....
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE-------g-i~sL~~-~ak~ 183 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE-------G-LLSLMQ-MAKT 183 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh-------h-hhHHHh-HHHH
Confidence 4444444455554 66889999999999999999866 47788887654 333322 0 001111 1222
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccc-cccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~-lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~ 198 (288)
...+.++.....|.|+.+.|+|.||+.. +++.+|++|+.+++.+++-.. ..+...++ .++ ..+
T Consensus 184 ~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp-----------rvie~~~~---e~l--pe~ 247 (292)
T PRK05654 184 SAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP-----------RVIEQTVR---EKL--PEG 247 (292)
T ss_pred HHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH-----------HHHHhhhh---hhh--hhh
Confidence 3344456677899999999999999664 577899999999887776322 11111112 111 112
Q ss_pred CCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 199 KLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
--+++-+.+.|+||.|+++.++.....++
T Consensus 248 ~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~ 276 (292)
T PRK05654 248 FQRAEFLLEHGAIDMIVHRRELRDTLASL 276 (292)
T ss_pred hcCHHHHHhCCCCcEEECHHHHHHHHHHH
Confidence 23567778899999999998887655555
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.5e-05 Score=67.35 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=90.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcC
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDP----NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH 129 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~----~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 129 (288)
..-+++......+..+++.+.++. -+-+|.|.-.| |..+.+-. .....+ ..+...+..++..
T Consensus 80 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~--------~~L~~~-a~i~~~~~~ls~~ 145 (301)
T PRK07189 80 MGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEAN--------AGLAAI-AEIMRAIVDLRAA 145 (301)
T ss_pred cCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchH--------HHHHHH-HHHHHHHHHHhCC
Confidence 567788999999999999998765 25667766643 33333211 111111 1222233334555
Q ss_pred CCcEEEEEcCc--ccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH--H-HHHHHhcCCCCCHHH
Q 023017 130 LKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLALTGAKLNGAE 204 (288)
Q Consensus 130 ~kp~Iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~--~-a~~l~l~g~~~~a~e 204 (288)
.|+|+.+.|+ |+||+...+.+||++|+++++.+++. +........|. . ..+-.+.++.+.+..
T Consensus 146 -VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~~vw~~lGG~h 213 (301)
T PRK07189 146 -VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALVWRTTGGKH 213 (301)
T ss_pred -CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhcccccccCcce
Confidence 9999999999 99999999999999999998877652 12222222331 1 444444444455555
Q ss_pred HHHcCccceecCCCC
Q 023017 205 MMACGLATHYSVSEK 219 (288)
Q Consensus 205 A~~~Glv~~vv~~~~ 219 (288)
....|.+|.+++++.
T Consensus 214 ~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 214 RYLSGLADALVDDDV 228 (301)
T ss_pred eeecccceEEeCCHH
Confidence 566999999998764
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00023 Score=63.56 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=99.2
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|.-..|.-+++. ..-+++....+.+.++++.+.+. .+-+|.|...|+. -+.+ +. ...... ...
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE-------g~-~sL~~~-ak~ 182 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE-------AL-LSLMQM-AKT 182 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc-------ch-hHHHhH-HHH
Confidence 4443334444443 56789999999999999999754 4678888775443 2221 11 111111 222
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccc-cccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~-lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~ 198 (288)
...+.++.....|.|+++.|+|.||+.. +++.+|++||.+++.+++-..+ .+...+|. + +.-+
T Consensus 183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e---~--lpe~ 246 (285)
T TIGR00515 183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE---K--LPEG 246 (285)
T ss_pred HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC---c--cchh
Confidence 2344456677899999999999999654 5679999999999888763322 12222221 1 1112
Q ss_pred CCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 199 KLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
--+++-+.+.|+||.|+++.++.....++
T Consensus 247 ~q~ae~~~~~G~vD~iv~~~~~r~~l~~~ 275 (285)
T TIGR00515 247 FQTSEFLLEHGAIDMIVHRPEMKKTLASL 275 (285)
T ss_pred cCCHHHHHhCCCCcEEECcHHHHHHHHHH
Confidence 23566677899999999998877655544
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.9e-06 Score=67.35 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=58.8
Q ss_pred HhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEeccccc------------ccc---------cCCCc-----hH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGF---------HPDAG-----AS 179 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl---------~p~~g-----~~ 179 (288)
+....||+||.++|.|..+|+.|+.+||-+++.+.+.++...+. +|+ ....+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 34679999999999999999999999999999999888875543 222 11111 00
Q ss_pred ----HHHhhc-----------------chHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 023017 180 ----FYLSHL-----------------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (288)
Q Consensus 180 ----~~l~~~-----------------~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 220 (288)
..+.+. +.....+-+..|..+++++|++.||||++...+++
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~ 143 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEA 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHH
Confidence 001111 11111112578999999999999999999654443
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=71.22 Aligned_cols=85 Identities=13% Similarity=-0.055 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcc
Q 023017 62 MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT 141 (288)
Q Consensus 62 ~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a 141 (288)
.+.++.+.|+++.+|+.|++|||.-.+ +.|..+..+ +.+.+.+..+....|||||..++.+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~~ 137 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNYS 137 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEcccc
Confidence 577999999999999999999999752 123333221 2233344456667899999988775
Q ss_pred cccccccccccCeEEEeCceEEecc
Q 023017 142 MGGGAGVSIPGTFRVACGKTVFATP 166 (288)
Q Consensus 142 ~GgG~~lal~~D~~ia~~~a~f~~p 166 (288)
-+|+.|+.+||-+++.+.+.+++.
T Consensus 138 -s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 138 -QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred -chhhhhhhhCCEEEECCCceEEee
Confidence 678999999999999998877653
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00073 Score=60.39 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=89.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH-HhcCCCc
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL-LGTHLKP 132 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~kp 132 (288)
..-+++...-+.+.++++.+.+.. +-+|++... +|+-+.+-. ..+..+.+ ....+.+ ......|
T Consensus 145 ~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~S-----GGARmQEg~--------~sL~qmak-~saa~~~~~~~~~vP 209 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIEYATNES-LPLIIVCAS-----GGARMQEGS--------LSLMQMAK-ISSALYDYQSNKKLF 209 (296)
T ss_pred cccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECC-----CCccccccc--------hhhhhhHH-HHHHHHHHHHcCCCC
Confidence 567899999999999999998654 677887774 444443211 01111111 1111222 2256799
Q ss_pred EEEEEcCccccccccc-ccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHHHHcCcc
Q 023017 133 HVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLA 211 (288)
Q Consensus 133 ~Iaav~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA~~~Glv 211 (288)
.|+.+.|+|.||+... ++.||++|+.+++.+++... ......+|.. +.-+--+++-.++.|+|
T Consensus 210 ~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP-----------rVIe~t~ge~-----lpe~fq~ae~l~~~G~v 273 (296)
T CHL00174 210 YISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK-----------RVIEQTLNKT-----VPEGSQAAEYLFDKGLF 273 (296)
T ss_pred EEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH-----------HHHHHhcCCc-----CCcccccHHHHHhCcCc
Confidence 9999999999998865 67799999987877664322 1111112211 11122356667889999
Q ss_pred ceecCCCChhHHHHHH
Q 023017 212 THYSVSEKLPLIEEEL 227 (288)
Q Consensus 212 ~~vv~~~~l~~~~~~~ 227 (288)
|.+|++.++......+
T Consensus 274 D~iV~r~~lr~~l~~l 289 (296)
T CHL00174 274 DLIVPRNLLKGVLSEL 289 (296)
T ss_pred eEEEcHHHHHHHHHHH
Confidence 9999988877655544
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=63.04 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=100.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.=|++. ..-+++++..+...+.++.+++ ..+-+|.|.-.++ |..|.+- +....++...+++..
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~~-------------E~~g~~~~~a~~~~a 383 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVNQ-------------EYGGIIRHGAKVLYA 383 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHHH-------------HHHHHHHHHHHHHHH
Confidence 3334443 3456999999999999998875 4577777776544 4444221 112234455677888
Q ss_pred HhcCCCcEEEEEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHHhh-cch----HH-H--HHH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPG----HL-G--EFL 193 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-~~g----~~-a--~~l 193 (288)
+.....|.|+.|-|.+.|||+.-.. .+|+++|.+++.++ +.++-++...+-+ .+. .. + ..+
T Consensus 384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~ 456 (512)
T TIGR01117 384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRKQKI 456 (512)
T ss_pred HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence 8899999999999999888654333 38999998887665 3333333332221 110 01 1 111
Q ss_pred -HhcCCCCCHHHHHHcCccceecCCCChhHHHHH
Q 023017 194 -ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226 (288)
Q Consensus 194 -~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~ 226 (288)
-..-+..++..+.+.|+||.|+++.+.......
T Consensus 457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~ 490 (512)
T TIGR01117 457 AEYREEFANPYKAAARGYVDDVIEPKQTRPKIVN 490 (512)
T ss_pred HHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHH
Confidence 112234578899999999999999877654433
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0018 Score=62.60 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=87.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccC--ChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCC
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG--DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 131 (288)
..-+++......+.++++.+.++. +-+|.|.- |+|. .+.+... ....+.+ +..-..++.. ..
T Consensus 69 ~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~--------~l~~~g~-i~~~~~~~~~-~i 132 (493)
T PF01039_consen 69 LGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVE--------SLMGMGR-IFRAIARLSG-GI 132 (493)
T ss_dssp GGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHH--------HHHHHHH-HHHHHHHHHT-TS
T ss_pred ecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhh--------hhhhhHH-HHHHHHHHhc-CC
Confidence 667899999999999999998764 56666665 4444 4443221 1111122 2233344556 99
Q ss_pred cEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHH-----
Q 023017 132 PHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEM----- 205 (288)
Q Consensus 132 p~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA----- 205 (288)
|+|+++.|+|.|||..++..||++|+.++ +.+++. |+...+. .+|+.++.++.
T Consensus 133 P~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv~~-~~Ge~~~~~~lgG~~~ 191 (493)
T PF01039_consen 133 PQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVVES-ATGEEVDSEELGGADV 191 (493)
T ss_dssp -EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHHHH-HHSSCTSHHHHHBHHH
T ss_pred CeEEEEccccccchhhcccccCccccCccceEEEec--------------------ccccccc-ccCccccchhhhhhhh
Confidence 99999999999999999999999999986 666532 1111111 34677777653
Q ss_pred --HHcCccceecCCCC
Q 023017 206 --MACGLATHYSVSEK 219 (288)
Q Consensus 206 --~~~Glv~~vv~~~~ 219 (288)
...|.+|.++++++
T Consensus 192 h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 192 HAAKSGVVDYVVDDEE 207 (493)
T ss_dssp HHHTSSSSSEEESSHH
T ss_pred hcccCCCceEEEechH
Confidence 46899999998764
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=61.51 Aligned_cols=148 Identities=10% Similarity=0.135 Sum_probs=105.3
Q ss_pred eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCcccccCChhhHHHhhccCChHHHHHHHHH
Q 023017 40 GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT 118 (288)
Q Consensus 40 ~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 118 (288)
-++.|..+.++. .+++.+.+.+.+.++.++++.. -++||.= +++. +.+.
T Consensus 24 ~~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG------------------------l~~s 73 (436)
T COG1030 24 AEKKVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGG------------------------LLDS 73 (436)
T ss_pred cCCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc------------------------hHHH
Confidence 355677777754 4999999999999999997763 3344332 1111 1234
Q ss_pred HHHHHHHHhcCCCcEEEEEc---CcccccccccccccCeEEEeCceEEecccccccc---cCCCc-hHHH------Hhhc
Q 023017 119 LYSFIYLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF---HPDAG-ASFY------LSHL 185 (288)
Q Consensus 119 ~~~l~~~l~~~~kp~Iaav~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl---~p~~g-~~~~------l~~~ 185 (288)
+.++.+.+.+.|.|++..+. ++|..+|..++++||+..+++.+.++--..-.+- .+... .... +++.
T Consensus 74 m~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~ 153 (436)
T COG1030 74 MRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEE 153 (436)
T ss_pred HHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHH
Confidence 55788889999999888884 4799999999999999999999988865543222 11111 1111 2233
Q ss_pred chH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 023017 186 PGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 186 ~g~--~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
-|+ . |.+++.....++++||++.|++|-+..+
T Consensus 154 ~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 154 RGRNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred cCCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 333 2 7889999999999999999999988654
|
|
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00043 Score=58.29 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSM--KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
++..+...+...+-.++.++..+-+.| -+.|+...+|. .++..|...+.||..
T Consensus 36 I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~-------------------------AIydtm~~ik~~V~t 90 (200)
T COG0740 36 IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL-------------------------AIYDTMQFIKPPVST 90 (200)
T ss_pred echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhH-------------------------HHHHHHHhcCCCeEE
Confidence 444455555555555555544444444 45566666552 245557788999999
Q ss_pred EEcCcccccccccccccCeE--EEeCceEEecccccccccCCCchHHH-----------------HhhcchHH---HHHH
Q 023017 136 ILNGVTMGGGAGVSIPGTFR--VACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GEFL 193 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~~~~g~~---a~~l 193 (288)
.+-|.|...|..|++++|.. ++.+++++-+....-|+ -+. ++-. +....|.. -...
T Consensus 91 i~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~-~G~-a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d 168 (200)
T COG0740 91 ICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGA-QGQ-ASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKD 168 (200)
T ss_pred EEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccC-ccC-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 99999999999999999986 88888888776665333 211 1110 11112221 1222
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEK 219 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~ 219 (288)
.-....++|+||+++||+|+|....+
T Consensus 169 ~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 169 TDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred hcccccCCHHHHHHcCCcceeccccc
Confidence 33556699999999999999987654
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00054 Score=67.66 Aligned_cols=87 Identities=15% Similarity=0.023 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCc
Q 023017 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (288)
Q Consensus 61 ~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~ 140 (288)
-.+.++.++|+++.+|+.|++|||.-.+. .|..+.. .+.+.+.+..+....||+||. ...
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~----------------~~eI~~ai~~fk~sGKpVvA~-~~~ 154 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPS----------------MQYIGKALREFRDSGKPVYAV-GDS 154 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHH----------------HHHHHHHHHHHHHhCCeEEEE-ecC
Confidence 34568999999999999999999998631 1222211 122334455566778999986 444
Q ss_pred ccccccccccccCeEEEeCceEEeccc
Q 023017 141 TMGGGAGVSIPGTFRVACGKTVFATPE 167 (288)
Q Consensus 141 a~GgG~~lal~~D~~ia~~~a~f~~pe 167 (288)
+.-+++.|+.+||-+++.+.+.+++..
T Consensus 155 ~~s~~YyLASaAD~I~l~P~G~v~~~G 181 (618)
T PRK10949 155 YSQGQYYLASFANKIYLSPQGVVDLHG 181 (618)
T ss_pred ccchhhhhhhhCCEEEECCCceEEEee
Confidence 456789999999999999988776543
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0016 Score=55.93 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
..+.++.+.+...|-.++.++..+ -+-|-+.|+...+|-=+.... ....++..|...+-|+.
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~----------------~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFET----------------EAFAICDTMRYIKPPVH 111 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccc----------------cHHHHHHHHHhcCCCeE
Confidence 445558888888888887544323 234456666555551111110 11234555667788899
Q ss_pred EEEcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHHH-----------------HhhcchHH---HHH
Q 023017 135 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GEF 192 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~~~~g~~---a~~ 192 (288)
..+-|.|.+.+..|++++|- |++.++++|.+.....|.. +-..-+ +....|.. -.+
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~ 189 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSK 189 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999995 9999999999887764432 111111 11112211 123
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCC
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
.+-....++|+||+++||||+|+.+.
T Consensus 190 d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 190 DTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 33445669999999999999998653
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0039 Score=60.42 Aligned_cols=136 Identities=16% Similarity=0.224 Sum_probs=82.7
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-+... +.-+++....+.+.++++.+.++. +-+|.|.-.| |+.+.+-. .....+.+.+... .
T Consensus 86 v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~--------~~l~~~~~~~~~~-~- 149 (512)
T TIGR01117 86 AFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAV--------DALKGYGDIFYRN-T- 149 (512)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccc--------hhhhhHHHHHHHH-H-
Confidence 3334433 567889999999999999998765 5666666533 33332210 0011111111111 1
Q ss_pred HhcCCCcEEEEEcCcccccccccccccCeEEEeCce-EEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~e 204 (288)
...-..|.|+++.|+|.||+......||++|+.+++ .+.+ + +...+.. .+|+.++++|
T Consensus 150 ~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~----------a-GP~vv~~----------~~Ge~v~~e~ 208 (512)
T TIGR01117 150 IASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI----------T-GPQVIKT----------VTGEEVTAEQ 208 (512)
T ss_pred HHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe----------c-ChHHHHh----------hcCcccchhh
Confidence 123458999999999999998887899999999853 3443 1 1111211 3345555544
Q ss_pred H-----H--HcCccceecCCCC
Q 023017 205 M-----M--ACGLATHYSVSEK 219 (288)
Q Consensus 205 A-----~--~~Glv~~vv~~~~ 219 (288)
. . .-|.+|.+++++.
T Consensus 209 lGGa~~h~~~sGv~d~~~~de~ 230 (512)
T TIGR01117 209 LGGAMAHNSVSGVAHFIAEDDD 230 (512)
T ss_pred cchHHHhccccceeEEecCChH
Confidence 4 2 5899999988754
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.013 Score=57.44 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=85.6
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-|.+. +.-+++......+.++++.+.+.. +-+|.|.-.|+.+-.+ ....+. ....+ -.+..-..+
T Consensus 133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~~---------~~~~~-g~if~~~~~ 200 (569)
T PLN02820 133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVFP---------DRDHF-GRIFYNQAR 200 (569)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-cccccc---------hHhHH-HHHHHHHHH
Confidence 3344443 568899999999999999998654 6677776644433211 000010 00011 111122233
Q ss_pred HhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~e 204 (288)
+.....|.|+++-|+|.|||......||++|++++ +.+.+ + +...+.. .+|+.++++|
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~----------a-GP~vV~~----------~~Ge~v~~ee 259 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL----------A-GPPLVKA----------ATGEEVSAED 259 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe----------c-CHHHHHh----------hcCcccCHHH
Confidence 55667999999999999999999999999999874 44443 1 1111111 3455556555
Q ss_pred H-----H--HcCccceecCCCC
Q 023017 205 M-----M--ACGLATHYSVSEK 219 (288)
Q Consensus 205 A-----~--~~Glv~~vv~~~~ 219 (288)
. + ..|.+|.+++++.
T Consensus 260 LGGa~~h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 260 LGGADVHCKVSGVSDHFAQDEL 281 (569)
T ss_pred hCCHHHhcccccccccccCchH
Confidence 4 2 3788888887754
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.006 Score=53.42 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-++..-.=+.+.++++.+-.+. +.+|+++.+ .|+-+.+-. -.+.+ .......+.++.....|.|
T Consensus 135 gGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aS-----GGARMQEg~--------lSLMQ-MaktsaAl~~l~ea~lpyI 199 (294)
T COG0777 135 GGSMGSVVGEKITRAIERAIEDK-LPLVLFSAS-----GGARMQEGI--------LSLMQ-MAKTSAALKRLSEAGLPYI 199 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCEEEEecC-----cchhHhHHH--------HHHHH-HHHHHHHHHHHHhcCCceE
Confidence 46677777788999999887654 788888884 454443311 00111 2334456677888999999
Q ss_pred EEEcCccccc-ccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHHHHcCccce
Q 023017 135 AILNGVTMGG-GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 135 aav~G~a~Gg-G~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
+.+..+..|| -..+++..|+.||.++|.++|..-++ +-+...+= |--.--+++-.++.|+||.
T Consensus 200 sVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV---------------IEQTire~-LPegfQ~aEfLlehG~iD~ 263 (294)
T COG0777 200 SVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV---------------IEQTIREK-LPEGFQTAEFLLEHGMIDM 263 (294)
T ss_pred EEecCCCccchhHhHHhccCeeecCcccccccCcchh---------------hhhhhccc-CCcchhhHHHHHHcCCcee
Confidence 9999999988 45799999999999888877654331 11111111 1111234567789999999
Q ss_pred ecCCCChhHHHHHH
Q 023017 214 YSVSEKLPLIEEEL 227 (288)
Q Consensus 214 vv~~~~l~~~~~~~ 227 (288)
||++.++......+
T Consensus 264 iv~R~elr~tla~l 277 (294)
T COG0777 264 IVHRDELRTTLASL 277 (294)
T ss_pred eecHHHHHHHHHHH
Confidence 99998776655444
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00092 Score=58.88 Aligned_cols=91 Identities=12% Similarity=0.117 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHh
Q 023017 117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 195 (288)
Q Consensus 117 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l 195 (288)
+.+.+-+..+.+++.|+||.|=|---+||.--...+|.+.+-++++|+. +.|.++++.++...--.. |.+
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~~ka~eAAe--- 245 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDASKAKEAAE--- 245 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcChhhhHHHHH---
Confidence 3444555668899999999999988777765556679999999999983 677777665443322222 333
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
.-.++|++++++|+||.|+|.
T Consensus 246 -~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 246 -AMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred -HcCCCHHHHHhCCCcceeccC
Confidence 358999999999999999974
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.047 Score=52.91 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=94.4
Q ss_pred EEEcCCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPSAL-NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~~~-N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.=|+|... -.++++-.....+.+...+. .++-+|.|.-. ..|..|- ..+.....+...+++..
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~-------------~~E~~g~~~~ga~~~~a 362 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGP-------------EAERAGIIRAGARLLYA 362 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SH-------------HHHHTTHHHHHHHHHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccc-------------hhhhcchHHHHHHHHHH
Confidence 344555422 26999999999999998886 45778887753 2233331 12223345667788999
Q ss_pred HhcCCCcEEEEEcCccccccccccccc----CeEEEeCceEEecccccccccCCCchHHHHhhcc-------h--HHH--
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPG----TFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-------G--HLG-- 190 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~-------g--~~a-- 190 (288)
+..+..|+|..|-|.+.|||..-.... |+++|.+++.++ +.++-++...+.+.- | ..+
T Consensus 363 ~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~ 435 (493)
T PF01039_consen 363 LAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQR 435 (493)
T ss_dssp HHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred HHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHH
Confidence 999999999999999999887544444 788887777766 433333333332211 0 000
Q ss_pred -HHHHh-cCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 191 -EFLAL-TGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 191 -~~l~l-~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
..+-- .-+.-++-.+...|++|.++++.+........
T Consensus 436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~ 474 (493)
T PF01039_consen 436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAA 474 (493)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 01100 11225788899999999999998876544443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.2 Score=49.24 Aligned_cols=145 Identities=13% Similarity=0.069 Sum_probs=93.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-+++.+-.....+.++..++ -++-+|.|.-.++ |..|.+-+ .....+...+++..+.....|.|+
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E-------------~~G~~~~~a~l~~A~a~~~VP~is 444 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSE-------------ASGIAKAGAKMVMAVACAKVPKIT 444 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHH-------------HhhHHHHHHHHHHHHHhCCCCEEE
Confidence 45888888888888888875 4577777765433 44443222 223456677889999999999999
Q ss_pred EEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHHhhc-c------h------HH-H-HH-H-H
Q 023017 136 ILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-P------G------HL-G-EF-L-A 194 (288)
Q Consensus 136 av~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-~------g------~~-a-~~-l-~ 194 (288)
.|-|.|+|+|..-.. ..|++++.+++.+ |+.++-++...+.+. + | .. + ++ + -
T Consensus 445 vi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i-------~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (569)
T PLN02820 445 IIVGGSFGAGNYGMCGRAYSPNFLFMWPNARI-------GVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVE 517 (569)
T ss_pred EEECCcchHHHHHhcCcCCCCCEEEECCCCeE-------EecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHH
Confidence 999999998764443 5677777766554 555555555444431 1 0 00 0 00 0 1
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhH
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 222 (288)
..-+..++-.+...|+||.|+++.+-..
T Consensus 518 ~~~~~~~p~~aa~~~~vD~VIdP~dTR~ 545 (569)
T PLN02820 518 AYEREANPYYSTARLWDDGVIDPADTRR 545 (569)
T ss_pred HHHHhCCHHHHHHcCCcCcccCHHHHHH
Confidence 1122456677889999999999876544
|
|
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.077 Score=46.14 Aligned_cols=131 Identities=11% Similarity=0.017 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEc--CCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKG--SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g--~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.+|.++.+.+...|-.++.++.-|-+.+.- .|+...+|+ .++..+..++-||=
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtagl-------------------------AIYDtMq~ik~~V~ 154 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGL-------------------------AIYDTMQYIKPDVS 154 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhh-------------------------hHHHHHHhhCCCce
Confidence 488899999999998898777777666654 344443332 13334445555665
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHH---------------------
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL--------------------- 193 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l--------------------- 193 (288)
..+=|.|.+-|..|..+ .+++-++.+|..++=+.-+.|+..==..=+-.+|+|+
T Consensus 155 Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~ 229 (275)
T KOG0840|consen 155 TICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV 229 (275)
T ss_pred eeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 55667777766555443 3456677777776555322222110000000012222
Q ss_pred ----HhcCCCCCHHHHHHcCccceecCC
Q 023017 194 ----ALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 194 ----~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
+-.-+-++|+||++.||+|+|++.
T Consensus 230 i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 230 IEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 123345899999999999999863
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.13 Score=49.50 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=64.8
Q ss_pred EEEEEcC-CCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 023017 45 RMAILNR-PSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (288)
Q Consensus 45 ~~i~ln~-p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (288)
..+-.|. +.+.-++.+-....+.++.+.+.++.. -+|.|.- |+|+.+.+-.. .... + -.+..-.
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~-P~i~l~d-----sgGari~~~v~-----~l~g---~-g~iF~~~ 157 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGL-PVIGLND-----SGGARIQEGVP-----SLAG---Y-GRIFYRN 157 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCC-CEEEEEc-----ccccccccCcc-----cccc---c-hHHHHHH
Confidence 4444444 347788888888888999998887654 3444443 33444432110 0000 1 1111122
Q ss_pred HHHhcCCCcEEEEEcCcccccccccccccCeEEEeCce
Q 023017 124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161 (288)
Q Consensus 124 ~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a 161 (288)
.+++.. .|.|++|-|+|.|||..+...||++|+.++.
T Consensus 158 a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 158 ARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred HHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 334444 9999999999999999999999999999974
|
|
| >PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.19 Score=38.92 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=44.0
Q ss_pred HHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcCcHHHHHHhh--cCCCCCCCC
Q 023017 224 EEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLDTVEEIIDSL--DDVAPSYAY 288 (288)
Q Consensus 224 ~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~~~~~l--ekr~p~~~~ 288 (288)
+... +.+...+|.++..+.+.+++.....+.+.+.. ..+...++ .+|+.||+++-| +.+.|+..|
T Consensus 33 a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p 102 (118)
T PF13766_consen 33 AQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSP 102 (118)
T ss_dssp HHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCC
Confidence 3334 78889999999999999998877777666554 66666666 689999999997 336677644
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.92 E-value=3.4 Score=40.09 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=93.6
Q ss_pred cCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhc
Q 023017 50 NRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGT 128 (288)
Q Consensus 50 n~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 128 (288)
|.|. ..-+|+.+....-.+.++ +.+..++-.|.|.-. ..|..|-+-+. ...++...+++..+..
T Consensus 331 Nqp~~~~G~l~~~sa~KaArFI~-~cd~~~iPlv~L~d~-pGFm~G~~~E~-------------~giik~Gakl~~A~ae 395 (526)
T COG4799 331 NQPRHLGGVLDIDSADKAARFIR-LCDAFNIPLVFLVDT-PGFMPGTDQEY-------------GGIIKHGAKLLYAVAE 395 (526)
T ss_pred cCccccccccchHHHHHHHHHHH-hhhccCCCeEEEeCC-CCCCCChhHHh-------------ChHHHhhhHHHhhHhh
Confidence 5553 556799999988888884 444456777776543 55777755432 3345666789999999
Q ss_pred CCCcEEEEEcCcccccccccc----cccCeEEEeCceEEecccccccccCCCchHHHHhh-cchHH-H--H-H------H
Q 023017 129 HLKPHVAILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHL-G--E-F------L 193 (288)
Q Consensus 129 ~~kp~Iaav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-~~g~~-a--~-~------l 193 (288)
+.+|.|..|-|.++|||.... +.+|+.+|.+++.++ +.-+-|+...+.+ .+... . . + +
T Consensus 396 atVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~ia-------VMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~ 468 (526)
T COG4799 396 ATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIA-------VMGPEGAVSILYRKELAAAERPEEREALLRKQL 468 (526)
T ss_pred ccCCeEEEEecccccceeeeecCccCCCceeEecCcceee-------ecCHHHHHHHHHHHHhhcccCchhHHHHHHHHH
Confidence 999999999999999998543 446777666666555 4322333333332 11111 0 0 0 0
Q ss_pred --HhcCCCCCHHHHHHcCccceecCCCChh
Q 023017 194 --ALTGAKLNGAEMMACGLATHYSVSEKLP 221 (288)
Q Consensus 194 --~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 221 (288)
-+.-+-.++--|.+.|++|.|+++.+..
T Consensus 469 ~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR 498 (526)
T COG4799 469 IAEYEEQFSNPYYAAERGYIDAVIDPADTR 498 (526)
T ss_pred HHHHHHhccchHHHHHhCCCCcccCHHHHH
Confidence 0111223455667889999999876543
|
|
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.58 E-value=6.2 Score=37.40 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=98.9
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-|+|+ ..-.|..+.-....+.++... +..+-.|.|...++ |-.|.+.+..+ ..+....++..
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G-fm~g~~~e~~g-------------IaK~gAklv~a 417 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG-FMVGRAAEAGG-------------IAKHGAKLVYA 417 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC-ccccchhhhhc-------------hhhhhhhhhhh
Confidence 3335554 345677777777777777665 44577777777666 88887776532 22344567888
Q ss_pred HhcCCCcEEEEEcCcccccccc---cccccCeEEEeCceEEecccccccccCCCchHHHHhh-----cc--hHHHHHHHh
Q 023017 126 LGTHLKPHVAILNGVTMGGGAG---VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-----LP--GHLGEFLAL 195 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~---lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-----~~--g~~a~~l~l 195 (288)
......|-|..+.|.+.||-.. ..+.-|+.++.++|++++-..+ ++...+.+ .. +....+.+
T Consensus 418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~f- 489 (536)
T KOG0540|consen 418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEKF- 489 (536)
T ss_pred hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHHh-
Confidence 8899999999999999997654 4577899999988888754332 11112222 12 22233333
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHH
Q 023017 196 TGAKLNGAEMMACGLATHYSVSEKLPLIE 224 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~~ 224 (288)
|.++. |...||+|.|+++.+.....
T Consensus 490 -~npy~---a~~Rg~~D~II~p~~tR~vl 514 (536)
T KOG0540|consen 490 -GNPYY---AAARGWDDGIIDPSDTRKVL 514 (536)
T ss_pred -cCccH---HHHhhccccccChhHhhHHH
Confidence 66665 35789999999988765543
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=80.76 E-value=5.8 Score=37.53 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=44.5
Q ss_pred HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc----CcCcHHHHHHhh--cCCCCCCC
Q 023017 228 GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF----GLDTVEEIIDSL--DDVAPSYA 287 (288)
Q Consensus 228 ~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~----~~~~~e~~~~~l--ekr~p~~~ 287 (288)
+.+...+|.++..+.+.+++.....+.+.+.. ..+...++ ++|+.|||++-| +.+.|+..
T Consensus 304 ~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~~P~W~ 370 (407)
T PLN02851 304 KKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDFAPKWD 370 (407)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCCCCCCC
Confidence 67788899999999999887665666555443 55556654 689999999998 35677753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 288 | ||||
| 3bpt_A | 363 | Crystal Structure Of Human Beta-Hydroxyisobutyryl-C | 1e-46 | ||
| 4hdt_A | 353 | Crystal Structure Of A Carnitinyl-Coa Dehydratase F | 1e-29 | ||
| 4j2u_A | 365 | Crystal Structure Of An Enoyl-coa Hydratase From Rh | 1e-23 | ||
| 3ju1_A | 407 | Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F | 2e-23 | ||
| 2hw5_A | 286 | The Crystal Structure Of Human Enoyl-Coenzyme A (Co | 3e-16 | ||
| 1mj3_A | 260 | Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata | 2e-14 | ||
| 1ey3_A | 258 | Structure Of Enoyl-Coa Hydratase Complexed With The | 2e-14 | ||
| 1dub_A | 261 | 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph | 2e-14 | ||
| 3pzk_A | 257 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-14 | ||
| 3q0j_A | 258 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-14 | ||
| 2ej5_A | 257 | Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr | 3e-14 | ||
| 3h81_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 4e-14 | ||
| 3r0o_A | 273 | Crystal Structure Of Carnitinyl-Coa Hydratase From | 6e-14 | ||
| 3hrx_A | 254 | Crystal Structure Of Phenylacetic Acid Degradation | 8e-14 | ||
| 2pbp_A | 258 | Crystal Structure Of Enoyl-Coa Hydrates Subunit I ( | 2e-13 | ||
| 3moy_A | 263 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 8e-13 | ||
| 3rrv_A | 276 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 7e-12 | ||
| 3r9t_A | 267 | Structure Of Echa1_1 From Mycobacterium Paratubercu | 7e-12 | ||
| 3r9s_A | 267 | Structure Of A Carnitinyl-Coa Dehydratase From Myco | 9e-12 | ||
| 3qmj_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr | 1e-11 | ||
| 3p5m_A | 255 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 3e-11 | ||
| 2vsu_A | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 9e-11 | ||
| 2vsu_C | 275 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 9e-11 | ||
| 2j5i_A | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 9e-11 | ||
| 2vsu_E | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 9e-11 | ||
| 2vsu_F | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 1e-10 | ||
| 3rsi_A | 265 | The Structure Of A Putative Enoyl-Coa HydrataseISOM | 1e-10 | ||
| 2vss_E | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 1e-10 | ||
| 2j5i_I | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 1e-10 | ||
| 2j5i_B | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 1e-10 | ||
| 2vss_F | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 1e-10 | ||
| 4f47_A | 278 | The Structure Of Enoyl-Coa Hydratase Echa19 From My | 2e-09 | ||
| 4fzw_A | 258 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 3e-09 | ||
| 3tlf_A | 274 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 9e-09 | ||
| 1uiy_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase From Therm | 9e-09 | ||
| 3kqf_A | 265 | 1.8 Angstrom Resolution Crystal Structure Of Enoyl- | 1e-08 | ||
| 3p85_A | 270 | Crystal Structure Enoyl-Coa Hydratase From Mycobact | 2e-08 | ||
| 2f6q_A | 280 | The Crystal Structure Of Human Peroxisomal Delta3, | 2e-08 | ||
| 3qyr_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M | 2e-08 | ||
| 2vre_A | 296 | Crystal Structure Of Human Peroxisomal Delta3,5, De | 6e-08 | ||
| 3qxz_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 7e-08 | ||
| 4fzw_C | 274 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 2e-07 | ||
| 3pea_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 2e-07 | ||
| 3sll_A | 290 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-07 | ||
| 3pe8_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 6e-07 | ||
| 1dci_A | 275 | Dienoyl-Coa Isomerase Length = 275 | 8e-07 | ||
| 3qka_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase Echa5 From | 8e-07 | ||
| 3lke_A | 263 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 9e-07 | ||
| 3he2_A | 264 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 1e-06 | ||
| 1nzy_A | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 2e-06 | ||
| 2uzf_A | 273 | Crystal Structure Of Staphylococcus Aureus 1,4-Dihy | 2e-06 | ||
| 1nzy_B | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 2e-06 | ||
| 3myb_A | 286 | Crystal Structure Of Enoyl-Coa Hydratase Mycobacter | 2e-06 | ||
| 3oc7_A | 267 | Crystal Structure Of An Enoyl-Coa Hydratase From My | 4e-06 | ||
| 2iex_A | 272 | Crystal Structure Of Dihydroxynapthoic Acid Synthet | 4e-06 | ||
| 3fdu_A | 266 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 4e-06 | ||
| 1jxz_A | 269 | Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe | 4e-06 | ||
| 3trr_A | 256 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 1e-05 | ||
| 3hin_A | 275 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 3e-05 | ||
| 3ome_A | 282 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 4e-05 | ||
| 3t3w_A | 279 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 6e-05 | ||
| 3g64_A | 279 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 1e-04 | ||
| 2vx2_A | 287 | Crystal Structure Of Human Enoyl Coenzyme A Hydrata | 2e-04 | ||
| 3i47_A | 268 | Crystal Structure Of Putative Enoyl Coa HydrataseIS | 2e-04 | ||
| 3qxi_A | 265 | Crystal Structure Of Enoyl-Coa Hydratase Echa1 From | 2e-04 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 6e-04 |
| >pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363 | Back alignment and structure |
|
| >pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353 | Back alignment and structure |
|
| >pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365 | Back alignment and structure |
|
| >pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407 | Back alignment and structure |
|
| >pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286 | Back alignment and structure |
|
| >pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260 | Back alignment and structure |
|
| >pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258 | Back alignment and structure |
|
| >pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261 | Back alignment and structure |
|
| >pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257 | Back alignment and structure |
|
| >pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258 | Back alignment and structure |
|
| >pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257 | Back alignment and structure |
|
| >pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278 | Back alignment and structure |
|
| >pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273 | Back alignment and structure |
|
| >pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254 | Back alignment and structure |
|
| >pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258 | Back alignment and structure |
|
| >pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263 | Back alignment and structure |
|
| >pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276 | Back alignment and structure |
|
| >pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267 | Back alignment and structure |
|
| >pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267 | Back alignment and structure |
|
| >pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256 | Back alignment and structure |
|
| >pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255 | Back alignment and structure |
|
| >pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275 | Back alignment and structure |
|
| >pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 | Back alignment and structure |
|
| >pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278 | Back alignment and structure |
|
| >pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258 | Back alignment and structure |
|
| >pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274 | Back alignment and structure |
|
| >pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253 | Back alignment and structure |
|
| >pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265 | Back alignment and structure |
|
| >pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270 | Back alignment and structure |
|
| >pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280 | Back alignment and structure |
|
| >pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296 | Back alignment and structure |
|
| >pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274 | Back alignment and structure |
|
| >pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261 | Back alignment and structure |
|
| >pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290 | Back alignment and structure |
|
| >pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256 | Back alignment and structure |
|
| >pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275 | Back alignment and structure |
|
| >pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261 | Back alignment and structure |
|
| >pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263 | Back alignment and structure |
|
| >pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264 | Back alignment and structure |
|
| >pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273 | Back alignment and structure |
|
| >pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286 | Back alignment and structure |
|
| >pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267 | Back alignment and structure |
|
| >pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272 | Back alignment and structure |
|
| >pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266 | Back alignment and structure |
|
| >pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269 | Back alignment and structure |
|
| >pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256 | Back alignment and structure |
|
| >pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275 | Back alignment and structure |
|
| >pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282 | Back alignment and structure |
|
| >pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279 | Back alignment and structure |
|
| >pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279 | Back alignment and structure |
|
| >pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287 | Back alignment and structure |
|
| >pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268 | Back alignment and structure |
|
| >pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363 | Back alignment and structure |
|---|
Score = 318 bits (818), Expect = e-109
Identities = 103/255 (40%), Positives = 147/255 (57%), Gaps = 5/255 (1%)
Query: 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-R 89
D +VL+ K + + LNRP LNAL NM ++ K WE DP + +KG+G +
Sbjct: 3 DAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 90 AFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 149
AFCAGGDI + + + FFR Y +G+ KP+VA+++G+TMGGG G+S
Sbjct: 63 AFCAGGDIRVISEAEKAKQ-KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLS 121
Query: 150 IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACG 209
+ G FRVA K +FA PET IG PD G ++L L G LG FLALTG +L G ++ G
Sbjct: 122 VHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAG 181
Query: 210 LATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNS---VIHRIDIVDKC 266
+ATH+ SEKL ++EE+L L + I + LE Y D++ + +D ++ C
Sbjct: 182 IATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSC 241
Query: 267 FGLDTVEEIIDSLDD 281
F +TVEEII++L
Sbjct: 242 FSANTVEEIIENLQQ 256
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = e-102
Identities = 82/280 (29%), Positives = 131/280 (46%), Gaps = 13/280 (4%)
Query: 16 LRALSQHRTSSSVTDDLCNQVLVEGKANS-RMAILNRPSALNALNTNMGAKLNKLFKAWE 74
+ L S T ++ Q L + LN ALNAL+ +M + W+
Sbjct: 23 MTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWK 82
Query: 75 NDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK---LEECKDFFRTLYSFIYLLGTHL 130
DP I V + GSG +AFCAGGD+ +LYH K E K FF Y YLL T+
Sbjct: 83 KDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYG 142
Query: 131 KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG 190
KP + +G+ MGGG G+ + +V + A PE IG +PD G S++L+ +PG +G
Sbjct: 143 KPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGKMG 202
Query: 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDP-----SVIEACLEKY 245
FL LT +N A+ GLA HY + L+ + + L D ++ + +
Sbjct: 203 LFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINEL 262
Query: 246 SDLVYPDKNS--VIHRIDIVDKCFGLDTVEEIIDSLDDVA 283
S+ V K + +++D+ ++ +I+ + ++
Sbjct: 263 SNQVDIPKGDSVLAESQEMIDRLMA-GSLTDIVTRMSTLS 301
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-31
Identities = 60/168 (35%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP LNA M A++ K K DPN+ V + G+GRAFCAG D+ + M+ G
Sbjct: 18 LNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGD 77
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ + + ++ L KP VA +NG G G +++ FR+ K FA
Sbjct: 78 VLR--SRYAPMMKALHHLE---KPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFI 132
Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
+G PDAG +YL L G L LA+ G K+ E A GLAT
Sbjct: 133 HVGLVPDAGHLYYLPRLVGRAKALE--LAVLGEKVTAEEAAALGLATK 178
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-31
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
+ P NAL+ ++ E D ++G V + G+ AFCAG +
Sbjct: 18 IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLRE---IPLDKG 74
Query: 109 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
+ +D FR + + + + +P +A +NGV GGG G+S+ + F
Sbjct: 75 VAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFV 134
Query: 165 TPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLAT 212
IG D S+ L+ + G + L LT L E GL +
Sbjct: 135 CAWHTIGIGNDTATSYSLARIVGMRRAME--LMLTNRTLYPEEAKDWGLVS 183
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-30
Identities = 34/196 (17%), Positives = 57/196 (29%), Gaps = 13/196 (6%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L P LNAL L +L + + + ++ F ++ SGR F +G D +
Sbjct: 24 LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 83
Query: 109 LEECKD-------FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
+ + F H K + LNG +G A + +
Sbjct: 84 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 143
Query: 162 V-FATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSE 218
V P +G + G + L G E + M G +
Sbjct: 144 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYE-CLMFNKPFKYDIMCENGFISK--NFN 200
Query: 219 KLPLIEEELGKLVTDD 234
E V ++
Sbjct: 201 MPSSNAEAFNAKVLEE 216
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-30
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L+RP LNA++T M +L+ + E D ++ V + G+GRAFC+GGD+ G
Sbjct: 21 LDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTG---GDTAGA 77
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ R + S KP +A ++G +G G +++ VA + F T
Sbjct: 78 ADAANRVVRAITSL-------PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFT 130
Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
+G PD GAS L L G +A+T K++ A G+ +H
Sbjct: 131 RVGLMPDGGASALLPLLIGRARTSR--MAMTAEKISAATAFEWGMISH 176
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-30
Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 8/168 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP ALNA N + + +DP + V + GSGR F AG D+ +
Sbjct: 21 LNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAE---MQARIT 77
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ I L KP + +NG+ +G GA + P T
Sbjct: 78 DPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFT 137
Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
+G P+A +S+ L L G L ++ ++ E + GL
Sbjct: 138 SLGVAPEAASSYLLPQLVGRQNAAW--LLMSSEWIDAEEALRMGLVWR 183
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-30
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 6/169 (3%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA-FCAGGDIVSLYHFMNQG 107
L+ P N L+ +G L + +A N+ +I + ++ RA F +G + L +
Sbjct: 19 LDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQ 78
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
++ L + + T K VA++NG GGG + + R+A + F
Sbjct: 79 SDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENF 138
Query: 168 TLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
+G PD GAS++L + G+ + L L G E + GL
Sbjct: 139 HKMGISPDLGASYFLPRIIGYEQTMN--LLLEGKLFTSEEALRLGLIQE 185
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-30
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 4/167 (2%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
NRP NA+NT M ++ + KA D +I V + G+G + +G D+ + G
Sbjct: 41 FNRPKKKNAINTEMYHEIMRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGGV 99
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
E+ K+ L F+ KP +A++NG +G + A + F TP +
Sbjct: 100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFS 159
Query: 169 LIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATH 213
+G P+ +S+ + E + + G KL E A GL T
Sbjct: 160 HLGQSPEGCSSYTFPKIMSPAKATE-MLIFGKKLTAGEACAQGLVTE 205
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-29
Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 5/167 (2%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
+NRP A NAL + + K + + ++ V ++G+ F AG D+ FM +
Sbjct: 20 INRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKD---FMGFVQ 76
Query: 109 LEECKDFFRTLY-SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
+ + KP + + GV +G G + + A +F P
Sbjct: 77 NPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPF 136
Query: 168 TLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATH 213
+G P+ GAS L G+ L T K N + GL
Sbjct: 137 VSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNE 183
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-29
Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 20/171 (11%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
+ S+ N + ++ L F + V + G G F +G F+ +
Sbjct: 18 MKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASK----EFLIRKT 73
Query: 109 LEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
E + D + P +A + G + GGG + + F V ++V+AT
Sbjct: 74 RGEVEVLDLSGLILDC-------EIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATN 126
Query: 167 ETLIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACGLATH 213
GF P S L LG + TG G E+ G+
Sbjct: 127 FMKYGFTPVGATSLILREK---LGSELAQEMIYTGENYRGKELAERGIPFP 174
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-29
Identities = 48/169 (28%), Positives = 68/169 (40%), Gaps = 6/169 (3%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L RP LNAL A L L + + + G GR FC+GGD+ +
Sbjct: 32 LARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMD 91
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
DF R + + P +A L+GV G GA +++ FRVA T FA T
Sbjct: 92 TARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFT 151
Query: 169 LIGFHP-DAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
+G D GA++ L + G L + G + E GL +
Sbjct: 152 RVGLSGGDMGAAYLLPRVVGLGHATR--LLMLGDTVRAPEAERIGLISE 198
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-29
Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 7/182 (3%)
Query: 36 VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
++V+ K + I R + NALNT + ++ + D V +G FC
Sbjct: 25 IVVK-KEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCC 82
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
G D + + + T+ +F+ KP V +NG +G GA +
Sbjct: 83 GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 142
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLA 211
A K F TP T G PD +S + G E + + G KL E A GL
Sbjct: 143 LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANE-MLIAGRKLTAREACAKGLV 201
Query: 212 TH 213
+
Sbjct: 202 SQ 203
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-29
Identities = 40/183 (21%), Positives = 65/183 (35%), Gaps = 9/183 (4%)
Query: 36 VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
++V K + I + S N+LN + ++ D V + G FC
Sbjct: 7 IVVR-KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCC 64
Query: 94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
G D + + + E + +F+ KP + +NG +G GA +
Sbjct: 65 GLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD 124
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
A K F TP T G PD ++ + G + L+G KL E GL
Sbjct: 125 VVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANE--MLLSGRKLTAQEACGKGL 182
Query: 211 ATH 213
+
Sbjct: 183 VSQ 185
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 8e-29
Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 11/205 (5%)
Query: 20 SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
+Q + S+ D+ ++ V R+ LNRP +LN++N ++ L +L++ +DP
Sbjct: 14 AQTQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTA 73
Query: 80 GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILN 138
+ G+GRAF AGGD + + + I L P VA +N
Sbjct: 74 RAAVITGAGRAFSAGGDFG---YLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVN 130
Query: 139 GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLAL 195
G +G G + A P +G G AL
Sbjct: 131 GPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE--YAL 188
Query: 196 TGAKLNGAEMMACGLATHYSVSEKL 220
TG +++ + GLA H V++
Sbjct: 189 TGTRISAQRAVELGLANH--VADDP 211
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 8e-29
Identities = 48/186 (25%), Positives = 64/186 (34%), Gaps = 10/186 (5%)
Query: 36 VLVEGKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAG 94
VL E I NR LNA ++ A E DP I + + G GR FCAG
Sbjct: 31 VLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAG 90
Query: 95 GDIVSLYHFMNQGKL---EECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSI 150
+ S K + + + T L KP +A +NG +G G ++
Sbjct: 91 AYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQAL 150
Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMA 207
R A FA G + G S+ L L L L L+G E
Sbjct: 151 MCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALD--LLLSGRTFLAEEAAQ 208
Query: 208 CGLATH 213
GL
Sbjct: 209 LGLVKE 214
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-27
Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 8/168 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L+ P LN++ M L ++ + DP++ V ++G G+AF +GG + G
Sbjct: 29 LDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDE--TIGD 85
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
E R + L KP V+ + G +G G V++ VA T
Sbjct: 86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHT 145
Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
+G A+ L G LT L+G E GL +
Sbjct: 146 KLGVAAGDHAAICWPLLVGMAKAKY--YLLTCETLSGEEAERIGLVST 191
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-27
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 10/168 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L+ PS N+ +G +L ++ ++DP + + + G+ AFC+G I + +
Sbjct: 22 LHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPR 81
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ + + L P +A +NG +G G +++ R+ + +A P+
Sbjct: 82 NPD--FSASPVQPAAFELR---TPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQV 136
Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
G PDA A + L L G L LTGA + + GLA
Sbjct: 137 RFGVAPDALAHWTLPRLVGTAVAAE--LLLTGASFSAQRAVETGLANR 182
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-27
Identities = 34/181 (18%), Positives = 55/181 (30%), Gaps = 7/181 (3%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+ + I R LNA+ + L ++++ E + V ++G G F AGG
Sbjct: 12 LAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGG 71
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
+ + E F + +P VA + V +G G +++
Sbjct: 72 SFGLIEEM--RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIA 129
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLAT 212
V T +G A L G L L G E GL
Sbjct: 130 VVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKY--HLLLNEPLTGEEAERLGLVA 187
Query: 213 H 213
Sbjct: 188 L 188
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-26
Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 12/197 (6%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
+RP A N +N + + ++ E + V ++G FC G D +Y M +G
Sbjct: 22 FHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRG- 79
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ LY L T ++ + G GG G +A F+ E
Sbjct: 80 -RKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSEL 138
Query: 169 LIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACGLATHYSVSEKLPLIE 224
L G +P F L +G + L ++ E GL +E L+
Sbjct: 139 LFGLYPACVLPF----LIRRIGRQKAHYMTLMTKPISVQEASEWGLI-DAFDAESDVLLR 193
Query: 225 EELGKLVTDDPSVIEAC 241
+ L +L + I
Sbjct: 194 KHLLRLRRLNKKGIAHY 210
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-26
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 9/169 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSL--YHFMNQ 106
LNRP +NA+ ++ ++ +D ++ V + G+G+ FC+G D S +
Sbjct: 39 LNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGG 98
Query: 107 GKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
L + L + +P +A +NG +GGG +++ RVA F
Sbjct: 99 LTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRA 158
Query: 166 PETLIGFHP-DAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
G + G S+ L G + LTG ++ E GL
Sbjct: 159 AGINNGLTASELGLSYLLPRAIGTSRASD--IMLTGRDVDADEAERIGL 205
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-26
Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 12/183 (6%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
V E R+ L+ P+ N + + + D ++ V + G R+F AG
Sbjct: 2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAG 61
Query: 95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
GD + +EE D LY + + KP +A ++G +G G ++
Sbjct: 62 GDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVN---KPTIAAVDGYAIGMGFQFALMFDQ 118
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
R+ F PE G GA+ L G L+ + L
Sbjct: 119 RLMASTANFVMPELKHGIGCSVGAAI----LGFTHGFSTMQEIIYQCQSLDAPRCVDYRL 174
Query: 211 ATH 213
Sbjct: 175 VNQ 177
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+LV+ R LNRP + NAL+ + + + +ND ++ V + G+ FCAG
Sbjct: 11 LLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGL 70
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D+ + +L + + + KP + +NG + GG +++
Sbjct: 71 DLKE---LGDTTELPDISPKWPDMT----------KPVIGAINGAAVTGGLELALYCDIL 117
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
+A FA +G P G S L +G LA LTG L+ + + GL
Sbjct: 118 IASENAKFADTHARVGLMPTWGLSVRLPQK---VGVGLARRMSLTGDYLSAQDALRAGLV 174
Query: 212 TH 213
T
Sbjct: 175 TE 176
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-25
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 7/167 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
++ + +L F D V + G+G +FC D S N G
Sbjct: 31 VHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTS----FNLGT 86
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPE 167
+ + + L + P +A +NG + + + +A F P
Sbjct: 87 PHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGP-VTNAPEIPVMSDIVLAAESATFQDGPH 145
Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213
G P GA H+ G G + LTG +L+ + G
Sbjct: 146 FPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNE 192
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 10/169 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP+ NA + M +L +E D ++ + G G F AG D+ S+ + G
Sbjct: 24 LNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA 83
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ L KP + ++G + G +++ +A FA E
Sbjct: 84 SLTPEGGINPWQVDGRQLS---KPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEV 140
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
G +P GA+ P G A LT + E G+
Sbjct: 141 NRGIYPFGGATI---RFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQE 186
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 4e-25
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 9/194 (4%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
V VE + ILNRP NA++ + ++ + + E DP G + + G+G A+ AG
Sbjct: 11 VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
D+ + ++ G + R + + LL + KP +A++NG GGG +
Sbjct: 71 DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATH 213
+ + F E G P S ++ GH +TG G + GL
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGL--- 187
Query: 214 YSVSEKLPLIEEEL 227
V+E +PL +L
Sbjct: 188 --VNESVPL--AQL 197
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 6e-25
Identities = 27/167 (16%), Positives = 46/167 (27%), Gaps = 6/167 (3%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
++ + + F D + V + GSG A+ A D +
Sbjct: 39 MHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFP---SLGDVTN 95
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPE 167
E + + L P ++ +NG + + +A TVF P
Sbjct: 96 PREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHSE-YILTTDIILASENTVFQDMPH 154
Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213
G P G G G + T KL + +
Sbjct: 155 LNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHE 201
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 6e-25
Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 15/197 (7%)
Query: 20 SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
T + T + + + L RP NALN+ + +L + + D +
Sbjct: 7 HHMGTLEAQTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRK-AGDGSA 65
Query: 80 GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139
+ + G G AFCAG D+ + D L+ + P V +NG
Sbjct: 66 RAIVLTGQGTAFCAGADLSG----DAFA--ADYPDRLIELHKAMDASP---MPVVGAING 116
Query: 140 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALT 196
+G G +++ RV F P + G D + LS L GH + L+
Sbjct: 117 PAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA--MLLS 174
Query: 197 GAKLNGAEMMACGLATH 213
KL + G+A
Sbjct: 175 AEKLTAEIALHTGMANR 191
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-24
Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 9/169 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LN P N L+ M L + E DP + V + G G+AF AG D+ L + +
Sbjct: 14 LNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER-VTELG 72
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
EE +L + + T+ KP VA +NG + GGAG+++ V + E
Sbjct: 73 AEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEV 132
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
IGF A S L +GE A LTG + E A GL
Sbjct: 133 KIGFVA-ALVSVILVRA---VGEKAAKDLLLTGRLVEAREAKALGLVNR 177
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 2e-24
Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 9/167 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
++ +N L M LN+ A + D N+G + + G+ R F G D+ + G+
Sbjct: 20 MDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDL----KVLTSGE 73
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ D R + Y L ++ KP V G + GA + G RVA E
Sbjct: 74 AKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEV 133
Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
IG A L P + A G +A G
Sbjct: 134 AIGMTIPYAAMEVLKLRLTPSAYQQ-AAGLAKTFFGETALAAGFIDE 179
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 2e-24
Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 12/183 (6%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
V E + + + L+R NA ++ M A L +E + G F AG
Sbjct: 14 VTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGL 73
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
D++ + + ++ KP V + G G + +
Sbjct: 74 DLME----LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADI 129
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
VA T FA E L G P G++ P G A LTG + + E + L
Sbjct: 130 AVAARGTRFAHLEVLRGIPPLGGSTV---RFPRAAGWTDAMRYILTGDEFDADEALRMRL 186
Query: 211 ATH 213
T
Sbjct: 187 LTE 189
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 3e-24
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 15/183 (8%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+ + + L RP LNAL+ M A++ +A++ + + + + G GRAF AG
Sbjct: 7 IAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGA 66
Query: 96 DIVSLYHFMNQGKLEECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
DI M + + + + ++ P +A +NG+ +GGG +++
Sbjct: 67 DIQE----MAKDDPIRLEWLNQFADWDRLSIVK---TPMIAAVNGLALGGGFELALSCDL 119
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
VA F PE +G P AG + L+ L +G A TGA+++ E G+
Sbjct: 120 IVASSAAEFGFPEVNLGVMPGAGGTQRLTKL---IGPKRALEWLWTGARMSAKEAEQLGI 176
Query: 211 ATH 213
Sbjct: 177 VNR 179
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 5e-24
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 5/167 (2%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
+NR S NA + + ++ + ND N+ + +K +G+ F AG D+ + N +
Sbjct: 19 MNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTE 78
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
EE + L + +Y + KP +A++ G GGGAG++ +A F E
Sbjct: 79 -EENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEV 137
Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
+G P A S Y+ L ++ + + L H
Sbjct: 138 KLGLIP-AVISPYVVRAIGERAAKM-LFMSAEVFDATRAYSLNLVQH 182
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 6e-24
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 7/166 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI--VSLYHFMNQ 106
L R A + L+ M A L+ + D ++ + + G GR FCAG D+ + +
Sbjct: 22 LGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPD 80
Query: 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
D F + + L KP +A++ G+ G + A F P
Sbjct: 81 EGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLP 140
Query: 167 ETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
G A +S + + E +ALTGA + +A GL
Sbjct: 141 GVQNGGFCTTPAV-AVSRVIGRRAVTE-MALTGATYDADWALAAGL 184
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 8e-24
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 15/185 (8%)
Query: 36 VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
+ V+ + LNR N+L+ + +L + + N V + G+G +AFC
Sbjct: 10 ISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFC 68
Query: 93 AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
AG D+ E+ + + + + ++ +P +A +NG+ +GGG +S+
Sbjct: 69 AGADLKE----RAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLAC 124
Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 208
FR+A ET + P AG + L L +G A TG +++ E
Sbjct: 125 DFRIAAESASLGLTETTLAIIPGAGGTQRLPRL---IGVGRAKELIYTGRRISAQEAKEY 181
Query: 209 GLATH 213
GL
Sbjct: 182 GLVEF 186
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 9e-24
Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 16/187 (8%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP NA+N +L + F+ D + V + G+G+ F +G D++ + + Q
Sbjct: 19 LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78
Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
++ L I KP +A ++G +GGG + R
Sbjct: 79 GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLG---EFLALTGAKLNGAEMMACGLATHYSVSE 218
F E +G D G L + G+ E L T K+ E + GL VS
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNE-LTFTARKMMADEALDSGL-----VSR 192
Query: 219 KLPLIEE 225
P +
Sbjct: 193 VFPDKDV 199
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 1e-23
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 16/203 (7%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI--------VSL 100
LN P NAL+T + ++L++ + +DP + V + +G FCAG D+ S
Sbjct: 26 LNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSS 85
Query: 101 YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
+ M + E R + P +A ++G GG G+ VA +
Sbjct: 86 AYDMAVERAREMAALMRAIVES-------RLPVIAAIDGHVRAGGFGLVGACDIAVAGPR 138
Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
+ FA E IG P + L L LTG K + GL + +
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLI-TMAAEDLD 197
Query: 221 PLIEEELGKLVTDDPSVIEACLE 243
I++ + + P + A
Sbjct: 198 AAIDQLVTDVGRGSPQGLAASKA 220
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-23
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 14/203 (6%)
Query: 18 ALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP 77
+++ + + + + LVE + ++ + +NRPS NAL+ M + + + +NDP
Sbjct: 4 SMAPNTSETPANGESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDP 63
Query: 78 NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTHL-KPHV 134
+I + G+G FCAG D+ + + + + L G L KP +
Sbjct: 64 DIRCCILTGAGGYFCAGMDLKA----ATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLI 119
Query: 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194
A + G + GG + RVA F E +P G++ L + +A
Sbjct: 120 AAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAV---RLVRQIPYTVA 176
Query: 195 ----LTGAKLNGAEMMACGLATH 213
LTG + AE GL H
Sbjct: 177 CDLLLTGRHITAAEAKEMGLVGH 199
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-23
Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 17/193 (8%)
Query: 27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
S+++++ V VE ILNRP A NA++ A L F ++ DP + G
Sbjct: 4 SMSEEMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWG 63
Query: 87 SGRAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
FCAG D+ M + E S + L KP +A ++G + G
Sbjct: 64 DNGTFCAGADL----KAMGTDRGNELHPHGPGPMGPSRLRL----SKPVIAAISGHAVAG 115
Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKL 200
G +++ RV V G G + LP +G A LTG +
Sbjct: 116 GIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTI---RLPRLIGHSRAMDLILTGRPV 172
Query: 201 NGAEMMACGLATH 213
+ E + GL
Sbjct: 173 HANEALDIGLVNR 185
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-23
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+LVE + LNRP ALNALN+ + ++ ++DP+IG + + GS +AF AG
Sbjct: 27 ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 86
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
DI + + F + + + P +A + G +GGG +++
Sbjct: 87 DIKE---MADLTFADAFTADFFATWGKLAAVR---TPTIAAVAGYALGGGCELAMMCDVL 140
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
+A F PE +G P G S L+ +G+ A LTG ++ AE GL
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGSQRLTRA---IGKAKAMDLILTGRTMDAAEAERSGLV 197
Query: 212 TH 213
+
Sbjct: 198 SR 199
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-23
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 7/165 (4%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
LNRP A NAL+ M A L + F D ++ V + SG+AFCAG D+ + +
Sbjct: 40 TLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEM---RAEP 96
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
E + F + + P +A ++G+ G + VA FA
Sbjct: 97 SREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSG 156
Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
+G LS E + +TG ++ + GL
Sbjct: 157 INVGLFCSTPGV-ALSRNVGRKAAFE-MLVTGEFVSADDAKGLGL 199
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 6e-23
Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 18/183 (9%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
VLVE + + +NRP A N++N + L + D + + G+G +FCAG
Sbjct: 17 VLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGM 76
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
D+ + +G + + KP +A + G + GG +++
Sbjct: 77 DLKA----FARG------ENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDL 126
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
VA + F PE G G LP + +A LTG L+ A G+
Sbjct: 127 IVAARDSAFGIPEVKRGLVAGGGGLL---RLPERIPYAIAMELALTGDNLSAERAHALGM 183
Query: 211 ATH 213
Sbjct: 184 VNV 186
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 7e-23
Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 18/193 (9%)
Query: 36 VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR---- 89
+ + NRP NA + +L ++ P++G V + G+G
Sbjct: 57 ITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKD 116
Query: 90 ---AFCAGGDI---VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL----KPHVAILNG 139
AFC+GGD + G + D R I + + K + ++NG
Sbjct: 117 GGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNG 176
Query: 140 VTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTG 197
GGG + + +A + F + +G S YL+ G + G
Sbjct: 177 WAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 236
Query: 198 AKLNGAEMMACGL 210
+M G
Sbjct: 237 RTYTAEQMHQMGA 249
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 7e-23
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
+NR N+L+ N+ L+K A ++D + + ++ FCAG D+ +
Sbjct: 27 INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADL----KERAKM 82
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
E F + + I + P +A ++G+ +GGG +++ RVA E
Sbjct: 83 SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVE 142
Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
T + P G + L +G LA + L+G E A GL +H
Sbjct: 143 TKLAIIPGGGGTQRLPRA---IGMSLAKELIFSARVLDGKEAKAVGLISH 189
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 8e-23
Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 12/198 (6%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L+RP NAL+ + L A + + + G+GR F AG D
Sbjct: 22 LSRPEKRNALSAELVEALIDGVDAAHRE-QVPLLVFAGAGRNFSAGFDF----TDYETQS 76
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ + + + +A+ +G G G + +R + F P
Sbjct: 77 EGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGL 136
Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH-YSVSEKLPLIEE 225
G + + + + + E G + ++ LI+
Sbjct: 137 KFGLVL---GTRRFRDIVGADQALS-ILGSARAFDADEARRIGFVRDCAAQAQWPALIDA 192
Query: 226 ELGKLVTDDPSVIEACLE 243
DP+
Sbjct: 193 AAEAATALDPATRATLHR 210
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-22
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP ALNAL + +LN+ + +E DP +G + + G +AF AG DI N+
Sbjct: 22 LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKE---MQNRTF 78
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ F + + I + KP +A +NG +GGG +++ A K F PE
Sbjct: 79 QDCYSGKFLSHWDHITRIK---KPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI 135
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
L+G P AG + L+ +G+ LA LTG +++ + GL +
Sbjct: 136 LLGTIPGAGGTQRLTRA---VGKSLAMEMVLTGDRISAQDAKQAGLVSK 181
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-22
Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 12/183 (6%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+LVE + +NRP NAL+TNM ++ + ++D I + G+G A+C GG
Sbjct: 11 LLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGG 70
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
D+ + LL L KP +A +NG +GGG +
Sbjct: 71 DLSD----GWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDI 126
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
RV+ F PE G P AG+ L + A LTG L E GL
Sbjct: 127 RVSDEHATFGLPEVQRGLVPGAGSMVRLKRQ---IPYTKAMEMILTGEPLTAFEAYHFGL 183
Query: 211 ATH 213
H
Sbjct: 184 VGH 186
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 2e-22
Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 32/193 (16%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG- 107
NRP NA+ + +L+ L + + DP++ + + G G FCAG D+ + +
Sbjct: 50 FNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAG 109
Query: 108 -------------------------KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
L KP V ++G +
Sbjct: 110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCV 169
Query: 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKL 200
GG +++ +A P + P AG +H L TG +
Sbjct: 170 AGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKR-LLFTGDCI 225
Query: 201 NGAEMMACGLATH 213
GA+ GLA
Sbjct: 226 TGAQAAEWGLAVE 238
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 4e-22
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 18/185 (9%)
Query: 36 VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
+ + + L+RP ALNALN + A++ + ++ D IG + + GS RAF A
Sbjct: 11 IATSRPVA-GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAA 69
Query: 94 GGDIVSLYHFMNQGKLEECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
G DI M + ++ + + + + KP VA + G +GGG +++
Sbjct: 70 GADIAE----MVTLTPHQARERNLLSGWDSLTQVR---KPIVAAVAGYALGGGCELAMLC 122
Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 208
+A F PE +G P G + L+ +G+ A LTG L E
Sbjct: 123 DLVIAADTARFGQPEITLGILPGLGGTQRLTRA---VGKAKAMDLCLTGRSLTAEEAERV 179
Query: 209 GLATH 213
GL +
Sbjct: 180 GLVSR 184
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 1e-21
Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 19/183 (10%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
VL+E + + +NRP A NA+N + L ++ ++ + G+G FCAG
Sbjct: 9 VLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGM 68
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
D+ + G+ + KP +A + G + GG + +
Sbjct: 69 DLKA----FVSGEAVLS-------ERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDL 117
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
VA F PE G AG LP + +A LTG + G
Sbjct: 118 VVAGRSAKFGIPEVKRGLVAGAGGLL---RLPNRIPYQVAMELALTGESFTAEDAAKYGF 174
Query: 211 ATH 213
Sbjct: 175 INR 177
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-21
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 18/174 (10%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP A NA N + +L+ + D ++ + ++ +G+ F AG D+
Sbjct: 35 LNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRG----GGPVP 90
Query: 109 LEECKDFFRTLYSFIYLLGTHL-----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
+ +F S YL + KP +A + G + GG + P +A +F
Sbjct: 91 DKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALF 150
Query: 164 ATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
+ P L+ + LG A TG + E+ G+
Sbjct: 151 SDPVVLMDI--GGVEYHGHTWE---LGPRKAKEILFTGRAMTAEEVAQTGMVNR 199
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 1e-21
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 11/182 (6%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+ V + + +A LN A NA+++ + + +L E D NI V + G GR F AG
Sbjct: 8 LSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGA 66
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
DI + E + + + KP +A ++G +GGG ++ R
Sbjct: 67 DIKEFTSVTEAKQATELAQLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAMSCHMR 123
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
A PE +G P + L +G+ A LT + GAE + GL
Sbjct: 124 FATESAKLGLPELTLGLIPGFAGTQRLPRY---VGKAKACEMMLTSTPITGAEALKWGLV 180
Query: 212 TH 213
Sbjct: 181 NG 182
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-21
Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 21/178 (11%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP ALNAL+ +M +L + END + + + G+GRAFC+G D+ + +
Sbjct: 26 LNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKE----IPEDG 81
Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
+ + + Y KP + +NG+ G G +A +
Sbjct: 82 KVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQA 141
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAK--LNGAEMMACGLATH 213
F P IG + L +A L G ++ GL +
Sbjct: 142 TFFDPHVSIGLVAGRELVR----VSRVLPRSIALRMALMGKHERMSAQRAYELGLISE 195
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 3e-21
Identities = 45/169 (26%), Positives = 64/169 (37%), Gaps = 13/169 (7%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP NALN + A L + I V + G G F AG D+ + +
Sbjct: 31 LNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIGDHFSAGLDLSE----LRERD 84
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
E +T + + P +A L G +GGG ++ RVA +A PE
Sbjct: 85 ATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEG 144
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
G G S L L +G LTG + AE + G + +
Sbjct: 145 SRGIFVGGGGSVRLPRL---IGVARMADMMLTGRVYSAAEGVVHGFSQY 190
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 7e-21
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
L E + N + +NRP A NA+N + + + ++DP + V + G+G ++FCAG
Sbjct: 11 ALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAG 70
Query: 95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGT 153
D+ + + + + D + F + + KP +A +NG +GGG +++
Sbjct: 71 ADLKA----IARRENLYHPDHPE--WGFAGYVRHFIDKPTIAAVNGTALGGGTELALASD 124
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACG 209
VA + F PE G AG F + L +A LTG L+ A G
Sbjct: 125 LVVADERAQFGLPEVKRGLIAAAGGVFR---IAEQLPRKVAMRLLLTGEPLSAAAARDWG 181
Query: 210 LATH 213
L
Sbjct: 182 LINE 185
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-20
Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 11/189 (5%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
R +L+ P N L+ M L + ++ + + G F +G
Sbjct: 35 TSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGH 94
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D+ L + + + F+T + + H P +A++NG+ G +
Sbjct: 95 DLKEL---TEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIA 151
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
VA K+ FATP +G L + +A TG ++ E + GL
Sbjct: 152 VASDKSSFATPGVNVGLFCSTPG----VALARAVPRKVALEMLFTGEPISAQEALLHGLL 207
Query: 212 THYSVSEKL 220
+ +L
Sbjct: 208 SKVVPEAEL 216
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 11/170 (6%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
+NRP NA A++ F +D N+ + + G G AFC+GGD H G
Sbjct: 28 INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG 87
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
+ + + L I ++ KP +A++ G +GGG +++ +A +F
Sbjct: 88 EDQIPRLNVLDLQRLIRIIP---KPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTG 144
Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
+G S YL+ + +G A + N E + GL
Sbjct: 145 PKVGSFDAGYGSGYLARI---VGHKKAREIWYLCRQYNAQEALDMGLVNT 191
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 4e-20
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 12/182 (6%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
V V +++RP NA+ + ++ +IG V + G F AG
Sbjct: 26 VSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGD 84
Query: 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
D+ + E R I + KP VA + G +G G +++ +R
Sbjct: 85 DMPE----LRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWR 140
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
V+ F E L G P G L+ + +G A +G + E +A GL
Sbjct: 141 VSGDNVKFGATEILAGLIPGGGGMGRLTRV---VGSSRAKELVFSGRFFDAEEALALGLI 197
Query: 212 TH 213
Sbjct: 198 DD 199
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 1e-19
Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 19/186 (10%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG--RAFCA 93
V V + N LNAL+ L + I + ++ + F A
Sbjct: 6 VNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSA 64
Query: 94 GGDIVSLYHFMNQGKLEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
G DI H + G + D R + I KP ++++ G GG + +
Sbjct: 65 GHDI----HELPSGGRDPLSYDDPLRQITRMIQKFP---KPIISMVEGSVWGGAFEMIMS 117
Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMA 207
+A + F+ +G + L+ G + T + + +A
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRD---AGFHIVKELIFTASPITAQRALA 174
Query: 208 CGLATH 213
G+ H
Sbjct: 175 VGILNH 180
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-19
Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 17/188 (9%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
+ V + IL+ P +N + M +L + +D ++ + + F A
Sbjct: 11 LRVSSEHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAH 69
Query: 95 GDIVSL----YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSI 150
D+ + F+ + I + + L G GGGA
Sbjct: 70 VDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQP---QVTIVKLAGKARGGGAEFVA 126
Query: 151 PGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEM 205
A E L+G P G + YL +G A LT +
Sbjct: 127 AADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR---VGRNRALEVVLTADLFDAETA 183
Query: 206 MACGLATH 213
+ G
Sbjct: 184 ASYGWINR 191
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 2e-19
Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 29/203 (14%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-------- 87
V +E + + R LNA + + DP + ++G
Sbjct: 169 VHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYR 228
Query: 88 -GRAFCAGGDI-------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-----KPHV 134
R F AG ++ +SL F+ + +L R + + G KP V
Sbjct: 229 GKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWV 288
Query: 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194
A ++G +GGGA + + +A F+ P G P A L G ++
Sbjct: 289 AAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLR----LGRFAGPRVS 344
Query: 195 ----LTGAKLNGAEMMACGLATH 213
L G ++ E A L
Sbjct: 345 RQVILEGRRIWAKEPEARLLVDE 367
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 5e-19
Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 19/219 (8%)
Query: 11 RYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALN----ALNTNMGAKL 66
+ D ++S + +++ E + + ++ A+N +T + +
Sbjct: 9 HHSQDPNSMSAVQPFIRTNIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDI 68
Query: 67 NKLFKA-----WENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS 121
V + F GGD+ + +G D+ +
Sbjct: 69 TGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVR 128
Query: 122 FIYLLGTHL---KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA 178
++ L +A++ G +GGG ++ +A + PE L P GA
Sbjct: 129 GVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGA 188
Query: 179 SFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
S + + LA L G + +++ GL
Sbjct: 189 Y---SFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDR 224
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 7e-19
Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 12/165 (7%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LN +NA++ ++ N E D I V + G G D+ M
Sbjct: 21 LNNG-KVNAISPDVIIAFNAALDQAEKDRAI--VIVTGQPGILSGGYDL----KVM-TSS 72
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPE 167
E + + + +H P + G + GA + + +R+ G E
Sbjct: 73 AEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNE 132
Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
IG + + MA G
Sbjct: 133 VQIGMTMHHAGIELARDRLRKSAFNR-SVINAEMFDPEGAMAAGF 176
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-18
Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 11/184 (5%)
Query: 36 VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
VLVE A + +A+ P +N+L+ +L + END + V + F
Sbjct: 5 VLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63
Query: 93 AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
AG D+ M +++ + L V+ +NG GG V++
Sbjct: 64 AGLDLT----EMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTC 119
Query: 153 TFRVACGKTVFAT--PETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACG 209
+R+ + ET +G L + GH E G AE + G
Sbjct: 120 DYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVG 179
Query: 210 LATH 213
+
Sbjct: 180 IVDQ 183
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 3e-18
Identities = 37/187 (19%), Positives = 55/187 (29%), Gaps = 17/187 (9%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
+ A N P +N + + L L + + V + F
Sbjct: 10 IKARLDGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPH 68
Query: 95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYL---LGTHLKPHVAILNGVTMGGGAGVSIP 151
D+ + + E K S L L +A L G G G+ +
Sbjct: 69 VDMT----KVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLA 124
Query: 152 GTFRVA-CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMM 206
R A + PE IG P AGA +L+ L LG A LT + +
Sbjct: 125 CDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL---LGRGRALEAVLTSSDFDADLAE 181
Query: 207 ACGLATH 213
G
Sbjct: 182 RYGWVNR 188
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 4e-18
Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 16/172 (9%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG------RAFCAGGDIVSLYH 102
+NRP NA +L F D IG V + G+G AFC+GGD
Sbjct: 25 INRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSV--- 81
Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 162
G +++ + L+ + K +A++ G +GGG + + +A +
Sbjct: 82 RGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAI 141
Query: 163 FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
F +G S YL+ + +G+ A + + E G+
Sbjct: 142 FGQTGPKVGSFDGGFGSSYLARI---VGQKKAREIWYLCRQYSAQEAERMGM 190
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-17
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 29/193 (15%)
Query: 36 VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
+ E K+ +A +NRP NA ++ + D NIG + + G+G +AFC
Sbjct: 29 IRYE-KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFC 87
Query: 93 AGGDI--------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
+GGD ++ + + + RT KP VA++ G ++GG
Sbjct: 88 SGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCP----------KPVVAMVAGYSIGG 137
Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKL 200
G + + +A +F +G + Y++ + +G+ A +
Sbjct: 138 GHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARI---VGQKKAREIWFLCRQY 194
Query: 201 NGAEMMACGLATH 213
+ + + GL
Sbjct: 195 DAKQALDMGLVNT 207
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 1e-17
Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 14/184 (7%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
+ V + L+ + N+ + + N DP+I V + + F AG
Sbjct: 11 LTVFKEDGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAG 69
Query: 95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
DI +F+ F + + + ++A L G T+GGG +++
Sbjct: 70 ADI----NFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDL 125
Query: 155 RVACGKTV-FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACG 209
R + PE +G G + L+ L +G A +TG + E + G
Sbjct: 126 RFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL---IGYSRALDMNITGETITPQEALEIG 182
Query: 210 LATH 213
L
Sbjct: 183 LVNR 186
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 4e-15
Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 11/215 (5%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWEND-PNIGFVSMKGSG-RAFCAGGDIVSLYHFMN 105
LN+ + + +L+ + + P + V + R FC+G +I L +
Sbjct: 45 RDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTH 104
Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVF 163
K+ CK T +A +NG GGG +++ +
Sbjct: 105 AWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSV 164
Query: 164 ATPE-TLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATH-YSVS 217
+ PE L+G P G ++ F + G A L +
Sbjct: 165 SLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFC-TVVEGVRGERAKAWRLVDEVVKPN 223
Query: 218 EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD 252
+ I+ +L A + + D
Sbjct: 224 QFDQAIQARALELAAQSDRPAHAQGVPLTRIERTD 258
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 9/166 (5%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L P N+L+ ++ L ++ + ++ + + G+ F G DI M +G
Sbjct: 23 LINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGE-MQKGN 80
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
++E K + ++ LL KP VA ++G+ +GGG +++ R++ PE
Sbjct: 81 VKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPEL 140
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLAL----TGAKLNGAEMMACGL 210
+G P G + L L +G AL T + E + GL
Sbjct: 141 QLGVIPGFGGTQRLPRL---VGLTKALEMILTSKPVKAEEGHSLGL 183
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 26/206 (12%)
Query: 9 ISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNK 68
+ + L + + L + + + L P NA++ + ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMAEYLRLPHSLAM--------IRLCNPPV-NAVSPTVIREVRN 54
Query: 69 LFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGT 128
+ +D + + + G+ FCAG DI F +
Sbjct: 55 GLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG---LALGSLVDE-------IQR 104
Query: 129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188
+ KP +A + GV +GGG +++ +R+A K PE +G P A + L +
Sbjct: 105 YQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRV--- 161
Query: 189 LGEFLAL----TGAKLNGAEMMACGL 210
+G +AL +G L+ E + G+
Sbjct: 162 VGVPVALDLITSGKYLSADEALRLGI 187
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 8/159 (5%)
Query: 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115
N N +L + A + D ++ V + F G DI E
Sbjct: 30 NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAEL-IAG 88
Query: 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD 175
P VA +NG+ +GGG + + FRV PE +G +P
Sbjct: 89 NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPG 148
Query: 176 AGASFYLSHLPGHLGEFLAL----TGAKLNGAEMMACGL 210
G + L L +G A+ +G + + +
Sbjct: 149 FGGTVRLPRL---IGVDNAVEWIASGKENRAEDALKVSA 184
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-07
Identities = 59/356 (16%), Positives = 90/356 (25%), Gaps = 116/356 (32%)
Query: 1 MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNT 60
M +K + Q D L N V K N ++R L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQVFAKYN-----VSRLQPYLKLRQ 142
Query: 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGR-----AFCAGGDIVSLYHF----MNQGKLEE 111
L +L N+ + GSG+ C + F +N
Sbjct: 143 ----ALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 112 CKDFFRTLYSFIYLLGTHL---------------------------KPHVA---ILNGVT 141
+ L +Y + + KP+ +L V
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV- 253
Query: 142 MGGGAGVSIPGTFRVACGKTVFAT-------------------PETLIGFHPDAGASF-- 180
F ++C K + T + PD S
Sbjct: 254 ----QNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 181 -YLSHLPGHLGEFLALTGAKLNG---AEMMACGLAT-----HYSVSEKLPLIEEELGKLV 231
YL P L LT AE + GLAT H + + +IE L L
Sbjct: 309 KYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL- 366
Query: 232 TDDPSVIEACLEKYSDL-VYPDKNSVIHRIDIVDKCFGL-------DTVEEIIDSL 279
+P+ + L V+P S I L V +++ L
Sbjct: 367 --EPAEYRKM---FDRLSVFPP--SA----HIPTILLSLIWFDVIKSDVMVVVNKL 411
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 5e-04
Identities = 37/295 (12%), Positives = 83/295 (28%), Gaps = 79/295 (26%)
Query: 24 TSSSVTDDLCNQVLVEGKANSRM-----AILNRPSALNALNTNMGAKLNK----LFKAWE 74
S ++ + + +++ A S +L++ + + L L +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIK 99
Query: 75 ---NDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131
P++ + + Y+ + + + L L+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLE--------LR 148
Query: 132 PHVAI-LNGVTMGGGAGVSIPGTFRVACGKTVFATPETL----IGFHPDAGASFYLS--- 183
P + ++G + G GKT A + + D F+L+
Sbjct: 149 PAKNVLIDG--VLG-------------SGKTWVAL-DVCLSYKVQCKMDFKI-FWLNLKN 191
Query: 184 -HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPL--IEEELGK----------- 229
+ P + E L +++ + H S + KL + I+ EL +
Sbjct: 192 CNSPETVLEMLQKLLYQIDP---NWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 230 LVTDD---PSVIEA----C----LEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
LV + A C ++ + + I + L E
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.86 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.84 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.82 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.65 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.65 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.61 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.59 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.15 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 98.98 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 98.86 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 98.85 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 98.81 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 98.72 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 98.72 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.34 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 98.25 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.21 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.13 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 98.1 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 98.03 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.9 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.89 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.84 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 97.71 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.65 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.62 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.28 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.26 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.0 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 96.99 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 96.96 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 96.84 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 96.61 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 96.13 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 95.97 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 95.66 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 95.2 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 91.69 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 89.18 |
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=424.38 Aligned_cols=256 Identities=23% Similarity=0.300 Sum_probs=223.8
Q ss_pred CCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 31 ~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.|+++|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.........+
T Consensus 12 sM~e~il~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~ 91 (274)
T 4fzw_C 12 SMMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPD 91 (274)
T ss_dssp ----CEEEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCC
T ss_pred cccccEEEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchH
Confidence 36779999999999999999999999999999999999999999999999999999999999999999875432222333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+.+.++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 171 (274)
T 4fzw_C 92 LGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRAR 171 (274)
T ss_dssp HHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHH
Confidence 4445556677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~ 267 (288)
|++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++...+. ...+..++
T Consensus 172 A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~ 251 (274)
T 4fzw_C 172 AMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAG 251 (274)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888888 89999999999999999998877666655443 56666777
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
++|..|++.+|+|||+|+|
T Consensus 252 ~s~d~~Egv~AF~eKR~P~f 271 (274)
T 4fzw_C 252 RSADYREGVSAFLAKRSPQF 271 (274)
T ss_dssp TSHHHHHHHHHHHC-CCCCC
T ss_pred cCHHHHHHHHHHhCCCCCCC
Confidence 6899999999999999998
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-60 Score=417.97 Aligned_cols=247 Identities=25% Similarity=0.313 Sum_probs=225.8
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.+|++|+|++||||||+++|++|.+|+.+|.++++.+++|+++|+|||||.|+.||+|.|++++... ......+
T Consensus 2 vl~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-----~~~~~~~ 76 (254)
T 3hrx_A 2 VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDR-----KPDYEAH 76 (254)
T ss_dssp EEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTS-----CCCHHHH
T ss_pred eEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhccc-----chhhHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999987532 2223445
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
.+.+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |++|+
T Consensus 77 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll 156 (254)
T 3hrx_A 77 LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL 156 (254)
T ss_dssp THHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcCc
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLDT 271 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~ 271 (288)
+||++++|+||+++||||+++|++++.+.+..+ ++++..+|.++..+|+.+++......+..... ...+..++ ++|.
T Consensus 157 ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~ 236 (254)
T 3hrx_A 157 LLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDH 236 (254)
T ss_dssp HHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHH
T ss_pred hcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999888777 89999999999999999998877666655443 55666777 7899
Q ss_pred HHHHHHhhcCCCCCCC
Q 023017 272 VEEIIDSLDDVAPSYA 287 (288)
Q Consensus 272 ~e~~~~~lekr~p~~~ 287 (288)
.|++.+|+|||+|+|.
T Consensus 237 ~Eg~~AF~eKR~P~f~ 252 (254)
T 3hrx_A 237 EEGVRAFREKRPPRFQ 252 (254)
T ss_dssp HHHHHHHHTTSCCCCC
T ss_pred HHHHHHHhCCCCCCCC
Confidence 9999999999999983
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-60 Score=415.28 Aligned_cols=247 Identities=22% Similarity=0.289 Sum_probs=224.5
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
.|.++++|+|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++... .....
T Consensus 6 ~l~ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~------~~~~~ 79 (258)
T 4fzw_A 6 ELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK------DLAAT 79 (258)
T ss_dssp EEEEEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTC------CHHHH
T ss_pred cEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccc------hhhhH
Confidence 588999999999999999999999999999999999999999999999999999999999999987531 12223
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++|
T Consensus 80 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l 159 (258)
T 4fzw_A 80 LNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKM 159 (258)
T ss_dssp HTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred HHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHH
Confidence 334456788899999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~ 270 (288)
+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++.....++..+.. .+.+..++ ++|
T Consensus 160 lltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d 239 (258)
T 4fzw_A 160 VLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAATED 239 (258)
T ss_dssp HHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHH
T ss_pred HHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999888887 89999999999999999998877666655543 56677777 689
Q ss_pred cHHHHHHhhcCCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~~ 287 (288)
..|++.+|+|||+|+|.
T Consensus 240 ~~Eg~~AF~eKR~P~f~ 256 (258)
T 4fzw_A 240 RHEGISAFLQKRTPDFK 256 (258)
T ss_dssp HHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHhCCCCCCCC
Confidence 99999999999999983
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=405.27 Aligned_cols=257 Identities=22% Similarity=0.255 Sum_probs=232.4
Q ss_pred CCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 31 ~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
..++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++..........
T Consensus 14 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 93 (279)
T 3g64_A 14 PEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTA 93 (279)
T ss_dssp SCCSSEEEEEETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHH
T ss_pred CCCCeEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999987643333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEeccccccccc-CCCchHHHHhhcchHH
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH-PDAGASFYLSHLPGHL 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~-p~~g~~~~l~~~~g~~ 189 (288)
....+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|++++|..
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~ 173 (279)
T 3g64_A 94 RLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG 173 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence 344566667889999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHH
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKC 266 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~ 266 (288)
|++|+++|+.++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++...+. ...+..+
T Consensus 174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~ 253 (279)
T 3g64_A 174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHAQTKALLTAELDMPLAAAVELDASTQALL 253 (279)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888 89999999999999999998776666555443 5666777
Q ss_pred c-CcCcHHHHHHhhcCCCCCCC
Q 023017 267 F-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 267 ~-~~~~~e~~~~~lekr~p~~~ 287 (288)
+ ++|..|++.+|+|||+|+|.
T Consensus 254 ~~s~d~~eg~~af~ekr~p~f~ 275 (279)
T 3g64_A 254 MTGEDYAEFHAAFTEKRPPKWQ 275 (279)
T ss_dssp TTSHHHHHHHHHHHTTSCCCCC
T ss_pred hcCHHHHHHHHHHhcCCCCCCC
Confidence 7 68999999999999999983
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=401.94 Aligned_cols=253 Identities=22% Similarity=0.311 Sum_probs=226.6
Q ss_pred CCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 31 ~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+|+++|.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++... ....
T Consensus 3 ~m~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~ 78 (261)
T 3pea_A 3 AMLKFLSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSV---TEAK 78 (261)
T ss_dssp -CCSSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTT---CCHH
T ss_pred ccccceEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhc---Cchh
Confidence 467889999999999999999998 999999999999999999999999999999999999999999987542 2223
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 158 (261)
T 3pea_A 79 QATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAK 158 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence 3344555566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.+++.....++...+ +...+..++
T Consensus 159 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~ 238 (261)
T 3pea_A 159 ACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVF 238 (261)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888777 8999999999999999999876544444443 355666666
Q ss_pred -CcCcHHHHHHhhcCCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~~ 287 (288)
++|..|++.+|+|||+|+|.
T Consensus 239 ~s~d~~eg~~af~ekr~P~f~ 259 (261)
T 3pea_A 239 TSEDGREGVAAFLEKRKPSFS 259 (261)
T ss_dssp HSHHHHHHHHHHHTTSCCCCC
T ss_pred CCHHHHHHHHHHHcCCCCCCC
Confidence 78999999999999999983
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-57 Score=400.43 Aligned_cols=252 Identities=17% Similarity=0.286 Sum_probs=225.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
+++|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.... .......
T Consensus 3 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~ 81 (268)
T 3i47_A 3 LSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMA-NFTEEEN 81 (268)
T ss_dssp CCSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHH-TCCHHHH
T ss_pred CCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccc-cccHHHH
Confidence 567999999999999999999999999999999999999999999999999999999999999999986532 1223333
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.. |+
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~ 160 (268)
T 3i47_A 82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAK 160 (268)
T ss_dssp HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHH
Confidence 3455667789999999999999999999999999999999999999999999999999999999887 789999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhh-H-HHHHHHHHHHc-
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNS-V-IHRIDIVDKCF- 267 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~-~-~~~~~~~~~~~- 267 (288)
+|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++. . ..+...+..++
T Consensus 161 ~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~ 240 (268)
T 3i47_A 161 MLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRV 240 (268)
T ss_dssp HHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999888777 8999999999999999999876655554 3 33355666666
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
++|..|++.+|+|||+|+|
T Consensus 241 s~d~~eg~~AF~ekR~p~f 259 (268)
T 3i47_A 241 SDEGQEGLKAFLNKEIPNW 259 (268)
T ss_dssp SHHHHHHHHHHHHTCCCTT
T ss_pred CHHHHHHHHHHHcCCCCCC
Confidence 7899999999999999999
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-57 Score=414.19 Aligned_cols=260 Identities=33% Similarity=0.558 Sum_probs=226.1
Q ss_pred CccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhcc
Q 023017 28 VTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQ 106 (288)
Q Consensus 28 ~~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~ 106 (288)
+++..++.|.++++|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| +.||+|+|++++.... .
T Consensus 3 m~t~~~e~vl~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~-~ 81 (353)
T 4hdt_A 3 MVTAKNEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSA-K 81 (353)
T ss_dssp -----CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHH-H
T ss_pred CccCCCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhcc-c
Confidence 4455677899999999999999999999999999999999999999999999999999999 7999999999986543 2
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcc
Q 023017 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 186 (288)
.+......++...++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~ 161 (353)
T 4hdt_A 82 ADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAP 161 (353)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhh
Confidence 33455667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH---------------------------------------
Q 023017 187 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL--------------------------------------- 227 (288)
Q Consensus 187 g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~--------------------------------------- 227 (288)
|..+++|++||++++|+||+++||||+|||+++|++.+..+
T Consensus 162 g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~ 241 (353)
T 4hdt_A 162 GKLGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVAD 241 (353)
T ss_dssp TTHHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHH
T ss_pred hHHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHH
Confidence 96699999999999999999999999999999987655433
Q ss_pred -----------------HHhhcCCHHHHHHHHHHhhccCCC-ChhhHHH-HHHHHHHHc-CcCcHHHHHHhh--cCCCCC
Q 023017 228 -----------------GKLVTDDPSVIEACLEKYSDLVYP-DKNSVIH-RIDIVDKCF-GLDTVEEIIDSL--DDVAPS 285 (288)
Q Consensus 228 -----------------~~l~~~~~~~~~~~k~~l~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~e~~~~~l--ekr~p~ 285 (288)
..++.++|.+++.+|+.+++.... .+++.++ +..++..++ ++|..||+++|+ |||+|+
T Consensus 242 i~~~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~ 321 (353)
T 4hdt_A 242 IIAALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPK 321 (353)
T ss_dssp HHHHHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCC
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCC
Confidence 358899999999999999887654 4555544 467777888 689999999999 999999
Q ss_pred CCC
Q 023017 286 YAY 288 (288)
Q Consensus 286 ~~~ 288 (288)
|.|
T Consensus 322 w~p 324 (353)
T 4hdt_A 322 WRP 324 (353)
T ss_dssp CSS
T ss_pred CCC
Confidence 954
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=401.10 Aligned_cols=251 Identities=22% Similarity=0.345 Sum_probs=229.9
Q ss_pred CCcEEEE-eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~-~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
++.|.++ .+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| +.||+|.|++++... +..
T Consensus 7 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~ 82 (265)
T 3kqf_A 7 LQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM----NEE 82 (265)
T ss_dssp CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC----CHH
T ss_pred CCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc----CHH
Confidence 5689999 8999999999999999999999999999999999999999999999999 999999999987542 344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 162 (265)
T 3kqf_A 83 QVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 162 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence 4556677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++.... +...+..++
T Consensus 163 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~ 242 (265)
T 3kqf_A 163 AKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVI 242 (265)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888887 8999999999999999999877666655544 356666777
Q ss_pred -CcCcHHHHHHhhcCCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~~ 287 (288)
++|..|++.+|+|||+|+|.
T Consensus 243 ~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3kqf_A 243 HTKDRLEGLQAFKEKRTPMYK 263 (265)
T ss_dssp TCHHHHHHHHHHHTTSCCCCC
T ss_pred CCHHHHHHHHHHHcCCCCCCC
Confidence 78999999999999999983
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=405.21 Aligned_cols=249 Identities=22% Similarity=0.217 Sum_probs=224.1
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.|.++++++|++||||||+++|++|.+|+.+|.++++.+ |+++|+|||||.|+.||+|.|++++.. .+....
T Consensus 15 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~ 88 (275)
T 3hin_A 15 PSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRE----RDATEG 88 (275)
T ss_dssp GGGEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCC----CCHHHH
T ss_pred CCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhc----cChhhH
Confidence 56899999999999999999999999999999999999999 578999999999999999999998753 233334
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |+
T Consensus 89 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ 168 (275)
T 3hin_A 89 LVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMA 168 (275)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHH
Confidence 45566778899999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++.....++.... +...+..++ +
T Consensus 169 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s 248 (275)
T 3hin_A 169 DMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQSD 248 (275)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999888887 8999999999999999998765555555443 355566666 7
Q ss_pred cCcHHHHHHhhcCCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~~ 287 (288)
+|..|++.+|+|||+|+|.
T Consensus 249 ~d~~eg~~AF~ekR~p~f~ 267 (275)
T 3hin_A 249 QEAKTRIRAFLDHKTAKVR 267 (275)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCCCCC
Confidence 8999999999999999984
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=394.33 Aligned_cols=246 Identities=22% Similarity=0.282 Sum_probs=222.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++..
T Consensus 4 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~--------- 74 (255)
T 3p5m_A 4 SMNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT--------- 74 (255)
T ss_dssp CBTTEEEEEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH---------
T ss_pred CCceEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc---------
Confidence 34579999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 75 -~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 153 (255)
T 3p5m_A 75 -AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRART 153 (255)
T ss_dssp -HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHH
T ss_pred -hHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 14456677889999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++.....++...+ +...+..++
T Consensus 154 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~ 233 (255)
T 3p5m_A 154 SRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVE 233 (255)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999888888 8999999999999999998776665555444 356667777
Q ss_pred CcCcHHHHHHhhcCCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~~ 287 (288)
++|..|++.+|+|||+|+|.
T Consensus 234 s~d~~eg~~af~ekr~p~f~ 253 (255)
T 3p5m_A 234 TADFREGARAFRERRTPNFR 253 (255)
T ss_dssp SHHHHHHHHHHHTTSCCCCC
T ss_pred CHHHHHHHHHHHcCCCCCCC
Confidence 68999999999999999983
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-56 Score=400.53 Aligned_cols=258 Identities=19% Similarity=0.222 Sum_probs=222.3
Q ss_pred cCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCC-
Q 023017 30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK- 108 (288)
Q Consensus 30 ~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~- 108 (288)
++|+..|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++........
T Consensus 20 ~~m~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~ 99 (290)
T 3sll_A 20 GSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGL 99 (290)
T ss_dssp ---CCEEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTC
T ss_pred CCCCeEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccc
Confidence 3456689999999999999999999999999999999999999999999999999999999999999998754311111
Q ss_pred --hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCC-CchHHHHhhc
Q 023017 109 --LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD-AGASFYLSHL 185 (288)
Q Consensus 109 --~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~-~g~~~~l~~~ 185 (288)
......+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~ 179 (290)
T 3sll_A 100 TQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRA 179 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHH
Confidence 1224456677888999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC-CChhhHHH-HHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY-PDKNSVIH-RID 261 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~-~~~~~~~~-~~~ 261 (288)
+|.. +++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++.... ..++...+ +..
T Consensus 180 vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~~ 259 (290)
T 3sll_A 180 IGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGL 259 (290)
T ss_dssp HCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 9998 99999999999999999999999999999998888777 89999999999999999988766 55555444 345
Q ss_pred HHHHHc--CcCcHHHHHHhhcCCCCCCC
Q 023017 262 IVDKCF--GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 262 ~~~~~~--~~~~~e~~~~~lekr~p~~~ 287 (288)
.+..++ ++|..|++.+|+|||+|+|.
T Consensus 260 ~~~~~~~~s~d~~eg~~AFlekR~P~f~ 287 (290)
T 3sll_A 260 GQLYVRLLTDNFEEATAARKEKRPAEFR 287 (290)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 555555 78999999999999999984
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-56 Score=398.03 Aligned_cols=249 Identities=24% Similarity=0.368 Sum_probs=222.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++... ....
T Consensus 24 ~~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~- 98 (278)
T 3h81_A 24 YETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADL----TFAD- 98 (278)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTC----CHHH-
T ss_pred CCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhcc----Chhh-
Confidence 56799999999999999999999999999999999999999999999999999999999999999998642 1111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
.+.......+.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 99 -~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ 177 (278)
T 3h81_A 99 -AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAM 177 (278)
T ss_dssp -HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence 2222222236789999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++...+. ...+..++ +
T Consensus 178 ~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s 257 (278)
T 3h81_A 178 DLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFAT 257 (278)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999998888777 89999999999999999998776666655443 56677777 6
Q ss_pred cCcHHHHHHhhcCCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~~ 287 (288)
+|..|++.+|+|||+|+|.
T Consensus 258 ~d~~eg~~AF~ekR~P~f~ 276 (278)
T 3h81_A 258 EDQSEGMAAFIEKRAPQFT 276 (278)
T ss_dssp HHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHcCCCCCCC
Confidence 8999999999999999984
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=396.77 Aligned_cols=251 Identities=17% Similarity=0.241 Sum_probs=211.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
+++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++...........
T Consensus 3 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (266)
T 3fdu_A 3 LHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGP 82 (266)
T ss_dssp CCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSC
T ss_pred CCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999873211111110
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.+...+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 160 (266)
T 3fdu_A 83 --AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKA 160 (266)
T ss_dssp --GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHH
Confidence 1223456788889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|+.++|+||+++||||+|+| ++.+.+.++ ++++..+|.+++.+|+.++... ..++...+ +...+..++
T Consensus 161 ~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~ 237 (266)
T 3fdu_A 161 AELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQ 237 (266)
T ss_dssp HHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999 787777777 8999999999999999998753 22333322 345566666
Q ss_pred CcCcHHHHHHhhcCCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~~ 287 (288)
++|..|++.+|+|||+|+|.
T Consensus 238 s~d~~eg~~aF~ekR~p~~~ 257 (266)
T 3fdu_A 238 SPEMLEAVQAFMQKRQPDFS 257 (266)
T ss_dssp CHHHHHHHHHHC--------
T ss_pred CHHHHHHHHHHHcCCCCCCC
Confidence 68999999999999999983
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-56 Score=394.39 Aligned_cols=249 Identities=24% Similarity=0.321 Sum_probs=224.6
Q ss_pred CCcEEEEeeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~-v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
++.|.++++++ |++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++... ....
T Consensus 8 ~~~i~~~~~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~ 83 (263)
T 3moy_A 8 YTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTL----TPHQ 83 (263)
T ss_dssp CSSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTC----CHHH
T ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhcc----Cchh
Confidence 46799999998 999999999999999999999999999999999999999999999999999999987532 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 84 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A 161 (263)
T 3moy_A 84 --ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKA 161 (263)
T ss_dssp --HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHH
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHH
Confidence 2234456778899999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++...+ +.+.+..++
T Consensus 162 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~ 241 (263)
T 3moy_A 162 MDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYAMFD 241 (263)
T ss_dssp HHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998888777 8999999999999999999876666655544 356677777
Q ss_pred CcCcHHHHHHhhcCCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~~ 287 (288)
++|..|++.+|+|||+|+|.
T Consensus 242 s~d~~eg~~AF~ekR~p~f~ 261 (263)
T 3moy_A 242 THDQTEGMTAFLEKRTPEFT 261 (263)
T ss_dssp SHHHHHHHHHHHTTSCCCCC
T ss_pred CHHHHHHHHHHHhCCCCCCC
Confidence 68999999999999999984
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=398.42 Aligned_cols=254 Identities=23% Similarity=0.245 Sum_probs=211.1
Q ss_pred cCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCCh
Q 023017 30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 30 ~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 109 (288)
+...++|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++..... .
T Consensus 16 ~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~ 92 (278)
T 4f47_A 16 GESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPP---G 92 (278)
T ss_dssp ---CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-----------------
T ss_pred CCCCCceEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccch---h
Confidence 3456789999999999999999999999999999999999999999999999999999999999999998764311 1
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcc
Q 023017 110 EECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~---~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 186 (288)
... ......+.++..+. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 93 ~~~-~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 171 (278)
T 4f47_A 93 DSF-KDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQI 171 (278)
T ss_dssp ---------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHS
T ss_pred hhH-HHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh
Confidence 110 00012234445566 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHH
Q 023017 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIV 263 (288)
Q Consensus 187 g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~ 263 (288)
|.. +++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++.....++...+. ...+
T Consensus 172 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~ 251 (278)
T 4f47_A 172 PYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQAILRTIRETEGMHENEAFKIDTRIG 251 (278)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999998888877 89999999999999999998776666555443 5666
Q ss_pred HHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 264 DKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 264 ~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
..++ ++|..|++.+|+|||+|+|.
T Consensus 252 ~~~~~s~d~~eg~~Af~ekr~p~f~ 276 (278)
T 4f47_A 252 IEVFLSDDAKEGPQAFAQKRKPNFQ 276 (278)
T ss_dssp GGGGGSSHHHHHHHHHHTTSCCCCC
T ss_pred HHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 6777 78999999999999999983
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-56 Score=393.29 Aligned_cols=254 Identities=18% Similarity=0.200 Sum_probs=223.3
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhc-cCChHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QGKLEEC 112 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 112 (288)
+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++..... .+..+..
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (269)
T 1nzy_A 3 EAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHF 82 (269)
T ss_dssp SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHH
T ss_pred ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999998642100 0011111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 162 (269)
T 1nzy_A 83 RIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAM 162 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHH
Confidence 34455577888999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++.......+.... +...+..++ +
T Consensus 163 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s 242 (269)
T 1nzy_A 163 ELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTH 242 (269)
T ss_dssp HHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998888877777 8999999999999999998776555554443 345566666 7
Q ss_pred cCcHHHHHHhhcCCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~~ 287 (288)
+|..|++.+|+|||+|+|.
T Consensus 243 ~d~~egi~af~ekr~p~f~ 261 (269)
T 1nzy_A 243 PHFMPCLTRFLDGHRADRP 261 (269)
T ss_dssp TTHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 8999999999999999984
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-56 Score=395.36 Aligned_cols=258 Identities=20% Similarity=0.287 Sum_probs=214.6
Q ss_pred ccCCCCcEEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC
Q 023017 29 TDDLCNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107 (288)
Q Consensus 29 ~~~~~~~v~~~~~~~v~~i~ln-~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~ 107 (288)
....++.|.++++++|++|||| ||+++|+||.+|+.+|.++++.++.|+. ++|||||.|+.||+|.|++++.......
T Consensus 18 ~~~~~~~v~~~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~ 96 (291)
T 2fbm_A 18 GSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNN 96 (291)
T ss_dssp ---CCSSEEEEECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHC
T ss_pred CCCCcceEEEEEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhccccc
Confidence 3456778999999999999999 6999999999999999999999998875 9999999999999999999875421111
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
.......+...+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG 176 (291)
T 2fbm_A 97 RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMG 176 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHh
Confidence 11223344455678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~ 264 (288)
.. |++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++.... +.+.+.
T Consensus 177 ~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~ 256 (291)
T 2fbm_A 177 KASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLR 256 (291)
T ss_dssp HHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccCHHHHHHHHHHHHH
Confidence 98 99999999999999999999999999999998877777 8999999999999999998764333333332 345566
Q ss_pred HHc-CcCcHHHHHHh-hcCCCCCCC
Q 023017 265 KCF-GLDTVEEIIDS-LDDVAPSYA 287 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~-lekr~p~~~ 287 (288)
.++ ++|..|++.+| +|||+|+|.
T Consensus 257 ~~~~s~d~~eg~~Af~~ekR~P~f~ 281 (291)
T 2fbm_A 257 KIWSSAQGIESMLKIPLLGYKAAFP 281 (291)
T ss_dssp HHHTSHHHHHHHHTC----------
T ss_pred HHhcCHHHHHHHHHHHhcCCCCCCC
Confidence 666 68999999999 999999983
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-56 Score=396.34 Aligned_cols=255 Identities=19% Similarity=0.259 Sum_probs=222.8
Q ss_pred cCCCCcEEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCC
Q 023017 30 DDLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 30 ~~~~~~v~~~~~~-~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 108 (288)
++.+++|.+++++ +|++||||||+ +|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.... .+
T Consensus 9 ~~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~ 85 (272)
T 3qk8_A 9 YQDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETI--GD 85 (272)
T ss_dssp GGGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHH--HC
T ss_pred CCCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccc--cc
Confidence 3456789999986 89999999999 99999999999999999999999999999999999999999999986532 12
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
......+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 165 (272)
T 3qk8_A 86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGM 165 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence 23344566677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC 266 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~ 266 (288)
. |++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++..............+....+
T Consensus 166 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~e~~~ 245 (272)
T 3qk8_A 166 AKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNHWYRMFGPTFETSLGLEFLG 245 (272)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 9 99999999999999999999999999999998888877 899999999999999999854321111222222333455
Q ss_pred c-CcCcHHHHHHhhcCCCCCCC
Q 023017 267 F-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 267 ~-~~~~~e~~~~~lekr~p~~~ 287 (288)
+ ++|..|++.+|+|||+|+|.
T Consensus 246 ~~s~d~~eg~~Af~ekR~p~f~ 267 (272)
T 3qk8_A 246 FTGPDVQEGLAAHRQKRPARFT 267 (272)
T ss_dssp TTSSHHHHHHHHHHTTSCCCC-
T ss_pred hCCHHHHHHHHHHHcCCCCCCC
Confidence 6 78999999999999999983
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-56 Score=391.18 Aligned_cols=254 Identities=18% Similarity=0.261 Sum_probs=220.5
Q ss_pred CCCcEEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln-~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.++.|.++++++|++|||| ||+++|++|.+|+.+|.++++.++.|+. ++|||||.|+.||+|.|++++..........
T Consensus 3 ~~~~i~~~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (261)
T 2gtr_A 3 RYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR 81 (261)
T ss_dssp CCSSEEEEEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred ccceEEEEEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCCCccccccCchhhhhccccchhh
Confidence 3567999999999999999 6999999999999999999999998874 9999999999999999999875421111112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+...+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 161 (261)
T 2gtr_A 82 ESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS 161 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHH
Confidence 2334455667888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++.... +...+..++
T Consensus 162 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 241 (261)
T 2gtr_A 162 ANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIW 241 (261)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877777 8999999999999999998764433333332 344555666
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
++|..|++.+|+|||+|+|
T Consensus 242 ~s~d~~eg~~af~ekr~P~f 261 (261)
T 2gtr_A 242 GSAQGMDSMLKYLQRKIDEF 261 (261)
T ss_dssp HSTTTTHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHccCCCCC
Confidence 7899999999999999986
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-57 Score=400.84 Aligned_cols=258 Identities=19% Similarity=0.242 Sum_probs=218.7
Q ss_pred ccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhc--c
Q 023017 29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--Q 106 (288)
Q Consensus 29 ~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~--~ 106 (288)
...|++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++..... .
T Consensus 6 ~~~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 85 (274)
T 3tlf_A 6 PVDSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIY 85 (274)
T ss_dssp --CCCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC------------
T ss_pred CCCcCCceEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhcccccc
Confidence 34467789999999999999999999999999999999999999999999999999999999999999998764321 0
Q ss_pred C-ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc
Q 023017 107 G-KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 107 ~-~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
. ........+..+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~ 164 (274)
T 3tlf_A 86 ERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRV 164 (274)
T ss_dssp --CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHH
Confidence 0 0000011122334567778999999999999999999999999999999999999999999999999 9999999999
Q ss_pred chHH-HHHHHhcCC--CCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H
Q 023017 186 PGHL-GEFLALTGA--KLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I 260 (288)
Q Consensus 186 ~g~~-a~~l~l~g~--~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~ 260 (288)
+|.. |++|+++|+ +++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++...+. .
T Consensus 165 vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~ 244 (274)
T 3tlf_A 165 LPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAE 244 (274)
T ss_dssp SCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hCHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999 999999999 99999999999999999999999888887 89999999999999999998776666555443 5
Q ss_pred HHHHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 261 DIVDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 261 ~~~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
..+..++ ++|..|++.+|+|||+|+|.
T Consensus 245 ~~~~~~~~s~d~~eg~~af~ekr~p~f~ 272 (274)
T 3tlf_A 245 TFRERVLRTEDAAEGPRAFVEKRQPNWQ 272 (274)
T ss_dssp HHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 6666777 68999999999999999983
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=393.69 Aligned_cols=249 Identities=20% Similarity=0.272 Sum_probs=227.2
Q ss_pred cEEEEee--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 35 QVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 35 ~v~~~~~--~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
.|.++++ ++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.. .......
T Consensus 25 ~v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~---~~~~~~~ 101 (286)
T 3myb_A 25 PLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA---EPSREYY 101 (286)
T ss_dssp CSEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHS---SCCHHHH
T ss_pred eEEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhc---cccHHHH
Confidence 4999999 9999999999999999999999999999999999999999999999999999999999864 2334455
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|.. ++
T Consensus 102 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~ 180 (286)
T 3myb_A 102 EKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAF 180 (286)
T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHH
Confidence 6677788899999999999999999999999999999999999999999999999999999 788899999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++...+ +.+.+..++ +
T Consensus 181 ~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s 260 (286)
T 3myb_A 181 EMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMMD 260 (286)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999998888877 8999999999999999998876656555544 356666777 7
Q ss_pred cCcHHHHHHhhcCCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~~ 287 (288)
+|..|++.+|+|||+|+|.
T Consensus 261 ~d~~egi~aFlekr~p~f~ 279 (286)
T 3myb_A 261 PSALEGVSAFLEKRRPEWH 279 (286)
T ss_dssp HHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHccCCCCCC
Confidence 8999999999999999984
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=388.97 Aligned_cols=249 Identities=26% Similarity=0.335 Sum_probs=216.8
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++... ...+...
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~~~ 79 (257)
T 2ej5_A 3 ETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEE---MDHGDVL 79 (257)
T ss_dssp SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC----------CHHHHH
T ss_pred CceEEEeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhc---cchhHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999987532 1111111
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.. .+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++
T Consensus 80 ~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T 2ej5_A 80 RS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE 157 (257)
T ss_dssp HH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred HH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence 11 256788899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++.......+.... +...+..++ ++
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~ 237 (257)
T 2ej5_A 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTS 237 (257)
T ss_dssp HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCh
Confidence 99999999999999999999999999998888777 8999999999999999998765445444433 345566666 78
Q ss_pred CcHHHHHHhhcCCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~~ 287 (288)
|..|++.+|+|||+|+|.
T Consensus 238 d~~eg~~af~ekr~p~~~ 255 (257)
T 2ej5_A 238 DHREGVKAFFEKRKPLFQ 255 (257)
T ss_dssp HHHHHHHHHTTTCCCCCC
T ss_pred HHHHHHHHHhcCCCCCCC
Confidence 999999999999999984
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-55 Score=387.92 Aligned_cols=250 Identities=18% Similarity=0.194 Sum_probs=223.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.++.+.++++++|++|+|||| ++|++|.+|+.+|.++++.++.|+++|+|||+| .|+.||+|.|++++.. .. .
T Consensus 7 ~~~~i~~~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~~-~ 80 (265)
T 2ppy_A 7 KKQYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS----AD-P 80 (265)
T ss_dssp ECSSEEEEEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT----SC-H
T ss_pred CCCeEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc----cc-h
Confidence 466899999999999999999 899999999999999999999999999999999 8999999999998753 11 2
Q ss_pred HHHHHHHHH-HHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCce-EEecccccccccCCCchHHHHhhcchH
Q 023017 111 ECKDFFRTL-YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 111 ~~~~~~~~~-~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
....+...+ ++++.++.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 160 (265)
T 2ppy_A 81 RFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGY 160 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCH
Confidence 223344456 788899999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~ 265 (288)
. +++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++.......+.... +.+.+..
T Consensus 161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~ 240 (265)
T 2ppy_A 161 SRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNL 240 (265)
T ss_dssp HHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 8 99999999999999999999999999999998888777 8999999999999999998876655555443 3555666
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
++ +++..|++.+|+|||+|+|.
T Consensus 241 ~~~s~d~~egi~af~ekr~p~~~ 263 (265)
T 2ppy_A 241 LFRSEDAKEGLSAFLEKRQPNWK 263 (265)
T ss_dssp HHTSHHHHHHHHHHHTTSCCCCC
T ss_pred HhCCHHHHHHHHHHHcCCCCCCC
Confidence 66 68999999999999999984
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=389.82 Aligned_cols=248 Identities=22% Similarity=0.269 Sum_probs=215.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
+++|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++ ... . ...
T Consensus 8 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~---~---~~~ 80 (265)
T 3rsi_A 8 ARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW---M---VRD 80 (265)
T ss_dssp -CCEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------
T ss_pred CCcEEEEEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc---c---cch
Confidence 568999999999999999999999999999999999999999999999999999999999999998 221 1 111
Q ss_pred HHHHHHHHH-HHHHH-h--cCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 113 KDFFRTLYS-FIYLL-G--THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 113 ~~~~~~~~~-l~~~l-~--~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
..+....++ ++..+ . ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 160 (265)
T 3rsi_A 81 GSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPY 160 (265)
T ss_dssp ----CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCH
T ss_pred HHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence 122223345 77788 8 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~ 265 (288)
. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.+++.....++...+. ...+..
T Consensus 161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~ 240 (265)
T 3rsi_A 161 TKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTRP 240 (265)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999888887 89999999999999999998776666555443 556666
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
++ ++|..|++.+|+|||+|+|.
T Consensus 241 ~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3rsi_A 241 VITSADAREGLAAFKEKREARFT 263 (265)
T ss_dssp HHTSHHHHHHHHHHHHTSCCCCC
T ss_pred HhcCHHHHHHHHHHHcCCCCCCC
Confidence 67 68999999999999999984
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-56 Score=390.84 Aligned_cols=253 Identities=18% Similarity=0.242 Sum_probs=220.9
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcc-cccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF-CAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F-~aG~Dl~~~~~~~~~~~~~~ 111 (288)
+++|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.| |+|.|++++...........
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T 3lke_A 3 LSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVR 82 (263)
T ss_dssp CCSEEEEECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHH
T ss_pred CcEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHH
Confidence 46799999999999999999999999999999999999999999999999999999999 99999999875221233445
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A 162 (263)
T 3lke_A 83 LREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQT 162 (263)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHH
Confidence 566777788999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecC-CCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSV-SEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
++|+++|++++|+||+++||||+|+| ++++.+.+.++ ++++..+|.+++.+|+.++......++...+ +...+..++
T Consensus 163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 242 (263)
T 3lke_A 163 MNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALF 242 (263)
T ss_dssp HHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 88888888777 8999999999999999998765444444433 356677777
Q ss_pred -CcCcHHHHHHhhcCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPS 285 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~ 285 (288)
++|..|++.+|+||++|+
T Consensus 243 ~s~d~~e~~~~~~~~~~~~ 261 (263)
T 3lke_A 243 KQTEIKKRLEALVEGHHHH 261 (263)
T ss_dssp TSHHHHHHHHHC-------
T ss_pred cCHHHHHHHHhhhccCCCC
Confidence 689999999999999986
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=392.42 Aligned_cols=257 Identities=23% Similarity=0.328 Sum_probs=201.6
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++...........
T Consensus 7 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 86 (276)
T 2j5i_A 7 RWKTVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEIL 86 (276)
T ss_dssp CCSSEEEEEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTH
T ss_pred CCceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999998753211111111
Q ss_pred HHHHHHHHHHH-HHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 112 CKDFFRTLYSF-IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 112 ~~~~~~~~~~l-~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
...+......+ +..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 166 (276)
T 2j5i_A 87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQ 166 (276)
T ss_dssp HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHH
Confidence 22222333343 6678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHH-
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKC- 266 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~- 266 (288)
+++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++......+..... .+.+..+
T Consensus 167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 246 (276)
T 2j5i_A 167 SLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSR 246 (276)
T ss_dssp HHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988888777 89999999999999999987766555544432 3333333
Q ss_pred -c-Cc-CcHHHHHHhhcCC--CCCC-CC
Q 023017 267 -F-GL-DTVEEIIDSLDDV--APSY-AY 288 (288)
Q Consensus 267 -~-~~-~~~e~~~~~lekr--~p~~-~~ 288 (288)
+ ++ |..|++.+|+||| +|++ .|
T Consensus 247 ~~~s~~d~~eg~~AF~ekr~r~p~~~~~ 274 (276)
T 2j5i_A 247 LLDTEGGREQGMKQFLDDKSIKPGLQAY 274 (276)
T ss_dssp HHC-------------------------
T ss_pred hcCChHHHHHHHHHHHhcccCCCCcccC
Confidence 4 56 8999999999998 8988 54
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=393.03 Aligned_cols=251 Identities=17% Similarity=0.205 Sum_probs=224.0
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
+..+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++... .+.+..
T Consensus 32 ~~~v~~~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---~~~~~~ 108 (287)
T 2vx2_A 32 PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEE---QGRDYH 108 (287)
T ss_dssp CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGG---GCHHHH
T ss_pred CcceEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcc---cchhHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999987532 122333
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|.. ++
T Consensus 109 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~ 187 (287)
T 2vx2_A 109 AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVAL 187 (287)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHH
Confidence 45556677889999999999999999999999999999999999999999999999999999999999 99999998 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++............ +...+..++ +
T Consensus 188 ~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s 267 (287)
T 2vx2_A 188 EMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLAL 267 (287)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999998888777 8999999999999999998776555554443 355566666 6
Q ss_pred cCcHHHHHHhhcCCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~~ 287 (288)
+|..|++.+|+|||+|+|.
T Consensus 268 ~d~~egi~af~ekr~p~f~ 286 (287)
T 2vx2_A 268 RDGQEGITAFLQKRKPVWS 286 (287)
T ss_dssp HHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHcCCCCCCC
Confidence 8999999999999999985
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-56 Score=395.22 Aligned_cols=253 Identities=16% Similarity=0.233 Sum_probs=214.5
Q ss_pred CCCCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCC
Q 023017 31 DLCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 31 ~~~~~v~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 108 (288)
..++.|.++++ ++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| +.||+|.|++++.... ..
T Consensus 24 ~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~--~~ 101 (289)
T 3t89_A 24 EGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYG--GY 101 (289)
T ss_dssp TTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------
T ss_pred CCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccc--cc
Confidence 34678999999 99999999999999999999999999999999999999999999999 5999999999875321 11
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
.+........+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|.
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~ 181 (289)
T 3t89_A 102 KDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ 181 (289)
T ss_dssp --------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence 11111122235678888999999999999999999999999999999999999999999999988888889999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~ 265 (288)
. |++|+++|+.++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++..... ..... .+.+.+..
T Consensus 182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~ 260 (289)
T 3t89_A 182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDG-QAGLQELAGNATML 260 (289)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-chHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999998888887 899999999999999999876432 22222 22344556
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ ++|..|++.+|+|||+|+|
T Consensus 261 ~~~s~d~~Eg~~AF~ekR~P~f 282 (289)
T 3t89_A 261 FYMTEEGQEGRNAFNQKRQPDF 282 (289)
T ss_dssp HTTSSTTTHHHHHHHTTSCCCC
T ss_pred HhcCHHHHHHHHHHhcCCCCCC
Confidence 66 7899999999999999998
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-57 Score=403.22 Aligned_cols=256 Identities=21% Similarity=0.242 Sum_probs=186.3
Q ss_pred CCCcEEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHh--hccCC
Q 023017 32 LCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHF--MNQGK 108 (288)
Q Consensus 32 ~~~~v~~~~~~-~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~--~~~~~ 108 (288)
.++.|.+++++ +|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++... .....
T Consensus 27 ~~~~v~~~~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~ 106 (298)
T 3qre_A 27 AQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM 106 (298)
T ss_dssp -CCSEEEEECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred CCCeEEEEEeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 46789999999 9999999999999999999999999999999999999999999999999999999987541 00100
Q ss_pred h--HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcc
Q 023017 109 L--EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186 (288)
Q Consensus 109 ~--~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 186 (288)
. .....+....+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 186 (298)
T 3qre_A 107 AKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLT 186 (298)
T ss_dssp --------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHS
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhc
Confidence 0 01112223345667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC-CHHHHHHHHHHhhccCCCChhhHHH-HHHH
Q 023017 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD-DPSVIEACLEKYSDLVYPDKNSVIH-RIDI 262 (288)
Q Consensus 187 g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~-~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~ 262 (288)
|.. |++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++.. +|.+++.+|+.+++.....+..... +...
T Consensus 187 G~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~ 266 (298)
T 3qre_A 187 SWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVL 266 (298)
T ss_dssp CHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGGC------------
T ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999 99999999999999999999999999999998888887 899998 9999999999998876554443332 3445
Q ss_pred HHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 263 VDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 263 ~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
+..++ ++|..|++.+|+|||+|+|.
T Consensus 267 ~~~~~~s~d~~Egv~AF~ekR~P~f~ 292 (298)
T 3qre_A 267 LREAMPRPDVIEGIVSFLEKRPPQFP 292 (298)
T ss_dssp --------------------------
T ss_pred HHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 55666 68999999999999999984
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-56 Score=395.11 Aligned_cols=252 Identities=19% Similarity=0.206 Sum_probs=201.1
Q ss_pred CccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC
Q 023017 28 VTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107 (288)
Q Consensus 28 ~~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~ 107 (288)
+++.+++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.......
T Consensus 5 ~~~~~m~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 84 (262)
T 3r9q_A 5 MSEEMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNE 84 (262)
T ss_dssp -----CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCC
T ss_pred CCcccCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhh
Confidence 34445667999999999999999999999999999999999999999999999999999999999999999875421110
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
... .....+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 85 -~~~-----~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 158 (262)
T 3r9q_A 85 -LHP-----HGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIG 158 (262)
T ss_dssp -CCT-----TSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHC
T ss_pred -HHH-----hhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhC
Confidence 000 01112333466999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~ 264 (288)
.. |++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++.....++...+. .. +.
T Consensus 159 ~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~ 237 (262)
T 3r9q_A 159 HSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIAQWGMAEEAALDNEFG-SI 237 (262)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHT-HH
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH-HH
Confidence 99 99999999999999999999999999999999888888 89999999999999999998776666655543 44 55
Q ss_pred HHcCcCcHHHHHHhhcCCCCCC
Q 023017 265 KCFGLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~~~~~~e~~~~~lekr~p~~ 286 (288)
.++++|..|++.+|+|||+|.+
T Consensus 238 ~~~~sd~~Eg~~AF~ekr~p~~ 259 (262)
T 3r9q_A 238 ERVATEALEGAGRFAAGEGRHG 259 (262)
T ss_dssp HHHHC-----------------
T ss_pred HHhccHHHHHHHHHHcCCCCCC
Confidence 6663399999999999999987
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=390.09 Aligned_cols=250 Identities=20% Similarity=0.272 Sum_probs=222.2
Q ss_pred ccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCC
Q 023017 29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 29 ~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 108 (288)
++.+.+.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.... .+
T Consensus 23 ~~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~ 100 (276)
T 3rrv_A 23 VYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELS--AD 100 (276)
T ss_dssp -CCCCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHH--HC
T ss_pred cCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcc--cc
Confidence 4456678999999999999999999999999999999999999999999999999999999999999999886531 12
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
......+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 180 (276)
T 3rrv_A 101 ADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISL 180 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCH
Confidence 33445566777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~ 265 (288)
. +++++++|++++|+||+++||||+|+ +++.+.+.++ ++++..+|.+++.+|+.+++.....++...+ +...+..
T Consensus 181 ~~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~ 258 (276)
T 3rrv_A 181 LLAKEYALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQ 258 (276)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999 7888877777 8999999999999999998764433443333 3555667
Q ss_pred Hc-CcCcHHHHHHhhcCC
Q 023017 266 CF-GLDTVEEIIDSLDDV 282 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr 282 (288)
++ ++|..|++.+|+|||
T Consensus 259 ~~~s~d~~eg~~AF~ekR 276 (276)
T 3rrv_A 259 SFVTEDFRSIVTKLADKN 276 (276)
T ss_dssp HTTSHHHHHHHHHHHCCC
T ss_pred HhCCHHHHHHHHHHHcCC
Confidence 77 689999999999997
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-55 Score=389.66 Aligned_cols=255 Identities=17% Similarity=0.244 Sum_probs=222.5
Q ss_pred CCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC---C
Q 023017 33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---K 108 (288)
Q Consensus 33 ~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~---~ 108 (288)
+++|.+++ +++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++....... +
T Consensus 2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 81 (275)
T 1dci_A 2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD 81 (275)
T ss_dssp CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence 45788998 6789999999999999999999999999999999999999999999999999999999876431111 1
Q ss_pred h----HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhh
Q 023017 109 L----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184 (288)
Q Consensus 109 ~----~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 184 (288)
. .....+...+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r 161 (275)
T 1dci_A 82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK 161 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHH
Confidence 1 122234455677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchH-H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-H
Q 023017 185 LPGH-L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-R 259 (288)
Q Consensus 185 ~~g~-~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~ 259 (288)
++|. . |++|+++|++++|+||+++||||+|+|+ +++.+.+.++ ++++..+|.+++.+|+.++............ +
T Consensus 162 ~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e 241 (275)
T 1dci_A 162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYM 241 (275)
T ss_dssp TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 9998 8 9999999999999999999999999999 8888777777 8999999999999999998765444444433 3
Q ss_pred HHHHHHHc-CcCcHHHHHHhhcC---CCCCCC
Q 023017 260 IDIVDKCF-GLDTVEEIIDSLDD---VAPSYA 287 (288)
Q Consensus 260 ~~~~~~~~-~~~~~e~~~~~lek---r~p~~~ 287 (288)
...+..++ ++|..|++.+|+|| |+|+|.
T Consensus 242 ~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f~ 273 (275)
T 1dci_A 242 ATWNMSMLQTQDIIKSVQAAMEKKDSKSITFS 273 (275)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHTTCCGGGCCCC
T ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCC
Confidence 45566666 68999999999999 999983
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-56 Score=389.87 Aligned_cols=249 Identities=20% Similarity=0.262 Sum_probs=192.0
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.+..|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.........
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-- 81 (256)
T 3qmj_A 4 SMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNF-- 81 (256)
T ss_dssp --CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSC--
T ss_pred CcceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhH--
Confidence 456799999999999999999999999999999999999999999999999999999999999999998653222110
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 -~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 160 (256)
T 3qmj_A 82 -SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNA 160 (256)
T ss_dssp -CCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHH
Confidence 11223456788899999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.++..+|+.++......++...+ +...+..++
T Consensus 161 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~ 240 (256)
T 3qmj_A 161 AWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELMG 240 (256)
T ss_dssp HHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998888887 8999999999999999999876555444433 345566666
Q ss_pred CcCcHHHHHHhhcCCC
Q 023017 268 GLDTVEEIIDSLDDVA 283 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~ 283 (288)
++|..|++.+|+|||+
T Consensus 241 s~d~~eg~~af~ekr~ 256 (256)
T 3qmj_A 241 AQANAAALADFTDRRR 256 (256)
T ss_dssp ----------------
T ss_pred CHHHHHHHHHHHccCC
Confidence 6899999999999985
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-55 Score=385.50 Aligned_cols=249 Identities=23% Similarity=0.310 Sum_probs=220.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
+..|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++... ... .
T Consensus 4 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~-~ 78 (258)
T 2pbp_A 4 FVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKD----DPI-R 78 (258)
T ss_dssp CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTC----CHH-H
T ss_pred cceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cch-h
Confidence 45788999999999999999999999999999999999999999999999999999999999999987531 111 1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+ +++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 79 ~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 157 (258)
T 2pbp_A 79 LEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRAL 157 (258)
T ss_dssp HHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred HHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHH
Confidence 2222333 567789999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+++++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++.......+.... +.+.+..++ +
T Consensus 158 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s 237 (258)
T 2pbp_A 158 EWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFAS 237 (258)
T ss_dssp HHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999998877777 8999999999999999998765555544443 355666777 6
Q ss_pred cCcHHHHHHhhcCCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~~ 287 (288)
+|..|++.+|+|||+|+|.
T Consensus 238 ~d~~eg~~af~ekr~p~~~ 256 (258)
T 2pbp_A 238 EDQKEGMAAFLEKRKPRFQ 256 (258)
T ss_dssp HHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHccCCCCCC
Confidence 8999999999999999984
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-56 Score=391.02 Aligned_cols=251 Identities=22% Similarity=0.292 Sum_probs=210.8
Q ss_pred CCccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhcc
Q 023017 27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106 (288)
Q Consensus 27 ~~~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~ 106 (288)
..+..+++.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++......
T Consensus 8 ~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~ 87 (265)
T 3qxi_A 8 ELNGDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENV 87 (265)
T ss_dssp -------CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCC
T ss_pred cccCCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchh
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999987642111
Q ss_pred CChHHHHHHHHHHHHH-HHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc
Q 023017 107 GKLEECKDFFRTLYSF-IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~l-~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
.... ..+ +..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 88 --~~~~-------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 157 (265)
T 3qxi_A 88 --VVEG-------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPER 157 (265)
T ss_dssp --EETT-------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHH
T ss_pred --hhhh-------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHH
Confidence 0000 011 223334 99999999999999999999999999999999999999999999999999999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDI 262 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~ 262 (288)
+|.. +++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++.....++...+ +...
T Consensus 158 vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~ 237 (265)
T 3qxi_A 158 IPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKRIITESRGWSLDTRFAQQMKI 237 (265)
T ss_dssp SCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCTTTHHHHHHHH
T ss_pred hCHHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999888887 8999999999999999998876655554443 3556
Q ss_pred HHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 263 VDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 263 ~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
+..++ ++|..|++.+|+|||+|+|.
T Consensus 238 ~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3qxi_A 238 LFPIFTSNDAKEGAIAFAEKRPPRWT 263 (265)
T ss_dssp HHHHHHCHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 66666 78999999999999999984
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=394.55 Aligned_cols=251 Identities=17% Similarity=0.175 Sum_probs=219.9
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.........
T Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--- 84 (265)
T 3swx_A 8 YETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGAS--- 84 (265)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CC---
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhH---
Confidence 56899999999999999999999999999999999999999999999999999999999999999998653211110
Q ss_pred HHHHHHHHHHHHHH-hcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 113 KDFFRTLYSFIYLL-GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 113 ~~~~~~~~~l~~~l-~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.+.....+++.++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 85 -~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 163 (265)
T 3swx_A 85 -LTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNA 163 (265)
T ss_dssp -CCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHH
Confidence 1112223345567 899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++......+...+ +...+..++
T Consensus 164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 243 (265)
T 3swx_A 164 MRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRELFT 243 (265)
T ss_dssp HHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998888777 8999999999999999998765544444443 355666677
Q ss_pred CcCcHHHHHHhhcCCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~~ 287 (288)
++|..|++.+|+|||+|+|.
T Consensus 244 s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3swx_A 244 SEDATLGVQAFLSRTTAEFV 263 (265)
T ss_dssp SHHHHHHHHHHHTTCCCCCC
T ss_pred CHHHHHHHHHHhcCCCCCCC
Confidence 67999999999999999983
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-56 Score=393.15 Aligned_cols=251 Identities=17% Similarity=0.235 Sum_probs=213.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-----CC-CcccccCChhhHHHhhc
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-----SG-RAFCAGGDIVSLYHFMN 105 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g-----~g-~~F~aG~Dl~~~~~~~~ 105 (288)
.++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+||||| .| +.||+|.|++++...
T Consensus 8 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~-- 85 (275)
T 4eml_A 8 HYDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEG-- 85 (275)
T ss_dssp ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred CCceEEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcc--
Confidence 3668999999999999999999999999999999999999999999999999999 88 599999999987531
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc
Q 023017 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
...+........++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 86 -~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~ 164 (275)
T 4eml_A 86 -GYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARI 164 (275)
T ss_dssp ----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHH
T ss_pred -cccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHH
Confidence 1011111111124578888999999999999999999999999999999999999999999999999998889999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDI 262 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~ 262 (288)
+|.. |++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++.... ..... .+.+.
T Consensus 165 vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~ 243 (275)
T 4eml_A 165 VGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIRCLKAAFNADCDG-QAGLQELAGNA 243 (275)
T ss_dssp HCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-chhHHHHHHHH
Confidence 9999 99999999999999999999999999999998888877 899999999999999999876432 22221 22344
Q ss_pred HHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 263 VDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 263 ~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
+..++ ++|..|++.+|+|||+|+|
T Consensus 244 ~~~~~~s~d~~eg~~AF~ekR~p~f 268 (275)
T 4eml_A 244 TLLYYMTEEGSEGKQAFLEKRPPDF 268 (275)
T ss_dssp HHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 55556 7899999999999999998
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-57 Score=398.04 Aligned_cols=251 Identities=20% Similarity=0.289 Sum_probs=220.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.........
T Consensus 5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-- 82 (265)
T 3qxz_A 5 MVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRN-- 82 (265)
T ss_dssp -CCEEEEEEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCS--
T ss_pred ccceEEEEEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHH--
Confidence 567899999999999999999999999999999999999999999999999999999999999999987542111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.++.. ++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 --~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 159 (265)
T 3qxz_A 83 --PDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVA 159 (265)
T ss_dssp --SCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHH
T ss_pred --HHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11122 4567778999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC-CHHHHHHHHHHhhccCCCChhhH---HHHHHHHHH
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD-DPSVIEACLEKYSDLVYPDKNSV---IHRIDIVDK 265 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~-~~~~~~~~k~~l~~~~~~~~~~~---~~~~~~~~~ 265 (288)
++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++.. +|.++..+|+.+++.....++.. ..+...+..
T Consensus 160 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~ 239 (265)
T 3qxz_A 160 AELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHLR 239 (265)
T ss_dssp HHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888777 899999 99999999999987654443333 334566667
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
++ ++|..|++.+|+|||+|+|.
T Consensus 240 ~~~s~d~~egi~Af~ekr~P~f~ 262 (265)
T 3qxz_A 240 LMGSQDAAEGPRAFIDGRPPRWA 262 (265)
T ss_dssp HHTSTHHHHHHHHHHHTSCCCCC
T ss_pred HhCChHHHHHHHHHHcCCCCCCC
Confidence 77 68999999999999999983
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=388.80 Aligned_cols=251 Identities=20% Similarity=0.289 Sum_probs=207.1
Q ss_pred ccCCCCCccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHH
Q 023017 22 HRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLY 101 (288)
Q Consensus 22 ~~~~~~~~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~ 101 (288)
.++|.++.+.++..|.++++++|++||||||+++|++|.+|+.+|.++++.+++| ++|+|||||.|+.||+|.|++...
T Consensus 9 ~~~~~~~~~~~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~ 87 (264)
T 3he2_A 9 MGTLEAQTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA 87 (264)
T ss_dssp -------------CEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT
T ss_pred CcccccccCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch
Confidence 3566777888889999999999999999999999999999999999999999988 999999999999999999998311
Q ss_pred HhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHH
Q 023017 102 HFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFY 181 (288)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 181 (288)
.. ..+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++
T Consensus 88 ------~~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~ 158 (264)
T 3he2_A 88 ------FA---ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRR 158 (264)
T ss_dssp ------TG---GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHH
T ss_pred ------hh---HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHH
Confidence 11 123455677888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH
Q 023017 182 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR 259 (288)
Q Consensus 182 l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~ 259 (288)
|++++|.. |++|+++|++++|+||+++||||+|++ + +.+.++ ++++..+|.+++.+|+.++..... .+....+
T Consensus 159 L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~---~-~~a~~~A~~la~~~p~a~~~~K~~l~~~~~~-~~~~~~e 233 (264)
T 3he2_A 159 LSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT---L-ADAQAWAAEIARLAPLAIQHAKRVLNDDGAI-EEAWPAH 233 (264)
T ss_dssp HHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC---H-HHHHHHHHHHHTSCHHHHHHHHHHHHTSSCS-CCCCHHH
T ss_pred HHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec---H-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCH-HHHHHHH
Confidence 99999999 999999999999999999999999986 3 344555 899999999999999999876321 1222334
Q ss_pred HHHHHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 260 IDIVDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 260 ~~~~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
.+.+..++ ++|..|++.+|+|||+|+|.
T Consensus 234 ~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~ 262 (264)
T 3he2_A 234 KELFDKAWGSQDVIEAQVARMEKRPPKFQ 262 (264)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 45666666 68999999999999999983
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-55 Score=387.09 Aligned_cols=253 Identities=20% Similarity=0.238 Sum_probs=216.1
Q ss_pred CCCcEEEE----eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC
Q 023017 32 LCNQVLVE----GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107 (288)
Q Consensus 32 ~~~~v~~~----~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~ 107 (288)
|...+.++ .+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.......
T Consensus 5 m~~~v~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 84 (267)
T 3oc7_A 5 MDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPS 84 (267)
T ss_dssp CCSSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------
T ss_pred cccccCCCCccceeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCch
Confidence 34578999 89999999999999999999999999999999999999999999999999999999999875211111
Q ss_pred C-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcc
Q 023017 108 K-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186 (288)
Q Consensus 108 ~-~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 186 (288)
. ......+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+ ++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~v 163 (267)
T 3oc7_A 85 SAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KL 163 (267)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TS
T ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-Hh
Confidence 1 111234567778899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHH
Q 023017 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIV 263 (288)
Q Consensus 187 g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~ 263 (288)
|.. +++++++|++++|+||+++||||++ ++++.+.+.++ ++++..+|.++..+|+.+++.....++...+ +...+
T Consensus 164 G~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~ 241 (267)
T 3oc7_A 164 SARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEES 241 (267)
T ss_dssp CHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 999 9999999999999999999999999 67888877777 8999999999999999998765444444333 35566
Q ss_pred HHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 264 DKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 264 ~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
..++ ++|..|++.+|+|||+|+|.
T Consensus 242 ~~~~~s~d~~eg~~af~ekr~p~f~ 266 (267)
T 3oc7_A 242 ARLFVSDEAREGMLAFLEKRSPNWT 266 (267)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCTTC
T ss_pred HHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 6666 78999999999999999984
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-55 Score=386.47 Aligned_cols=251 Identities=17% Similarity=0.196 Sum_probs=221.1
Q ss_pred CCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
++.+.+++ +++|++||||||+ +|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++ +..... ++.+.
T Consensus 9 ~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~-~~~~~ 85 (264)
T 1wz8_A 9 YPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMR-ASHEA 85 (264)
T ss_dssp CTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHH-HCHHH
T ss_pred CCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccc-cchHH
Confidence 45699999 9999999999999 99999999999999999999999999999999999999999999 653211 01122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 165 (264)
T 1wz8_A 86 LLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKA 165 (264)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHH
Confidence 234456677889999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++..... .+.... +.+.+..++
T Consensus 166 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~ 244 (264)
T 1wz8_A 166 KYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRS-FLPHFELSLALEFLGFS 244 (264)
T ss_dssp HHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGG
T ss_pred HHHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998888777 789999999999999999876444 444333 345566666
Q ss_pred CcCcHHHHHHhhcCCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~~ 287 (288)
++|..|++.+|+|||+|+|.
T Consensus 245 s~d~~eg~~af~ekr~p~f~ 264 (264)
T 1wz8_A 245 GKELEEGLKALKEKRPPEFP 264 (264)
T ss_dssp SHHHHHHHHHHHTTSCCCCC
T ss_pred ChHHHHHHHHHHccCCCCCC
Confidence 78999999999999999983
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-55 Score=387.23 Aligned_cols=247 Identities=18% Similarity=0.238 Sum_probs=210.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.| ++|+|||||.|+.||+|.|++++....... ...
T Consensus 6 ~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--~~~ 82 (267)
T 3hp0_A 6 YQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRG--RKQ 82 (267)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTT--CCS
T ss_pred CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccCh--HHH
Confidence 56799999999999999999999999999999999999999986 599999999999999999999986532111 111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. |+
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ 161 (267)
T 3hp0_A 83 ASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAH 161 (267)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHH
Confidence 12334566788889999999999999999999999999999999999999999999999999885 67899999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhh-HHHHHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNS-VIHRIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~-~~~~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+|+|+.+ ..+.++ ++++..+|.+++.+|+.++..... ... ...+.+.+..++ +
T Consensus 162 ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~s 238 (267)
T 3hp0_A 162 YMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKGIAHYKQFMSSLDHQ-VSRAKATALTANQDMFSD 238 (267)
T ss_dssp HHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998654 234455 899999999999999999876432 322 223355666777 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
+|..|++.+|+|||+|+|
T Consensus 239 ~d~~Eg~~AF~ekr~P~~ 256 (267)
T 3hp0_A 239 PQNQMGIIRYVETGQFPW 256 (267)
T ss_dssp TTHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 899999999999999998
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-55 Score=385.96 Aligned_cols=246 Identities=21% Similarity=0.295 Sum_probs=217.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.... ....
T Consensus 5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~ 81 (256)
T 3trr_A 5 MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGE---AVLS 81 (256)
T ss_dssp CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTC---CCEE
T ss_pred CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhcccc---chhh
Confidence 4567999999999999999999999999999999999999999999999999999999999999999886421 1110
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+ .+ ..+ .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 ~~~~-----~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 154 (256)
T 3trr_A 82 ERGL-----GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA 154 (256)
T ss_dssp TTEE-----TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred hhhh-----hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence 0001 11 234 89999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......++...+ +...+..++
T Consensus 155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~ 234 (256)
T 3trr_A 155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFV 234 (256)
T ss_dssp HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999888887 8999999999999999998876666555444 356666777
Q ss_pred CcCcHHHHHHhhcCCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~~ 287 (288)
++|..|++.+|+|||+|+|.
T Consensus 235 s~d~~eg~~af~ekr~p~f~ 254 (256)
T 3trr_A 235 SEDAKEGAKAFAEKRAPVWQ 254 (256)
T ss_dssp SHHHHHHHHHHHTTSCCCCC
T ss_pred CHHHHHHHHHHhcCCCCCCC
Confidence 68999999999999999984
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=381.63 Aligned_cols=248 Identities=25% Similarity=0.283 Sum_probs=217.3
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++ +++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++............ ..
T Consensus 2 i~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~-~~ 79 (253)
T 1uiy_A 2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENY-RH 79 (253)
T ss_dssp EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHH-HH
T ss_pred EEEE-eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHH-HH
Confidence 6788 899999999999999999999999999999999999999999999999999999999987642100111111 11
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. +++++
T Consensus 80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ 158 (253)
T 1uiy_A 80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLL 158 (253)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHH
Confidence 11267788899999999999999999999999999999999999999999999999999999 99999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCc
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDT 271 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 271 (288)
++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++.......+.... +.+.+..++ ++|.
T Consensus 159 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~ 238 (253)
T 1uiy_A 159 LTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDL 238 (253)
T ss_dssp HHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999998888777 8999999999999999998766555554443 355566666 7899
Q ss_pred HHHHHHhhcCCCCCC
Q 023017 272 VEEIIDSLDDVAPSY 286 (288)
Q Consensus 272 ~e~~~~~lekr~p~~ 286 (288)
.|++.+|+|||+|+|
T Consensus 239 ~eg~~af~~kr~p~~ 253 (253)
T 1uiy_A 239 AEGIRAFFEKRPPRF 253 (253)
T ss_dssp HHHHHHHHTTSCCCC
T ss_pred HHHHHHHhCcCCCCC
Confidence 999999999999987
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-55 Score=387.62 Aligned_cols=251 Identities=19% Similarity=0.248 Sum_probs=205.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++ +|||||.|+.||+|.|++++.... ..+...
T Consensus 24 ~~~~i~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~-~~~~~~ 101 (280)
T 2f6q_A 24 GFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIP-PGGVEE 101 (280)
T ss_dssp ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCC-TTHHHH
T ss_pred CCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcC-cchhhH
Confidence 467899999999999999999999999999999999999999999999 999999999999999999875321 111111
Q ss_pred -HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 112 -CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 112 -~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
...+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 181 (280)
T 2f6q_A 102 KAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK 181 (280)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHH
Confidence 222344567788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++.......+... .+.+.+..++
T Consensus 182 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~ 261 (280)
T 2f6q_A 182 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRW 261 (280)
T ss_dssp HHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877777 899999999999999999876433333333 2345566666
Q ss_pred -CcCcHHHHHHhhcCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAP 284 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p 284 (288)
++|..|++.+|+|||+|
T Consensus 262 ~s~d~~eg~~af~ekR~p 279 (280)
T 2f6q_A 262 LSDECTNAVVNFLSRKSK 279 (280)
T ss_dssp TSHHHHC-----------
T ss_pred CCHHHHHHHHHHHccCCC
Confidence 78999999999999998
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-54 Score=382.82 Aligned_cols=243 Identities=19% Similarity=0.247 Sum_probs=215.2
Q ss_pred cCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCCh
Q 023017 30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 30 ~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 109 (288)
..|++.|.++++++|++|+||||++ |++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++... ..
T Consensus 20 ~~m~~~v~~~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~~ 94 (277)
T 4di1_A 20 GSMNEFVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTL----NA 94 (277)
T ss_dssp ---CCSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTC----CH
T ss_pred CCCCceEEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCccccccc----Ch
Confidence 3466789999999999999999998 999999999999999999999999999999999999999999998642 33
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH
Q 023017 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 189 (288)
.....+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 174 (277)
T 4di1_A 95 PEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSS 174 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence 44556667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHH
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKC 266 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~ 266 (288)
|++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++..... ...+..+
T Consensus 175 ~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~ 254 (277)
T 4di1_A 175 RAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRALAAAKAVINDVFELEATERAAAERRRYVEL 254 (277)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777 89999999999999999998776666655443 6677778
Q ss_pred cCcCcHHHHHHhhcCCCCC--C
Q 023017 267 FGLDTVEEIIDSLDDVAPS--Y 286 (288)
Q Consensus 267 ~~~~~~e~~~~~lekr~p~--~ 286 (288)
+.++ |||+|+ |
T Consensus 255 ~~s~---------ekR~P~~~f 267 (277)
T 4di1_A 255 FAAG---------QRGPDGRGP 267 (277)
T ss_dssp TSGG---------GC-------
T ss_pred hcCc---------ccCCCcCcC
Confidence 8666 999999 7
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-55 Score=399.20 Aligned_cols=254 Identities=17% Similarity=0.223 Sum_probs=191.9
Q ss_pred CCcEEEEee--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-------cccccCChhhHHHh
Q 023017 33 CNQVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-------AFCAGGDIVSLYHF 103 (288)
Q Consensus 33 ~~~v~~~~~--~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~-------~F~aG~Dl~~~~~~ 103 (288)
++.|.++++ ++|++||||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.|+ .||+|.|++++...
T Consensus 54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~ 133 (334)
T 3t8b_A 54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS 133 (334)
T ss_dssp CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence 667999987 999999999999999999999999999999999999999999999995 89999999876421
Q ss_pred hc---cCC----hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEe-CceEEecccccccccCC
Q 023017 104 MN---QGK----LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPD 175 (288)
Q Consensus 104 ~~---~~~----~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~ 175 (288)
.. ... .+........+.+++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~ 213 (334)
T 3t8b_A 134 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDG 213 (334)
T ss_dssp --------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSC
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCc
Confidence 00 000 01111112234567888999999999999999999999999999999999 99999999999999999
Q ss_pred CchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCCh
Q 023017 176 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDK 253 (288)
Q Consensus 176 ~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~ 253 (288)
+|++++|++++|.. |++|+++|+.++|+||+++||||+|||++++.+.+.++ ++++..+|.+++.+|+.++.......
T Consensus 214 ~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~~~K~~l~~~~~~~~ 293 (334)
T 3t8b_A 214 GYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDDGLV 293 (334)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCCCC-
T ss_pred ccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcchH
Confidence 99999999999999 99999999999999999999999999999999888887 89999999999999999987654322
Q ss_pred hhHHHHHHHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 254 NSVIHRIDIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.....+.+.+..++ ++|..|++.+|+|||+|+|
T Consensus 294 ~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f 327 (334)
T 3t8b_A 294 GQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDW 327 (334)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 22222234455566 7899999999999999998
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-55 Score=386.96 Aligned_cols=250 Identities=22% Similarity=0.309 Sum_probs=215.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
+++|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| +.||+|.|++++...........
T Consensus 8 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 87 (267)
T 3r9t_A 8 APGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDH 87 (267)
T ss_dssp CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTC
T ss_pred CCcEEEEEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHH
Confidence 45799999999999999999999999999999999999999999999999999999 59999999999864311111100
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+ ....+ ...++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 88 -~~~---~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 162 (267)
T 3r9t_A 88 -PEW---GFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVA 162 (267)
T ss_dssp -GGG---CGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHH
T ss_pred -HhH---HHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHH
Confidence 000 00111 12389999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHH---hhccCCCChhhHHH-HHHHHHH
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEK---YSDLVYPDKNSVIH-RIDIVDK 265 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~---l~~~~~~~~~~~~~-~~~~~~~ 265 (288)
++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+. ++......++...+ +...+..
T Consensus 163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~ 242 (267)
T 3r9t_A 163 MRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRA 242 (267)
T ss_dssp HHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888887 89999999999999999 87665444444443 3566777
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
++ ++|..|++.+|+|||+|+|.
T Consensus 243 ~~~s~d~~eg~~AF~ekR~P~f~ 265 (267)
T 3r9t_A 243 LLKSEDAKEGPRAFAEKREPVWQ 265 (267)
T ss_dssp HTTSSHHHHHHHHHHTTSCCCCC
T ss_pred HhCCHHHHHHHHHHHcCCCCCCC
Confidence 77 68999999999999999983
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=394.35 Aligned_cols=253 Identities=17% Similarity=0.197 Sum_probs=218.7
Q ss_pred CCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCC-
Q 023017 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK- 108 (288)
Q Consensus 31 ~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~- 108 (288)
..++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| +.||+|.|++++........
T Consensus 6 ~~~~~i~~~~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 84 (287)
T 3gkb_A 6 DAYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQEL 84 (287)
T ss_dssp -CCSSEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHH
T ss_pred CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchh
Confidence 35678999999999999999998 7999999999999999999999999999999998 79999999998753210000
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeC-ceEEecccccccccCCCchHHHHhhcch
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
......+...+++++..+.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|++++|
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG 164 (287)
T 3gkb_A 85 AASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVG 164 (287)
T ss_dssp HHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhC
Confidence 000011223456788899999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK 265 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~ 265 (288)
.. |++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++... ..+....+...+..
T Consensus 165 ~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~--~~~~l~~e~~~~~~ 242 (287)
T 3gkb_A 165 RNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVIEAAKRSLPADD--LKEGLLGENDAWAA 242 (287)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSCCCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--HHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999998888877 8999999999999999998742 22333444566667
Q ss_pred Hc-CcCcHHHHHHhhcCCC--CCC
Q 023017 266 CF-GLDTVEEIIDSLDDVA--PSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~--p~~ 286 (288)
++ ++|..|++.+|+|||+ |+|
T Consensus 243 ~~~s~d~~eg~~AF~ekr~~~P~f 266 (287)
T 3gkb_A 243 TFSLPAAQQLISGGLKDGAQTPAG 266 (287)
T ss_dssp HHTSHHHHHHHHHHHHTTTTSHHH
T ss_pred HhCCHHHHHHHHHHHhcCCCCCch
Confidence 77 6899999999999988 766
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=382.12 Aligned_cols=250 Identities=22% Similarity=0.332 Sum_probs=218.6
Q ss_pred CCCcEEEEe---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCC
Q 023017 32 LCNQVLVEG---KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 32 ~~~~v~~~~---~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 108 (288)
.++.+.++. .++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++... .
T Consensus 2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~ 77 (260)
T 1mj3_A 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----T 77 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----C
T ss_pred CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcc----c
Confidence 355688887 889999999999999999999999999999999999999999999999999999999986421 1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
.. ..+...+...+.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 78 ~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 155 (260)
T 1mj3_A 78 FQ--DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK 155 (260)
T ss_dssp HH--HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred ch--HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 11 1122222334567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~ 265 (288)
. +++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++......+.... +.+.+..
T Consensus 156 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~ 235 (260)
T 1mj3_A 156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYS 235 (260)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 8 99999999999999999999999999999998877777 8999999999999999998876655555443 3555666
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
++ ++|..|++.+|+|||+|+|.
T Consensus 236 ~~~s~d~~egi~af~~kr~p~~~ 258 (260)
T 1mj3_A 236 TFATDDRREGMSAFVEKRKANFK 258 (260)
T ss_dssp GGGSHHHHHHHHHHHTTSCCCCC
T ss_pred HhcCHHHHHHHHHHHcCCCCCCC
Confidence 66 78999999999999999984
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-53 Score=391.29 Aligned_cols=256 Identities=38% Similarity=0.650 Sum_probs=221.3
Q ss_pred CCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCCh
Q 023017 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 31 ~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 109 (288)
+..+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| +.||+|+|++++........
T Consensus 3 ~~~~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~- 81 (363)
T 3bpt_A 3 DAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQ- 81 (363)
T ss_dssp CCCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSC-
T ss_pred CCCcceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhccccc-
Confidence 3455799999999999999999999999999999999999999999999999999998 89999999998764321111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH
Q 023017 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 189 (288)
.....++...++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~ 161 (363)
T 3bpt_A 82 KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL 161 (363)
T ss_dssp CCHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHHH
Confidence 11233445556788899999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHH---------------------------------------------
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIE--------------------------------------------- 224 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~--------------------------------------------- 224 (288)
+++|++||++++|+||+++||||+|+|++++.+.+
T Consensus 162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 241 (363)
T 3bpt_A 162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSC 241 (363)
T ss_dssp HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999998875421
Q ss_pred ------H---------------HH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhh-
Q 023017 225 ------E---------------EL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSL- 279 (288)
Q Consensus 225 ------~---------------~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~l- 279 (288)
. ++ ++++..+|.+++.+|+.+++.....+...+. +...+..++ ++|..|++.+|+
T Consensus 242 f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~ 321 (363)
T 3bpt_A 242 FSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLI 321 (363)
T ss_dssp TTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTT
T ss_pred hCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheee
Confidence 1 24 6899999999999999998876666655544 355566666 789999999999
Q ss_pred cC-CCCCCC
Q 023017 280 DD-VAPSYA 287 (288)
Q Consensus 280 ek-r~p~~~ 287 (288)
+| |+|+|.
T Consensus 322 eK~r~P~~~ 330 (363)
T 3bpt_A 322 DKDQSPKWK 330 (363)
T ss_dssp SCCCCCCCS
T ss_pred CCCCCCCCC
Confidence 88 999984
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=401.22 Aligned_cols=259 Identities=29% Similarity=0.464 Sum_probs=227.3
Q ss_pred cCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccC-
Q 023017 30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG- 107 (288)
Q Consensus 30 ~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~- 107 (288)
+.+++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| +.||+|+|++++.......
T Consensus 38 ~v~~~~v~~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~ 117 (407)
T 3ju1_A 38 NVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAK 117 (407)
T ss_dssp SEEEEEEECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHT
T ss_pred ccccceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccc
Confidence 34567899999999999999999999999999999999999999999999999999999 8999999999986532111
Q ss_pred --ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc
Q 023017 108 --KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 108 --~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
.......++...++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl 197 (407)
T 3ju1_A 118 GQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRM 197 (407)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhh
Confidence 224455677777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhH---H----------------HHH--------------------
Q 023017 186 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPL---I----------------EEE-------------------- 226 (288)
Q Consensus 186 ~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~---~----------------~~~-------------------- 226 (288)
+|..|++|++||++++|+||+++||||+|+|++++.+ . +..
T Consensus 198 ~g~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~ 277 (407)
T 3ju1_A 198 PGKMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAE 277 (407)
T ss_dssp STTHHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHH
T ss_pred hHHHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHH
Confidence 9944999999999999999999999999999988766 2 111
Q ss_pred ---------------------------------HHHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcCc
Q 023017 227 ---------------------------------LGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLDT 271 (288)
Q Consensus 227 ---------------------------------~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~ 271 (288)
+++++..+|.+++.+|+.+++.....++..++. ......++ ++|.
T Consensus 278 ~~~~I~~~f~~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~ 357 (407)
T 3ju1_A 278 SQEMIDRLMAGSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDF 357 (407)
T ss_dssp THHHHHHHTCSCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhcCCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 257889999999999999998877776665544 66677777 7899
Q ss_pred HHHHHHhh-cC-CCCCCCC
Q 023017 272 VEEIIDSL-DD-VAPSYAY 288 (288)
Q Consensus 272 ~e~~~~~l-ek-r~p~~~~ 288 (288)
.||+++|+ +| |+|+|.+
T Consensus 358 ~EGvrAflidKdr~P~w~~ 376 (407)
T 3ju1_A 358 CEGVRALLIDKDKQPKWQF 376 (407)
T ss_dssp HHHHHHHTTSCCCCCCCSS
T ss_pred HHHHHHHHhcCCcCCCCCC
Confidence 99999998 87 9999853
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-54 Score=384.40 Aligned_cols=252 Identities=18% Similarity=0.243 Sum_probs=213.5
Q ss_pred CCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccccCChhhHHHhhccCCh
Q 023017 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 31 ~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~-~F~aG~Dl~~~~~~~~~~~~ 109 (288)
..++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+ .||+|.|++++... .....
T Consensus 10 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~-~~~~~ 88 (273)
T 2uzf_A 10 REYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHG-GYVGE 88 (273)
T ss_dssp BCCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------CC
T ss_pred CCCceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhcc-ccchh
Confidence 34667999999999999999999999999999999999999999999999999999998 99999999987431 00000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH
Q 023017 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 189 (288)
.... ...+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 89 ~~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 166 (273)
T 2uzf_A 89 DQIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK 166 (273)
T ss_dssp SSSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHH
T ss_pred hhHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHH
Confidence 0000 00134567788899999999999999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHH-HHHHH
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRI-DIVDK 265 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~-~~~~~ 265 (288)
+++++++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++.. ....... .+. ..+..
T Consensus 167 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~--~~~~~~l~~e~~~~~~~ 244 (273)
T 2uzf_A 167 KAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAMNAD--TDGLAGLQQMAGDATLL 244 (273)
T ss_dssp HHHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777 899999999999999999832 2222322 234 55666
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
++ ++|..|++.+|+|||+|+|.
T Consensus 245 ~~~s~d~~egi~af~ekr~p~f~ 267 (273)
T 2uzf_A 245 YYTTDEAKEGRDAFKEKRDPDFD 267 (273)
T ss_dssp HHTSHHHHHHHHHHHTTSCCCCS
T ss_pred HhcChHHHHHHHHHHhcCCCCCC
Confidence 66 68999999999999999984
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=383.79 Aligned_cols=249 Identities=17% Similarity=0.190 Sum_probs=216.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CC-CcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g-~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
++.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+ +++||||| .| +.||+|.|++++.... ...
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~-~~~-- 78 (261)
T 1ef8_A 3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGG-RDP-- 78 (261)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC------CT--
T ss_pred cceEEEEEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccC-chh--
Confidence 567999999999999999999999999999999999999999999 99999999 99 9999999999875321 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 79 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 156 (261)
T 1ef8_A 79 --LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI 156 (261)
T ss_dssp --TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHH
Confidence 11122356788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhH-HHHHHHHH--H
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSV-IHRIDIVD--K 265 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~-~~~~~~~~--~ 265 (288)
+++++++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++.......+.. ..+.+.+. .
T Consensus 157 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 236 (261)
T 1ef8_A 157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRA 236 (261)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999998888877777 89999999999999999986543333333 33345555 5
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
++ ++|..|++.+|+|||+|+|.
T Consensus 237 ~~~s~d~~eg~~af~ekr~p~~~ 259 (261)
T 1ef8_A 237 VYDSEDYQEGMNAFLEKRKPNFV 259 (261)
T ss_dssp HHTSHHHHHHHHHHHTTSCCCCC
T ss_pred hhcCHHHHHHHHHHHccCCCCCC
Confidence 66 78999999999999999983
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-54 Score=380.51 Aligned_cols=250 Identities=19% Similarity=0.278 Sum_probs=218.2
Q ss_pred CcEEEEe----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCC
Q 023017 34 NQVLVEG----KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 34 ~~v~~~~----~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 108 (288)
+.+.+++ +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| +.||+|.|++++... .
T Consensus 8 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~ 83 (272)
T 1hzd_A 8 DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM----S 83 (272)
T ss_dssp CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS----C
T ss_pred CcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc----C
Confidence 3455553 689999999999999999999999999999999999999999999998 799999999987531 2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
......+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 163 (272)
T 1hzd_A 84 SSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGM 163 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCH
Confidence 23334455667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhH----HHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPL----IEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RID 261 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~----~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~ 261 (288)
. +++|+++|++++|+||+++||||+++|++++.+ .+.++ ++++..+|.+++.+|+.++......+..... +..
T Consensus 164 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~ 243 (272)
T 1hzd_A 164 SLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEA 243 (272)
T ss_dssp HHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8 999999999999999999999999999988643 44555 7889999999999999998765555554443 355
Q ss_pred HHHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 262 IVDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 262 ~~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
.+..++ ++|..|++.+|+|||+|+|.
T Consensus 244 ~~~~~~~s~d~~egi~af~ekr~p~~~ 270 (272)
T 1hzd_A 244 CYAQTIPTKDRLEGLLAFKEKRPPRYK 270 (272)
T ss_dssp HHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 566666 68999999999999999983
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-54 Score=375.97 Aligned_cols=244 Identities=16% Similarity=0.201 Sum_probs=197.7
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCcccccCChhhHHHhhccCChHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+||||| .|+.||+|.|++++... ...+....
T Consensus 2 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~---~~~~~~~~ 78 (250)
T 2a7k_A 2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQL---SRSEDIEE 78 (250)
T ss_dssp EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHH
T ss_pred eEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhc---CchhhHHH
Confidence 678899999999999999999999999999999999999999999999999 99999999999987532 11222234
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.. ++++
T Consensus 79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l 157 (250)
T 2a7k_A 79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEI 157 (250)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHH
Confidence 55567788999999999999999999999999999999999999999999999999999999999 999999998 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~ 270 (288)
+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +.+.+..++ ++|
T Consensus 158 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d 237 (250)
T 2a7k_A 158 IYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARD 237 (250)
T ss_dssp HHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999998888877777 8999999999999999998654333333222 244455566 689
Q ss_pred cHHHHHHhhcCCC
Q 023017 271 TVEEIIDSLDDVA 283 (288)
Q Consensus 271 ~~e~~~~~lekr~ 283 (288)
..|++.+|+|||+
T Consensus 238 ~~eg~~af~ekr~ 250 (250)
T 2a7k_A 238 AQGHFKNVLGKKY 250 (250)
T ss_dssp -------------
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999984
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=381.82 Aligned_cols=241 Identities=21% Similarity=0.317 Sum_probs=193.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++...
T Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~--------- 78 (256)
T 3pe8_A 8 SPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT--------- 78 (256)
T ss_dssp CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC------------
T ss_pred CCcEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh---------
Confidence 45799999999999999999999999999999999999999999999999999999999999999987531
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+..+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 79 ----~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ 154 (256)
T 3pe8_A 79 ----TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLAR 154 (256)
T ss_dssp ----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHH
Confidence 1122344668899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHH---
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKC--- 266 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~--- 266 (288)
+|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++.......+...+ +...+...
T Consensus 155 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~ 234 (256)
T 3pe8_A 155 RMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQWMRS 234 (256)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998888887 8999999999999999998765444443333 23333322
Q ss_pred c-CcCcHHHHHHhhcCCCCCC
Q 023017 267 F-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 267 ~-~~~~~e~~~~~lekr~p~~ 286 (288)
. ++|..|++.+|+|||+|+|
T Consensus 235 ~~~~d~~e~~~aflek~k~~~ 255 (256)
T 3pe8_A 235 TSGDDIAASRASVIERGRSQV 255 (256)
T ss_dssp C--------------------
T ss_pred ccchHHHHHHHHHHhccCccC
Confidence 3 4677999999999999987
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-53 Score=371.89 Aligned_cols=238 Identities=15% Similarity=0.155 Sum_probs=206.7
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
.|.++++++|++||||||+++|++|.+|+.+|.++++.+++ +++|+|||||.|+.||+|.|++++... .......
T Consensus 8 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~~~~ 82 (254)
T 3isa_A 8 PLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQ----SEGDLLL 82 (254)
T ss_dssp SEEEEECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTS----CHHHHHH
T ss_pred eEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhcc----CchhHHH
Confidence 49999999999999999999999999999999999999987 589999999999999999999987532 2223333
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
.+..+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++++|++++|.. |+++
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l 159 (254)
T 3isa_A 83 RMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSI 159 (254)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHH
Confidence 445667889999999999999999999999999999999999999999999999999998 378999999999 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc-CcCc
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF-GLDT 271 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 271 (288)
+++|++++|+||+++||||+|+|++++++.+.++ ++++..++.+++.+|+.+... .. ..+.+.+..++ +++.
T Consensus 160 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~---~~---~~e~~~~~~~~~s~d~ 233 (254)
T 3isa_A 160 LGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDD---HD---DADLAALARSAAQPGF 233 (254)
T ss_dssp HTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHHHHHHHHSCC---CH---HHHHHHHHHHHHSTTH
T ss_pred HHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---hH---HHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999998888777 899999999999999998532 12 22334455555 7899
Q ss_pred HHHHHHhhcCCCCCC
Q 023017 272 VEEIIDSLDDVAPSY 286 (288)
Q Consensus 272 ~e~~~~~lekr~p~~ 286 (288)
.|++.+|+|||+|++
T Consensus 234 ~egi~af~ekr~p~~ 248 (254)
T 3isa_A 234 KARIRDYLAQPAAEG 248 (254)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHhcCCCCC
Confidence 999999999999997
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-54 Score=380.59 Aligned_cols=244 Identities=18% Similarity=0.178 Sum_probs=194.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++........
T Consensus 10 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--- 86 (258)
T 3lao_A 10 GPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASG--- 86 (258)
T ss_dssp SSCCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTB---
T ss_pred CCCeEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhh---
Confidence 46689999999999999999999999999999999999999999999999999999999999999999865321111
Q ss_pred HHHHHHHHHHHHHHH-hcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 112 CKDFFRTLYSFIYLL-GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l-~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
..+...+++++.++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 87 -~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 165 (258)
T 3lao_A 87 -FRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTD 165 (258)
T ss_dssp -CCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHH
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 11122233456677 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++.....++...+ +.+.+..++
T Consensus 166 A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~ 245 (258)
T 3lao_A 166 AMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALI 245 (258)
T ss_dssp HHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888777 8999999999999999998876655444443 355666666
Q ss_pred -CcCcHHHHHHhh
Q 023017 268 -GLDTVEEIIDSL 279 (288)
Q Consensus 268 -~~~~~e~~~~~l 279 (288)
++|..|++.+|+
T Consensus 246 ~s~d~~eg~~AF~ 258 (258)
T 3lao_A 246 GSEDVREGVLAMV 258 (258)
T ss_dssp -------------
T ss_pred CCHHHHHHHHhhC
Confidence 679999999885
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=375.46 Aligned_cols=247 Identities=14% Similarity=0.120 Sum_probs=209.1
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCcccccCChhhHHHhhccCChHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.+.++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|. |+.||+|.|++++.. .+.+...
T Consensus 6 ~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~~~~~~~ 80 (260)
T 1sg4_A 6 LVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPAHYA 80 (260)
T ss_dssp EEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHHHHH
T ss_pred EEEEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhc----cCHHHHH
Confidence 4667778999999999996 799999999999999999999999999999999 699999999998742 1233344
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEe--CceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.+...+++++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++++|.. +
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 160 (260)
T 1sg4_A 81 GYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA 160 (260)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHH
Confidence 555667888999999999999999999999999999999999999 8999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhH-HHHHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSV-IHRIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~-~~~~~~~~~~~- 267 (288)
++++++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++.......+.. ..+.+.+..++
T Consensus 161 ~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 240 (260)
T 1sg4_A 161 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS 240 (260)
T ss_dssp HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998877777 89999999999999999986543222222 23345556666
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
++|..|++.+|+|||+|+.
T Consensus 241 s~d~~eg~~af~ekr~~~~ 259 (260)
T 1sg4_A 241 KDSIQKSLQMYLERLKEEK 259 (260)
T ss_dssp SHHHHHHHTC---------
T ss_pred CHHHHHHHHHHHHhhcccC
Confidence 7899999999999999973
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=370.37 Aligned_cols=246 Identities=19% Similarity=0.222 Sum_probs=205.0
Q ss_pred CcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhh--ccCChH
Q 023017 34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM--NQGKLE 110 (288)
Q Consensus 34 ~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~--~~~~~~ 110 (288)
+.+.++. +++|++|+||||++ |++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.... ...+..
T Consensus 6 ~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (263)
T 3l3s_A 6 DGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRA 84 (263)
T ss_dssp --CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHH
T ss_pred cceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHH
Confidence 3566665 89999999999999 9999999999999999999999999999999999999999999875421 122344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|++++|..
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~-~g~~~~l~r~vG~~~ 163 (263)
T 3l3s_A 85 FVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFC-TTPAVAVSRVIGRRA 163 (263)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCC-HHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCC-ccHHHHHHHHcCHHH
Confidence 5566777888999999999999999999999999999999999999999999999999999994 67899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......++...+. ...+..++
T Consensus 164 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~ 243 (263)
T 3l3s_A 164 VTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLRRGLETLNRHLELPLEQAYALATPVMVEHF 243 (263)
T ss_dssp HHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888777 89999999999999999998876666655543 56677777
Q ss_pred -CcCcHHHHHHhhcC
Q 023017 268 -GLDTVEEIIDSLDD 281 (288)
Q Consensus 268 -~~~~~e~~~~~lek 281 (288)
++|..|++.+|.+.
T Consensus 244 ~s~d~~Eg~~Af~~~ 258 (263)
T 3l3s_A 244 MDPGRRHLDWIDEGH 258 (263)
T ss_dssp C--------------
T ss_pred CCHHHHHHHHHhhcc
Confidence 68899999999764
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=372.56 Aligned_cols=244 Identities=15% Similarity=0.162 Sum_probs=214.9
Q ss_pred CCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccccCChhhHHHhhccCCh
Q 023017 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 31 ~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~-~F~aG~Dl~~~~~~~~~~~~ 109 (288)
..++.|.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|+ +||+|.|++++.... .
T Consensus 5 ~~~~~v~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~----~ 79 (289)
T 3h0u_A 5 ASYETIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYT----A 79 (289)
T ss_dssp CCCSSEEEEEETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHH----H
T ss_pred CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcC----c
Confidence 34678999999999999999998 89999999999999999999999999999999995 556777999886421 1
Q ss_pred HHHH---HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhc
Q 023017 110 EECK---DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 110 ~~~~---~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
.... .+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~ 159 (289)
T 3h0u_A 80 EAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL 159 (289)
T ss_dssp HHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHH
Confidence 1111 23345677889999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDI 262 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~ 262 (288)
+|.. |++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.++..+|+.++.... .++... .+...
T Consensus 160 vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~~-~l~~~l~~e~~~ 238 (289)
T 3h0u_A 160 LGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALIAAKSAINAISL-PAPAEVRADAAL 238 (289)
T ss_dssp HCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHS-CCHHHHHHHHHH
T ss_pred hCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-cHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999998888777 89999999999999999987765 444433 34566
Q ss_pred HHHHc-CcCcHHHHHHhhc
Q 023017 263 VDKCF-GLDTVEEIIDSLD 280 (288)
Q Consensus 263 ~~~~~-~~~~~e~~~~~le 280 (288)
+..++ ++|..|++.+|+|
T Consensus 239 ~~~~~~s~d~~egi~AFle 257 (289)
T 3h0u_A 239 FQQLVRGEKVQQRTAELFK 257 (289)
T ss_dssp HHHHTTSHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHhC
Confidence 77777 6899999999999
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-52 Score=370.42 Aligned_cols=217 Identities=16% Similarity=0.103 Sum_probs=190.9
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCC---h
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK---L 109 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~---~ 109 (288)
++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++........ .
T Consensus 8 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~ 87 (280)
T 1pjh_A 8 NEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP 87 (280)
T ss_dssp BTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred CCceEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchh
Confidence 4679999999999999999999999999999999999999999999999999999999999999998753211110 0
Q ss_pred H----HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEe-CceEEecccccccccCCCchHHHHhh
Q 023017 110 E----ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSH 184 (288)
Q Consensus 110 ~----~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~ 184 (288)
. ....++...++++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r 167 (280)
T 1pjh_A 88 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPL 167 (280)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHH
Confidence 1 111233344678889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cchHH-HHHHHhcCCCCCHHHHHHcCccceecCCC-----ChhHHH-HHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSE-----KLPLIE-EEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 185 ~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-----~l~~~~-~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
++|.. |++|+++|++++|+||+++||||+|+|++ ++.+.+ .++ ++++..+|.++..+|+.++...
T Consensus 168 ~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K~~l~~~~ 240 (280)
T 1pjh_A 168 KFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNH 240 (280)
T ss_dssp HHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTT
T ss_pred HhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhH
Confidence 99998 99999999999999999999999999986 576655 355 8999999999999999998754
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-52 Score=379.00 Aligned_cols=255 Identities=18% Similarity=0.200 Sum_probs=208.0
Q ss_pred ccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCC
Q 023017 29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 29 ~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 108 (288)
+...+++|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++........
T Consensus 30 ~~~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~ 109 (333)
T 3njd_A 30 DFDNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAG 109 (333)
T ss_dssp CTTSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC------------
T ss_pred CCCCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccc
Confidence 44567889999999999999999999999999999999999999999999999999999999999999998754211100
Q ss_pred h--------------------------HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceE
Q 023017 109 L--------------------------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 162 (288)
Q Consensus 109 ~--------------------------~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~ 162 (288)
. .....+...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~ 189 (333)
T 3njd_A 110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK 189 (333)
T ss_dssp ---CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence 0 01234556677788899999999999999999999999999999999999999
Q ss_pred EecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHH
Q 023017 163 FATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEA 240 (288)
Q Consensus 163 f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~ 240 (288)
|++||+++|++|++| +|++++|.. |++|+++|++|+|+||+++||||+|+|++++.+.+.++ ++++..++.+++.
T Consensus 190 f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~~ 266 (333)
T 3njd_A 190 IGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLIM 266 (333)
T ss_dssp EECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHHH
T ss_pred eechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999876 478999999 99999999999999999999999999999999888888 8999999999999
Q ss_pred HHHHhhccCCCC-hhhHHHHHHHHH---------HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 241 CLEKYSDLVYPD-KNSVIHRIDIVD---------KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 241 ~k~~l~~~~~~~-~~~~~~~~~~~~---------~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
+|+.++...... ..........+. ..| .....+++.+|+|||+|.|
T Consensus 267 ~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~g~~a~~ekR~~~f 323 (333)
T 3njd_A 267 AKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVATAREHGFREAVRRRDEPM 323 (333)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHhcChHHHHHHHHhhhHHHHHHHHhcCCCC
Confidence 999998765332 221111111111 111 2233688999999999998
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=362.05 Aligned_cols=242 Identities=15% Similarity=0.089 Sum_probs=210.3
Q ss_pred CccCCCCcEEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhcc
Q 023017 28 VTDDLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106 (288)
Q Consensus 28 ~~~~~~~~v~~~~~~-~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~ 106 (288)
.....++.|.+++++ +|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++...
T Consensus 17 ~~~~~~~~i~~~~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~--- 93 (263)
T 2j5g_A 17 EYFTKYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDV--- 93 (263)
T ss_dssp GGGGSCTTEEEEECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCT---
T ss_pred cccCCCCeEEEEEcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhcc---
Confidence 344456789999999 9999999999999999999999999999999999999999999999999999999987431
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEec-ccccccccCCCchHHHHhhc
Q 023017 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-PETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~~~ 185 (288)
.+.+....+...+++++.++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~ 172 (263)
T 2j5g_A 94 TNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLA 172 (263)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHH
Confidence 122223344555678888999999999999999999 6999999999999999999999 99999999999999999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~ 263 (288)
+|.. +++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......++....
T Consensus 173 vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~----- 247 (263)
T 2j5g_A 173 LGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLRYTRVALTQRLKRLVNEGIG----- 247 (263)
T ss_dssp HHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred cCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHH-----
Confidence 9998 99999999999999999999999999999998877777 8999999999999999997653222221111
Q ss_pred HHHcCcCcHHHHHHhhcCC
Q 023017 264 DKCFGLDTVEEIIDSLDDV 282 (288)
Q Consensus 264 ~~~~~~~~~e~~~~~lekr 282 (288)
.....|++.+|++||
T Consensus 248 ----~e~~~eg~~af~~~~ 262 (263)
T 2j5g_A 248 ----YGLALEGITATDLRN 262 (263)
T ss_dssp ----HHHHHHHHHHHHTTC
T ss_pred ----HHHHHhhHHHHHhcc
Confidence 134569999999987
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-50 Score=359.11 Aligned_cols=247 Identities=13% Similarity=0.161 Sum_probs=209.0
Q ss_pred CCCcEEE--EeeCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcCCCcccccCChhhH
Q 023017 32 LCNQVLV--EGKANSRMAILNRPSA----LNALNTNMGAKLNKLFKAWEN-----DPNIGFVSMKGSGRAFCAGGDIVSL 100 (288)
Q Consensus 32 ~~~~v~~--~~~~~v~~i~ln~p~~----~N~l~~~~~~~l~~~l~~~~~-----d~~v~vvvl~g~g~~F~aG~Dl~~~ 100 (288)
.|+++.+ +++++|++||||+|+| +|++|.+|+.+|.++++.++. |+++|+|||+|.|+.||+|.|++++
T Consensus 28 ~y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~ 107 (305)
T 3m6n_A 28 IGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALF 107 (305)
T ss_dssp -CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHH
T ss_pred CCceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHH
Confidence 4666655 6689999999999998 559999999999999999987 5899999999999999999999998
Q ss_pred HHhhccCChHHHHHHHHHHHHHHHHH---hcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCc
Q 023017 101 YHFMNQGKLEECKDFFRTLYSFIYLL---GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAG 177 (288)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g 177 (288)
.......+......+...+.+.+..+ ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g 187 (305)
T 3m6n_A 108 CQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG 187 (305)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred HhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence 65432233333444555555555554 468999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhh
Q 023017 178 ASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNS 255 (288)
Q Consensus 178 ~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~ 255 (288)
++++|++++|.. +++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++. +|.++..+|+.++......++.
T Consensus 188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~a~~~~K~~l~~~~~~~l~~ 266 (305)
T 3m6n_A 188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPHAWAAMQQVREMTTAVPLEE 266 (305)
T ss_dssp HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhhcCCHHH
Confidence 999999999999 99999999999999999999999999999999888888 67775 8999999999999887777666
Q ss_pred HHHH-HHHHHHHc-CcCcHHHHHHhh
Q 023017 256 VIHR-IDIVDKCF-GLDTVEEIIDSL 279 (288)
Q Consensus 256 ~~~~-~~~~~~~~-~~~~~e~~~~~l 279 (288)
..+. ...+..++ ++|....+++++
T Consensus 267 ~l~~e~~~~~~~~~s~d~~~~~m~~l 292 (305)
T 3m6n_A 267 MMRITEIWVDTAMQLGEKSLRTMDRL 292 (305)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 5544 66778888 456666666654
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=359.16 Aligned_cols=235 Identities=19% Similarity=0.240 Sum_probs=204.5
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
...++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.... ....
T Consensus 4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~~----- 77 (243)
T 2q35_A 4 VQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKT-RGEV----- 77 (243)
T ss_dssp EEEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHH-TTCC-----
T ss_pred eEEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhcc-chhh-----
Confidence 3567889999999999999999999999999999999999999999999999999999999999875421 1110
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
..++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++++
T Consensus 78 ---~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 154 (243)
T 2q35_A 78 ---EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEM 154 (243)
T ss_dssp ---CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHH
T ss_pred ---HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHH
Confidence 124567788999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~-~~~ 270 (288)
+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.+++......+... .+...+..++ ++|
T Consensus 155 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d 234 (243)
T 2q35_A 155 IYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQPE 234 (243)
T ss_dssp HHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999988877777 899999999999999999875433333333 2345566666 677
Q ss_pred cHHHHHHh
Q 023017 271 TVEEIIDS 278 (288)
Q Consensus 271 ~~e~~~~~ 278 (288)
..|++.++
T Consensus 235 ~~eg~~a~ 242 (243)
T 2q35_A 235 IASRIQQE 242 (243)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhc
Confidence 88887765
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=352.12 Aligned_cols=213 Identities=21% Similarity=0.183 Sum_probs=194.1
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.|.++++++|++||||||+ .|++|.+|+.+|.++++.+++| ++|+|||||.|+.||+|.|++++... +...
T Consensus 3 M~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~ 76 (233)
T 3r6h_A 3 MSGPVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSG----EAKP 76 (233)
T ss_dssp --CCEEEEEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC-------CHH
T ss_pred CCCceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhcc----ChHH
Confidence 4567999999999999999984 7999999999999999999987 58999999999999999999998642 2344
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a 156 (233)
T 3r6h_A 77 AIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAY 156 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 556677788899999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY 250 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~ 250 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.+++...
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 217 (233)
T 3r6h_A 157 QQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHNATKLRARAEAL 217 (233)
T ss_dssp HHHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHH
T ss_pred HHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888887 89999999999999999986643
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=347.77 Aligned_cols=210 Identities=14% Similarity=0.103 Sum_probs=193.1
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.|.++++++|++||||||+ .|++|.+|+.+|.++++.++.| +++|||||.|+.||+|.|++++.. .....
T Consensus 5 ~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~-----~~~~~ 76 (232)
T 3ot6_A 5 SDLVSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTS-----SAEAA 76 (232)
T ss_dssp HHHEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHH-----CHHHH
T ss_pred ccceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhh-----ChHHH
Confidence 347999999999999999985 7999999999999999999977 489999999999999999999864 23344
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.++....++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|+++++++++|.. +
T Consensus 77 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a 156 (232)
T 3ot6_A 77 INLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAF 156 (232)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHH
Confidence 566777888999999999999999999999999999999999999997 89999999999998888889999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY 250 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~ 250 (288)
++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++....
T Consensus 157 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 217 (232)
T 3ot6_A 157 NRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHKKTKLKVRKGLL 217 (232)
T ss_dssp HHHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999888888 89999999999999999987643
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-50 Score=355.30 Aligned_cols=248 Identities=16% Similarity=0.197 Sum_probs=202.3
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH-
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE- 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~- 110 (288)
.++.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++..........
T Consensus 18 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~ 97 (279)
T 3t3w_A 18 TEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEF 97 (279)
T ss_dssp -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHH
T ss_pred cCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999876432111111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
........+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+.++..+ ++++|..
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG~~~ 175 (279)
T 3t3w_A 98 IYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELGPRK 175 (279)
T ss_dssp HHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcCHHH
Confidence 12223345567888999999999999999999999999999999999999999999999999 44444443 8999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 268 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~ 268 (288)
+++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++..... .....+...+.
T Consensus 176 A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-----~~~~~~~~~~~ 250 (279)
T 3t3w_A 176 AKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALRQAKRAVNQTLDVQ-----GFYAAIQSVFD 250 (279)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT-----THHHHHHHHHH
T ss_pred HHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----cHHHHHHHHhh
Confidence 99999999999999999999999999999998888888 8999999999999999998653210 11233444554
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
.+...+..++.+.+.|.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (279)
T 3t3w_A 251 IHQTGHGNAMSVSGWPVL 268 (279)
T ss_dssp HHHHHHHHHHHHTSSCC-
T ss_pred HHHHHHHHHHHhcCCccc
Confidence 555555557777777754
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-50 Score=351.41 Aligned_cols=212 Identities=17% Similarity=0.227 Sum_probs=193.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|.|++++.. .+.+..
T Consensus 15 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~ 90 (257)
T 1szo_A 15 YENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL----GTPHDW 90 (257)
T ss_dssp CTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC----SSHHHH
T ss_pred CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhc----CCHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999998642 122333
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEec-ccccccccCCCchHHHHhhcchHH-H
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-PETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+...+++++.++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|++++|.. +
T Consensus 91 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A 169 (257)
T 1szo_A 91 DEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRG 169 (257)
T ss_dssp HHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence 344555678888999999999999999999 5999999999999999999999 999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.+++..
T Consensus 170 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 229 (257)
T 1szo_A 170 RYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTRQL 229 (257)
T ss_dssp HHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999998888877777 8999999999999999997653
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-49 Score=367.53 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=197.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--------C-CcccccCChhhHHHh
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--------G-RAFCAGGDIVSLYHF 103 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~--------g-~~F~aG~Dl~~~~~~ 103 (288)
++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||. | +.||+|.|++++...
T Consensus 166 ~~~v~~e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~ 245 (440)
T 2np9_A 166 MEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG 245 (440)
T ss_dssp CSSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred CceEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence 4579999999999999999999999999999999999999999999999999994 6 799999999987542
Q ss_pred hccCChHHHHHHHHHHHHHHHHH------------hcCCCcEEEEEcCcccccccccccccCeEEEeCceEEeccccccc
Q 023017 104 MNQGKLEECKDFFRTLYSFIYLL------------GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIG 171 (288)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~l------------~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G 171 (288)
...............++.++..+ ..+||||||+|||+|+|||++|+++||||||+++++|++||+++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lG 325 (440)
T 2np9_A 246 GISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEG 325 (440)
T ss_dssp CCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTC
T ss_pred CcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccC
Confidence 10100100111112234444443 479999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 172 FHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 172 l~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
++|++| +++|++++|.. +++|+++|+.|+|+||+++||||+|||++++++.+..+ ++++ +.++..+|+.++...
T Consensus 326 l~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la---~~Av~~~K~~l~~~~ 401 (440)
T 2np9_A 326 IIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLD---GDAVLANRRMLNLAD 401 (440)
T ss_dssp CCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTC---SHHHHHHHHHHHHHH
T ss_pred cCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhC---HHHHHHHHHHHHhhh
Confidence 999887 68999999999 99999999999999999999999999998888777666 5553 478899999987654
Q ss_pred CCChhh---HHH-HHHHHHHHc-CcCcHHHHHHhhcCCC
Q 023017 250 YPDKNS---VIH-RIDIVDKCF-GLDTVEEIIDSLDDVA 283 (288)
Q Consensus 250 ~~~~~~---~~~-~~~~~~~~~-~~~~~e~~~~~lekr~ 283 (288)
. ..+. ... +...+..++ ++|..|++.+|+|||+
T Consensus 402 ~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~ 439 (440)
T 2np9_A 402 E-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP 439 (440)
T ss_dssp S-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred c-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 3 3222 111 223444555 7899999999999986
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=369.97 Aligned_cols=238 Identities=19% Similarity=0.226 Sum_probs=200.9
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
..++.+|+|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|+.||+|+|++++.... ...
T Consensus 23 ~~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~---~~~----- 93 (742)
T 3zwc_A 23 EYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFT---PGL----- 93 (742)
T ss_dssp EEEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSC---SCS-----
T ss_pred eEEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccC---hhH-----
Confidence 345668999999999997 79999999999999999999999999999999999999999999886431 111
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
.+++++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. |++|+
T Consensus 94 --~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ 171 (742)
T 3zwc_A 94 --ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLI 171 (742)
T ss_dssp --HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHH
Confidence 234677889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCH----------------------------------HHHHH
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDP----------------------------------SVIEA 240 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~----------------------------------~~~~~ 240 (288)
++|+.++|+||+++||||+|+|++.+++..+..++++.+++ .+...
T Consensus 172 ltG~~i~a~eA~~~GLv~~vv~~d~~~~A~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~A~~~ 251 (742)
T 3zwc_A 172 TSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPET 251 (742)
T ss_dssp HHCCCEEHHHHHHHTSCSEEESSCHHHHHHHHHHHHTTSCSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HcCCchhHHHHHHcCCccEecCchhhHHHHHHHHHHhcCCchhhhhhcccccccchhhhhHHHHHHHHhhhccchhHHHH
Confidence 99999999999999999999998766554443478887664 24445
Q ss_pred HHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhcCCCC
Q 023017 241 CLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLDDVAP 284 (288)
Q Consensus 241 ~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~lekr~p 284 (288)
.++.+........+..+. +.+.+..++ +++..+.+.+|+++|++
T Consensus 252 ~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~ 297 (742)
T 3zwc_A 252 CVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSA 297 (742)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Confidence 555555554444444443 467788888 68899999999977653
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-46 Score=366.77 Aligned_cols=250 Identities=17% Similarity=0.182 Sum_probs=210.9
Q ss_pred CcEEEE-eeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccccCChhhHHHhhccCChH
Q 023017 34 NQVLVE-GKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 34 ~~v~~~-~~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+.+.++ .+++|++||||||+ +.|+||.+|+.+|.++++.++.|+++|+||||| |+ .||+|.|++++.... ..+..
T Consensus 6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~-~~~~~ 83 (715)
T 1wdk_A 6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENF-KLPDA 83 (715)
T ss_dssp SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHT-TSCHH
T ss_pred CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcc-cCCHH
Confidence 468888 78999999999998 899999999999999999999999999999999 86 999999999886421 11222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+...+++++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~ 163 (715)
T 1wdk_A 84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN 163 (715)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHH
Confidence 3344556678889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC--C----------HH---------HHH--------
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD--D----------PS---------VIE-------- 239 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~--~----------~~---------~~~-------- 239 (288)
|++|+++|++++|+||+++||||+++|++++.+.+.++ ++++.. + |. ++.
T Consensus 164 A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ 243 (715)
T 1wdk_A 164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAG 243 (715)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888877777 677655 3 21 232
Q ss_pred ----------HHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhcCCCCC
Q 023017 240 ----------ACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLDDVAPS 285 (288)
Q Consensus 240 ----------~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~lekr~p~ 285 (288)
.+|+.++.......+..++ +.+.+..++ +++..+++.+|++||+|+
T Consensus 244 ~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 301 (715)
T 1wdk_A 244 QAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELK 301 (715)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhh
Confidence 3455666554444544433 355666676 789999999999998764
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-46 Score=367.77 Aligned_cols=249 Identities=18% Similarity=0.249 Sum_probs=202.0
Q ss_pred CcEEEE-eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccccCChhhHHHhhccCChHH
Q 023017 34 NQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 34 ~~v~~~-~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
..+.++ .+++|++|||||| +.|++|.+|+.+|.++++.++.|+++|+||||| |+ .||+|+|++++.... ..+...
T Consensus 7 ~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~-~~~~~~ 83 (725)
T 2wtb_A 7 GKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQ-KGNVKE 83 (725)
T ss_dssp CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-------------C
T ss_pred CeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhccc-chhhhh
Confidence 468888 7899999999999 799999999999999999999999999999999 86 999999999875321 000000
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |
T Consensus 84 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A 163 (725)
T 2wtb_A 84 PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKA 163 (725)
T ss_dssp CSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHH
Confidence 011233456677788999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC--CHH-HH----------------------------
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD--DPS-VI---------------------------- 238 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~--~~~-~~---------------------------- 238 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++.. ++. ++
T Consensus 164 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 243 (725)
T 2wtb_A 164 LEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAP 243 (725)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGCCTTSCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhhccccCccchHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998877776 677654 322 12
Q ss_pred -----HHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhcCCCCC
Q 023017 239 -----EACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLDDVAPS 285 (288)
Q Consensus 239 -----~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~lekr~p~ 285 (288)
..+|+.++.......+..++ +.+.+..++ +++..+++.+|++||+|+
T Consensus 244 g~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 297 (725)
T 2wtb_A 244 NMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTA 297 (725)
T ss_dssp TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG
T ss_pred CCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhc
Confidence 35777776554444444433 456677777 678999999999998875
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=343.64 Aligned_cols=214 Identities=14% Similarity=0.135 Sum_probs=190.9
Q ss_pred CccCCCCcEEEEeeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEc-CCCcccccC
Q 023017 28 VTDDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWEND-PNIGFVSMKG-SGRAFCAGG 95 (288)
Q Consensus 28 ~~~~~~~~v~~~~~~~v~~i~ln~p~----------~~N~l~~~~~~~l~~~l~~~~~d-~~v~vvvl~g-~g~~F~aG~ 95 (288)
+.+..++++.++++++|++|+||+|+ ++|++|.+|+.+|.++++.++.| +++|+|||+| .|+.||+|+
T Consensus 15 t~p~~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGa 94 (556)
T 2w3p_A 15 TDPSQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGA 94 (556)
T ss_dssp CCGGGCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEE
T ss_pred CCCCcCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCc
Confidence 34456778999999999999999998 89999999999999999999999 9999999999 899999999
Q ss_pred ChhhHHHhhccCChHHHHHHHHHHHHHHHHH----hcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEeccccc
Q 023017 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLL----GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL 169 (288)
Q Consensus 96 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~ 169 (288)
|++++... .......+.+.+++++..+ .++||||||+|||+|+|||++|+++||+|||+++ ++|++||++
T Consensus 95 DL~el~~~----~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~ 170 (556)
T 2w3p_A 95 NIFMLGLS----THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVP 170 (556)
T ss_dssp CHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHH
T ss_pred CHHHHhhc----ccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEeccccc
Confidence 99988642 1122334445567788888 9999999999999999999999999999999999 999999999
Q ss_pred -ccccCCCchHHHHh--hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHH
Q 023017 170 -IGFHPDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEK 244 (288)
Q Consensus 170 -~Gl~p~~g~~~~l~--~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~ 244 (288)
+|++|++|++++|+ +++|.. |++++++|+.++|+||+++||||+|+|++++.+.+.++ ++++..+|.++.. |..
T Consensus 171 ~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~~-K~l 249 (556)
T 2w3p_A 171 LLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHA-QGV 249 (556)
T ss_dssp HHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTTC-CCC
T ss_pred ccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHhh-hhh
Confidence 99999999999999 999998 99999999999999999999999999988888877777 7899999988764 554
Q ss_pred hh
Q 023017 245 YS 246 (288)
Q Consensus 245 l~ 246 (288)
.+
T Consensus 250 ~~ 251 (556)
T 2w3p_A 250 PL 251 (556)
T ss_dssp CC
T ss_pred hc
Confidence 43
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=197.79 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=137.8
Q ss_pred eeCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHH
Q 023017 40 GKANSRMAILNRPSALNA--LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR 117 (288)
Q Consensus 40 ~~~~v~~i~ln~p~~~N~--l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 117 (288)
.+++|++|++|+|.+.|+ ++..+.++|.++|+.++.|+++|+|||++. |.|+|+... .
T Consensus 299 ~~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~----spGG~~~~~----------------~ 358 (593)
T 3bf0_A 299 TGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTAS----------------E 358 (593)
T ss_dssp CSCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEE----EEEECHHHH----------------H
T ss_pred CCCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEec----CCCCCHHHH----------------H
Confidence 457899999999987888 688899999999999999999999999997 457777542 1
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccc------------cccccCCC---------
Q 023017 118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDA--------- 176 (288)
Q Consensus 118 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~--------- 176 (288)
.+++.+.++..++|||||+|+|.|.|||+.|+++||++||++++.|+.+++ ++|+.|..
T Consensus 359 ~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~ 438 (593)
T 3bf0_A 359 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV 438 (593)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCC
T ss_pred HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeeccccccc
Confidence 234556677889999999999999999999999999999999999999985 58887642
Q ss_pred ----chH---------------HHHhhcchHH------HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHH
Q 023017 177 ----GAS---------------FYLSHLPGHL------GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK 229 (288)
Q Consensus 177 ----g~~---------------~~l~~~~g~~------a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~ 229 (288)
+.+ ..+.+.++.. +.+++++|+.++|+||+++||||++++.+++.+.+..+..
T Consensus 439 ~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~ 516 (593)
T 3bf0_A 439 SITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK 516 (593)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence 222 3344444432 5788999999999999999999999987666655555433
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-21 Score=164.51 Aligned_cols=167 Identities=12% Similarity=0.045 Sum_probs=123.2
Q ss_pred eCCEEEEEEcCCCCCCC-----CC--HHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 41 KANSRMAILNRPSALNA-----LN--TNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~-----l~--~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
+++|++|+++.+=..+. ++ .-.+.+|.++|+.+++|+++|+|||++. |.|.|+....
T Consensus 2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------ 65 (240)
T 3rst_A 2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------ 65 (240)
T ss_dssp CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence 46788888886522111 10 0136889999999999999999999997 6788876432
Q ss_pred HHHHHHHHHHHHHhc-CCCcEEEEEcCcccccccccccccCeEEEeCceEEecc---------------------ccccc
Q 023017 114 DFFRTLYSFIYLLGT-HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP---------------------ETLIG 171 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~-~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p---------------------e~~~G 171 (288)
.+.+.+..+.. ++|||||+++|.|.|||+.|+++||++||++++.|+.+ +++.|
T Consensus 66 ----~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G 141 (240)
T 3rst_A 66 ----EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSG 141 (240)
T ss_dssp ----HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESS
T ss_pred ----HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecc
Confidence 23345556666 89999999999999999999999999999999999999 55667
Q ss_pred ccCCCchHH--------------------------HHhhcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHH
Q 023017 172 FHPDAGASF--------------------------YLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE 225 (288)
Q Consensus 172 l~p~~g~~~--------------------------~l~~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~ 225 (288)
..+..+..+ .-.|.+.....+-+++|+.+++++|+++||||++.+.+++.+.+.
T Consensus 142 ~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~ 221 (240)
T 3rst_A 142 AHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMK 221 (240)
T ss_dssp TTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHHHHHH
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHH
Confidence 666665321 122334444333478999999999999999999987655544443
Q ss_pred HH
Q 023017 226 EL 227 (288)
Q Consensus 226 ~~ 227 (288)
++
T Consensus 222 ~~ 223 (240)
T 3rst_A 222 KD 223 (240)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=157.41 Aligned_cols=147 Identities=12% Similarity=0.189 Sum_probs=123.3
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (288)
.+.|++|++++ ++++++.+.|.+.|+.++++ ++++|+|+.. |.|+++... .
T Consensus 7 ~~~V~vI~i~g-----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~-------------------~ 57 (230)
T 3viv_A 7 KNIVYVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM-------------------M 57 (230)
T ss_dssp CCEEEEEEEES-----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH-------------------H
T ss_pred CCeEEEEEEeC-----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH-------------------H
Confidence 45689999984 69999999999999999864 6999999986 777766432 2
Q ss_pred HHHHHHhcCCCcEEEEE---cCcccccccccccccCeEEEeCceEEecccccccccCCCchH---------------HHH
Q 023017 121 SFIYLLGTHLKPHVAIL---NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS---------------FYL 182 (288)
Q Consensus 121 ~l~~~l~~~~kp~Iaav---~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l 182 (288)
.++..+..++||||++| +|.|.|+|+.|+++||++++.+++.|+.++...+. |..|.. ..+
T Consensus 58 ~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~l 136 (230)
T 3viv_A 58 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSL 136 (230)
T ss_dssp HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence 45566778999999999 99999999999999999999999999999987533 444432 246
Q ss_pred hhcchH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 023017 183 SHLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 183 ~~~~g~--~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
++..|. . +.+++..++.++|+||+++||||+|+++
T Consensus 137 a~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~ 174 (230)
T 3viv_A 137 AQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 174 (230)
T ss_dssp HHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred HHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence 777885 4 8999999999999999999999999975
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=131.96 Aligned_cols=138 Identities=11% Similarity=0.103 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++.++.+++.+.|..++.++.++.|+|.-. |.|.++..- ..++..+..+++||++.+
T Consensus 54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~In----SPGG~v~ag-------------------~~I~~~i~~~~~pV~t~v 110 (218)
T 1y7o_A 54 VEDNMANSVIAQLLFLDAQDSTKDIYLYVN----TPGGSVSAG-------------------LAIVDTMNFIKADVQTIV 110 (218)
T ss_dssp BCHHHHHHHHHHHHHHHHHCTTSCEEEEEE----ECCBCHHHH-------------------HHHHHHHHHSSSCEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 889999999999999998777777777642 334333211 124445667899999999
Q ss_pred cCcccccccccccccCe--EEEeCceEEecccccccccCCCch------------------HHHHhhcchH--H-HHHHH
Q 023017 138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGA------------------SFYLSHLPGH--L-GEFLA 194 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~------------------~~~l~~~~g~--~-a~~l~ 194 (288)
+|.|.++|+.|+++||. |+|.+++.|++++.. |..|..|. ...+++..|. . +.+++
T Consensus 111 ~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~ 189 (218)
T 1y7o_A 111 MGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADA 189 (218)
T ss_dssp EEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999 999999999999987 44443332 2456666665 3 77888
Q ss_pred hcCCCCCHHHHHHcCccceecCCCC
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEK 219 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~ 219 (288)
..|+.++|+||+++||||+|+++++
T Consensus 190 ~~~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 190 ERDNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp HSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred hCCCEEcHHHHHHCCCCcEEcCcCC
Confidence 9999999999999999999998765
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-16 Score=138.34 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 023017 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (288)
Q Consensus 44 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (288)
|.++-.+..-..|+++..+..++.++++.+.++ .+.+|+|++.| |+|+.+... .. ..+.+++
T Consensus 120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~--------~l----~~~~~i~ 181 (304)
T 2f9y_B 120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALM--------SL----MQMAKTS 181 (304)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHH--------HH----HHHHHHH
T ss_pred EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHH--------HH----HHHHHHH
Confidence 333444444468999999999999999999988 79999999965 888855321 11 2223344
Q ss_pred HHH---hcCCCcEEEEEcCcccccc-cccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCC
Q 023017 124 YLL---GTHLKPHVAILNGVTMGGG-AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK 199 (288)
Q Consensus 124 ~~l---~~~~kp~Iaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~ 199 (288)
..+ ...++|+|++|+|+|.||| +.++++||++||.++|.|++. +...+.+.+|.. ++++.
T Consensus 182 ~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-----l~~~~ 245 (304)
T 2f9y_B 182 AALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-----LPPGF 245 (304)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-----CCTTT
T ss_pred HHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-----CCccc
Confidence 444 5569999999999999999 788999999999999999987 355666666643 56889
Q ss_pred CCHHHHHHcCccceecCCCChhHHHHHH-HHhhc
Q 023017 200 LNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVT 232 (288)
Q Consensus 200 ~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~ 232 (288)
.+|+++.++|+||.|++++++.+.+.++ ..+..
T Consensus 246 ~~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~ 279 (304)
T 2f9y_B 246 QRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMN 279 (304)
T ss_dssp TBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHhcCCccEEeCcHHHHHHHHHHHHHhhc
Confidence 9999999999999999987776666555 44443
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=132.52 Aligned_cols=152 Identities=12% Similarity=0.079 Sum_probs=109.7
Q ss_pred eCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 41 KANSRMAILNRPS---------ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 41 ~~~v~~i~ln~p~---------~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
+|.-..|.-|.+. ..++++++......+.++.+++.. +-+|.|.-.++.+. |.....
T Consensus 115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~Ga~~-g~~ae~------------ 180 (327)
T 2f9i_A 115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKGAYP-GKAAEE------------ 180 (327)
T ss_dssp TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-CHHHHH------------
T ss_pred CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCCc-chhhhh------------
Confidence 4444445556654 347899999999999999998765 55666665433332 211110
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
......+.+++..+..+++|+|++|+|+|.|||+.++++||++||++++.|++ +.|.+++..++.+..+.. +
T Consensus 181 -~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A 253 (327)
T 2f9i_A 181 -RGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIA 253 (327)
T ss_dssp -TTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHH
T ss_pred -hhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHH
Confidence 11234455677789999999999999999999999999999999999999885 355555554444443434 6
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCC
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
.++ ..++|++|+++|+||+|+|.
T Consensus 254 ~e~----~~itA~~a~~~GlVd~VV~e 276 (327)
T 2f9i_A 254 AET----MKITAHDIKQLGIIDDVISE 276 (327)
T ss_dssp HHH----HTCBHHHHHHTTSSSEEECC
T ss_pred HHH----cCCCHHHHHHcCCceEEecC
Confidence 666 78999999999999999984
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=130.97 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=107.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.++++++......+.++.+++.. +-+|.|.-.++.+. |..... ......+.+++..+..+++|+|
T Consensus 152 ~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~Ga~~-g~~aE~-------------~g~~~~~a~~l~al~~~~vPvI 216 (339)
T 2f9y_A 152 FGMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEE-------------RGQSEAIARNLREMSRLGVPVV 216 (339)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHH-------------TTHHHHHHHHHHHHHTCSSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCcc-chHHHH-------------HHHHHHHHHHHHHHHhCCCCEE
Confidence 46899999999999999988764 55666665443332 111110 1123455667788999999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
++|+|+|.|||+.++++||++||++++.|++ +.|.++++.++.+..+.. +.++ ..++|++|+++|+||+
T Consensus 217 avV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~ 286 (339)
T 2f9y_A 217 CTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDS 286 (339)
T ss_dssp EEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSC
T ss_pred EEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeE
Confidence 9999999999999999999999999999996 567777777776666656 7776 6799999999999999
Q ss_pred ecCC
Q 023017 214 YSVS 217 (288)
Q Consensus 214 vv~~ 217 (288)
|+|.
T Consensus 287 VV~e 290 (339)
T 2f9y_A 287 IIPE 290 (339)
T ss_dssp CCCC
T ss_pred EecC
Confidence 9984
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=98.54 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++..+.+.+.+.|..++.++.++.|+|.=. |.|++... ...++..+..+++||++.+
T Consensus 36 I~~~~a~~i~~~L~~~~~~~~~k~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~v 92 (208)
T 2cby_A 36 VNDEIANRLCAQILLLAAEDASKDISLYIN----SPGGSISA-------------------GMAIYDTMVLAPCDIATYA 92 (208)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHCSSCEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence 788999999999999987766676666532 33333211 1234555677899999999
Q ss_pred cCcccccccccccccCe--EEEeCceEEecccccccccCCCchH------------------HHHhhcchH--H-HHHHH
Q 023017 138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS------------------FYLSHLPGH--L-GEFLA 194 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~~~~g~--~-a~~l~ 194 (288)
.|.|.++|..++++||. |++.+++.+++.....|. .|.. ..+.+..|. . ..+.+
T Consensus 93 ~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~ 169 (208)
T 2cby_A 93 MGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS 169 (208)
T ss_dssp EEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 99999999999999999 999999999988765332 1110 112222332 2 45567
Q ss_pred hcCCCCCHHHHHHcCccceecCCC
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
-.|+.++|+||+++||||++.+..
T Consensus 170 ~~~~~~ta~eA~e~GLvD~i~~~~ 193 (208)
T 2cby_A 170 DRDRWFTAAEALEYGFVDHIITRA 193 (208)
T ss_dssp HTTCEEEHHHHHHHTSCSEECSCC
T ss_pred hCCcEEcHHHHHHcCCCcEecCch
Confidence 889999999999999999998753
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-08 Score=91.52 Aligned_cols=244 Identities=9% Similarity=0.039 Sum_probs=170.8
Q ss_pred EEeeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCcccccCChhhHH--
Q 023017 38 VEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGSGRAFCAGGDIVSLY-- 101 (288)
Q Consensus 38 ~~~~~~v~~i~ln~p~~~-------------N~l~~~~~~~l~~~l~~~~-~d~~v~vvvl~g~g~~F~aG~Dl~~~~-- 101 (288)
+++..+++.++...|... +.....|..||.+++-.+. ++.++...++...|+. ..+.
T Consensus 272 i~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~-------~~~~~~ 344 (556)
T 2w3p_A 272 IDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA-------RHLLAA 344 (556)
T ss_dssp EETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH-------HHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH-------HHHhhh
Confidence 445567888888876532 2233457888877766665 5678999998887643 2211
Q ss_pred -Hh-hccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-Cccccccc-ccccccCeEEEeC-------ceEEecccccc
Q 023017 102 -HF-MNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN-GVTMGGGA-GVSIPGTFRVACG-------KTVFATPETLI 170 (288)
Q Consensus 102 -~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~-G~a~GgG~-~lal~~D~~ia~~-------~a~f~~pe~~~ 170 (288)
.. ..+.+.....+....+.+.+.++...+.-++|.|+ |.|+.|-+ +|+++||..++-+ ...+.+.+.++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (556)
T 2w3p_A 345 DASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNF 424 (556)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGG
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeecccc
Confidence 11 11334445566667778899999999999999997 99988765 8999999999843 48999999999
Q ss_pred cccCCCchHHHHhhcch-HH-HH--HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHh
Q 023017 171 GFHPDAGASFYLSHLPG-HL-GE--FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKY 245 (288)
Q Consensus 171 Gl~p~~g~~~~l~~~~g-~~-a~--~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l 245 (288)
|.+|..-+..+|.+.+- .. .. -=...|+++++++|.++|||+...++-+++++..-+ ++.++.+|.++-.+...+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (556)
T 2w3p_A 425 GLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEANL 504 (556)
T ss_dssp TTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcchhccchhhc
Confidence 99999888888877653 22 21 223569999999999999999998877887766555 899999999999888888
Q ss_pred hccCCCChhh-HHHHHHHHHHHc-CcCcHH----HHHHhhcCCCCCCCC
Q 023017 246 SDLVYPDKNS-VIHRIDIVDKCF-GLDTVE----EIIDSLDDVAPSYAY 288 (288)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~~e----~~~~~lekr~p~~~~ 288 (288)
+-......+. ...+...++.++ ...+.- .++.|=...++.|+|
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (556)
T 2w3p_A 505 RFNGPETMETRIFGRLTAWQNWIFNRPNAVGEKGALKVYGKGSKAQFDV 553 (556)
T ss_dssp SSCSCCCHHHHHHTHHHHHHHHHHTSHHHHSTTSHHHHTTTTCCCCCCC
T ss_pred ccCCchhhhhHHHHHhHHHHHHhhcCCCCCCCCcchhhcCCCccCcCCc
Confidence 7654444433 222333344433 433222 244454566777765
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.9e-08 Score=83.30 Aligned_cols=140 Identities=15% Similarity=0.084 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaa 136 (288)
.++..+.+.+...|..++.++..+.|+|.=. |.|+++.. ...++..+...++|+++.
T Consensus 35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~~-------------------~~~I~~~i~~~~~~V~t~ 91 (203)
T 3qwd_A 35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVTA-------------------GFAIYDTIQHIKPDVQTI 91 (203)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHHH-------------------HHHHHHHHHHhcCCcEEE
Confidence 3889999999999999987766665555433 33333321 113445566779999999
Q ss_pred EcCcccccccccccccC--eEEEeCceEEecccccccccCCCchHH---------------HHhhcchH--H-HHHHHhc
Q 023017 137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGH--L-GEFLALT 196 (288)
Q Consensus 137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~~g~--~-a~~l~l~ 196 (288)
+.|.|.++|..|+++|| .|++.+++.|.+....-|..-...-.. .+.+..|. . ...++-.
T Consensus 92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~ 171 (203)
T 3qwd_A 92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDR 171 (203)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTS
T ss_pred EeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhc
Confidence 99999999999999999 699999999998665433211000000 11222222 2 3455556
Q ss_pred CCCCCHHHHHHcCccceecCCCC
Q 023017 197 GAKLNGAEMMACGLATHYSVSEK 219 (288)
Q Consensus 197 g~~~~a~eA~~~Glv~~vv~~~~ 219 (288)
...++|+||++.||+|+|+.+..
T Consensus 172 d~~lta~EA~e~GliD~I~~~~~ 194 (203)
T 3qwd_A 172 DNFLTAEEAKEYGLIDEVMVPET 194 (203)
T ss_dssp CCCEEHHHHHHHTSCSEECCCCC
T ss_pred CceecHHHHHHcCCcCEecCCcc
Confidence 67799999999999999997653
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-09 Score=87.85 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++..+.+.+.+.|..++.++..+.|+|.=. |.|+++.. ...++..+..+++|+++.+
T Consensus 35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~v 91 (193)
T 1yg6_A 35 VEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVITA-------------------GMSIYDTMQFIKPDVSTIC 91 (193)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence 888999999999999987766776666543 33333321 1134455667889999999
Q ss_pred cCcccccccccccccCe--EEEeCceEEecccccccccCCCchH-H-----------------HHhhcchH--H-HHHHH
Q 023017 138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS-F-----------------YLSHLPGH--L-GEFLA 194 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~~~~g~--~-a~~l~ 194 (288)
.|.|..+|..++++||. |++.+++.++......|. .|.. - .+.+..|. . ...++
T Consensus 92 ~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~ 168 (193)
T 1yg6_A 92 MGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT 168 (193)
T ss_dssp EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred eeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 99999999999999999 999999999887654332 1110 0 01111221 1 23343
Q ss_pred hcCCCCCHHHHHHcCccceecCC
Q 023017 195 LTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
-.+..++++||+++||||++.++
T Consensus 169 ~~~~~~ta~eA~~~GliD~i~~~ 191 (193)
T 1yg6_A 169 ERDRFLSAPEAVEYGLVDSILTH 191 (193)
T ss_dssp SSCEEEEHHHHHHHTSSSEECCC
T ss_pred cCCeEEcHHHHHHcCCCCEecCC
Confidence 34556799999999999999865
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=85.41 Aligned_cols=137 Identities=14% Similarity=0.067 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++..+...+.+.|..++.++. +.|+|.=. |.|+++.. ...++..|...++|+++.+
T Consensus 48 I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~a-------------------~~~I~~~i~~~~~pV~t~v 103 (215)
T 2f6i_A 48 INKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSINE-------------------GLAILDIFNYIKSDIQTIS 103 (215)
T ss_dssp BCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence 788899999999998876555 65655533 33333221 1134455667889999999
Q ss_pred cCcccccccccccccCe--EEEeCceEEecccccccccC---CCch----HH--------HHhhcch--HH-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHP---DAGA----SF--------YLSHLPG--HL-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~--------~l~~~~g--~~-a~~l~l~g 197 (288)
.|.|..+|..++++||. |++.+++.+++.....|... +... .. .+.+..| .. ...++-.+
T Consensus 104 ~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~ 183 (215)
T 2f6i_A 104 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRD 183 (215)
T ss_dssp EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred eeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCC
Confidence 99999999999999999 99999999987765433211 1000 00 0111112 11 33444344
Q ss_pred CCCCHHHHHHcCccceecCCC
Q 023017 198 AKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~~~ 218 (288)
..++++||+++||||++.++.
T Consensus 184 ~~lta~eA~e~GLiD~I~~~~ 204 (215)
T 2f6i_A 184 YYMNALEAKQYGIIDEVIETK 204 (215)
T ss_dssp CEECHHHHHHHTSCSEECCCS
T ss_pred eecCHHHHHHCCCCCEecCCc
Confidence 567999999999999998754
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-08 Score=83.95 Aligned_cols=135 Identities=16% Similarity=0.069 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+++++.+.+...|..++.++..+.|+|.=. |.|+++.. ...++..+...++|+++.+
T Consensus 39 I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~-------------------~~~I~~~i~~~~~~v~t~~ 95 (201)
T 3p2l_A 39 VNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVTA-------------------GMGVYDTMQFIKPDVSTIC 95 (201)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHHhCCCeEEEE
Confidence 889999999999999987665666665533 33333321 1134455667889999999
Q ss_pred cCcccccccccccccCe--EEEeCceEEecccccccccCCCchHH------------------HHhhcchH--H-HHHHH
Q 023017 138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF------------------YLSHLPGH--L-GEFLA 194 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~~~~g~--~-a~~l~ 194 (288)
.|.|.++|..+++++|. |++.+++.+.+.....|. .|-.. .+.+..|. . ...++
T Consensus 96 ~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~ 172 (201)
T 3p2l_A 96 IGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDT 172 (201)
T ss_dssp EEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred cCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence 99999999999999998 999999999887765332 11110 01111221 1 33443
Q ss_pred hcCCCCCHHHHHHcCccceecCCC
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
-....++|+||++.||||+|+++.
T Consensus 173 ~~~~~lta~EA~e~GliD~I~~~~ 196 (201)
T 3p2l_A 173 DRDNFMMADEAKAYGLIDHVIESR 196 (201)
T ss_dssp SSCEEEEHHHHHHHTSCSEECCCS
T ss_pred hcCeeecHHHHHHcCCccEecCCH
Confidence 344557999999999999998763
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.7e-08 Score=84.15 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++.++...+...|..++.++..+.|+|.=. |-|+++..- ..++..|...++||++.+
T Consensus 91 I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~ag-------------------~aIyd~I~~~k~pV~t~v 147 (277)
T 1tg6_A 91 IDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVTAG-------------------LAIYDTMQYILNPICTWC 147 (277)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHHH-------------------HHHHHHHHHSCSCEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 888899999999998876555676666543 333333211 124445667789999999
Q ss_pred cCcccccccccccccCe--EEEeCceEEecccccccccCCCchHH---------------HHhhcchH--H-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~~g~--~-a~~l~l~g 197 (288)
.|.|..+|..|+++||. |++.+++.++......|......-.. .+.+..|. . ...++-.+
T Consensus 148 ~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd 227 (277)
T 1tg6_A 148 VGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERD 227 (277)
T ss_dssp EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSC
T ss_pred ccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 99999999999999999 99999999988765433211000000 01111121 1 34444445
Q ss_pred CCCCHHHHHHcCccceecCCC
Q 023017 198 AKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~~~ 218 (288)
..++|+||+++||||+|....
T Consensus 228 ~~lta~EAle~GLID~I~~~~ 248 (277)
T 1tg6_A 228 RYMSPMEAQEFGILDKVLVHP 248 (277)
T ss_dssp EEECHHHHHHHTSCSEECSSC
T ss_pred cccCHHHHHHCCCCCEecCcc
Confidence 667999999999999998754
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=70.12 Aligned_cols=152 Identities=12% Similarity=0.073 Sum_probs=96.4
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCccc-cc---CChhhHHHhhccCChHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFV--SMKGSGRAFC-AG---GDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vv--vl~g~g~~F~-aG---~Dl~~~~~~~~~~~~~~~~~ 114 (288)
++++.. |+.| +|.++...+...|..++.++..+-+ .|-+.|..-- .| +++.
T Consensus 27 ~~Riif--l~~~-----I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~---------------- 83 (205)
T 4gm2_A 27 SKRIIF--LSSP-----IYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT---------------- 83 (205)
T ss_dssp TTTEEE--ECSC-----CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHH----------------
T ss_pred cCCEEE--ECCE-----EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHH----------------
Confidence 566554 4444 8999999999999988854433323 3344441100 00 1111
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccC--eEEEeCceEEecccccccccCC-CchH------------
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPD-AGAS------------ 179 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~-~g~~------------ 179 (288)
....++..|...+.||...+-|.|.+.|..|++++| .|++.+++++.+.....|..-+ ..-.
T Consensus 84 ---aglaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~ 160 (205)
T 4gm2_A 84 ---DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKK 160 (205)
T ss_dssp ---HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHH
Confidence 122355567778999999999999999999999999 5999999999877665443111 0000
Q ss_pred ---HHHhhcchH--H-HHHHHhcCCCCCHHHHHHcCccceecCCC
Q 023017 180 ---FYLSHLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 180 ---~~l~~~~g~--~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
..+.+..|. . ..+++-....++|+||++.||||+|+.++
T Consensus 161 ~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e 205 (205)
T 4gm2_A 161 KVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 205 (205)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred HHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence 011111221 1 23444456669999999999999998753
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.9e-06 Score=81.40 Aligned_cols=87 Identities=14% Similarity=-0.025 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCccccc-CChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCc
Q 023017 62 MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAG-GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (288)
Q Consensus 62 ~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~ 140 (288)
....+.+.|+.+..|+.++.|+|.-. |.| .++... ..+++.+..+....|||||.+++
T Consensus 71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~----------------~~I~~~i~~~k~~gkpvva~~~~- 129 (593)
T 3bf0_A 71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSM----------------QYIGKALKEFRDSGKPVYAVGEN- 129 (593)
T ss_dssp EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHH----------------HHHHHHHHHHHHTTCCEEEEESC-
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHH----------------HHHHHHHHHHHhcCCeEEEEEcc-
Confidence 46778899999999999999999976 444 555432 22334555566667999999876
Q ss_pred ccccccccccccCeEEEeCceEEeccccc
Q 023017 141 TMGGGAGVSIPGTFRVACGKTVFATPETL 169 (288)
Q Consensus 141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~ 169 (288)
+..+|+.|+++||.+++.+.+.++...+.
T Consensus 130 aas~~y~lAsaad~i~~~P~~~vg~~g~~ 158 (593)
T 3bf0_A 130 YSQGQYYLASFANKIWLSPQGVVDLHGFA 158 (593)
T ss_dssp EEHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred chhHHHHHHHhCCEEEECCCceEEEeccc
Confidence 66778999999999999999999887664
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.4e-06 Score=82.25 Aligned_cols=145 Identities=13% Similarity=0.037 Sum_probs=98.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 133 (288)
+.-++.+.....+.++++.+.+.. +-+|.|.- |+|+.+.+-...+... .... .+..-..++.....|+
T Consensus 117 ~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGArlqe~~~~l~~~--~~~g----~i~~~~~~ls~~giP~ 184 (587)
T 1pix_A 117 LAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYPNR--RGGG----TPFFRNAELNQLGIPV 184 (587)
T ss_dssp TTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSSST--TSTT----HHHHHHHHHHHTTCCE
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEe-----CCCCCccccchhcccc--ccHH----HHHHHHHHHhCCCCCE
Confidence 556788999999999999998764 56777766 5666665432211100 0001 1222344567889999
Q ss_pred EEEEcCcccccccccccccCeEEEeC-ceEEeccccc--ccccCCCchHHHHhhcchHH-HHHHH-hcCCCCCHHH----
Q 023017 134 VAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETL--IGFHPDAGASFYLSHLPGHL-GEFLA-LTGAKLNGAE---- 204 (288)
Q Consensus 134 Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~--~Gl~p~~g~~~~l~~~~g~~-a~~l~-l~g~~~~a~e---- 204 (288)
|++|.|+|.|||... ..||++|+++ ++.+++.... -++.|- --++.. |.+++ .+|+.+++++
T Consensus 185 Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~--------~~~d~~~A~el~~~tge~v~~e~lgga 255 (587)
T 1pix_A 185 IVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPK--------GHVDLEYANEIADMVDRTGKTEPPGAV 255 (587)
T ss_dssp EEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSS--------SSCCHHHHHHHHHHHHTTCCCCCSSBH
T ss_pred EEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccc--------cccchhHHHHHHHHhCCccChhhcccH
Confidence 999999999999999 9999999987 4888763221 111110 115666 88888 8898887665
Q ss_pred -H--HHcCccceecCCCC
Q 023017 205 -M--MACGLATHYSVSEK 219 (288)
Q Consensus 205 -A--~~~Glv~~vv~~~~ 219 (288)
. .+.|++|.++++++
T Consensus 256 ~~h~~~~GvvD~vv~~e~ 273 (587)
T 1pix_A 256 DIHYTETGFMREVYASEE 273 (587)
T ss_dssp HHHTTTSCCSCEEESSHH
T ss_pred HHHHhhcCceeEecCCHH
Confidence 2 35999999998865
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.4e-05 Score=66.59 Aligned_cols=150 Identities=9% Similarity=0.061 Sum_probs=96.2
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-|.+. ..-+++....+.+.++++.+.+.. +-+|.|.-.|+ +-+.+- ...+ .....+...+.+
T Consensus 125 v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsgG-----ar~qEG--------i~sl-~q~aki~~~l~~ 189 (285)
T 2f9i_B 125 VAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASGG-----ARMQEG--------IISL-MQMGKTSVSLKR 189 (285)
T ss_dssp EEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEECS-----CCGGGH--------HHHH-HHHHHHHHHHHH
T ss_pred EEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC-----cchhhh--------hhhH-hHHHHHHHHHHH
Confidence 3344443 457899999999999999998764 67888876443 322220 0111 112334446667
Q ss_pred HhcCCCcEEEEEcCccccccccc-ccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~e 204 (288)
+.....|.|+.+.|+|.||+... ++.+|++++.++|.+++-... +....+.+.+. -.--+|+.
T Consensus 190 ~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~-------vi~~~~~~~~~---------e~~~~Ae~ 253 (285)
T 2f9i_B 190 HSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRR-------VIEQTINEKLP---------DDFQTAEF 253 (285)
T ss_dssp HHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH-------HHHHHHTSCCC---------TTTTBHHH
T ss_pred HHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHH-------HHHHHhcccch---------HhHhhHHH
Confidence 77889999999999999998654 789999999998877752221 11111111111 11124677
Q ss_pred HHHcCccceecCCCChhHHHHHH
Q 023017 205 MMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 205 A~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
+.+.|+||.|++++++.+...++
T Consensus 254 ~~~~G~iD~Iv~~~e~r~~l~~~ 276 (285)
T 2f9i_B 254 LLEHGQLDKVVHRNDMRQTLSEI 276 (285)
T ss_dssp HHHTTCCSEECCGGGHHHHHHHH
T ss_pred HHhcCCccEEeChHHHHHHHHHH
Confidence 78999999999987655544433
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=98.10 E-value=5.4e-05 Score=71.92 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=94.0
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|.-..|.-|... +.-+++....+.+.++++.+.++ .+-+|.|.-+ +|+.+.+- ......+.+.+
T Consensus 95 ~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dS-----gGaRmqEg--------~~~l~~~~~i~ 160 (530)
T 3iav_A 95 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDS-----GGARIQEG--------VASLGAYGEIF 160 (530)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CSBCGGGT--------HHHHHHHHHHH
T ss_pred CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-----CCcchhhh--------hhhHHHHHHHH
Confidence 3433334444443 66889999999999999999876 4677777764 44444321 11111222211
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~ 198 (288)
... .++.. -.|+|++|.|+|.|||......||++|++++ +.+++. |+..-+- .+|+
T Consensus 161 ~~~-~~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~~-~~ge 217 (530)
T 3iav_A 161 RRN-THASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIKT-VTGE 217 (530)
T ss_dssp HHH-HHTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH-HHCC
T ss_pred HHH-HHHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHHH-HhCC
Confidence 111 22223 3999999999999999998889999999885 777762 3221111 4678
Q ss_pred CCCHHHH-------HHcCccceecCCCC
Q 023017 199 KLNGAEM-------MACGLATHYSVSEK 219 (288)
Q Consensus 199 ~~~a~eA-------~~~Glv~~vv~~~~ 219 (288)
.+++++. ...|++|.++++++
T Consensus 218 ~v~~e~LGGa~~h~~~sGv~d~va~de~ 245 (530)
T 3iav_A 218 DVGFEELGGARTHNSTSGVAHHMAGDEK 245 (530)
T ss_dssp CCCHHHHHBHHHHHHTSCCCSEEESSHH
T ss_pred cCChhhcchHHHHHhccCceeEEecChH
Confidence 8888876 57999999998763
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.1e-05 Score=70.69 Aligned_cols=137 Identities=10% Similarity=0.117 Sum_probs=91.9
Q ss_pred EEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 023017 46 MAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124 (288)
Q Consensus 46 ~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (288)
.|.-+... +.-++.+...+.+.++++.+.+.. +-+|.|.- |+|+.+.+-. ..+..+.+.+....
T Consensus 108 ~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~d-----SGGARmqeg~--------~sl~~~~~i~~~~~- 172 (531)
T 3n6r_B 108 YVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGIND-----SGGARIQEGV--------DSLAGYGEVFQRNI- 172 (531)
T ss_dssp EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCCBCGGGTH--------HHHHHHHHHHHHHH-
T ss_pred EEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeC-----CCccccCccc--------chhhhHHHHHHHHH-
Confidence 33334433 567899999999999999998754 66777776 4455554311 11112222121111
Q ss_pred HHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHH
Q 023017 125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA 203 (288)
Q Consensus 125 ~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~ 203 (288)
++ ....|+|+++.|+|.|||......||++|+.++ +.+++ .|+..-+- .+|+.++++
T Consensus 173 ~~-s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~--------------------aGP~vI~~-~~ge~v~~E 230 (531)
T 3n6r_B 173 MA-SGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV--------------------TGPDVVKT-VTNEQVSAE 230 (531)
T ss_dssp HT-TTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHHH-HHCCCCCHH
T ss_pred HH-hCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEee--------------------cCHHHHHH-HhCCccChh
Confidence 12 245899999999999999988888999999985 66554 12221111 468999999
Q ss_pred HH-------HHcCccceecCCCC
Q 023017 204 EM-------MACGLATHYSVSEK 219 (288)
Q Consensus 204 eA-------~~~Glv~~vv~~~~ 219 (288)
+. .+.|++|.++++|+
T Consensus 231 ~LGGa~~h~~~sG~~d~v~~~e~ 253 (531)
T 3n6r_B 231 ELGGATTHTRKSSVADAAFENDV 253 (531)
T ss_dssp HHHBHHHHHHTTSCCSEEESSHH
T ss_pred hcchHHHHhhccCcceEEeCCHH
Confidence 98 88999999998854
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00024 Score=67.61 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=91.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-+... ..-++.....+.+.++++.+.++ .+-+|.|.. |+|+.+.+-.. ....+.+.+..+. +
T Consensus 99 v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~--------sl~~~~~i~~~~~-~ 163 (523)
T 1on3_A 99 AASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGID--------SLSGYGKMFFANV-K 163 (523)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHH--------HHHHHHHHHHHHH-H
T ss_pred EEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHH--------HHHHHHHHHHHHH-H
Confidence 3334433 56789999999999999999875 466777776 66666654221 1122222222222 2
Q ss_pred HhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHH--
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA-- 203 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~-- 203 (288)
+ ....|.|+++.|+|.||+......||++|+.+++.+++. |+..-+- .+|+.++.+
T Consensus 164 ~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~-~~ge~~~~e~l 221 (523)
T 1on3_A 164 L-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS-VTGEDVTADEL 221 (523)
T ss_dssp H-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH-HHCCCCCHHHH
T ss_pred h-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH-HhCCcCChHhc
Confidence 2 345999999999999999998899999999998877654 2221111 346777754
Q ss_pred ---HHH--HcCccceecCCC
Q 023017 204 ---EMM--ACGLATHYSVSE 218 (288)
Q Consensus 204 ---eA~--~~Glv~~vv~~~ 218 (288)
|.+ +.|++|.+++++
T Consensus 222 ggae~h~~~~G~vd~vv~d~ 241 (523)
T 1on3_A 222 GGAEAHMAISGNIHFVAEDD 241 (523)
T ss_dssp HSHHHHHHTTCCCSEEESSH
T ss_pred ccHHHHhhccCceEEEeCCH
Confidence 333 599999999975
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00025 Score=67.72 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=90.1
Q ss_pred EEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 023017 46 MAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124 (288)
Q Consensus 46 ~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (288)
.|.-+... +.-++.+...+.+.++++.+.++ .+-+|.|.- |+|+.+.+-. .....+.+.+....
T Consensus 111 ~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~--------~sl~~~~~i~~~~~- 175 (548)
T 2bzr_A 111 CIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGV--------VSLGLYSRIFRNNI- 175 (548)
T ss_dssp EEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTT--------HHHHHHHHHHHHHH-
T ss_pred EEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHH--------HHHHHHHHHHHHHH-
Confidence 33334443 56789999999999999999876 467788777 5566664321 11112222222222
Q ss_pred HHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHH
Q 023017 125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA 203 (288)
Q Consensus 125 ~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~ 203 (288)
++ ....|.|+++.|+|.||+......||++|+.++ +.+++. |+..-+- .+|+.++.+
T Consensus 176 ~~-s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~-~~ge~v~~e 233 (548)
T 2bzr_A 176 LA-SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT-VTGEEVTME 233 (548)
T ss_dssp HT-TTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH-HHCCCCCHH
T ss_pred Hh-cCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH-HhCCcCChH
Confidence 12 344999999999999999988889999999986 776654 2221111 346777764
Q ss_pred -----HHH--HcCccceecCCC
Q 023017 204 -----EMM--ACGLATHYSVSE 218 (288)
Q Consensus 204 -----eA~--~~Glv~~vv~~~ 218 (288)
+.+ +.|++|.+++++
T Consensus 234 ~lggae~h~~~sG~~d~vv~d~ 255 (548)
T 2bzr_A 234 ELGGAHTHMAKSGTAHYAASGE 255 (548)
T ss_dssp HHHBHHHHHHTSSCCSEEESSH
T ss_pred hcccHHHHhhccCceeEEeCCH
Confidence 323 599999999865
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00039 Score=66.11 Aligned_cols=150 Identities=12% Similarity=0.120 Sum_probs=95.9
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|.-..|.-+... ..-++.....+.+.++++.+.++ .+-+|.|.. |+|+.+.+-.. ....+.+.+
T Consensus 89 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~--------sl~~~~~i~ 154 (522)
T 1x0u_A 89 DGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGAL--------SLEGYGAVF 154 (522)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHH--------HHHHHHHHH
T ss_pred CCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHH--------HHHHHHHHH
Confidence 3433334444443 56789999999999999999875 467788876 56666654221 112222222
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-e-EEecccccccccCCCchHHHHhhcchHHHHHHHhcC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-T-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTG 197 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a-~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g 197 (288)
..+. ++ ....|.|+.+.|+|.||+......||++|+.++ + .+++ .|+..-+- .+|
T Consensus 155 ~~~~-~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~--------------------aGP~vI~~-~~g 211 (522)
T 1x0u_A 155 KMNV-MA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFV--------------------TGPEITKV-VLG 211 (522)
T ss_dssp HHHH-HH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEES--------------------SCHHHHHH-TTC
T ss_pred HHHH-Hh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEe--------------------cCHHHHHH-HhC
Confidence 2222 22 445999999999999999998899999999987 7 6655 12221111 456
Q ss_pred CCCCHH-----HHH--HcCccceecCCCC-hhHHHHHH
Q 023017 198 AKLNGA-----EMM--ACGLATHYSVSEK-LPLIEEEL 227 (288)
Q Consensus 198 ~~~~a~-----eA~--~~Glv~~vv~~~~-l~~~~~~~ 227 (288)
+.++.+ |.+ +.|++|.+++++. ..+.+.++
T Consensus 212 e~~~~e~lggae~~~~~~G~~d~vv~~~~~~~~~~~~l 249 (522)
T 1x0u_A 212 EEVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRL 249 (522)
T ss_dssp CCCCHHHHHBHHHHHHTTCCCSEEESCHHHHHHHHHHH
T ss_pred CcCChhhcchHHHHhhcCceeEEEeCCHHHHHHHHHHH
Confidence 777754 323 5899999999753 33333333
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00046 Score=65.87 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=88.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 133 (288)
+.-++.+.....+.++++.+.+. .+-+|.|.-+|+.. +..-...+.. .... ..+..-..++.....|+
T Consensus 133 ~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgGAR-----l~~q~~~~~~--~~~~----~~i~~~~~~ls~~giP~ 200 (555)
T 3u9r_B 133 KGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGGAN-----LPRQDEVFPD--REHF----GRIFFNQANMSARGIPQ 200 (555)
T ss_dssp GGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCCBC-----GGGGGGTSSS--TTST----THHHHHHHHHHHTTCCE
T ss_pred ccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCCCC-----CCCcceeecc--cccH----HHHHHHHHHHhcCCCCE
Confidence 56779999999999999999876 46677777655443 2110000000 0000 11112233456678999
Q ss_pred EEEEcCcccccccccccccCeEEEeC-ceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHH-------
Q 023017 134 VAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEM------- 205 (288)
Q Consensus 134 Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA------- 205 (288)
|++|.|+|.|||......||++|+.+ ++.+. + + |+..-+. .+|+.+++++.
T Consensus 201 Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~-------~---a----------GP~vik~-~~ge~~~~e~LGGa~~h~ 259 (555)
T 3u9r_B 201 IAVVMGSCTAGGAYVPAMSDETVMVREQATIF-------L---A----------GPPLVKA-ATGEVVSAEELGGADVHC 259 (555)
T ss_dssp EEEECSCCBGGGGHHHHTSSEEEEETTTCBCB-------S---S----------CHHHHHH-HHCCCCCHHHHHBHHHHH
T ss_pred EEEEecCCCccHHHHHHhCCceEEecCCceEE-------E---c----------cHHHHHH-HhcCccChhhccchhhhh
Confidence 99999999999999999999999876 34333 2 1 2221111 56899999988
Q ss_pred HHcCccceecCCCC
Q 023017 206 MACGLATHYSVSEK 219 (288)
Q Consensus 206 ~~~Glv~~vv~~~~ 219 (288)
...|++|.++++++
T Consensus 260 ~~sGv~d~v~~de~ 273 (555)
T 3u9r_B 260 KVSGVADHYAEDDD 273 (555)
T ss_dssp HTTCSCSEEESSHH
T ss_pred hccCceeEEeCCHH
Confidence 78999999998765
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0009 Score=63.69 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=84.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 133 (288)
+.-++.+...+.+.++++.+.+.. +-+|.|.- |+|+.+.+-.. ....+.+.+.... ......|+
T Consensus 110 ~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGAR~qeg~~--------~l~g~~~~~~~~~--~~s~~iP~ 173 (527)
T 1vrg_A 110 MGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVD--------ALAGYGEIFLRNT--LASGVVPQ 173 (527)
T ss_dssp GGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHH--------HHHHHHHHHHHHH--HHTTTSCE
T ss_pred cCccccHHHHHHHHHHHHHHHHcC-CCEEEEEC-----CCCCCccchhH--------HHHHHHHHHHHHH--HhCCCCCE
Confidence 567899999999999999988753 56777776 34444432111 1112222222222 22556999
Q ss_pred EEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHH-----HHH-
Q 023017 134 VAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA-----EMM- 206 (288)
Q Consensus 134 Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~-----eA~- 206 (288)
|+.|.|+|.|||......||++|+.++ +.+++ .|+...+- .+|+.++.+ +.+
T Consensus 174 Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~vi~~-~~ge~v~~e~lggae~~~ 232 (527)
T 1vrg_A 174 ITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPNVIKA-VTGEEISQEDLGGAMVHN 232 (527)
T ss_dssp EEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHHH-HHCCCCCHHHHHBHHHHH
T ss_pred EEEEeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHHHHHH-HhCCCCCccccccHHHHh
Confidence 999999999999988889999999987 65333 12221111 346666653 323
Q ss_pred -HcCccceecCCC
Q 023017 207 -ACGLATHYSVSE 218 (288)
Q Consensus 207 -~~Glv~~vv~~~ 218 (288)
+.|++|.+++++
T Consensus 233 ~~~G~vd~vv~d~ 245 (527)
T 1vrg_A 233 QKSGNAHFLADND 245 (527)
T ss_dssp HTSCCCSEEESSH
T ss_pred hcccceEEEecCH
Confidence 599999999875
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00022 Score=67.85 Aligned_cols=148 Identities=14% Similarity=0.063 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-+++++......+.++.+++. .+-+|.|.-.+ |+.+..- .+.....+.+.+++..+.....|.|
T Consensus 338 gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~-----G~~~G~~---------~E~~G~~~~~Ak~l~~~~~~~vP~I 402 (522)
T 1x0u_A 338 GGSIDIDAADKAARFIRFCDAF-NIPLISLVDTP-----GYVPGTD---------QEYKGIIRHGAKMLYAFAEATVPKI 402 (522)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-----CBCCSHH---------HHHTTHHHHHHHHHHHHHHCCSCEE
T ss_pred CCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCC-----CCCCchH---------HHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 3579999999999999988754 57788877643 3333111 1111123355567788889999999
Q ss_pred EEEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHHhhc-chH-----H-HHHHH--hcCCCCC
Q 023017 135 AILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH-----L-GEFLA--LTGAKLN 201 (288)
Q Consensus 135 aav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-~g~-----~-a~~l~--l~g~~~~ 201 (288)
+.|-|+|.|||+.... .+|+++|.+++.+++- .+-|....+-+. +-. . ..++. +.-..-+
T Consensus 403 svi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~-------gpegaa~Il~r~~i~~~~d~~~~~~~l~~~y~~~~~~ 475 (522)
T 1x0u_A 403 TVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVT-------GPEGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFAN 475 (522)
T ss_dssp EEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTSSSSSSSSSSSSSSHHHHHHHHHHHSS
T ss_pred EEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEec-------CHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhcCC
Confidence 9999999999774443 4999999988877642 222222222222 110 0 01111 0001245
Q ss_pred HHHHHHcCccceecCCCChhHHH
Q 023017 202 GAEMMACGLATHYSVSEKLPLIE 224 (288)
Q Consensus 202 a~eA~~~Glv~~vv~~~~l~~~~ 224 (288)
+..+.+.|+||.|+++.++....
T Consensus 476 ~~~~~~~G~iD~II~p~~tR~~L 498 (522)
T 1x0u_A 476 PYWAAEKGLVDDVIEPKDTRRVI 498 (522)
T ss_dssp SHHHHHTTSSSEECCGGGHHHHH
T ss_pred HHHHHhcCCCcEeECHHHHHHHH
Confidence 67799999999999987665433
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0032 Score=59.92 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++-.....+.++.+++ ..+-+|.|.-..+ |..|.+-+ .....+.+.+++..+.....|+|+
T Consensus 344 G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDtpG-~~~G~~~E-------------~~g~~~~~A~~~~a~~~~~vP~is 408 (527)
T 1vrg_A 344 GVLDIDSSDKAARFIRFLDA-FNIPILTFVDTPG-YLPGVAQE-------------HGGIIRHGAKLLYAYSEATVPKIT 408 (527)
T ss_dssp GCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECC-BCCCHHHH-------------HTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHhh-cCCCeEEEecCCC-CcCchhhH-------------HhHHHHHHHHHHHHHhcCCCCEEE
Confidence 57999999999999988864 4566676665322 33332111 112234555677888899999999
Q ss_pred EEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHHhhcc-h----HH-H-HHHH--hcCCCCCH
Q 023017 136 ILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-G----HL-G-EFLA--LTGAKLNG 202 (288)
Q Consensus 136 av~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~-g----~~-a-~~l~--l~g~~~~a 202 (288)
.|-|.|.|||+.-.. .+|+++|.+++.++ +.++-|....+-+.- - .. . .++. +.-..-++
T Consensus 409 vI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p 481 (527)
T 1vrg_A 409 VILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANP 481 (527)
T ss_dssp EEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSH
T ss_pred EEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCH
Confidence 999999988775443 38998888777766 433333333333211 1 11 1 1121 11123567
Q ss_pred HHHHHcCccceecCCCChhH
Q 023017 203 AEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 203 ~eA~~~Glv~~vv~~~~l~~ 222 (288)
..+.+.|+||.|+++.+...
T Consensus 482 ~~~~~~g~iD~II~p~~tR~ 501 (527)
T 1vrg_A 482 YIAASRGYVDMVIDPRETRK 501 (527)
T ss_dssp HHHHHTTSSSEECCGGGHHH
T ss_pred HHHHHcCCCCeeeCHHHHHH
Confidence 88999999999999866544
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0019 Score=61.32 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++-.....+.++.+++ .++-+|.|.-.. .|..|.+- +.....+...+++..+.....|+|+
T Consensus 340 G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDtp-Gf~~G~~~-------------E~~Gi~~~~A~~l~a~a~~~vP~it 404 (523)
T 1on3_A 340 GCLDINASDKAAEFVNFCDS-FNIPLVQLVDVP-GFLPGVQQ-------------EYGGIIRHGAKMLYAYSEATVPKIT 404 (523)
T ss_dssp GCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-CBCCCHHH-------------HHTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCC-CcCcchHH-------------HHhhHHHHHHHHHHHHhcCCCCEEE
Confidence 46999999999999988864 456667666532 23333222 1122345566788888999999999
Q ss_pred EEcCcccccccccccc----cCeEEEeCceEEecccccccccCCCchHHHHhhcc-h----HH-H-HHHHh--cCCCCCH
Q 023017 136 ILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-G----HL-G-EFLAL--TGAKLNG 202 (288)
Q Consensus 136 av~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~-g----~~-a-~~l~l--~g~~~~a 202 (288)
.|-|.+.|||+.-... +|+++|.+++.++ +.++-|....+-+.- . .. . .++.- .-..-++
T Consensus 405 vI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p 477 (523)
T 1on3_A 405 VVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTP 477 (523)
T ss_dssp EEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSH
T ss_pred EEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCH
Confidence 9999999988754444 8888887777665 433333333333221 1 11 1 11210 1112566
Q ss_pred HHHHHcCccceecCCCChhH
Q 023017 203 AEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 203 ~eA~~~Glv~~vv~~~~l~~ 222 (288)
..+.+.|+||.|+++.+...
T Consensus 478 ~~~a~~g~iD~II~p~~tR~ 497 (523)
T 1on3_A 478 YVAAARGQVDDVIDPADTRR 497 (523)
T ss_dssp HHHHHTTSSSEECCGGGHHH
T ss_pred HHHHhcCCCCEeeCHHHHHH
Confidence 78999999999999866544
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0042 Score=59.28 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++-.....+.++.+++ .++-+|.|.-.+ .|..|.+-++ ....+...+++..+.....|+|+
T Consensus 361 G~l~~~~a~Kaar~i~~a~~-~~iPlv~lvDt~-Gf~~G~~~E~-------------~Gi~~~ga~~l~a~~~~~VP~is 425 (548)
T 2bzr_A 361 GCLDINASEKAARFVRTCDC-FNIPIVMLVDVP-GFLPGTDQEY-------------NGIIRRGAKLLYAYGEATVPKIT 425 (548)
T ss_dssp GCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-CBCCCHHHHH-------------TTHHHHHHHHHHHHHHCCSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCCCEEEEeecc-CCCCChHHHH-------------hhHHHHHHHHHHHHhCCCCCEEE
Confidence 57999999999999998875 456666666532 2333322221 12234455677788889999999
Q ss_pred EEcCcccccccccc----cccCeEEEeCceEEecccccccccCCCchHHHHhhc-chH------H-H---HHHHh--cCC
Q 023017 136 ILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH------L-G---EFLAL--TGA 198 (288)
Q Consensus 136 av~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-~g~------~-a---~~l~l--~g~ 198 (288)
.|-|.|.|||..-. +.+|+++|.+++.++ +.++-|....+.+. ... . + .++.- .-.
T Consensus 426 vI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~~ 498 (548)
T 2bzr_A 426 VITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDT 498 (548)
T ss_dssp EEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTCCC----------CHHHHHHHHHHHHHH
T ss_pred EEeCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHHHh
Confidence 99999999887544 348999998887776 33333333333332 100 1 1 11111 001
Q ss_pred CCCHHHHHHcCccceecCCCChhHH
Q 023017 199 KLNGAEMMACGLATHYSVSEKLPLI 223 (288)
Q Consensus 199 ~~~a~eA~~~Glv~~vv~~~~l~~~ 223 (288)
.-++..+.+.|+||.|+++.+....
T Consensus 499 ~~~p~~~a~~g~iD~II~p~~tR~~ 523 (548)
T 2bzr_A 499 LVNPYVAAERGYVGAVIPPSHTRGY 523 (548)
T ss_dssp HSBSHHHHHTTSSSEECCGGGHHHH
T ss_pred hCCHHHHHhcCCCceeeCHHHHHHH
Confidence 2345678999999999998765543
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.013 Score=56.36 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=99.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-.++++-.....+.++..++ .++-+|.|.-.. .|..|.+- +.....+...+++..+..+..|+|
T Consensus 384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp-Gf~~G~~~-------------E~~Gi~~~gA~~~~a~a~a~vP~i 448 (587)
T 1pix_A 384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDTT-GIDVGNDA-------------EKAELLGLGQSLIYSIQTSHIPQF 448 (587)
T ss_dssp TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECCC-EECCSHHH-------------HHTTHHHHHHHHHHHHHTCCCCEE
T ss_pred CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecCC-CCCCcHHH-------------HHHHHHHHHHHHHHHHHhCCCCEE
Confidence 346999999999999987764 557777776643 34444222 222335567788999999999999
Q ss_pred EEEcCcccccccccccc-----c--CeEEEeCceEEecccccccccCCCchHHHHhhcc-hH-----------H------
Q 023017 135 AILNGVTMGGGAGVSIP-----G--TFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-GH-----------L------ 189 (288)
Q Consensus 135 aav~G~a~GgG~~lal~-----~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~-g~-----------~------ 189 (288)
+.|-|.+.|||.. +++ + |+++|.+++.++ +.++-|....+.+.- .. .
T Consensus 449 tvI~g~~~Ggg~~-am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~ 520 (587)
T 1pix_A 449 EITLRKGTAAAHY-VLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNL 520 (587)
T ss_dssp EEECSEEETTHHH-HTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred EEEcCCCccHHHH-HhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHH
Confidence 9999999988753 443 4 998888887776 333333333332211 10 0
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHH-HHHHhhcCC
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE-ELGKLVTDD 234 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~-~~~~l~~~~ 234 (288)
..++- +..++..|.+.|+||.|+++.+...... .++.+...+
T Consensus 521 ~~~y~---~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~ 563 (587)
T 1pix_A 521 IQAFY---TKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP 563 (587)
T ss_dssp HHHHH---HTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred HHHHH---HhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence 11111 2478889999999999999887665433 334444333
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0053 Score=58.93 Aligned_cols=151 Identities=13% Similarity=0.014 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 133 (288)
+.-++++...+.+.++++.+.+.. +-+|.|.-+|+. .+.+-..... ......+.+ .-..++.....|+
T Consensus 118 ~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSgGA-----rl~~qe~~~~--~l~~~g~if----~~~~~ls~~~iP~ 185 (588)
T 3gf3_A 118 MAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCSGV-----EFPNQDKVYP--NRRGGGTPF----FRNSELNQLGIPV 185 (588)
T ss_dssp GGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCCCB-----CGGGHHHHSS--STTSTTHHH----HHHHHHHHTTCCE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCCCc-----Cccccccccc--chhhHHHHH----HHHHHHhcCCCCE
Confidence 567788999999999999998654 667777775443 3321000000 000001111 1223455678999
Q ss_pred EEEEcCcccccccccccccCeEEEeCceEEeccccc--ccccCCCchHHHHhhc---chHH-HHHHHhcCCCCCHHHHH-
Q 023017 134 VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL--IGFHPDAGASFYLSHL---PGHL-GEFLALTGAKLNGAEMM- 206 (288)
Q Consensus 134 Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~--~Gl~p~~g~~~~l~~~---~g~~-a~~l~l~g~~~~a~eA~- 206 (288)
|+.|.|+|.|||...++++|++++.+++.+++..-. -|+-|.+ .+.+.- +... ..+-..+.+.+.+.+.+
T Consensus 186 Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g---~~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~ 262 (588)
T 3gf3_A 186 IVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG---YIDDEAAEQIIAAQIENSKLKVPAPGSVPIHY 262 (588)
T ss_dssp EEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCCCTTBHHHHT
T ss_pred EEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc---cccccchhhhhhhhccccccChhhccchhhhc
Confidence 999999999998877888888888888888875443 1211211 011111 1112 22222467778777777
Q ss_pred -HcCccceecCCCC
Q 023017 207 -ACGLATHYSVSEK 219 (288)
Q Consensus 207 -~~Glv~~vv~~~~ 219 (288)
..|++|.++++|+
T Consensus 263 ~~sGv~d~~a~de~ 276 (588)
T 3gf3_A 263 DETGFFREVYQNDL 276 (588)
T ss_dssp TTSCCSCEEESSHH
T ss_pred cccccceEEeCCHH
Confidence 5999999998764
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0072 Score=57.36 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=95.1
Q ss_pred EEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHH
Q 023017 48 ILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 126 (288)
Q Consensus 48 ~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 126 (288)
.=|+|. ..-.++++......+.++..++ .++-+|.|.-..+ |..|.+ .+.....+...+++..+
T Consensus 343 ian~~~~~~G~l~~~~a~Kaarfi~lcd~-~~iPlv~lvDtpG-f~~G~~-------------~E~~Gi~~~gAk~l~a~ 407 (531)
T 3n6r_B 343 VANQPLVLAGCLDIDSSRKAARFVRFCDA-FEIPLLTLIDVPG-FLPGTS-------------QEYGGVIKHGAKLLYAY 407 (531)
T ss_dssp EEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECS-BCCSHH-------------HHHTTHHHHHHHHHHHH
T ss_pred EEecccccCCCCCHHHHHHHHHHHHHhhc-cCCCEEEEeCCCC-CCCCHH-------------HHHhhHHHHHHHHHHHH
Confidence 335543 2247999999999999987775 4577777765432 333322 12223356667888899
Q ss_pred hcCCCcEEEEEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHHhh-cch----H-H-HHHHHh
Q 023017 127 GTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPG----H-L-GEFLAL 195 (288)
Q Consensus 127 ~~~~kp~Iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-~~g----~-~-a~~l~l 195 (288)
..+..|+|+.|-|.+.|||..-.. .+|+++|.+++.++ +.++-|+...+.+ .+. . . ..++-
T Consensus 408 a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~-------Vm~pegaa~Il~r~~~~~~~~~~~~~~~y~- 479 (531)
T 3n6r_B 408 GEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA-------VMGAKGATEIIHRGDLGDPEKIAQHTADYE- 479 (531)
T ss_dssp HHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHCCTTTTSTTHHHHHHHHHH-
T ss_pred HhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe-------cCCHHHHHHHHhcccccchhHHHHHHHHHH-
Confidence 999999999999999998875433 38999988887766 3333333333322 110 1 1 11111
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhH
Q 023017 196 TGAKLNGAEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~~l~~ 222 (288)
-+.-++-.|.+.|+||.|+++.+...
T Consensus 480 -~~~~~p~~aa~~~~vD~vIdP~~TR~ 505 (531)
T 3n6r_B 480 -ERFANPFVASERGFVDEVIQPRSTRK 505 (531)
T ss_dssp -HHHSSSHHHHHHTSSSEECCGGGHHH
T ss_pred -HHhcCHHHHHhcCccCcccCHHHHHH
Confidence 11234556778999999999877554
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.013 Score=55.57 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=97.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.=|+|. ..-.++++......+.++..++. ++-+|.|.-..+ |..|.+- +.....+...+++..
T Consensus 336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~-------------E~~gi~~~~Ak~l~a 400 (530)
T 3iav_A 336 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQ-------------EHDGIIRRGAKLIFA 400 (530)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHH-------------HHTTHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCCC-CCccHHH-------------HHhhHHHHHHHHHHH
Confidence 3335553 23579999999999999877754 477777765433 4444332 123345667788899
Q ss_pred HhcCCCcEEEEEcCcccccccccccc-----cCeEEEeCceEEecccccccccCCCchHHHHhhc-ch------HH-HHH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIP-----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG------HL-GEF 192 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~-----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-~g------~~-a~~ 192 (288)
+.....|+|+.|-|.+.|||. ++++ .|+++|.+++.++. .++-|....+.+. +- .. -.+
T Consensus 401 ~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~~~~~ 472 (530)
T 3iav_A 401 YAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRAR 472 (530)
T ss_dssp HHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHHHHHH
T ss_pred HHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHHHHHH
Confidence 999999999999999998766 3333 79999988877763 3333333333221 10 00 011
Q ss_pred HH--hcCCCCCHHHHHHcCccceecCCCChhH
Q 023017 193 LA--LTGAKLNGAEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 193 l~--l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 222 (288)
+. +.-+.-++-.|.+.|+||.|+++.+...
T Consensus 473 ~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~ 504 (530)
T 3iav_A 473 LIQEYEDALLNPYTAAERGYVDAVIMPSDTRR 504 (530)
T ss_dssp HHHHHHHHHSSSHHHHHTTSSSEECCGGGHHH
T ss_pred HHHHHHHhcCCHHHHHhcCCCCcccCHHHHHH
Confidence 11 1111236677889999999999877554
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.024 Score=54.45 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++-...-.+.++..++. ++-+|.|.-. ..|..|.+- +.....+...+++..+..+..|.|+
T Consensus 387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt-pGf~~G~~a-------------E~~Gi~~~gAk~l~a~a~a~VP~it 451 (588)
T 3gf3_A 387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT-TGIDVGDEA-------------EKAELLGLGQSLIYSIENSKLPSLE 451 (588)
T ss_dssp TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHH-------------HHTTHHHHHHHHHHHHHHHCSCEEE
T ss_pred CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC-CCCCCCHHH-------------HHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 368899999999999888764 5777777654 334444222 2223356667888999999999999
Q ss_pred EEcCccccccccccccc-------CeEEEeCceEEecccccccccCCCchHHHHh-hcc------h-----------HHH
Q 023017 136 ILNGVTMGGGAGVSIPG-------TFRVACGKTVFATPETLIGFHPDAGASFYLS-HLP------G-----------HLG 190 (288)
Q Consensus 136 av~G~a~GgG~~lal~~-------D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~~~------g-----------~~a 190 (288)
.|-|.+.|||.. ++++ |+++|.+++.++ +.++-|....+. +.+ | ...
T Consensus 452 vI~g~~~Ggg~~-am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (588)
T 3gf3_A 452 ITIRKASAAAHY-VLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI 523 (588)
T ss_dssp EESSEEETTHHH-HTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred EEcCCccHHHHH-HhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHH
Confidence 999999887763 3332 377777777666 433333333332 211 1 001
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
.++- +..++-.|.+.|+||.|+++.+.......+
T Consensus 524 ~~y~---~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~ 557 (588)
T 3gf3_A 524 QMYT---DKSRPKYCTEKGMVDEIVDMTEVRPYIQAF 557 (588)
T ss_dssp HHHH---HTTSHHHHHHTTSSSEECCGGGHHHHHHHH
T ss_pred HHHH---HhCCHHHHHhcCCCCeeeCHHHHHHHHHHH
Confidence 1221 235788888999999999998765544333
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=95.97 E-value=0.095 Score=49.96 Aligned_cols=145 Identities=11% Similarity=-0.017 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++......+.++..++ .++-+|.|.-.++ |..|.+- +.....+.+.+++..+..+..|+|+
T Consensus 366 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtpG-f~~G~~~-------------E~~Gi~~~gAk~~~a~~~a~vP~it 430 (555)
T 3u9r_B 366 GILFAEAAQKGAHFIELACQ-RGIPLLFLQNITG-FMVGQKY-------------EAGGIAKHGAKLVTAVACARVPKFT 430 (555)
T ss_dssp SSBCHHHHHHHHHHHHHHHH-HTCCEEEEEEECC-BCCSHHH-------------HHTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred CccCHHHHHHHHHHHHHHhc-CCCCEEEEecCcC-CCCCHHH-------------HHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 56999999999999888875 3477788776543 3333221 1122345567788889999999999
Q ss_pred EEcCcccccccccc----cccCeEEEeCceEEecccccccccCCCchHHHHh---hc----ch----H--H-HH--HHH-
Q 023017 136 ILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLS---HL----PG----H--L-GE--FLA- 194 (288)
Q Consensus 136 av~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~---~~----~g----~--~-a~--~l~- 194 (288)
.|-|.+.|||..-. +.+|+++|.+++.++. ..+-|....|. +. .| . . +. ++.
T Consensus 431 vi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 503 (555)
T 3u9r_B 431 VLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILE 503 (555)
T ss_dssp EEEEEEETTHHHHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred EEeCCccchhhHhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHH
Confidence 99999988865432 3479999988887773 22233333222 10 00 0 0 00 000
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhH
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 222 (288)
.--+..++-.|...|+||.|+++.+-..
T Consensus 504 ~y~~~~~p~~aa~r~~vD~vIdP~~TR~ 531 (555)
T 3u9r_B 504 QYEHQGHPYYSSARLWDDGVIDPAQTRE 531 (555)
T ss_dssp HHHHHHSHHHHHHTTSSSCBCCGGGHHH
T ss_pred HHHHhCCHHHHhhccccCcccChHHHHH
Confidence 0011246666778899999998877544
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0095 Score=58.43 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=49.4
Q ss_pred CCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCC--CHHHH-
Q 023017 129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL--NGAEM- 205 (288)
Q Consensus 129 ~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~--~a~eA- 205 (288)
...|+|+.|.|+|.|||..+...||++|+.+++.+. + . |+.+.+- .+|+.+ +.++.
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~if-------l---t----------GP~vIk~-~tGeeV~~s~eeLG 303 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII-------L---T----------GAPAINK-MLGREVYTSNLQLG 303 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEE-------S---S----------CHHHHHH-HHTSCCCSCTHHHH
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEE-------E---e----------CHHHHHH-HhCCccccCchhcc
Confidence 568999999999999999999999999999976322 2 1 1111111 245555 43332
Q ss_pred -----HHcCccceecCCCC
Q 023017 206 -----MACGLATHYSVSEK 219 (288)
Q Consensus 206 -----~~~Glv~~vv~~~~ 219 (288)
...|++|.++++|.
T Consensus 304 GA~vh~~sGvad~va~dd~ 322 (758)
T 3k8x_A 304 GTQIMYNNGVSHLTAVDDL 322 (758)
T ss_dssp SHHHHTTTTSSSEEESSHH
T ss_pred hhhHHHhcCCeeEEecCHH
Confidence 36899999998754
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.019 Score=56.82 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCcccccccccccccCeEEEeCceEEe
Q 023017 129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164 (288)
Q Consensus 129 ~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~ 164 (288)
...|+|+.|.|+|.|||..++..||++|+.+++.+.
T Consensus 258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ 293 (793)
T 2x24_A 258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHII 293 (793)
T ss_dssp HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEE
T ss_pred CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEE
Confidence 369999999999999999999999999999886544
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.39 Score=47.16 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++....-.+.++..++..++-+|.|.-. ..|..|.+- +.....+...+++..+..+..|+|+
T Consensus 447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt-pGf~~G~~a-------------E~~Gi~k~gAkll~A~a~a~VP~it 512 (758)
T 3k8x_A 447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRD-------------MFNEVLKYGSFIVDALVDYKQPIII 512 (758)
T ss_dssp TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC-CEECCSHHH-------------HHTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC-CCCCCCHHH-------------HHccHHHHHHHHHHHHHhCCCCEEE
Confidence 46899999999999999887456777766543 345555332 2223456677889999999999999
Q ss_pred EEc--Ccccccccccccc----cCe--EEEeCceEEec
Q 023017 136 ILN--GVTMGGGAGVSIP----GTF--RVACGKTVFAT 165 (288)
Q Consensus 136 av~--G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 165 (288)
.|- |.+.||++ ++++ +|+ ++|.+++.++.
T Consensus 513 VI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~isV 549 (758)
T 3k8x_A 513 YIPPTGELRGGSW-VVVDPTINADQMEMYADVNARAGV 549 (758)
T ss_dssp EECTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEES
T ss_pred EEecCCccchHHH-HHhCcccCCCHHHHhcCCCCEEEc
Confidence 998 99988776 4444 565 77766666653
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=2.2 Score=42.20 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++-.....+.+...++ .++-+|.|.-. ..|..|.+- +.....+...+++..+..+..|+|+
T Consensus 462 G~l~~~~a~KaarfI~~cd~-f~iPlv~LvDt-pGf~~G~~a-------------E~~Gi~~~gAkll~A~a~a~VP~it 526 (793)
T 2x24_A 462 QVWFPDSAYKTAQAIKDFNR-EKLPLMIFANW-RGFSGGMKD-------------MYDQVLKFGAYIVDGLRKYRQPVLI 526 (793)
T ss_dssp TEECHHHHHHHHHHHHHHHT-TTCCEEEECCB-CEECCSHHH-------------HHTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred CcccHHHHHHHHHHHHHhcc-CCCCEEEEecC-CCCCCCHHH-------------HHhhHHHHHHHHHHHHHhcCCCEEE
Confidence 36999999999999999974 55777777653 344444322 2223456677889999999999999
Q ss_pred EE--cCcccccccccc---cccCe--EEEeCceEEe
Q 023017 136 IL--NGVTMGGGAGVS---IPGTF--RVACGKTVFA 164 (288)
Q Consensus 136 av--~G~a~GgG~~la---l~~D~--~ia~~~a~f~ 164 (288)
.| .|.+.||++..+ +..|+ ++|.+++.++
T Consensus 527 vI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~ 562 (793)
T 2x24_A 527 YIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRAS 562 (793)
T ss_dssp EECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEE
T ss_pred EEecCCcccchhHHhhhcccCccHHHHhhhccCEEE
Confidence 99 898877655332 35676 6777666665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 288 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 6e-28 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 7e-19 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 3e-15 | |
| d1hzda_ | 266 | c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T | 3e-14 | |
| d2f6qa1 | 245 | c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C | 2e-13 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 5e-12 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 6e-11 | |
| d1nzya_ | 269 | c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps | 7e-10 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 1e-08 | |
| d2fw2a1 | 258 | c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum | 5e-07 | |
| d1sg4a1 | 249 | c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d | 6e-07 | |
| d2a7ka1 | 230 | c.14.1.3 (A:1-230) Carbapenem biosynthes protein C | 1e-05 | |
| d1szoa_ | 249 | c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus | 2e-05 | |
| d1wz8a1 | 263 | c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT | 4e-05 | |
| d1ef8a_ | 261 | c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc | 2e-04 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 106 bits (265), Expect = 6e-28
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP ALNAL + +LN+ + +E DP +G + + G +AF AG DI + +
Sbjct: 22 LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 77
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
+ S + KP +A +NG +GGG +++ A K F PE
Sbjct: 78 --FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI 135
Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACG 209
L+G P AG + L+ G L + LTG +++ + G
Sbjct: 136 LLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 81.7 bits (200), Expect = 7e-19
Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 1/167 (0%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
LN P N L+ M L + E DP + V + G G+AF AG D+ L G
Sbjct: 13 FLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELG 72
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
EE +L + + T+ KP VA +NG + GGAG+++ V + E
Sbjct: 73 A-EENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTE 131
Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214
IGF + + + + L LTG + E A GL
Sbjct: 132 VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.7 bits (174), Expect = 3e-15
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
LNRP NA+N +L + F+ D + V + G+G+ F +G D++ + + Q
Sbjct: 19 LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78
Query: 109 L-------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
+D ++ KP +A ++G +GGG + R
Sbjct: 79 GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH 188
F E +G D G L + G+
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGN 165
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (166), Expect = 3e-14
Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 3/170 (1%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
+NR N+L+ N+ L+K A ++D + + ++ G +
Sbjct: 21 INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGAD---LKERAKMS 77
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
E F + + I + P +A ++G+ +GGG +++ RVA ET
Sbjct: 78 SSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVET 137
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSE 218
+ P G + L G + A++ + + + +
Sbjct: 138 KLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (160), Expect = 2e-13
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
+ NRP NA+NT M ++ + KA D +I V + G+G + +G D+ + G
Sbjct: 17 MFNRPKKKNAINTEMYHEIMRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGG 75
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
E+ K+ L F+ KP +A++NG +G + A + F TP
Sbjct: 76 VEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPF 135
Query: 168 TLIGFHPDAGASFYLSH 184
+ +G P+ +S+
Sbjct: 136 SHLGQSPEGCSSYTFPK 152
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 62.8 bits (151), Expect = 5e-12
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 14/109 (12%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--- 105
NRP NA + +L ++ P++G V + G+G + GG
Sbjct: 35 FNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG 94
Query: 106 -----------QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMG 143
++ + + L+ K + ++NG G
Sbjct: 95 RSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAG 143
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.3 bits (142), Expect = 6e-11
Identities = 26/181 (14%), Positives = 46/181 (25%), Gaps = 9/181 (4%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
L P LNAL L +L + + + ++ F ++ SGR F +G D +
Sbjct: 20 LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 79
Query: 109 LEECK-------DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
+ +F H K + LNG +G A + +
Sbjct: 80 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 139
Query: 162 VFATPETLIGFHPD--AGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 219
V+ + + M G +
Sbjct: 140 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPS 199
Query: 220 L 220
Sbjct: 200 S 200
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Score = 56.3 bits (134), Expect = 7e-10
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 1/141 (0%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QG 107
+ P NAL+ ++ E D ++G V + G+ AFCAG + + G
Sbjct: 18 IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAG 77
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
+ + + I+ + +P +A +NGV GGG G+S+ + F
Sbjct: 78 VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 168 TLIGFHPDAGASFYLSHLPGH 188
IG D S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVGM 158
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 52.8 bits (125), Expect = 1e-08
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 1/135 (0%)
Query: 50 NRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL 109
+ ++N N +L + A + D ++ V + F G DI
Sbjct: 24 LKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDA 83
Query: 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL 169
E P VA +NG+ +GGG + + FRV PE
Sbjct: 84 ELI-AGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVK 142
Query: 170 IGFHPDAGASFYLSH 184
+G +P G + L
Sbjct: 143 LGIYPGFGGTVRLPR 157
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (111), Expect = 5e-07
Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 1/167 (0%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
+ R + NALNT + ++ + D + + C + H N
Sbjct: 17 LSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDR 76
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
+ T+ +F+ KP V +NG +G GA + A K F TP
Sbjct: 77 N-TASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPY 135
Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214
T G PD +S + G L + A
Sbjct: 136 TTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 182
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 47.1 bits (110), Expect = 6e-07
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 35 QVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFC 92
+VLVE A + +A+ P +N+L+ +L + END + V +
Sbjct: 3 RVLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVF 61
Query: 93 AGGDIVSLYHFMNQGKLEECKDFFRTLY 120
+ G ++ + + L+
Sbjct: 62 SAGLDLTEMCGRSPAHYAGYWKAVQELW 89
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Score = 43.3 bits (100), Expect = 1e-05
Identities = 7/58 (12%), Positives = 20/58 (34%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106
L+ P+ N + + + D ++ V + G + G + +++
Sbjct: 15 LDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSR 72
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Score = 42.8 bits (99), Expect = 2e-05
Identities = 13/82 (15%), Positives = 24/82 (29%)
Query: 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
+ +E + ++ + +L F D V + G+G +FC
Sbjct: 15 IRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEI 74
Query: 96 DIVSLYHFMNQGKLEECKDFFR 117
D S E + R
Sbjct: 75 DFTSFNLGTPHDWDEIIFEGQR 96
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Score = 41.8 bits (96), Expect = 4e-05
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
I R LNA+ + L ++++ E + V ++G G F AGG +
Sbjct: 23 ITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASH 82
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
+ F + +P VA + V +G
Sbjct: 83 E--ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGA 117
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (90), Expect = 2e-04
Identities = 9/58 (15%), Positives = 15/58 (25%)
Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106
N LNAL+ L + + SG + G + +
Sbjct: 19 FNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGR 76
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.47 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.43 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.32 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 98.22 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 98.1 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.99 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.84 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 97.84 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.78 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.74 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.69 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.58 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.31 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.2 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.08 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 97.0 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 96.49 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 96.12 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 94.24 |
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-57 Score=395.96 Aligned_cols=253 Identities=19% Similarity=0.286 Sum_probs=228.4
Q ss_pred CCcEEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln-~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++|.++++++|++|++| ||+++|++|.+|+.+|.++++.++.|+ +++|||+|.|+.||+|+|++++.....+.....
T Consensus 1 y~~i~v~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d~-~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 79 (258)
T d2fw2a1 1 YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTA 79 (258)
T ss_dssp CCSEEEEEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHH
T ss_pred CceEEEEEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCccccccccccchhhhcccccccch
Confidence 578999999999999998 689999999999999999999999874 699999999999999999999876544444445
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..++.+.+++++..+.++|||+||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 80 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a 159 (258)
T d2fw2a1 80 SLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASA 159 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred hhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcccc
Confidence 567778889999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+|+|++++.+.+..+ +++++.|+.+++.+|+.++......+++... +.+.+..++
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~ 239 (258)
T d2fw2a1 160 NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWS 239 (258)
T ss_dssp HHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998877777 8999999999999999998765444444433 356777777
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
++|..|++.+|+|||+|+|
T Consensus 240 s~d~~Egi~af~EKR~p~f 258 (258)
T d2fw2a1 240 SAQGIESMLKYVENKIDEF 258 (258)
T ss_dssp SHHHHHHHHHHHHSSCCCC
T ss_pred CHHHHHHHHHHhCCCCCCC
Confidence 6899999999999999998
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.7e-57 Score=397.77 Aligned_cols=251 Identities=23% Similarity=0.318 Sum_probs=225.3
Q ss_pred CCCcEEEEee---CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCC
Q 023017 32 LCNQVLVEGK---ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 32 ~~~~v~~~~~---~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 108 (288)
.|++|.++++ ++|++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.|++||+|.|++++... .
T Consensus 2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~----~ 77 (260)
T d1mj3a_ 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----T 77 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----C
T ss_pred CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhcc----c
Confidence 5789999987 48999999999999999999999999999999999999999999999999999999987531 1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
....+...+.+++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~ 155 (260)
T d1mj3a_ 78 --FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK 155 (260)
T ss_dssp --HHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred --hhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCH
Confidence 122344556677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~ 265 (288)
. +++++++|++++|+||+++|||+++++++++.+.+..+ .+++..++.++..+|+.+++......+.... +.+.+..
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~ 235 (260)
T d1mj3a_ 156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYS 235 (260)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8 99999999999999999999999999999998877777 8999999999999999999887766665544 3566667
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC-CC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY-AY 288 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~-~~ 288 (288)
++ ++|..|++.+|+|||+|+| +|
T Consensus 236 ~~~s~d~~egi~aFleKR~P~f~~~ 260 (260)
T d1mj3a_ 236 TFATDDRREGMSAFVEKRKANFKDH 260 (260)
T ss_dssp GGGSHHHHHHHHHHHTTSCCCCCCC
T ss_pred HhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 77 7899999999999999999 65
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-56 Score=393.69 Aligned_cols=253 Identities=16% Similarity=0.185 Sum_probs=229.0
Q ss_pred CCCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCCh
Q 023017 31 DLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 31 ~~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 109 (288)
..|+.+.++. ++||++|+| ||+|.|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|+|++++... ..+.
T Consensus 6 ~~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~--~~~~ 82 (263)
T d1wz8a1 6 ARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEM--RASH 82 (263)
T ss_dssp HHCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHH--HHCH
T ss_pred cCCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhh--cccc
Confidence 3577899987 678999999 78899999999999999999999999999999999999999999999998654 2234
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH
Q 023017 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 189 (288)
+...++....++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 83 ~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~ 162 (263)
T d1wz8a1 83 EALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA 162 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred cccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..||.+++.+|+.+++......+....+...+..++
T Consensus 163 ~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~~~K~~l~~~~~~~~~~~~~e~~~~~~~~ 242 (263)
T d1wz8a1 163 KAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRSFLPHFELSLALEFLGF 242 (263)
T ss_dssp HHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHGG
T ss_pred hhhhhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999888888 8999999999999999998765555555544555566666
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
++|..|++.+|+|||+|+|
T Consensus 243 ~s~d~~Egi~Af~eKR~P~f 262 (263)
T d1wz8a1 243 SGKELEEGLKALKEKRPPEF 262 (263)
T ss_dssp GSHHHHHHHHHHHTTSCCCC
T ss_pred cCHHHHHHHHHHhCCCCCCC
Confidence 7899999999999999998
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=2.3e-55 Score=387.55 Aligned_cols=255 Identities=18% Similarity=0.197 Sum_probs=227.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhc-cCChH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~ 110 (288)
||+.|.++.+|+|++||||||+++|++|.+|+.+|.++++.+++|+++++|||+|.|+.||+|+|++++..... ....+
T Consensus 1 my~~i~~~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (269)
T d1nzya_ 1 MYEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD 80 (269)
T ss_dssp CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999998742110 11122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+...++.++.++.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|+.|++|+++++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~ 160 (269)
T d1nzya_ 81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRR 160 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhh
Confidence 2334445577899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~ 267 (288)
+++++++|+.++|+||+++||||+|+|++++.+.+.++ ++++..|+.++..+|+.+++.....++...+. ...+..++
T Consensus 161 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 240 (269)
T d1nzya_ 161 AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASV 240 (269)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888777 89999999999999999998877666665543 55555566
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..|++.+|+|||+|+|
T Consensus 241 ~~~~~~e~v~aflekrkp~~ 260 (269)
T d1nzya_ 241 THPHFMPCLTRFLDGHRADR 260 (269)
T ss_dssp HSTTHHHHHHHHHTTCCTTC
T ss_pred cCHHHHHHHHHHHCCCCCCc
Confidence 7899999999999999998
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2e-54 Score=378.02 Aligned_cols=248 Identities=25% Similarity=0.266 Sum_probs=222.2
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.+++ |+|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|+..+.... ..+......+
T Consensus 2 v~ie~-G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~-~~~~~~~~~~ 79 (253)
T d1uiya_ 2 VQVEK-GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVT-ELGAEENYRH 79 (253)
T ss_dssp EEEEC-SSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHT-TSCHHHHHHH
T ss_pred EEEee-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhcc-ccCcccccch
Confidence 45663 789999999999999999999999999999999999999999999999999999999876542 3345556667
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
...++.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|. |++++|++++|.. |++|+
T Consensus 80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~ 158 (253)
T d1uiya_ 80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLL 158 (253)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHH
T ss_pred hhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHh
Confidence 777888999999999999999999999999999999999999999999999999998885 5688899999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCc
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDT 271 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 271 (288)
++|++++|+||+++||||+|+|++++.+.+.++ .+++..++.++..+|+.+++......+..+. +...+..++ ++|.
T Consensus 159 l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~ 238 (253)
T d1uiya_ 159 LTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDL 238 (253)
T ss_dssp HHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred hcCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999999999998888777 8999999999999999999877666665544 355566666 7899
Q ss_pred HHHHHHhhcCCCCCC
Q 023017 272 VEEIIDSLDDVAPSY 286 (288)
Q Consensus 272 ~e~~~~~lekr~p~~ 286 (288)
.|++.+|+|||+|+|
T Consensus 239 ~egi~af~eKR~P~f 253 (253)
T d1uiya_ 239 AEGIRAFFEKRPPRF 253 (253)
T ss_dssp HHHHHHHHTTSCCCC
T ss_pred HHHHHHHhCCCCCCC
Confidence 999999999999997
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.7e-53 Score=376.58 Aligned_cols=254 Identities=17% Similarity=0.234 Sum_probs=221.8
Q ss_pred CCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCC---
Q 023017 33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK--- 108 (288)
Q Consensus 33 ~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~--- 108 (288)
|+++.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+.||+|+|+.++........
T Consensus 2 y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~ 81 (275)
T d1dcia_ 2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD 81 (275)
T ss_dssp CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred CceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhccccccccc
Confidence 77888865 88999999999999999999999999999999999999999999999999999999998765432211
Q ss_pred h----HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhh
Q 023017 109 L----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184 (288)
Q Consensus 109 ~----~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 184 (288)
. .....+...+++++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~ 161 (275)
T d1dcia_ 82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK 161 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred ccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccccc
Confidence 1 123345556778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHH--HHHHHhcCCCCCHHHHHHcCccceecCCCC-hhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-H
Q 023017 185 LPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSEK-LPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-R 259 (288)
Q Consensus 185 ~~g~~--a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~-l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~ 259 (288)
++|.. +.+++++|+.++++||+++||||+|+|+++ +.+.+.++ .+++..+|.+++.+|+.+++.....+++... +
T Consensus 162 ~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e 241 (275)
T d1dcia_ 162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYM 241 (275)
T ss_dssp TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99954 578999999999999999999999999765 45555556 7899999999999999998776555555443 4
Q ss_pred HHHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 260 IDIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 260 ~~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
...+..++ ++|..|++.+|+|||+||+
T Consensus 242 ~~~~~~~~~~~d~~Egi~AfleKR~pk~ 269 (275)
T d1dcia_ 242 ATWNMSMLQTQDIIKSVQAAMEKKDSKS 269 (275)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 66777777 6789999999999999998
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-54 Score=380.46 Aligned_cols=248 Identities=17% Similarity=0.210 Sum_probs=214.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--GRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~--g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
|++|.++.+|+|++||||||+++|++|.+|+.+|.+++++++ ++++++|||+|. |++||+|+|++++..... +
T Consensus 3 ~~~i~~~~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~--~-- 77 (261)
T d1ef8a_ 3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGR--D-- 77 (261)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-------C--
T ss_pred CCEEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCc--c--
Confidence 678999999999999999999999999999999999999998 457999999986 479999999998764211 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
...+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++.+|..
T Consensus 78 -~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~ 156 (261)
T d1ef8a_ 78 -PLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI 156 (261)
T ss_dssp -TTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred -ccccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccc
Confidence 112344567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCC--hhhHHH-HHHHHHH
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPD--KNSVIH-RIDIVDK 265 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~--~~~~~~-~~~~~~~ 265 (288)
+++++++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...... .....+ ....+..
T Consensus 157 a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 236 (261)
T d1ef8a_ 157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRA 236 (261)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred cccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777 8999999999999999987553222 222222 2445566
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ ++|..|++.+|+|||+|+|
T Consensus 237 ~~~s~D~~Egi~AfleKR~P~f 258 (261)
T d1ef8a_ 237 VYDSEDYQEGMNAFLEKRKPNF 258 (261)
T ss_dssp HHTSHHHHHHHHHHHTTSCCCC
T ss_pred HhCCHHHHHHHHHHhCCCCCcC
Confidence 66 6899999999999999998
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-53 Score=373.76 Aligned_cols=242 Identities=19% Similarity=0.269 Sum_probs=217.7
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++.+.. ........+...+
T Consensus 13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~----~~~~~~~~~~~~~ 88 (266)
T d1hzda_ 13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAK----MSSSEVGPFVSKI 88 (266)
T ss_dssp GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTT----SCHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccccccccccc----ccchhhhhhhhHH
Confidence 467999999999999999999999999999999999999999999998 68999999998763 2345556677888
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~ 198 (288)
++++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. +++++++|+
T Consensus 89 ~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~ 168 (266)
T d1hzda_ 89 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR 168 (266)
T ss_dssp HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCHHHHHHcCccceecCCCChhH----HHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcCc
Q 023017 199 KLNGAEMMACGLATHYSVSEKLPL----IEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLDT 271 (288)
Q Consensus 199 ~~~a~eA~~~Glv~~vv~~~~l~~----~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~ 271 (288)
+++|+||+++||||++||++++.+ .+..+ ++++..+|.+++.+|+.+++............ ...+..++ ++|.
T Consensus 169 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~ 248 (266)
T d1hzda_ 169 VLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDR 248 (266)
T ss_dssp EEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHH
T ss_pred ccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999988643 33344 68889999999999999998776666655543 56677777 6899
Q ss_pred HHHHHHhhcCCCCCC
Q 023017 272 VEEIIDSLDDVAPSY 286 (288)
Q Consensus 272 ~e~~~~~lekr~p~~ 286 (288)
.|++.+|+|||+|+|
T Consensus 249 ~Eg~~AF~eKR~P~f 263 (266)
T d1hzda_ 249 LEGLLAFKEKRPPRY 263 (266)
T ss_dssp HHHHHHHTTTSCCCC
T ss_pred HHHHHHHhCCCCCCC
Confidence 999999999999998
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.5e-52 Score=374.43 Aligned_cols=255 Identities=16% Similarity=0.215 Sum_probs=206.8
Q ss_pred CCCcEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CcccccCChhhHHH
Q 023017 32 LCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-------RAFCAGGDIVSLYH 102 (288)
Q Consensus 32 ~~~~v~~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-------~~F~aG~Dl~~~~~ 102 (288)
.+..|.+++ +++|++||||||+++|++|.+|+.+|.++++++++|+++|+|||||.| +.||+|.|+.....
T Consensus 16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~ 95 (297)
T d1q52a_ 16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR 95 (297)
T ss_dssp TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence 456688876 589999999999999999999999999999999999999999999974 56777788875532
Q ss_pred hhcc-------CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccC
Q 023017 103 FMNQ-------GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHP 174 (288)
Q Consensus 103 ~~~~-------~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p 174 (288)
.... ...+........++++...+.++||||||+|||+|+|||++|+++||+||++++ +.|++||+++|++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p 175 (297)
T d1q52a_ 96 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD 175 (297)
T ss_dssp ----------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCC
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccccc
Confidence 1100 011122223344667888999999999999999999999999999999999875 57999999999999
Q ss_pred CCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCC
Q 023017 175 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPD 252 (288)
Q Consensus 175 ~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~ 252 (288)
++|++++|++++|.. +++++++|+.++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......
T Consensus 176 ~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~~~K~~~~~~~~~~ 255 (297)
T d1q52a_ 176 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDDGL 255 (297)
T ss_dssp CSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTHH
T ss_pred ccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHHHHHHHHHHhhcCh
Confidence 999999999999999 99999999999999999999999999999998877777 8999999999999999987754322
Q ss_pred hhhHHHHHHHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 253 KNSVIHRIDIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 253 ~~~~~~~~~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
......+.+.+..++ ++|..|++.+|+|||+|+|
T Consensus 256 ~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f 290 (297)
T d1q52a_ 256 VGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDW 290 (297)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCC
Confidence 222333344555566 6789999999999999999
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-52 Score=359.94 Aligned_cols=236 Identities=19% Similarity=0.235 Sum_probs=205.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
|++|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+.+ +||++|.|++||+|+|++++............
T Consensus 2 ~~~i~~~~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (245)
T d2f6qa1 2 FETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKA 80 (245)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHH
T ss_pred cceEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhccccccccccc
Confidence 67899999999999999999999999999999999999999999887 89999999999999999998653222223334
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+++++.++.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~ 160 (245)
T d2f6qa1 81 KNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT 160 (245)
T ss_dssp HHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred chhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhh
Confidence 45556678899999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHcCc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCFGL 269 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 269 (288)
+++++|++++|+||+++||||+++|++++++.+.++ ++++..||.+++.+|+.+++......+.... +.+.+..++.+
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 240 (245)
T d2f6qa1 161 EMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLS 240 (245)
T ss_dssp HHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999888787 8999999999999999998765544444333 35666677643
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=7.1e-50 Score=344.52 Aligned_cols=210 Identities=17% Similarity=0.223 Sum_probs=192.5
Q ss_pred EEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHH
Q 023017 37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 37 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
.-+.+|+|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|.|++++... ...+....+
T Consensus 3 ~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~---~~~~~~~~~ 79 (230)
T d2a7ka1 3 FEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQL---SRSEDIEEW 79 (230)
T ss_dssp EEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHHH
T ss_pred EEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhccccccccc---ccccccccc
Confidence 4466889999999999999999999999999999999999999999999987 799999999998753 234556677
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
...+.+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+ .+|++++|.. +++++
T Consensus 80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~ 158 (230)
T d2a7ka1 80 IDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEII 158 (230)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHH
T ss_pred hhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-cccccccccccccccc
Confidence 788899999999999999999999999999999999999999999999999999999998765 5799999998 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY 250 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~ 250 (288)
++|++++|+||+++||||+++|++++.+.+.++ ++++..||.+++.+|+.+++...
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~ 215 (230)
T d2a7ka1 159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKRAVNKPFI 215 (230)
T ss_dssp HHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998877777 89999999999999999987543
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=4.2e-49 Score=353.73 Aligned_cols=250 Identities=16% Similarity=0.166 Sum_probs=208.7
Q ss_pred CCcEEEEe-eCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEG-KANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~-~~~v~~i~ln-~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
++.+.+++ +++|++|+|| +|++.|++|.+|+.+|.++++.++.|+++++|||+|.|+.||+|+|++++....... ..
T Consensus 5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~~ 83 (310)
T d1wdka4 5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLP-DA 83 (310)
T ss_dssp CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSC-HH
T ss_pred CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhccccc-ch
Confidence 45788887 7889999998 788999999999999999999999999999999999999999999999987643222 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
........+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~ 163 (310)
T d1wdka4 84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN 163 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred hhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhh
Confidence 3334445677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHH-------------------------------
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSV------------------------------- 237 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~------------------------------- 237 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ +++++.++..
T Consensus 164 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (310)
T d1wdka4 164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAG 243 (310)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhhhhhh
Confidence 99999999999999999999999999999998888777 6776654321
Q ss_pred --------HHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhcCCC
Q 023017 238 --------IEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLDDVA 283 (288)
Q Consensus 238 --------~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~lekr~ 283 (288)
...+.+.+........+..+. +.+.+.+++ +++..+.+.+|++||.
T Consensus 244 ~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~ 299 (310)
T d1wdka4 244 QAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQE 299 (310)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred hccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence 111223333333334444433 466777777 6788888999998874
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-49 Score=347.33 Aligned_cols=218 Identities=16% Similarity=0.103 Sum_probs=191.3
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC----
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---- 107 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~---- 107 (288)
.++.|.++.+|+|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|.|++||+|+||+++.......
T Consensus 3 ~~e~i~~~~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 82 (266)
T d1pjha_ 3 QNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 82 (266)
T ss_dssp CBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred CCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999986432111
Q ss_pred ---ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeC-ceEEecccccccccCCCchHHHHh
Q 023017 108 ---KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLS 183 (288)
Q Consensus 108 ---~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~ 183 (288)
.......+...++.++..+.++||||||+|||+|+|||++|+++||+|||++ .++|++||+++|++|++|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~ 162 (266)
T d1pjha_ 83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLP 162 (266)
T ss_dssp SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccc
Confidence 1233455667778899999999999999999999999999999999999975 689999999999999999999999
Q ss_pred hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhH------HHHHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 184 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPL------IEEEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 184 ~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~------~~~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
+++|.. +++|+++|+.++|+||+++||||+|+++++... .+..+ .++...++.++..+|+.++...
T Consensus 163 r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~ 236 (266)
T d1pjha_ 163 LKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNH 236 (266)
T ss_dssp HHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTT
T ss_pred cccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999 999999999999999999999999998766432 23345 5677789999999999987654
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=7e-49 Score=342.15 Aligned_cols=232 Identities=16% Similarity=0.166 Sum_probs=201.8
Q ss_pred CcEEEEee--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccccCChhhHHHhhccCChH
Q 023017 34 NQVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 34 ~~v~~~~~--~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+.|.++.+ +||++||||||+ +|++|.+|+.+|.++++.+++|+++++|||+|.|+ +||+|.|++++.. ....
T Consensus 2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~----~~~~ 76 (249)
T d1sg4a1 2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPA 76 (249)
T ss_dssp CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHH
T ss_pred CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccc----cccc
Confidence 35666665 679999999996 79999999999999999999999999999999985 7999999998753 3456
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEE--ecccccccccCCCchHHHHhhcchH
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF--ATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f--~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
....+...+++++.++.++|||+||+|||+|+|||++|+++|||||++++++| ++||+++|++|++|++++|++++|.
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~ 156 (249)
T d1sg4a1 77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGH 156 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCH
T ss_pred cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccccccccccccccccccccccc
Confidence 67778888999999999999999999999999999999999999999999876 7899999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhh-HHHHHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNS-VIHRIDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~-~~~~~~~~~~ 265 (288)
. +++++++|++++|++|+++||||+++|++++++.+.++ ++++..|+.+++.+|+.+++.....+.. ...+.+.+..
T Consensus 157 ~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~ 236 (249)
T d1sg4a1 157 RAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVS 236 (249)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999998887777 8999999999999999998754332222 2222444445
Q ss_pred HcCcC
Q 023017 266 CFGLD 270 (288)
Q Consensus 266 ~~~~~ 270 (288)
.++++
T Consensus 237 ~~~~e 241 (249)
T d1sg4a1 237 FISKD 241 (249)
T ss_dssp HHTSH
T ss_pred HhCCH
Confidence 44443
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=2.6e-48 Score=338.46 Aligned_cols=214 Identities=16% Similarity=0.221 Sum_probs=198.9
Q ss_pred CCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 31 ~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
..|++|.++++|+|++||||+|++.|++|.+|+.+|.++++.+++|+++++|||+|.|++||+|.|++++. ..+.+
T Consensus 10 ~~y~~i~~~~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~----~~~~~ 85 (249)
T d1szoa_ 10 QKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFN----LGTPH 85 (249)
T ss_dssp TSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSC----CSSHH
T ss_pred CCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhh----ccccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999874 34556
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEe-cccccccccCCCchHHHHhhcchHH
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPETLIGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~-~pe~~~Gl~p~~g~~~~l~~~~g~~ 189 (288)
...++...+++++..+.++||||||+++|+|. ||++|+++||+||++++++|. +||+++|++|++|++++|++++|..
T Consensus 86 ~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~ 164 (249)
T d1szoa_ 86 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN 164 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHH
T ss_pred chhhhhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCcc
Confidence 67777888899999999999999999999885 577999999999999999985 7999999999999999999999999
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
+++++++|++++++||+++||||+|+|++++.+.+.++ ++++..|+.+++.+|+.+++..
T Consensus 165 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 226 (249)
T d1szoa_ 165 RGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTRQL 226 (249)
T ss_dssp HHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSHHH
T ss_pred ceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777 8999999999999999998654
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=2.7e-07 Score=74.25 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
+|.++...+...+..++.++..+ .+.|.+.| +|+..- ..++..+..++.|+..
T Consensus 25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G------G~v~~g-------------------~~i~d~i~~~~~~v~t 79 (183)
T d1yg6a1 25 VEDHMANLIVAQMLFLEAENPEKDIYLYINSPG------GVITAG-------------------MSIYDTMQFIKPDVST 79 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred ECHHHHHHHHHHHHHhhhhccCCceEEEEeCCC------ccHHHH-------------------HHHHHHHHhCCCCEEE
Confidence 78889999888888776433222 23445554 333221 1355567788999999
Q ss_pred EEcCcccccccccccccC--eEEEeCceEEecccccccccCCCchHHHHh------------------hcchH--H-HHH
Q 023017 136 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFYLS------------------HLPGH--L-GEF 192 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~~g~--~-a~~ 192 (288)
.+.|.|.+.|..+.+++| .|++.++++|.+.+...|.. |...-+. +..|. . -.+
T Consensus 80 v~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~ 156 (183)
T d1yg6a1 80 ICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIER 156 (183)
T ss_dssp EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred EEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999988 79999999999988876653 2221111 11111 1 233
Q ss_pred HHhcCCCCCHHHHHHcCccceecCC
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
++-.-..++|+||+++||||+|+..
T Consensus 157 ~~~~d~~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 157 DTERDRFLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp HTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred HhccCccccHHHHHHcCCCcEEecc
Confidence 3333455899999999999999864
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.43 E-value=8.2e-07 Score=71.08 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 58 LNTNMGAKLNKLFKAWEND---PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d---~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
+|.++..++...|..++.+ +.+. +.|.+.|+...+|. .++..+..++.|+.
T Consensus 22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~GG~v~~gl-------------------------~i~d~i~~~~~~v~ 75 (179)
T d2cbya1 22 VNDEIANRLCAQILLLAAEDASKDIS-LYINSPGGSISAGM-------------------------AIYDTMVLAPCDIA 75 (179)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECCBCHHHHH-------------------------HHHHHHHHCSSCEE
T ss_pred ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeCCCCCHHHHH-------------------------HHHHHHHhhcccee
Confidence 7888888888876555432 2333 44455444333331 24455667899999
Q ss_pred EEEcCcccccccccccccC--eEEEeCceEEecccccccccCCCchHHH---------------HhhcchH--H-HHHHH
Q 023017 135 AILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFY---------------LSHLPGH--L-GEFLA 194 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~---------------l~~~~g~--~-a~~l~ 194 (288)
..+.|.|.+.|..+.+++| .|++.++++|.+.+...|..-...-..- +.+..|. . -...+
T Consensus 76 t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~ 155 (179)
T d2cbya1 76 TYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS 155 (179)
T ss_dssp EEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred eehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence 9999999999999999999 8999999999998876555221110000 0111121 1 23334
Q ss_pred hcCCCCCHHHHHHcCccceecCC
Q 023017 195 LTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
-....++|+||+++||||+|+..
T Consensus 156 ~~d~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 156 DRDRWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp HTTCEEEHHHHHHHTSCSEECSC
T ss_pred cCCceecHHHHHHcCCCcEEecC
Confidence 56677999999999999999864
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.32 E-value=2.7e-06 Score=68.70 Aligned_cols=144 Identities=13% Similarity=0.110 Sum_probs=93.0
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP---NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR 117 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~---~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 117 (288)
++++..|. .| +|.++...+...+..++.++ .+. +.|.+.|+...+|.
T Consensus 23 ~~rii~l~--g~-----I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~GG~v~~gl---------------------- 72 (192)
T d1y7oa1 23 KDRIIMLT--GP-----VEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPGGSVSAGL---------------------- 72 (192)
T ss_dssp HTTEEEEE--SC-----BCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECCBCHHHHH----------------------
T ss_pred ccCEEEEC--CE-----EchHHHHHHHHHHHHhhhhcccCcee-eeecCCCCCHHHHH----------------------
Confidence 46666543 33 78888888888777665322 343 44466554443331
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccccccccccc--cCeEEEeCceEEecccccccccCCCchH--H----HH-------
Q 023017 118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP--GTFRVACGKTVFATPETLIGFHPDAGAS--F----YL------- 182 (288)
Q Consensus 118 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~--~D~~ia~~~a~f~~pe~~~Gl~p~~g~~--~----~l------- 182 (288)
.++..+..++.|+...+.|.|.+.|..|+++ +|.|++.++++|.+.....|..-..... . .+
T Consensus 73 ---ai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i 149 (192)
T d1y7oa1 73 ---AIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTL 149 (192)
T ss_dssp ---HHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHH
T ss_pred ---HHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHH
Confidence 3455677789999999999999999888765 6899999999999998876663321111 0 01
Q ss_pred ----hhcchH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 023017 183 ----SHLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 183 ----~~~~g~--~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
....|. . ..+.+-....++|+||+++||||+|+..
T Consensus 150 ~~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 150 EKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred HHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence 111121 1 2344456677999999999999999864
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=98.22 E-value=5.2e-06 Score=66.86 Aligned_cols=134 Identities=14% Similarity=0.088 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHhcC--CCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 58 LNTNMGAKLNKLFKAWEND--PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d--~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
+|.++..++...+..++.. +.+. +.|.+.| +|+... ..++..+..++.|+..
T Consensus 27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~INS~G------G~v~~g-------------------~ai~d~i~~~~~~v~t 80 (190)
T d2f6ia1 27 INKKTADELISQLLYLDNINHNDIK-IYINSPG------GSINEG-------------------LAILDIFNYIKSDIQT 80 (190)
T ss_dssp BCHHHHHHHHHHHHHHHHHCCSCEE-EEEEECC------BCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred eCHHHHHHHHHHHHHHhccCCCCeE-EEEeCch------hhhhHH-------------------HHHHHHHHhhCCceEE
Confidence 7888888888888777642 3343 3344444 333221 1244556678999999
Q ss_pred EEcCcccccccccccccC--eEEEeCceEEecccccccccCCCchH----H-----------HHhhcchHH---HHHHHh
Q 023017 136 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS----F-----------YLSHLPGHL---GEFLAL 195 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~----~-----------~l~~~~g~~---a~~l~l 195 (288)
.+.|.|.+.|..+++++| .|++.++++|-+.....|..-...-. . .+.+..|.. -.+.+-
T Consensus 81 v~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~ 160 (190)
T d2f6ia1 81 ISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSD 160 (190)
T ss_dssp EEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred EEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcc
Confidence 999999999999999988 69999999999999877663211100 0 111112211 222333
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
.-..++|+||+++||||+|+.+
T Consensus 161 ~d~~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 161 RDYYMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp TTCEECHHHHHHHTSCSEECCC
T ss_pred CCeeecHHHHHHcCCCcEEccc
Confidence 4566999999999999999965
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.10 E-value=1.2e-05 Score=64.90 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=94.8
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWEND---PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR 117 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d---~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 117 (288)
++++..|. . -+|.++...+...+..++.+ ..+. +.|.+.|+.+.+|.
T Consensus 25 ~~Riifl~--g-----~I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~GG~v~~g~---------------------- 74 (193)
T d1tg6a1 25 RERIVCVM--G-----PIDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTAGL---------------------- 74 (193)
T ss_dssp TTTEEEEE--S-----SBCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECCBCHHHHH----------------------
T ss_pred ccCEEEEC--C-----EEchHHHHHHHHHHHHhcccCCCcEEE-EEeecCcccHHHHH----------------------
Confidence 45665543 3 27888888888777666632 2343 34466554443331
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccccccccccccC--eEEEeCceEEecccccccccCCCchHHHHh------------
Q 023017 118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFYLS------------ 183 (288)
Q Consensus 118 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------ 183 (288)
.++..+..++.|+...+.|.|.+.|..|.+++| .|++.++++|.+.....|.. |-..-+.
T Consensus 75 ---~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~---G~~~di~~~~~el~~~~~~ 148 (193)
T d1tg6a1 75 ---AIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR---GQATDIAIQAEEIMKLKKQ 148 (193)
T ss_dssp ---HHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC---SSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCC---cCHHHHHHHHHHHHHHHHH
Confidence 345567778999999999999999999999999 59999999999998876652 2211111
Q ss_pred ------hcchH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 023017 184 ------HLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 184 ------~~~g~--~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
...|. . ...++-.-.-++|+||+++||||+|+..
T Consensus 149 i~~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~~ 191 (193)
T d1tg6a1 149 LYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH 191 (193)
T ss_dssp HHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred HHHHHHHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEccC
Confidence 11111 1 2333334455999999999999999854
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=1.6e-05 Score=68.61 Aligned_cols=136 Identities=12% Similarity=0.010 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaa 136 (288)
.++++-...-.+.++.+++- ++-+|-|--.+++++. .+ .+.....+.+.+.+..+..+..|+|+.
T Consensus 131 ~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG~~~g-~~-------------~E~~g~~~~~a~~~~~~~~~~vP~i~v 195 (316)
T d2f9ya1 131 MPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYPG-VG-------------AEERGQSEAIARNLREMSRLGVPVVCT 195 (316)
T ss_dssp CCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCCS-HH-------------HHHTTHHHHHHHHHHHHHTCSSCEEEE
T ss_pred cccHHHHHHHHHHHHHHHHc-CcceEEEEecCcccCC-cc-------------cccccHHHHHHHHHHHHHhCCCceEEE
Confidence 47888888888888888765 4666666554443332 11 111223456667888899999999999
Q ss_pred EcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceec
Q 023017 137 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYS 215 (288)
Q Consensus 137 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv 215 (288)
|-|.+.|||......+|.+.+.+++.++. +.|.++++.++...--.. +.+. .++++++++++|+||+|+
T Consensus 196 v~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeII 265 (316)
T d2f9ya1 196 VIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSII 265 (316)
T ss_dssp EEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCC
T ss_pred EEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhcc
Confidence 99999999998888899999999999982 466666555443332222 3333 358899999999999999
Q ss_pred CC
Q 023017 216 VS 217 (288)
Q Consensus 216 ~~ 217 (288)
+.
T Consensus 266 ~E 267 (316)
T d2f9ya1 266 PE 267 (316)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.84 E-value=0.00017 Score=60.53 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=88.6
Q ss_pred eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p-~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
++.-..|.-++. =+.-+++....+.+.++.+.+.++. +-+|.|.-. +|..+.+-... ... ...+
T Consensus 86 ~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~ds-----gGarm~e~~~~--------~~~-~~~~ 150 (258)
T d1xnya1 86 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDS-----GGARIQEGVAS--------LGA-YGEI 150 (258)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-----CSBCGGGTHHH--------HHH-HHHH
T ss_pred CCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecC-----CCcccCccccc--------ccc-hhHH
Confidence 343333333443 3667899999999999999998764 667777774 44444332111 111 1112
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeC-ceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~ 198 (288)
......+ ....|+|+++.|+|.||+......||++|+.+ ++.+++. | ...+ + ..+|+
T Consensus 151 ~~~~~~~-s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~a----------G-P~vv---------~-~~~ge 208 (258)
T d1xnya1 151 FRRNTHA-SGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT----------G-PDVI---------K-TVTGE 208 (258)
T ss_dssp HHHHHHT-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS----------C-HHHH---------H-HHHCC
T ss_pred HHHHHHH-cCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEec----------C-HHHH---------H-HHhcC
Confidence 2222222 34699999999999999999999999998876 4444321 1 1111 1 14577
Q ss_pred CCCHHHH-------HHcCccceecCCC
Q 023017 199 KLNGAEM-------MACGLATHYSVSE 218 (288)
Q Consensus 199 ~~~a~eA-------~~~Glv~~vv~~~ 218 (288)
.++.+|+ ..-|++|.+++++
T Consensus 209 ~i~~eelgga~~h~~~sG~~d~v~~de 235 (258)
T d1xnya1 209 DVGFEELGGARTHNSTSGVAHHMAGDE 235 (258)
T ss_dssp CCCHHHHHBHHHHHHTSSCCSEEESSH
T ss_pred ccChHHhccHHHHHhcCCeeEEEeCCH
Confidence 7887775 4579999999765
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=97.84 E-value=0.00017 Score=60.31 Aligned_cols=129 Identities=13% Similarity=0.172 Sum_probs=84.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 133 (288)
+.-+++....+.+..+.+.+.++. +-+|.+.- |+|..+.+-. .....+.+.+.. ..++.. ..|+
T Consensus 101 ~GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~--------~~l~~~~~~~~~-~~~ls~-~vP~ 164 (253)
T d1on3a1 101 MGGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGI--------DSLSGYGKMFFA-NVKLSG-VVPQ 164 (253)
T ss_dssp GGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTH--------HHHHHHHHHHHH-HHHHTT-TSCE
T ss_pred hcccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCcccccc--------eeccccceehHH-HHHHhc-cceE
Confidence 667899999999999999998764 45666654 4455554311 111112222222 233333 5899
Q ss_pred EEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHH-------H
Q 023017 134 VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEM-------M 206 (288)
Q Consensus 134 Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA-------~ 206 (288)
|+++.|+|.||+.....+||++|+.+++.+++.- ...+.. -+|+.++.+|. .
T Consensus 165 i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG-----------P~vVe~----------~~ge~~~~eelGga~~h~~ 223 (253)
T d1on3a1 165 IAIIAGPCAGGASYSPALTDFIIMTKKAHMFITG-----------PQVIKS----------VTGEDVTADELGGAEAHMA 223 (253)
T ss_dssp EEEEEEEEESGGGHHHHHSSEEEEETTCEEESSC-----------HHHHHH----------HHCCCCCHHHHHSHHHHHH
T ss_pred EEEEecCcccceeeccchhhheeccccceEEecC-----------cchhhh----------hhCCcCChHhccCHHHhhh
Confidence 9999999999999999999999999877665321 111111 23566665533 3
Q ss_pred HcCccceecCCCC
Q 023017 207 ACGLATHYSVSEK 219 (288)
Q Consensus 207 ~~Glv~~vv~~~~ 219 (288)
+.|.+|.++++++
T Consensus 224 ~sG~iD~v~~~e~ 236 (253)
T d1on3a1 224 ISGNIHFVAEDDD 236 (253)
T ss_dssp TTCCCSEEESSHH
T ss_pred ccccceEEECCHH
Confidence 5799999998865
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=0.0001 Score=62.11 Aligned_cols=137 Identities=12% Similarity=0.134 Sum_probs=84.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 133 (288)
..-+++....+.+.++++.+.++. +-+|.++- |+|..+.+-.. ... ...........+.....|+
T Consensus 108 ~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~-----sgG~r~~e~~~--------sl~-~~~~~~~~~~~~~~~~vP~ 172 (263)
T d2f9yb1 108 MGGSMGSVVGARFVRAVEQALEDN-CPLICFSA-----SGGARMQEALM--------SLM-QMAKTSAALAKMQERGLPY 172 (263)
T ss_dssp TTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEE-----ESSBCGGGTHH--------HHH-HHHHHHHHHHHHHHTTCCE
T ss_pred hccccccchhhHHhHHHHHHHHcC-CCeEEEec-----CCCcccccccc--------hhh-cchhHHHHHHHHHhCCCce
Confidence 667899999999999999988654 55666665 45555543211 111 1222223344455678999
Q ss_pred EEEEcCccccccc-ccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHHHHcCccc
Q 023017 134 VAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 212 (288)
Q Consensus 134 Iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA~~~Glv~ 212 (288)
|+++.|+|.||+. .+++++|++++.+++.+++..- .......| .. +.-+--+++-..+.|.||
T Consensus 173 I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP-----------~vve~~~g---e~--~~e~~g~a~~~~~~G~iD 236 (263)
T d2f9yb1 173 ISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP-----------RVIEQTVR---EK--LPPGFQRSEFLIEKGAID 236 (263)
T ss_dssp EEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH-----------HHHHHHHT---SC--CCTTTTBHHHHGGGTCCS
T ss_pred EEEecCCcchHHHhhhhhcCceEeeecceeeeccCH-----------HHHhhhcC---Cc--CChhhccHHHHHhCCCCC
Confidence 9999999999876 4777888888877776654211 11111111 11 111222444445789999
Q ss_pred eecCCCChh
Q 023017 213 HYSVSEKLP 221 (288)
Q Consensus 213 ~vv~~~~l~ 221 (288)
.++++++..
T Consensus 237 ~vv~~ee~~ 245 (263)
T d2f9yb1 237 MIVRRPEMR 245 (263)
T ss_dssp EECCHHHHH
T ss_pred EEECCHHHH
Confidence 999866543
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.74 E-value=0.00039 Score=57.95 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=88.5
Q ss_pred CCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHH
Q 023017 42 ANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (288)
Q Consensus 42 ~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (288)
+.-..|.-+.+. +.-+++......+.++.+.+.++. +-+|.|.. |+|..+.+-.. ......+ +.
T Consensus 85 G~~v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~d-----sgG~r~~e~~~--------~l~~~~~-~~ 149 (251)
T d1vrga1 85 GRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVD--------ALAGYGE-IF 149 (251)
T ss_dssp TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHH--------HHHHHHH-HH
T ss_pred cEEEEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCcccccccc--------ccccchH-HH
Confidence 333333444443 567889988999999999888664 45666665 45555543211 1111111 11
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCC
Q 023017 121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK 199 (288)
Q Consensus 121 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~ 199 (288)
.... ...-..|+|+++.|+|.||+......||++|+.++ +.+ ++ .| ++++ +. .+|+.
T Consensus 150 ~~~~-~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i-------~~---aG-----p~vv-----~~-~~ge~ 207 (251)
T d1vrga1 150 LRNT-LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARM-------FI---TG-----PNVI-----KA-VTGEE 207 (251)
T ss_dssp HHHH-HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBC-------BS---SC-----HHHH-----HH-HHCCC
T ss_pred HHHH-HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeE-------Ee---cC-----chhh-----hh-hcCCc
Confidence 1222 23457999999999999999999999999999763 332 22 11 1111 11 45788
Q ss_pred CCHHHH-------HHcCccceecCCC
Q 023017 200 LNGAEM-------MACGLATHYSVSE 218 (288)
Q Consensus 200 ~~a~eA-------~~~Glv~~vv~~~ 218 (288)
++.+|. .+-|++|.+++++
T Consensus 208 ~~~eelGga~~h~~~sG~~D~v~~de 233 (251)
T d1vrga1 208 ISQEDLGGAMVHNQKSGNAHFLADND 233 (251)
T ss_dssp CCHHHHHBHHHHHHTSCCCSEEESSH
T ss_pred CChHHccchhhhhhccccceEEECCH
Confidence 888775 4579999999875
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.69 E-value=0.00053 Score=57.30 Aligned_cols=141 Identities=14% Similarity=0.142 Sum_probs=88.7
Q ss_pred eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p-~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
++.-..|.-+.. -+.-++++...+.+.++.+.+.++. +-+|.|.- |+|..+.+-.. .... ...+
T Consensus 87 ~G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~d-----sgGar~~eg~~--------~~~~-~~~~ 151 (258)
T d2a7sa1 87 DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGVV--------SLGL-YSRI 151 (258)
T ss_dssp SSSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGCTH--------HHHH-HHHH
T ss_pred ccceEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEec-----cCCcccccccc--------cccc-hhhH
Confidence 444444444443 3677899999999999999998765 56666665 44444433110 0111 1112
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeC-ceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~ 198 (288)
..... ......|+|+++.|+|.||+......||++|+.+ .+.+. + . |+..-+. .+|+
T Consensus 152 ~~~~~-~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~-------~---a----------GP~vV~~-~~ge 209 (258)
T d2a7sa1 152 FRNNI-LASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMF-------I---T----------GPDVIKT-VTGE 209 (258)
T ss_dssp HHHHH-HHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCB-------S---S----------CHHHHHH-HHCC
T ss_pred HHHHH-HHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEE-------c---c----------ChhHHHH-hcCC
Confidence 22222 3345699999999999999999999999999876 34333 2 1 1110111 3677
Q ss_pred CCCHHHH-------HHcCccceecCCC
Q 023017 199 KLNGAEM-------MACGLATHYSVSE 218 (288)
Q Consensus 199 ~~~a~eA-------~~~Glv~~vv~~~ 218 (288)
.++.+|. .+.|.+|.+++++
T Consensus 210 ~~~~eeLGga~~h~~~sG~~D~v~~de 236 (258)
T d2a7sa1 210 EVTMEELGGAHTHMAKSGTAHYAASGE 236 (258)
T ss_dssp CCCHHHHHBHHHHHHTSCCCSEEESSH
T ss_pred ccChhhccCHhHhhhhccccceEeCCH
Confidence 8877754 4579999999865
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.58 E-value=0.00027 Score=60.14 Aligned_cols=169 Identities=15% Similarity=0.091 Sum_probs=94.5
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-|.+. +.-++++...+.+.++++.+.+.. +-+|.|.- |+|+.+..-..... ......+.+. -...
T Consensus 108 v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~d-----s~Ga~~~~~~e~~~--~~~~~g~~~~----~~a~ 175 (287)
T d1pixa2 108 VVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYP--NRRGGGTPFF----RNAE 175 (287)
T ss_dssp EEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSS--STTSTTHHHH----HHHH
T ss_pred EEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEec-----CCcccCCcchhhcc--chhhHHHHHH----HHHH
Confidence 3444443 556888999999999999888654 56676665 44444432111100 0000011111 1233
Q ss_pred HhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecc--cccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP--ETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNG 202 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p--e~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a 202 (288)
+.....|+|++|-|+|.|||...+++||++++.+++.+.+. .+--+..+..+........+... ... .+-+.+.+
T Consensus 176 ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge~--~~~eeLGG 253 (287)
T d1pixa2 176 LNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRT--GKTEPPGA 253 (287)
T ss_dssp HHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTT--CCCCCSSB
T ss_pred HhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhccc--cccccccc
Confidence 56678999999999999999888888888888888877663 22223333322211111111111 111 23344445
Q ss_pred HHH--HHcCccceecCCCChhHHHHHHHHhh
Q 023017 203 AEM--MACGLATHYSVSEKLPLIEEELGKLV 231 (288)
Q Consensus 203 ~eA--~~~Glv~~vv~~~~l~~~~~~~~~l~ 231 (288)
.+. ...|++|.++++++ +....++++.
T Consensus 254 a~~H~~~sG~~d~v~~~e~--~ai~~~r~~l 282 (287)
T d1pixa2 254 VDIHYTETGFMREVYASEE--GVLEGIKKYV 282 (287)
T ss_dssp HHHHTTTSCCSCEEESSHH--HHHHHHHHHH
T ss_pred HHHhhhhcccceeecCCHH--HHHHHHHHHH
Confidence 543 35699999998753 3344444443
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.0018 Score=54.38 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=101.5
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|...-|.-|++. ..-.++++......+.++..+.. ++-+|.|.-. ..|..|.+ .+.....+..
T Consensus 68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~-------------~E~~g~~~~g 132 (271)
T d2a7sa2 68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTD-------------QEYNGIIRRG 132 (271)
T ss_dssp SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHH-------------HHHHCHHHHH
T ss_pred CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhcc-------------HHHhhHHHHH
Confidence 4444444456654 23579999999999999988754 5778887664 23333322 2223345667
Q ss_pred HHHHHHHhcCCCcEEEEEcCccccccccc----ccccCeEEEeCceEEecccccccccCCCchHHHHhh-cchHH-----
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGV----SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHL----- 189 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~l----al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-~~g~~----- 189 (288)
.+++..+..+..|.|+.|-|.++|+|... .+.+|++++.+++.++. .++-++...+.+ .+...
T Consensus 133 a~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~ 205 (271)
T d2a7sa2 133 AKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGE 205 (271)
T ss_dssp HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSC
T ss_pred HHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhccc
Confidence 78999999999999999999999987542 23578998888887764 222222222222 11110
Q ss_pred -------HHHHHhcCCCCCHHHHHHcCccceecCCCChhHH
Q 023017 190 -------GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLI 223 (288)
Q Consensus 190 -------a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 223 (288)
....-.....-++-.+.+.|++|.|+++.+..+.
T Consensus 206 ~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~ 246 (271)
T d2a7sa2 206 DIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGY 246 (271)
T ss_dssp CTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHH
Confidence 0111112233466778889999999998775543
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=0.0019 Score=53.97 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=97.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-|+|. ....++++......+.++..+.. ++-.|.|.-. ..|..|.+- +.....+...+++..
T Consensus 71 vian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~-------------E~~g~~~~ga~~~~a 135 (264)
T d1vrga2 71 IVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQ-------------EHGGIIRHGAKLLYA 135 (264)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHH-------------HHTTHHHHHHHHHHH
T ss_pred EEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHH-------------HHHhHHHHHHHHHHH
Confidence 4445554 33569999999999999988864 4677777653 223333222 222345667789999
Q ss_pred HhcCCCcEEEEEcCcccccccccc----cccCeEEEeCceEEecccccccccCCCchHHHHhh-cchH-----H-HHHH-
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGH-----L-GEFL- 193 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-~~g~-----~-a~~l- 193 (288)
+..+..|.|+.|-|.++|+|..-. +.+|++++.+++.++. ..+-++...+.+ .+-. . ..++
T Consensus 136 ~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~~~~~~~ 208 (264)
T d1vrga2 136 YSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETRRKLI 208 (264)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHHHHHH
T ss_pred HhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHHHHHHHH
Confidence 999999999999999999876322 3589998888877763 222222222221 1100 0 0000
Q ss_pred -HhcCCCCCHHHHHHcCccceecCCCChhH
Q 023017 194 -ALTGAKLNGAEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 194 -~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 222 (288)
.+.-+.-++-.+...|++|.|+++.+...
T Consensus 209 ~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~ 238 (264)
T d1vrga2 209 EEYKQQFANPYIAASRGYVDMVIDPRETRK 238 (264)
T ss_dssp HHHHHHTSSHHHHHHTTSSSEECCGGGHHH
T ss_pred HHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence 01112235778889999999999877544
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.08 E-value=0.0019 Score=53.90 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=96.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-|+|. ...+++++......+.++..+.. ++-+|.|.-.++ |-.|.+- +.....+...+++..
T Consensus 69 via~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~pG-f~~G~~~-------------E~~g~~~~ga~~~~a 133 (263)
T d1xnya2 69 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQ-------------EHDGIIRRGAKLIFA 133 (263)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHH-------------HHTTHHHHHHHHHHH
T ss_pred EEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecccc-cccchhH-------------HHHhHHHHHHHHHHH
Confidence 4445553 34689999999999999988865 467777766422 3333222 222345677789999
Q ss_pred HhcCCCcEEEEEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHHhhcch-----------HH-
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-----------HL- 189 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g-----------~~- 189 (288)
+..+..|.|+.|-|.++|+|..... ..|+++|.+++.++.- ++-++...+-+.-. ..
T Consensus 134 ~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm-------~pe~aa~il~~~~~~~a~~~~~~~~~~~ 206 (263)
T d1xnya2 134 YAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVM-------GAQGAVNILHRRTIADAGDDAEATRARL 206 (263)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTHHHHHSCCTTCSSSHHHH
T ss_pred HHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhcc-------CHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 9999999999999999998765432 4688988888777642 22223332221110 00
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 222 (288)
..++. -...++-.+...|++|.|+++.+...
T Consensus 207 ~~~~~--~~~~~p~~aA~~g~iD~VIdP~dTR~ 237 (263)
T d1xnya2 207 IQEYE--DALLNPYTAAERGYVDAVIMPSDTRR 237 (263)
T ss_dssp HHHHH--HHHSSSHHHHHHTSSSEECCGGGHHH
T ss_pred HHHHH--HHhcCHHHHHHcccCCcccCHHHHHH
Confidence 11110 11234567788899999999887654
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=97.00 E-value=0.004 Score=51.91 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=97.0
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.=|+|. ...+++++-.....+.++..++- ++-+|.|.-. ..|..|.+- +.....+...+++..
T Consensus 71 vian~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~-------------E~~g~i~~ga~~~~a 135 (264)
T d1on3a2 71 IVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQ-------------EYGGIIRHGAKMLYA 135 (264)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHH-------------HHTTHHHHHHHHHHH
T ss_pred EEeccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHH-------------HHHHHHHHHHHHHHH
Confidence 3345554 45679999999999999888863 5777777764 234444322 222345677789999
Q ss_pred HhcCCCcEEEEEcCcccccccccc----cccCeEEEeCceEEecccccccccCCCchHHHHhh-cch----HHH--HH-H
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPG----HLG--EF-L 193 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-~~g----~~a--~~-l 193 (288)
+.++..|.|+.|-|.++|+|..-. ...|++++.+++.++ ..++-|+...+-+ ... ... .+ +
T Consensus 136 ~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~~~~ 208 (264)
T d1on3a2 136 YSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKI 208 (264)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHH
T ss_pred HHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence 999999999999999999876433 346788877777665 3333333333322 110 000 00 0
Q ss_pred -HhcCCCCCHHHHHHcCccceecCCCChhH
Q 023017 194 -ALTGAKLNGAEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 194 -~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 222 (288)
-...+.-++-.+...|++|+|+++.+...
T Consensus 209 ~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~ 238 (264)
T d1on3a2 209 EEYQNAFNTPYVAAARGQVDDVIDPADTRR 238 (264)
T ss_dssp HHHHHHHSSHHHHHHTTSSSEECCGGGHHH
T ss_pred HHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence 01111234667788999999998877544
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.0013 Score=56.60 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=54.3
Q ss_pred CCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCC--CHHH--
Q 023017 129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL--NGAE-- 204 (288)
Q Consensus 129 ~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~--~a~e-- 204 (288)
-..|+|++|.|+|+|+|..++..||++|+.+++.+.+.. ...+.. .+|+.+ +.+|
T Consensus 239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltG-----------p~~l~~----------~lG~eVy~s~~eLG 297 (333)
T d1uyra1 239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTG-----------APAINK----------MLGREVYTSNLQLG 297 (333)
T ss_dssp HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSC-----------HHHHHH----------HSSSCCCSCTHHHH
T ss_pred CCCCEEEEEeCCccccceeecccccEEEEeCCceEEeeC-----------HHHHHH----------hcCccccCChhHhC
Confidence 469999999999999999999999999999977654321 122222 234444 3222
Q ss_pred ----HHHcCccceecCCCChhHHHHHHHHhh
Q 023017 205 ----MMACGLATHYSVSEKLPLIEEELGKLV 231 (288)
Q Consensus 205 ----A~~~Glv~~vv~~~~l~~~~~~~~~l~ 231 (288)
..+-|+++.++++|. +....+.++.
T Consensus 298 G~~i~~~nGv~h~~a~dd~--eai~~i~~~L 326 (333)
T d1uyra1 298 GTQIMYNNGVSHLTAVDDL--AGVEKIVEWM 326 (333)
T ss_dssp SHHHHHHHTSSSEEESSHH--HHHHHHHHHH
T ss_pred CHhHHhhCCCceEEeCCHH--HHHHHHHHHH
Confidence 346899999998753 4444444443
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=96.12 E-value=0.052 Score=45.68 Aligned_cols=152 Identities=17% Similarity=0.061 Sum_probs=91.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-+++++......+.++..++. ++-+|.|.-. ..|-.|.+-+ .....+...+++..+..+..|.|
T Consensus 96 ~G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E-------------~~g~~r~ga~~~~a~~~~~VP~i 160 (299)
T d1pixa3 96 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAE-------------KAELLGLGQSLIYSIQTSHIPQF 160 (299)
T ss_dssp TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCCCEE
T ss_pred CCccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHH-------------hhhHHHHHHHHHHHHHhhcceeE
Confidence 3568899999999999988865 4667777553 2244442221 12235666788899999999999
Q ss_pred EEEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHH-hhcchHH-----------H--HHHHh-
Q 023017 135 AILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHL-----------G--EFLAL- 195 (288)
Q Consensus 135 aav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l-~~~~g~~-----------a--~~l~l- 195 (288)
+.|-|.++|+|..... ..|++++ +..|...+|+.++-++...+ .+.+... . .++.-
T Consensus 161 svi~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~ 235 (299)
T d1pixa3 161 EITLRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA 235 (299)
T ss_dssp EEECSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred EEEecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999998864332 2343332 12244444554443333333 2221110 0 11100
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHHHH
Q 023017 196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~ 226 (288)
.-+.-++-.+...|+||.|+++.+.......
T Consensus 236 ~~~~~sp~~aAs~~~iD~IIDP~dTR~~L~~ 266 (299)
T d1pixa3 236 FYTKSRPKVCAELGLVDEIVDMNKIRGYVEA 266 (299)
T ss_dssp HHHTTSHHHHHHHTSSSEECCTTTHHHHHHH
T ss_pred HHHhcCHHHHHHhCCcCeeECHHHHHHHHHH
Confidence 0123567778899999999999886654433
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=0.084 Score=45.89 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.+.++....-.+.+..+.+..++-+|+|.-. ..|+.|-+-.. ...++...+++..+..+..|+|.
T Consensus 108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pGF~~G~~~E~-------------~gilr~GA~iv~A~~~~~vP~i~ 173 (404)
T d1uyra2 108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDMF-------------NEVLKYGSFIVDALVDYKQPIII 173 (404)
T ss_dssp TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CCBCC-------------------CTHHHHHHHHHHHHHTCCSCEEE
T ss_pred CccCchHHHHHHHHHHHhhhccccceEEeecC-CcccCcHHHHH-------------HHHHHHHHHHHHHHHhcCCCEEE
Confidence 35778888888999987776666777776654 66777753321 22345566788899999999999
Q ss_pred EE--cCccccccccccc---ccCe--EEEeCceEEecccccccccCCCchHHHH
Q 023017 136 IL--NGVTMGGGAGVSI---PGTF--RVACGKTVFATPETLIGFHPDAGASFYL 182 (288)
Q Consensus 136 av--~G~a~GgG~~lal---~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l 182 (288)
.| .|.+.||++.++- ..|. ++|.+ ..+.|+.++-|+...+
T Consensus 174 vI~~~g~~~GGa~vv~~~~~~~~~~~~yAwP-------~a~~gVm~pEGav~I~ 220 (404)
T d1uyra2 174 YIPPTGELRGGSWVVVDPTINADQMEMYADV-------NARAGVLEPQGMVGIK 220 (404)
T ss_dssp EECTTCEEEHHHHHTTCGGGGTTTEEEEEET-------TCEEESSCHHHHHHHH
T ss_pred EEeCCcccchhhhhcccCccCCccceEEECC-------ccccccCChhhhhhhe
Confidence 99 6777776554432 2222 34444 4555565555555444
|