Citrus Sinensis ID: 023046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEccccHHcccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHcccccccccccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEEEccHHHHHHccccccccHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccccccccEEEEEcccccccEcccccccccccccccccccHHHHHHHcccccccccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
myrdrgggaskseivagpldrKRINDALDKhlektspstsralsskdkerlsvpstsagksqldhrdsrsaslpknkcsdeesetdseesdvsgsdgddtsWISWFCNlrgneffcevddeyiqddfnlcglssqvpyydYALDLILDVesshgdmfTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKyknydfgrcprvyccgqpclpvgqsdiprsstvkiycpkcediyyprskyqgnidgayfgttfphlflmtyghlkpqkatqsyvprvfgfklhkp
Flexible Loop (DISEMBL)
myrdrgggaskseivagpldrKRINDALdkhlektspstsralsskdkerlsvpstsagksqldhrdsrsaslpknkcsdeesetdseesdvsgsdgdDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLpvgqsdiprsstVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Low Complexity Region (SEG)
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCsdeesetdseesdvsgsdgddtsWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Disordered region (IsUnstruct)
****************************************************************************************************SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFK****
Disordered Region (DISOPRED)
*************************DALDK***********************************************************************WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK*
Disordered Region (DISEMBL)
**********KSEIVAGPLDRKRINDALDKHL*****************************************************************DDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Disordered Region (DISPRO)
******************LDRKRINDALDKHLE*****************************************************************DTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
P40228	287	Casein kinase II subunit	yes	no	0.972	0.975	0.803	1e-132
O80507	283	Putative casein kinase II	no	no	0.947	0.964	0.778	1e-131
P40229	282	Casein kinase II subunit	no	no	0.968	0.989	0.762	1e-127
O81275	276	Casein kinase II subunit	no	no	0.895	0.934	0.766	1e-119
P28021	215	Casein kinase II subunit	N/A	no	0.666	0.893	0.583	8e-67
Q91398	215	Casein kinase II subunit	yes	no	0.666	0.893	0.583	8e-67
P67874	215	Casein kinase II subunit	yes	no	0.666	0.893	0.583	9e-67
P67873	215	Casein kinase II subunit	yes	no	0.666	0.893	0.583	9e-67
P67872	215	Casein kinase II subunit	yes	no	0.666	0.893	0.583	9e-67
P67871	215	Casein kinase II subunit	yes	no	0.666	0.893	0.583	9e-67

>sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1

 Score =  472 bits (1214), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/295 (80%), Positives = 259/295 (87%), Gaps = 15/295 (5%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
           MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A  
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANL 52

Query: 59  -GKSQ---LDHRDSRSASLPKNK-CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
            GK Q   ++HRDSRSASL KN   SD+ES+TDSEESDVSGSDG+DTSWISWFCNLRGNE
Sbjct: 53  IGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNE 112

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFTEEQNEL+ESAAEMLY
Sbjct: 113 FFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLY 172

Query: 174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
           GLIH RYILTSKG+AAML+KYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKC
Sbjct: 173 GLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKC 232

Query: 234 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct: 233 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|O80507|CSK2E_ARATH Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/293 (77%), Positives = 251/293 (85%), Gaps = 20/293 (6%)

Query: 1   MYRDRGGGASKS-------EIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSV 53
           MY+DR GG           EI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  SV
Sbjct: 1   MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SV 58

Query: 54  PSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
           PSTS  KSQL  R             D ES+TDSE SDVSGS+GDDTSWISWFCNLRGNE
Sbjct: 59  PSTSTAKSQLHSRSP-----------DVESDTDSEGSDVSGSEGDDTSWISWFCNLRGNE 107

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQ+E+VESAAEMLY
Sbjct: 108 FFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLY 167

Query: 174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
           GLIHVRYILT+KGMAAM+EKYKNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKC
Sbjct: 168 GLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKC 227

Query: 234 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 286
           EDIYYPRSKYQGNIDGAYFGTTFPHLFLM YG++KPQK  Q+YVP++FGFK+H
Sbjct: 228 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 280

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Arabidopsis thaliana (taxid: 3702)

>sp|P40229|CSK2C_ARATH Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/291 (76%), Positives = 245/291 (84%), Gaps = 12/291 (4%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RG   SKSE+V    DRKRIN+  D       PS S +     K +++  S   GK
Sbjct: 1   MYRERGMVGSKSEVV----DRKRINEIHDNR-----PSHSMSQPVNGKGKVTSTSVLMGK 51

Query: 61  SQL-DHRDSRSASLPKNKCSD--EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCE 117
            QL D   SRS S+ K   SD  + S+TDSEES+VSGSDG+DTSWISWFCNLRGNEFFCE
Sbjct: 52  QQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCE 111

Query: 118 VDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIH 177
           VDD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+IH
Sbjct: 112 VDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIH 171

Query: 178 VRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 237
            R+ILTSKG+A+ML+KYKNYDFGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCPKCED+Y
Sbjct: 172 ARFILTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVY 231

Query: 238 YPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           YPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA+QSY  RVFGFKLHKP
Sbjct: 232 YPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Arabidopsis thaliana (taxid: 3702)

>sp|O81275|CSK2D_ARATH Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/278 (76%), Positives = 238/278 (85%), Gaps = 20/278 (7%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTS--RALSSKDKERLSVPSTSAGKSQLDHRDSRS 70
           EI+ G +DRKRINDAL+K LEK+S ST+  R  SSKDK+  S  ST   K+QL       
Sbjct: 17  EILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFTST---KTQL------- 66

Query: 71  ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLC 130
                    D ESETDSE SDVSGS+GDDTSWISWFCNLRGN+FFCEVD++YIQDDFNLC
Sbjct: 67  --------PDVESETDSEGSDVSGSEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLC 118

Query: 131 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAM 190
           GLS QVPYYDYALDLILDV++S+ +MFT+EQ+E+VESAAEMLYGLIHVRYILT+KGMAAM
Sbjct: 119 GLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAM 178

Query: 191 LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGA 250
            EKYKN DFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKCEDI YPRSK+QGNIDGA
Sbjct: 179 TEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDISYPRSKFQGNIDGA 238

Query: 251 YFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           YFGTTFPHLFLMTYG+LKPQK TQSYVP++FGFK+HKP
Sbjct: 239 YFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP 276

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P28021|CSK2B_XENLA Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1

 Score =  253 bits (647), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 274
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 275 SYVPRVFGFKLH 286
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Xenopus laevis (taxid: 8355)

>sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1

 Score =  253 bits (647), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 274
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 275 SYVPRVFGFKLH 286
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Danio rerio (taxid: 7955)

>sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1

 Score =  253 bits (647), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 274
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 275 SYVPRVFGFKLH 286
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Rattus norvegicus (taxid: 10116)

>sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1

 Score =  253 bits (647), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 274
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 275 SYVPRVFGFKLH 286
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Oryctolagus cuniculus (taxid: 9986)

>sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1

 Score =  253 bits (647), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 274
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 275 SYVPRVFGFKLH 286
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Sus scrofa (taxid: 9823)

>sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1

 Score =  253 bits (647), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 142/192 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 274
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 275 SYVPRVFGFKLH 286
            +VPR++GFK+H
Sbjct: 182 QFVPRLYGFKIH 193

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Participates in Wnt signaling.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
225453309	288	PREDICTED: putative casein kinase II sub	1.0	1.0	0.958	1e-155
21261784	280	protein kinase Ck2 regulatory subunit 2	0.968	0.996	0.916	1e-151
147801660	282	hypothetical protein VITISV_022015 [Viti	0.979	1.0	0.937	1e-150
449442327	295	PREDICTED: putative casein kinase II sub	0.986	0.962	0.915	1e-144
224137102	300	predicted protein [Populus trichocarpa]	0.958	0.92	0.929	1e-142
224063639	301	predicted protein [Populus trichocarpa]	0.958	0.916	0.919	1e-142
297790971	283	hypothetical protein ARALYDRAFT_494272 [	0.972	0.989	0.817	1e-133
15238013	287	casein kinase 2 subunit beta [Arabidopsi	0.972	0.975	0.803	1e-131
297828187	283	hypothetical protein ARALYDRAFT_483599 [	0.947	0.964	0.781	1e-129
339777579	301	casein kinase II beta subunit [Populus b	0.958	0.916	0.860	1e-129

>gi|225453309|ref|XP_002269020.1| PREDICTED: putative casein kinase II subunit beta-4 isoform 1 [Vitis vinifera] gi|297734650|emb|CBI16701.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/288 (95%), Positives = 285/288 (98%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTS+ LSSKDKERLSVPSTSAGK
Sbjct: 1   MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKGLSSKDKERLSVPSTSAGK 60

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           SQLDHRD+R+ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD
Sbjct: 61  SQLDHRDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY
Sbjct: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180

Query: 181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240
           ILTSKGM+AMLEKYK+YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR
Sbjct: 181 ILTSKGMSAMLEKYKSYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240

Query: 241 SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA QSYVPRVFGFK+HKP
Sbjct: 241 SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAAQSYVPRVFGFKIHKP 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21261784|emb|CAD32500.1| protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/287 (91%), Positives = 271/287 (94%), Gaps = 8/287 (2%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYRDRGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTSRA   KDK   +VPSTSAGK
Sbjct: 1   MYRDRGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSRAF--KDK---AVPSTSAGK 55

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           S   H D R+    KNKCSD+ESETDSEESDVSGSDG+DTSWISWFCNLRGNEFFCEVDD
Sbjct: 56  SHQHHPDHRAT---KNKCSDDESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDD 112

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY
Sbjct: 113 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 172

Query: 181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240
           ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR
Sbjct: 173 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 232

Query: 241 SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 287
           SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK+TQ+YVPRVFGFKLHK
Sbjct: 233 SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKSTQNYVPRVFGFKLHK 279

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801660|emb|CAN72327.1| hypothetical protein VITISV_022015 [Vitis vinifera]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/288 (93%), Positives = 279/288 (96%), Gaps = 6/288 (2%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTS+ LSSKDKERLSVPSTSAGK
Sbjct: 1   MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKGLSSKDKERLSVPSTSAGK 60

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           SQLDHRD+R+ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD
Sbjct: 61  SQLDHRDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSH      EQNELVESAAEMLYGLIHVRY
Sbjct: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSH------EQNELVESAAEMLYGLIHVRY 174

Query: 181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240
           ILTSKGM+AMLEKYK+YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR
Sbjct: 175 ILTSKGMSAMLEKYKSYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 234

Query: 241 SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA QSYVPRVFGFK+HKP
Sbjct: 235 SKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAAQSYVPRVFGFKIHKP 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442327|ref|XP_004138933.1| PREDICTED: putative casein kinase II subunit beta-4-like [Cucumis sativus] gi|449505605|ref|XP_004162519.1| PREDICTED: putative casein kinase II subunit beta-4-like [Cucumis sativus]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/295 (91%), Positives = 274/295 (92%), Gaps = 11/295 (3%)

Query: 1   MYRDRGGG--------ASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLS 52
           MYRDRGGG        +SKSEIV   LDRKRINDALDKHLEKTSPSTSR L SK+KERLS
Sbjct: 1   MYRDRGGGGGGGGIGGSSKSEIVGATLDRKRINDALDKHLEKTSPSTSRGLHSKEKERLS 60

Query: 53  VPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN 112
           VPSTS GK QLDHR   SASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN
Sbjct: 61  VPSTSTGKPQLDHR---SASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN 117

Query: 113 EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML 172
           EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML
Sbjct: 118 EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML 177

Query: 173 YGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPK 232
           YGLIHVRYILT KG++AMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPK
Sbjct: 178 YGLIHVRYILTGKGISAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPK 237

Query: 233 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 287
           CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ YVPRVFGFKLHK
Sbjct: 238 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQGYVPRVFGFKLHK 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137102|ref|XP_002327022.1| predicted protein [Populus trichocarpa] gi|222835337|gb|EEE73772.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/285 (92%), Positives = 268/285 (94%), Gaps = 9/285 (3%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKS-----QLDH 65
           EIV G LDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS      L+H
Sbjct: 16  EIVGGQLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSSQHQQHLEH 75

Query: 66  R--DSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI 123
              DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI
Sbjct: 76  HRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI 135

Query: 124 QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT 183
           QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT
Sbjct: 136 QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT 195

Query: 184 SKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKY 243
           SKGM+AMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKY
Sbjct: 196 SKGMSAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKY 255

Query: 244 QGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           QGNIDGAYFGTTFPHLFLMTYGHLKPQKA QSYVPRVFGFKLHKP
Sbjct: 256 QGNIDGAYFGTTFPHLFLMTYGHLKPQKAIQSYVPRVFGFKLHKP 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063639|ref|XP_002301241.1| predicted protein [Populus trichocarpa] gi|222842967|gb|EEE80514.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/286 (91%), Positives = 266/286 (93%), Gaps = 10/286 (3%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKSQLD------ 64
           +IV GPLDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS         
Sbjct: 16  DIVGGPLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSLQHHQQQLD 75

Query: 65  --HRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 122
               DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY
Sbjct: 76  HHRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 135

Query: 123 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 182
           IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL
Sbjct: 136 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 195

Query: 183 TSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 242
           TSKGM+AMLEKYKNYDFGRCPRVYCCGQPC PVGQSDIPRSSTVKIYCPKCEDIYYPRSK
Sbjct: 196 TSKGMSAMLEKYKNYDFGRCPRVYCCGQPCFPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 255

Query: 243 YQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           YQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Sbjct: 256 YQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790971|ref|XP_002863370.1| hypothetical protein ARALYDRAFT_494272 [Arabidopsis lyrata subsp. lyrata] gi|297309205|gb|EFH39629.1| hypothetical protein ARALYDRAFT_494272 [Arabidopsis lyrata subsp. lyrata]

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/291 (81%), Positives = 255/291 (87%), Gaps = 11/291 (3%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDK-ERLSVPSTSAG 59
           MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K    +  S   G
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTAATANSVLIG 52

Query: 60  KSQ-LDHRDSRSASLPKNK-CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCE 117
           K Q  DHRDSRSASL KN   SD+ES+TDSEESDVSGSDG+DTSWISWFCNLRGNEFFCE
Sbjct: 53  KQQSHDHRDSRSASLSKNNNVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCE 112

Query: 118 VDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIH 177
           VDD+YIQDDFNLCGLSS VPYY+YALDLILDVESSHG+MFTEEQNEL+ESAAEMLYGLIH
Sbjct: 113 VDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSHGEMFTEEQNELIESAAEMLYGLIH 172

Query: 178 VRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 237
            RYILTSKG+AAML+KYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKCEDIY
Sbjct: 173 ARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIY 232

Query: 238 YPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           YPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct: 233 YPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPSKATQNYVQRVFGFKLHKP 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238013|ref|NP_199519.1| casein kinase 2 subunit beta [Arabidopsis thaliana] gi|729880|sp|P40228.1|CSK2B_ARATH RecName: Full=Casein kinase II subunit beta; Short=CK II beta gi|468264|gb|AAA53233.1| casein kinase II beta subunit CKB1 [Arabidopsis thaliana] gi|8978075|dbj|BAA98103.1| casein kinase II beta chain [Arabidopsis thaliana] gi|332008083|gb|AED95466.1| casein kinase 2 subunit beta [Arabidopsis thaliana]

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/295 (80%), Positives = 259/295 (87%), Gaps = 15/295 (5%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
           MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A  
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANL 52

Query: 59  -GKSQ---LDHRDSRSASLPKNK-CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
            GK Q   ++HRDSRSASL KN   SD+ES+TDSEESDVSGSDG+DTSWISWFCNLRGNE
Sbjct: 53  IGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNE 112

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFTEEQNEL+ESAAEMLY
Sbjct: 113 FFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLY 172

Query: 174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
           GLIH RYILTSKG+AAML+KYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKC
Sbjct: 173 GLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKC 232

Query: 234 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct: 233 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828187|ref|XP_002881976.1| hypothetical protein ARALYDRAFT_483599 [Arabidopsis lyrata subsp. lyrata] gi|297327815|gb|EFH58235.1| hypothetical protein ARALYDRAFT_483599 [Arabidopsis lyrata subsp. lyrata]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 250/293 (85%), Gaps = 20/293 (6%)

Query: 1   MYRDRGGGASKS-------EIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSV 53
           MY+DR GG           EI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  S 
Sbjct: 1   MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SF 58

Query: 54  PSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
           PSTS  KSQL  R             D ESETDSE SDVSGS+GDDTSWISWFCNLRGNE
Sbjct: 59  PSTSTAKSQLHSRSP-----------DVESETDSEGSDVSGSEGDDTSWISWFCNLRGNE 107

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQNE+VESAAEMLY
Sbjct: 108 FFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQNEMVESAAEMLY 167

Query: 174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
           GLIHVRYILT+KGMAAM+EKYKNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKC
Sbjct: 168 GLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKC 227

Query: 234 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 286
           EDIYYPRSKYQGNIDGAYFGTTFPHLFLM YG++KPQK  Q+YVP++FGFK+H
Sbjct: 228 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPVQNYVPKIFGFKVH 280

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339777579|gb|AEK05627.1| casein kinase II beta subunit [Populus balsamifera] gi|339777581|gb|AEK05628.1| casein kinase II beta subunit [Populus balsamifera] gi|339777583|gb|AEK05629.1| casein kinase II beta subunit [Populus balsamifera] gi|339777585|gb|AEK05630.1| casein kinase II beta subunit [Populus balsamifera] gi|339777587|gb|AEK05631.1| casein kinase II beta subunit [Populus balsamifera] gi|339777589|gb|AEK05632.1| casein kinase II beta subunit [Populus balsamifera] gi|339777591|gb|AEK05633.1| casein kinase II beta subunit [Populus balsamifera] gi|339777593|gb|AEK05634.1| casein kinase II beta subunit [Populus balsamifera] gi|339777595|gb|AEK05635.1| casein kinase II beta subunit [Populus balsamifera] gi|339777597|gb|AEK05636.1| casein kinase II beta subunit [Populus balsamifera] gi|339777599|gb|AEK05637.1| casein kinase II beta subunit [Populus balsamifera] gi|339777601|gb|AEK05638.1| casein kinase II beta subunit [Populus balsamifera] gi|339777603|gb|AEK05639.1| casein kinase II beta subunit [Populus balsamifera] gi|339777605|gb|AEK05640.1| casein kinase II beta subunit [Populus balsamifera] gi|339777607|gb|AEK05641.1| casein kinase II beta subunit [Populus balsamifera] gi|339777609|gb|AEK05642.1| casein kinase II beta subunit [Populus balsamifera] gi|339777611|gb|AEK05643.1| casein kinase II beta subunit [Populus balsamifera]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/286 (86%), Positives = 249/286 (87%), Gaps = 10/286 (3%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKSQLD------ 64
           +IV GPLDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS         
Sbjct: 16  DIVGGPLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSLQHHQQQLD 75

Query: 65  --HRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 122
               DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY
Sbjct: 76  HHRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 135

Query: 123 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 182
           IQDDFNLCGLSSQVPYYDYALDLI                 LVESAAEMLYGLIHVRYIL
Sbjct: 136 IQDDFNLCGLSSQVPYYDYALDLIXXXXXXXXXXXXXXXXXLVESAAEMLYGLIHVRYIL 195

Query: 183 TSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 242
           TSKGM+AMLEKYKNYDFGRCPRVYCCGQPC PVGQSDIPRSSTVKIYCPKCEDIYYPRSK
Sbjct: 196 TSKGMSAMLEKYKNYDFGRCPRVYCCGQPCFPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 255

Query: 243 YQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
           YQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP
Sbjct: 256 YQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 301

Source: Populus balsamifera

Species: Populus balsamifera

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2042431	283	CKB4 "casein kinase II beta su	0.947	0.964	0.737	8.2e-115
TAIR|locus:2152002	287	CKB1 "casein kinase II beta ch	0.972	0.975	0.735	1.5e-113
TAIR|locus:2129316	282	CKB2 "casein kinase II beta ch	0.961	0.982	0.709	3e-108
TAIR|locus:2081937	276	CKB3 "casein kinase II beta ch	0.944	0.985	0.678	6.7e-104
UNIPROTKB|Q5SRQ6	234	CSNK2B "Casein kinase II subun	0.729	0.897	0.533	4.8e-62
UNIPROTKB|P67869	215	CSNK2B "Casein kinase II subun	0.642	0.860	0.594	7.9e-62
UNIPROTKB|P67868	215	CSNK2B "Casein kinase II subun	0.642	0.860	0.594	7.9e-62
UNIPROTKB|P67870	215	CSNK2B "Casein kinase II subun	0.642	0.860	0.594	7.9e-62
UNIPROTKB|K7GQK6	235	CSNK2B "Casein kinase II subun	0.642	0.787	0.594	7.9e-62
UNIPROTKB|P67872	215	CSNK2B "Casein kinase II subun	0.642	0.860	0.594	7.9e-62

TAIR|locus:2042431 CKB4 "casein kinase II beta subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 216/293 (73%), Positives = 241/293 (82%)

Query:     1 MYRDR-------GGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSV 53
             MY+DR       GGG+S+SEI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  SV
Sbjct:     1 MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SV 58

Query:    54 PSTSAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNE 113
             PSTS  KSQL H  SRS  +  +                         WISWFCNLRGNE
Sbjct:    59 PSTSTAKSQL-H--SRSPDVESD--------TDSEGSDVSGSEGDDTSWISWFCNLRGNE 107

Query:   114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
             FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQ+E+VESAAEMLY
Sbjct:   108 FFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLY 167

Query:   174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
             GLIHVRYILT+KGMAAM+EKYKNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKC
Sbjct:   168 GLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKC 227

Query:   234 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 286
             EDIYYPRSKYQGNIDGAYFGTTFPHLFLM YG++KPQK  Q+YVP++FGFK+H
Sbjct:   228 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 280

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2152002 CKB1 "casein kinase II beta chain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 217/295 (73%), Positives = 236/295 (80%)

Query:     1 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
             MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A  
Sbjct:     1 MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANL 52

Query:    59 -GKSQ---LDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXX-XXWISWFCNLRGNE 113
              GK Q   ++HRDSRSASL KN                          WISWFCNLRGNE
Sbjct:    53 IGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNE 112

Query:   114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
             FFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFTEEQNEL+ESAAEMLY
Sbjct:   113 FFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLY 172

Query:   174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
             GLIH RYILTSKG+AAML+KYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKC
Sbjct:   173 GLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKC 232

Query:   234 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
             EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct:   233 EDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IGI;IDA

GO:0071900 "regulation of protein serine/threonine kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2129316 CKB2 "casein kinase II beta chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 208/293 (70%), Positives = 227/293 (77%)

Query:     1 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
             MYR+RG   SKSE+V    DRKRIN+    H  + S S S+ ++ K K    V STS   
Sbjct:     1 MYRERGMVGSKSEVV----DRKRINEI---HDNRPSHSMSQPVNGKGK----VTSTSVLM 49

Query:    59 GKSQL-DHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXX--XXWISWFCNLRGNEFF 115
             GK QL D   SRS S+ K                            WISWFCNLRGNEFF
Sbjct:    50 GKQQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFF 109

Query:   116 CEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 175
             CEVDD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+
Sbjct:   110 CEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGM 169

Query:   176 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCED 235
             IH R+ILTSKG+A+ML+KYKNYDFGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCPKCED
Sbjct:   170 IHARFILTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCED 229

Query:   236 IYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
             +YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA+QSY  RVFGFKLHKP
Sbjct:   230 VYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISS

TAIR|locus:2081937 CKB3 "casein kinase II beta chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 198/292 (67%), Positives = 230/292 (78%)

Query:     1 MYRDR----GGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPST 56
             MY++R    GGG+S+SEI+ G +DRKRINDAL+K LEK+S ST+ +     K++     T
Sbjct:     1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFT 60

Query:    57 SAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFC 116
             S  K+QL   +S + S                             WISWFCNLRGN+FFC
Sbjct:    61 ST-KTQLPDVESETDS---------------EGSDVSGSEGDDTSWISWFCNLRGNDFFC 104

Query:   117 EVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI 176
             EVD++YIQDDFNLCGLS QVPYYDYALDLILDV++S+ +MFT+EQ+E+VESAAEMLYGLI
Sbjct:   105 EVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLI 164

Query:   177 HVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDI 236
             HVRYILT+KGMAAM EKYKN DFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKCEDI
Sbjct:   165 HVRYILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDI 224

Query:   237 YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 288
              YPRSK+QGNIDGAYFGTTFPHLFLMTYG+LKPQK TQSYVP++FGFK+HKP
Sbjct:   225 SYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP 276

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008134 "transcription factor binding" evidence=IDA

UNIPROTKB|Q5SRQ6 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 112/210 (53%), Positives = 140/210 (66%)

Query:    77 KCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQV 136
             KC                       WISWFC LRGNEFFCEVD++YIQD FNL GL+ QV
Sbjct:     3 KCKGTSRMAGTTSADVKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQV 62

Query:   137 PYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKN 196
             P+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+ 
Sbjct:    63 PHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQ 122

Query:   197 YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTF 256
              DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT F
Sbjct:   123 GDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGF 182

Query:   257 PHLFLMTYGHLKPQKATQSYVPRVFGFKLH 286
             PH+  M +   +P++    +VPR++GFK+H
Sbjct:   183 PHMLFMVHPEYRPKRPANQFVPRLYGFKIH 212

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|P67869 CSNK2B "Casein kinase II subunit beta" [Gallus gallus (taxid:9031)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 281
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   282 GFKLH 286
             GFK+H
Sbjct:   189 GFKIH 193

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISS

UNIPROTKB|P67868 CSNK2B "Casein kinase II subunit beta" [Bos taurus (taxid:9913)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 281
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   282 GFKLH 286
             GFK+H
Sbjct:   189 GFKIH 193

GO:0031519 "PcG protein complex" evidence=ISS

GO:0061154 "endothelial tube morphogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|P67870 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 281
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   282 GFKLH 286
             GFK+H
Sbjct:   189 GFKIH 193

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0005956 "protein kinase CK2 complex" evidence=NAS

GO:0019887 "protein kinase regulator activity" evidence=NAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0031519 "PcG protein complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0004674 "protein serine/threonine kinase activity" evidence=TAS

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IMP

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IDA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043623 "cellular protein complex assembly" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0051101 "regulation of DNA binding" evidence=NAS

GO:0061154 "endothelial tube morphogenesis" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=NAS

UNIPROTKB|K7GQK6 CSNK2B "Casein kinase II subunit beta" [Sus scrofa (taxid:9823)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:    29 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 88

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    89 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 148

Query:   222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 281
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   149 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 208

Query:   282 GFKLH 286
             GFK+H
Sbjct:   209 GFKIH 213

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|P67872 CSNK2B "Casein kinase II subunit beta" [Sus scrofa (taxid:9823)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 281
               + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   282 GFKLH 286
             GFK+H
Sbjct:   189 GFKIH 193

GO:0031519 "PcG protein complex" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54PF1	CK2B_DICDI	No assigned EC number	0.5588	0.6944	0.7462	yes	no
P40228	CSK2B_ARATH	No assigned EC number	0.8033	0.9722	0.9756	yes	no
P40229	CSK2C_ARATH	No assigned EC number	0.7628	0.9687	0.9893	no	no
P67869	CSK2B_CHICK	No assigned EC number	0.5833	0.6666	0.8930	yes	no
P67868	CSK2B_BOVIN	No assigned EC number	0.5833	0.6666	0.8930	yes	no
P08182	CSK2B_DROME	No assigned EC number	0.5677	0.6666	0.8170	yes	no
P28548	CSK2B_CAEEL	No assigned EC number	0.5544	0.6597	0.8119	yes	no
Q91398	CSK2B_DANRE	No assigned EC number	0.5833	0.6666	0.8930	yes	no
O81275	CSK2D_ARATH	No assigned EC number	0.7661	0.8958	0.9347	no	no
P38930	CSK2C_YEAST	No assigned EC number	0.5026	0.6458	0.7209	yes	no
P40232	CSK2B_SCHPO	No assigned EC number	0.5837	0.6319	0.7878	yes	no
O80507	CSK2E_ARATH	No assigned EC number	0.7781	0.9479	0.9646	no	no
P67870	CSK2B_HUMAN	No assigned EC number	0.5833	0.6666	0.8930	yes	no
P67871	CSK2B_MOUSE	No assigned EC number	0.5833	0.6666	0.8930	yes	no
P67872	CSK2B_PIG	No assigned EC number	0.5833	0.6666	0.8930	yes	no
P67873	CSK2B_RABIT	No assigned EC number	0.5833	0.6666	0.8930	yes	no
P67874	CSK2B_RAT	No assigned EC number	0.5833	0.6666	0.8930	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019032001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (288 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
smart01085	184	smart01085, CK_II_beta, Casein kinase II regulator	1e-120
pfam01214	183	pfam01214, CK_II_beta, Casein kinase II regulatory	1e-116
PTZ00396	251	PTZ00396, PTZ00396, Casein kinase II subunit beta;	1e-104
COG5041	242	COG5041, SKB2, Casein kinase II, beta subunit [Sig	2e-88

>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit

 Score =  340 bits (874), Expect = e-120
 Identities = 116/184 (63%), Positives = 145/184 (78%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWI WFC+L+GNEFFCEVD+++I+DDFNL GL+S+VP Y  ALDLILD+E          
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDLDEDAS 60

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 220
           Q  L+ES+AE+LYGLIH RYILT +G+A MLEKYK  DFG CPRV+C GQP LPVG SD+
Sbjct: 61  QKSLIESSAELLYGLIHARYILTPRGLALMLEKYKRGDFGTCPRVFCNGQPLLPVGLSDV 120

Query: 221 PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRV 280
           P  STVK+YCP+C+D+Y P+S    NIDGA+FGT+FPHLFLMTY  L P+K  + Y+P++
Sbjct: 121 PGKSTVKLYCPRCQDVYTPKSSRHANIDGAFFGTSFPHLFLMTYPELIPKKPKEQYIPKI 180

Query: 281 FGFK 284
           +GFK
Sbjct: 181 YGFK 184

Length = 184

>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit

 Score =  331 bits (850), Expect = e-116
 Identities = 114/184 (61%), Positives = 140/184 (76%), Gaps = 1/184 (0%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWI WFC+L+GNEFFCEVD++YI+DDFNL GLS +VP Y  ALDLILD E    +   ++
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDYIEDDFNLYGLSEEVPNYKEALDLILDKEPES-ESLDDD 59

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 220
           + E +E  AE LYGLIH RYILT KG+A M EKYK  +FG CPRV C GQP LP+G SD+
Sbjct: 60  KKEEIEKEAEKLYGLIHARYILTPKGLAQMKEKYKEGEFGTCPRVLCNGQPLLPIGLSDV 119

Query: 221 PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRV 280
           P  STVK+YCP+C+D+Y P+S    NIDGAYFGT+FPH+FLMTY  L P+   + Y+PR+
Sbjct: 120 PGESTVKLYCPRCQDVYNPKSSRHSNIDGAYFGTSFPHMFLMTYPELVPKPPAKQYIPRI 179

Query: 281 FGFK 284
           FGFK
Sbjct: 180 FGFK 183

Length = 183

>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional

 Score =  304 bits (781), Expect = e-104
 Identities = 109/210 (51%), Positives = 144/210 (68%), Gaps = 6/210 (2%)

Query: 78  CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVP 137
            SDEES    E S+      +   WI WFC+L+G+EF CEVD+++I+D+FNL GL S+ P
Sbjct: 5   FSDEESSYSEEPSE------ESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFP 58

Query: 138 YYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNY 197
           +Y+ ALD+ILD E    +   +EQ   V   A  LYGLIH R+I T KG+A M EKY   
Sbjct: 59  FYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLIHARFITTPKGLALMREKYLQG 118

Query: 198 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFP 257
            FG CPRV C GQ  LP+G SD+ ++S VK+YCP+C+++Y+P+     +IDGA+FGT+FP
Sbjct: 119 KFGHCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYHPKKSSLLDIDGAFFGTSFP 178

Query: 258 HLFLMTYGHLKPQKATQSYVPRVFGFKLHK 287
           HLFLMTY  L P K  Q YVP++FGFK+HK
Sbjct: 179 HLFLMTYPELIPTKPPQYYVPKIFGFKVHK 208

Length = 251

>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

 Score =  263 bits (674), Expect = 2e-88
 Identities = 107/210 (50%), Positives = 146/210 (69%), Gaps = 3/210 (1%)

Query: 79  SDEESETDSEE-SDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVP 137
            +   E DS+  SD      +   WI WFC+ +GNE+FCEV +E+I+D FNL GLS +VP
Sbjct: 2   MENSLEDDSDNLSDDDSDSSEYDEWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVP 61

Query: 138 YYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNY 197
           +Y   LDLILD  +        ++ +++E +A  LYGLIH RYI+T  G+ AMLEKYK+ 
Sbjct: 62  HYSEVLDLILDKLAP--SNLENDEVDIIEESARQLYGLIHARYIITKSGLQAMLEKYKSR 119

Query: 198 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFP 257
           +FG CPRVYC GQ  LPVG SDIP  S+VK+YCP CED+Y P+S    +IDGA+FGT+FP
Sbjct: 120 EFGACPRVYCNGQQVLPVGLSDIPGKSSVKLYCPSCEDLYLPKSSRHQSIDGAFFGTSFP 179

Query: 258 HLFLMTYGHLKPQKATQSYVPRVFGFKLHK 287
           H+FL T+  L P+++ + Y+PR+FGF++H 
Sbjct: 180 HMFLQTFPELFPKRSCERYIPRIFGFRIHS 209

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG3092	216	consensus Casein kinase II, beta subunit [Signal t	100.0
PTZ00396	251	Casein kinase II subunit beta; Provisional	100.0
PF01214	184	CK_II_beta: Casein kinase II regulatory subunit; I	100.0
COG5041	242	SKB2 Casein kinase II, beta subunit [Signal transd	100.0

>KOG3092 consensus Casein kinase II, beta subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.6e-96  Score=651.72  Aligned_cols=192  Identities=70%  Similarity=1.289  Sum_probs=185.6

Q ss_pred             CCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 023046           96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  175 (288)
Q Consensus        96 ~~e~~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYGL  175 (288)
                      ++++.+||+|||+++|||||||||+|||+|+|||+||+.+||+|++||++|||+++.++.+..+++.++||++|++||||
T Consensus         3 ~see~sWI~wFc~~~GnEffceVdeeyIqD~FNltgL~~~Vp~y~~ald~ILD~~~~~~~e~~~~~~~~iE~aae~LYGL   82 (216)
T KOG3092|consen    3 SSEEVSWISWFCGLRGNEFFCEVDEEYIQDRFNLTGLSEQVPNYRQALDLILDLEPDDELEDNAEQSELIESAAEMLYGL   82 (216)
T ss_pred             cccccchHHHHhcCCCCeeeEecCHHHhhhhhccccccccCchHHHHHHHhhcCCCCcccccchhHHHHHHHHHHHHHHh
Confidence            34566799999999999999999999999999999999999999999999999998887777777789999999999999


Q ss_pred             cccccccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 023046          176 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT  255 (288)
Q Consensus       176 IHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGts  255 (288)
                      ||||||||.+||++|++||++++||+||||+|++|+|||+|+||+||+++||||||+|+|||.|+++++.+|||||||||
T Consensus        83 IHaRYIlT~~Gl~~M~eKy~~~dFG~CPRV~C~~q~~LPvGLsDipg~~~VklYCP~C~dvY~P~ssr~~~iDGa~fGts  162 (216)
T KOG3092|consen   83 IHARYILTNRGLAAMLEKYKNGDFGRCPRVYCCGQPVLPVGLSDIPGKSTVKLYCPSCEDVYIPKSSRHGNIDGAYFGTS  162 (216)
T ss_pred             hhheeeechHHHHHHHHHHhcCCCCcCCcccccCCccccccccCCCCcceEEEeCCCcccccccccccccccccchhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCcceeEeeeeecC
Q 023046          256 FPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK  287 (288)
Q Consensus       256 FpH~Fl~~yP~l~P~~~~~~YvPrIFGFKIh~  287 (288)
                      |||||||+||++.|+++.++|||||||||||+
T Consensus       163 FPhmff~~~p~l~P~r~~~~yvPriyGFkih~  194 (216)
T KOG3092|consen  163 FPHMFFMTHPELRPKRPTEQYVPRIYGFKIHK  194 (216)
T ss_pred             CchhHHHhccccCCCcchhhhcchheeeeeCc
Confidence            99999999999999999999999999999997

>PTZ00396 Casein kinase II subunit beta; Provisional

Probab=100.00  E-value=2.8e-90  Score=634.99  Aligned_cols=192  Identities=53%  Similarity=1.051  Sum_probs=182.8

Q ss_pred             CCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhccc
Q 023046           97 GDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI  176 (288)
Q Consensus        97 ~e~~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYGLI  176 (288)
                      .++.+||+|||+++||+|||+||+|||+|+||||||+.+||+|++||+||||.+.++++..+++..+.++++|++|||||
T Consensus        18 ~~~~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLI   97 (251)
T PTZ00396         18 EESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLI   97 (251)
T ss_pred             CCcCcHHHHHhCCCCCeeEEEeCHHHhcCcchhhCccccccCHHHHHHHHcCCCCCccccccchhHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999876655455667788999999999999


Q ss_pred             ccccccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCch
Q 023046          177 HVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTF  256 (288)
Q Consensus       177 HARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGtsF  256 (288)
                      |||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|++.++..||||||||||
T Consensus        98 HARyI~T~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSd~~g~~~VKlyCP~C~DvY~p~s~~~~~iDGA~FGtsF  177 (251)
T PTZ00396         98 HARFITTPKGLALMREKYLQGKFGHCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYHPKKSSLLDIDGAFFGTSF  177 (251)
T ss_pred             hHhHhcCHHHHHHHHHHhhCCCCCCCCCccCCCCcccccccCCCcCcCceeEeCCCchhhcCCCCccccccccceecCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999877799999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCcceeEeeeeecCC
Q 023046          257 PHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP  288 (288)
Q Consensus       257 pH~Fl~~yP~l~P~~~~~~YvPrIFGFKIh~~  288 (288)
                      ||||||+||++.|+++.++|+|||||||||++
T Consensus       178 ph~fl~~~p~l~p~~~~~~yvPrifGFki~~~  209 (251)
T PTZ00396        178 PHLFLMTYPELIPTKPPQYYVPKIFGFKVHKK  209 (251)
T ss_pred             HHHHHHhccccCCCCCCCccCCeeeeEEeccc
Confidence            99999999999999999999999999999964

>PF01214 CK_II_beta: Casein kinase II regulatory subunit; InterPro: IPR000704 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=5e-88  Score=595.90  Aligned_cols=184  Identities=64%  Similarity=1.221  Sum_probs=154.0

Q ss_pred             ChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhccccccc
Q 023046          101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY  180 (288)
Q Consensus       101 sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYGLIHARY  180 (288)
                      +||+|||+++||+||||||+|||+|+|||+||+++||+|++||++|||.+.++++..++++.+.++++|++|||||||||
T Consensus         1 sWI~~F~~~~~~~~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaRy   80 (184)
T PF01214_consen    1 SWIDWFCSLKGNEFFCEVDEDYIEDSFNLYGLSSQVPNYDEALDMILDKEPDEDEESDDESDDEIEKSAEMLYGLIHARY   80 (184)
T ss_dssp             -HHHHHHHSTTTTT-----HHHHHSGGGGTTGGGTSTTHHHHHHHHTT----TTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhCCCCCeEEEEeCHHHHhCcchhcChhhccccHHHHHHHHcCCCcccchhccchhHHHHHHHHHHHHhhhHHHH
Confidence            69999999999999999999999999999999999999999999999998776555666677899999999999999999


Q ss_pred             ccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchhHHH
Q 023046          181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF  260 (288)
Q Consensus       181 IlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGtsFpH~F  260 (288)
                      |+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|+++++.+||||||||||||||
T Consensus        81 I~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~lLPiGlsd~~g~~~vKlyCP~C~dvY~p~~~~~~~iDGA~FG~sFph~f  160 (184)
T PF01214_consen   81 ILTPRGLEQMKEKYEQGDFGRCPRVYCNGQPLLPIGLSDTPGESTVKLYCPRCKDVYHPPSSRHSNIDGAYFGPSFPHLF  160 (184)
T ss_dssp             TTSHHHHHHHHHHHHTTTT-B-SBGGGTT-B-EEEBS-SSTTS-BBEEEETTTTEEE--SSGGGTTSBGGGTTSSHHHHH
T ss_pred             hhcHHHHHHHHHhhcCCcCCcCCcccCCCCceeCccCCCCCCccceeEECCCCccccCCCCccccceeccccCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCcceeEeeee
Q 023046          261 LMTYGHLKPQKATQSYVPRVFGFK  284 (288)
Q Consensus       261 l~~yP~l~P~~~~~~YvPrIFGFK  284 (288)
                      +|+||++.|+.+.++|+|||||||
T Consensus       161 ~~~~p~~~~~~~~~~y~PrifGFk  184 (184)
T PF01214_consen  161 LMTYPELIPSPPPKPYVPRIFGFK  184 (184)
T ss_dssp             HHH-GGGS-SS-SS----ECTTCE
T ss_pred             HHHCccccCCCCCCccCCcccccC
Confidence            999999999999999999999998

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Casein kinase, a ubiquitous, well-conserved protein kinase involved in cell metabolism and differentiation, is characterised by its preference for Ser or Thr in acidic stretches of amino acids. The enzyme is a tetramer of 2 alpha- and 2 beta-subunits [, ]. However, some species (e.g., mammals) possess 2 related forms of the alpha-subunit (alpha and alpha'), while others (e.g., fungi) possess 2 related beta-subunits (beta and beta') []. The alpha-subunit is the catalytic unit and contains regions characteristic of serine/threonine protein kinases. The beta-subunit is believed to be regulatory, possessing an N-terminal auto-phosphorylation site, an internal acidic domain, and a potential metal-binding motif []. The beta subunit is a highly conserved protein of about 25kDa that contains, in its central section, a cysteine-rich motif, CX(n)C, that could be involved in binding a metal such as zinc []. The mammalian beta-subunit gene promoter shares common features with those of other mammalian protein kinases and is closely related to the promoter of the regulatory subunit of cAMP-dependent protein kinase [].; GO: 0019887 protein kinase regulator activity, 0005956 protein kinase CK2 complex; PDB: 2R6M_B 1RQF_K 1DS5_G 1QF8_B 3EED_A 4DGL_A 1JWH_D.

>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

Probab=100.00  E-value=8.8e-85  Score=583.44  Aligned_cols=185  Identities=55%  Similarity=1.144  Sum_probs=177.2

Q ss_pred             ChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhccccccc
Q 023046          101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY  180 (288)
Q Consensus       101 sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYGLIHARY  180 (288)
                      .||+|||+++||||||+||++||+|.|||+||+..||+|.+||++|||...+.  .+.+.+-+.||.+|+.|||||||||
T Consensus        25 ~Wi~~F~~rkg~eyfc~V~~efIeDrFNltgL~~~Vp~y~~~ldlILD~~~~~--~~e~~~~d~iE~sa~~LYgLIHaRy  102 (242)
T COG5041          25 EWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPS--NLENDEVDIIEESARQLYGLIHARY  102 (242)
T ss_pred             HHHHHHHcCCCCeeeeeCCHHHHHhhhhccchhhccchHHHHHHHHHhccCCc--chhhhhhHHHHHHHHHHHHHHHhhh
Confidence            79999999999999999999999999999999999999999999999987653  2333445789999999999999999


Q ss_pred             ccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchhHHH
Q 023046          181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLF  260 (288)
Q Consensus       181 IlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGtsFpH~F  260 (288)
                      |+|..||++|++||+.++||+||||+||+|+|||+||||+||+++||||||+|.|||.|+|+++..||||||||||||||
T Consensus       103 IiT~~GL~~m~eKy~~~efG~CPRv~Cn~~~vLPvGLsDi~g~~~vkLyCpsC~dlY~p~Ssr~~~iDGa~fGtSFPh~f  182 (242)
T COG5041         103 IITKSGLQAMLEKYKSREFGACPRVYCNGQQVLPVGLSDIPGKSSVKLYCPSCEDLYLPKSSRHQSIDGAFFGTSFPHMF  182 (242)
T ss_pred             eeeHHHHHHHHHHHhhcccCCCCcccccCcceeccccccCCCCceeEEecCchhhhcCcccccccccccchhccCCchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCcceeEeeeeecC
Q 023046          261 LMTYGHLKPQKATQSYVPRVFGFKLHK  287 (288)
Q Consensus       261 l~~yP~l~P~~~~~~YvPrIFGFKIh~  287 (288)
                      |++||++.|+++.+.|+|||||||||+
T Consensus       183 ~~~~pel~p~~~~e~YiprIfGfri~~  209 (242)
T COG5041         183 LQTFPELFPKRSCERYIPRIFGFRIHS  209 (242)
T ss_pred             HHhchhhcCCcchhhhcceeeeeEeeh
Confidence            999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
1jwh_C	215	Crystal Structure Of Human Protein Kinase Ck2 Holoe		2e-66
3eed_A	193	Crystal Structure Of Human Protein Kinase Ck2 Regul		5e-66
1rqf_A	184	Structure Of Ck2 Beta Subunit Crystallized In The P		3e-60
1qf8_A	182	Truncated Form Of Casein Kinase Ii Beta Subunit (2-		3e-57

>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 215

Iteration: 1
 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 110/185 (59%), Positives = 138/185 (74%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 281
             + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct: 129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188
Query: 282 GFKLH 286
           GFK+H
Sbjct: 189 GFKIH 193

>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory Subunit (Ck2beta; Mutant 1-193) Length = 193

Iteration: 1
 Score =  247 bits (631), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 110/185 (59%), Positives = 138/185 (74%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 281
             + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++
Sbjct: 129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188
Query: 282 GFKLH 286
           GFK+H
Sbjct: 189 GFKIH 193

>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence Of A P21waf1 Peptide Length = 184

Iteration: 1
 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 127/170 (74%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 15  WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 74
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 75  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 134
Query: 222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 271
             + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++
Sbjct: 135 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 184

>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182) From Homo Sapiens Length = 182

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 122/170 (71%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
           ++L+E AAE LYGLIH RYILT++G+A  LEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEXLYGLIHARYILTNRGIAQXLEKYQQGDFGYCPRVYCENQPXLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 271
             + VK+YCPKC D+Y P+S    + DGAYFGT FPH     +   +P++
Sbjct: 129 GEAXVKLYCPKCXDVYTPKSSRHHHTDGAYFGTGFPHXLFXVHPEYRPKR 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	1e-113
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	1e-103

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215

 Score =  324 bits (831), Expect = e-113
 Identities = 112/193 (58%), Positives = 142/193 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 274
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 275 SYVPRVFGFKLHK 287
            +VPR++GFK+H 
Sbjct: 182 QFVPRLYGFKIHP 194

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182

 Score =  296 bits (760), Expect = e-103
 Identities = 105/180 (58%), Positives = 131/180 (72%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQ 274
           +G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	100.0
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	100.0

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*

Probab=100.00  E-value=6.7e-95  Score=651.34  Aligned_cols=193  Identities=58%  Similarity=1.125  Sum_probs=175.3

Q ss_pred             CCCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhc
Q 023046           95 SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYG  174 (288)
Q Consensus        95 s~~e~~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYG  174 (288)
                      |++++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||+||||.+++++++.++++.+.|+++|++|||
T Consensus         2 s~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYG   81 (215)
T 4dgl_A            2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYG   81 (215)
T ss_dssp             ------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhh
Confidence            34457799999999999999999999999999999999999999999999999998765444445567889999999999


Q ss_pred             ccccccccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCC
Q 023046          175 LIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGT  254 (288)
Q Consensus       175 LIHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGt  254 (288)
                      |||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|+++++.+||||||||
T Consensus        82 LIHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGt  161 (215)
T 4dgl_A           82 LIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGT  161 (215)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTT
T ss_pred             hhhHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhCCCCCCCCCCCcceeEeeeeecC
Q 023046          255 TFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK  287 (288)
Q Consensus       255 sFpH~Fl~~yP~l~P~~~~~~YvPrIFGFKIh~  287 (288)
                      ||||||||+||++.|+++.++|+|||||||||+
T Consensus       162 sFph~f~~~~p~l~p~~~~~~yvPrifGFkih~  194 (215)
T 4dgl_A          162 GFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHP  194 (215)
T ss_dssp             THHHHHHHHCGGGCCCSCSCCCCCEETTEEECT
T ss_pred             cchHHHHHHcccccCCCCCCcccCeEeEEEecH
Confidence            999999999999999999999999999999996

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A

Probab=100.00  E-value=1.1e-87  Score=592.06  Aligned_cols=179  Identities=58%  Similarity=1.111  Sum_probs=162.6

Q ss_pred             CCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 023046           96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  175 (288)
Q Consensus        96 ~~e~~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYGL  175 (288)
                      ++++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||+||||.+..++++.++++.+.++++|++||||
T Consensus         3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL   82 (182)
T 1qf8_A            3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL   82 (182)
T ss_dssp             ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred             CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence            44577899999999999999999999999999999999999999999999999987655445555678999999999999


Q ss_pred             cccccccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 023046          176 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT  255 (288)
Q Consensus       176 IHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGts  255 (288)
                      ||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++.+|||||||||
T Consensus        83 IHaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGts  162 (182)
T 1qf8_A           83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTG  162 (182)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSS
T ss_pred             hhhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCC
Q 023046          256 FPHLFLMTYGHLKPQKATQ  274 (288)
Q Consensus       256 FpH~Fl~~yP~l~P~~~~~  274 (288)
                      |||||||+||++.|+++.+
T Consensus       163 Fph~f~~~~p~l~p~~~~~  181 (182)
T 1qf8_A          163 FPHMLFMVHPEYRPKRPAN  181 (182)
T ss_dssp             HHHHHHHHCGGGSCSCC--
T ss_pred             hHHHHHHHcccccCCCCCC
Confidence            9999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1qf8a_	173	g.41.4.1 (A:) Casein kinase II beta subunit {Human	1e-101

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  290 bits (745), Expect = e-101
 Identities = 104/171 (60%), Positives = 128/171 (74%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          
Sbjct: 2   SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN 61

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 220
           Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDI
Sbjct: 62  QSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDI 121

Query: 221 PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 271
           P  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++
Sbjct: 122 PGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1qf8a_	173	Casein kinase II beta subunit {Human (Homo sapiens	100.0

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-85  Score=570.30  Aligned_cols=173  Identities=60%  Similarity=1.134  Sum_probs=161.6

Q ss_pred             CChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcccccc
Q 023046          100 TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVR  179 (288)
Q Consensus       100 ~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYGLIHAR  179 (288)
                      .|||+|||+++||+||||||+|||+|+|||+||+++||+|++||++|||.+.+++...+..+.+.++++|+.||||||||
T Consensus         1 ~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaR   80 (173)
T d1qf8a_           1 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHAR   80 (173)
T ss_dssp             CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhCCCCCeEEEEeCHHHHcCcchhcCchhccccHHHHHHHHhccCCChhhhhhhhhhHHHHHHHHHHHHHhhhh
Confidence            48999999999999999999999999999999999999999999999999876654444556678999999999999999


Q ss_pred             cccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchhHH
Q 023046          180 YILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHL  259 (288)
Q Consensus       180 YIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGtsFpH~  259 (288)
                      ||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|+++++.+|||||||||||||
T Consensus        81 yI~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~~LPiGlSd~~g~~~vKlyCP~C~dvY~p~s~~~~~iDGA~FG~sFph~  160 (173)
T d1qf8a_          81 YILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHM  160 (173)
T ss_dssp             HTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSSHHHH
T ss_pred             eeecHhHHHHHHHHHhCCCCCCCCCcccCCCcccccccCCCCCcCcceEECCChhhccCCCCcccCcccchhccCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCC
Q 023046          260 FLMTYGHLKPQKA  272 (288)
Q Consensus       260 Fl~~yP~l~P~~~  272 (288)
                      |||+||+++|++|
T Consensus       161 fl~~yp~l~P~~P  173 (173)
T d1qf8a_         161 LFMVHPEYRPKRP  173 (173)
T ss_dssp             HHHHCGGGSCSCC
T ss_pred             HHHHCcccCCCCC
Confidence            9999999999875