Citrus Sinensis ID: 023065

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKHF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHccHHHHHcccccccccccccccHHHHHHHHHccccccccHHHHHHHHHcccccccccEEEEEEcccccEEEEEEccccEEEccccccccEEcccccccccccEEEEEEEEEEEEEEEEccccccEEEEEEEEEEccccccccccccEEEEEEEccccEEEEEEEcccccccEEEEEccccccEEEEEEEEEEEccccccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHccccccccccHHHHHHHHccccEcccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEEccccccEEEEEEEEEEccccccccccccEEEEEEcccccEEEEEEEccccccccEEccccccccEEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEEccHHHHHHccc
Coil and Loop (DISEMBL)
mganfsalfrdpngatpgfaaakpglgdlpeSCVALIIGSLDPTEICKLARLNRAFRGASLADfvwesklppnyRTLIEEVFGDLKKDLGKREIYARLCRmnsfdggtkkvwldkstggvclsisakglaitgiddrrywnhipteesrfTSVAYLQQIWWFEvdgevefpfpagtySIFIRLQLGRASKrfgrricstehvhgwdrkpvqfqlwtsdgqhassqcilnepgkwvqYHIGDFIVENGNLLTKIKFSMMQIdcthtkgglcldsvlicpskcterlkhf
Flexible Loop (DISEMBL)
MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLcrmnsfdggtkkVWLDKSTGGVCLSISAKglaitgiddrrYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICStehvhgwdrkpVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTkgglcldsvliCPSKCTERLKHF
Low Complexity Region (SEG)
MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKHF
Disordered region (IsUnstruct)
************************GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKC*******
Disordered Region (DISOPRED)
***************************DLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTL*****************YARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQF***************LNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKC*******
Disordered Region (DISEMBL)
MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKHF
Disordered Region (DISPRO)
*************************LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLK*F
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKHF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q9LN77	291	F-box protein PP2-A12 OS=	yes	no	0.923	0.914	0.704	1e-113
Q9CAN4	289	F-box protein PP2-A11 OS=	no	no	0.989	0.986	0.618	1e-102
Q9LEX0	290	F-box protein PP2-A13 OS=	no	no	0.965	0.958	0.610	1e-100
Q9FJ80	291	F-box protein PP2-A14 OS=	no	no	0.979	0.969	0.520	1e-83
Q9LF92	300	F-box protein PP2-A15 OS=	no	no	0.947	0.91	0.539	1e-83
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.843	0.893	0.300	2e-23
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.534	0.504	0.358	3e-21
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.798	0.718	0.277	5e-20
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.666	0.571	0.292	1e-18
Q9FV02	294	F-box protein SKIP3 OS=Ar	no	no	0.868	0.850	0.278	3e-17

>sp|Q9LN77|P2A12_ARATH F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/267 (70%), Positives = 223/267 (83%), Gaps = 1/267 (0%)

Query: 23  KPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVF 82
           KPGLGDLPE+CVA+I+ +LDP EIC+ ++LNRAFRGAS AD VWESKLP NYR ++E++ 
Sbjct: 25  KPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKIL 84

Query: 83  GDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNH 142
           G   ++L KR +YA L R+NSFD  TKKVW+DK T GVCLSISAKGL+ITGIDDRRYW+H
Sbjct: 85  GGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSH 144

Query: 143 IPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHV 202
           IPT+ESRF+SVAYLQQIWWFEVDGE++FPFP GTYSIF RLQLGR+ K FGRR+C+TE V
Sbjct: 145 IPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQV 204

Query: 203 HGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNL-LTKIKFSMMQID 261
           HGWD KPV+FQLWT DGQ++SSQC+L E G W+ YH GD +V   N   TKIKFSM QID
Sbjct: 205 HGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKFSMTQID 264

Query: 262 CTHTKGGLCLDSVLICPSKCTERLKHF 288
           CTHTKGGL LDSV++ PS C ++LK F
Sbjct: 265 CTHTKGGLSLDSVVVYPSSCKDQLKRF 291

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN4|P2A11_ARATH F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/286 (61%), Positives = 225/286 (78%), Gaps = 1/286 (0%)

Query: 1   MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
           MG+ FS   ++ +         +PGLGDLPESCVALI+ +LDP EIC+ ++LN AF GAS
Sbjct: 1   MGSGFSLFQKNLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGAS 60

Query: 61  LADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGV 120
            ADFVWESKLPP+Y+ ++E++ G    +L KR+I+  L R+NSFD G KK W+DK TGG+
Sbjct: 61  WADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGL 120

Query: 121 CLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIF 180
           CL  SAKGL+ITGIDDRRYW+HIP+++SRF SVAY+QQIWWF+VDGE++FPFPAGTYS++
Sbjct: 121 CLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVY 180

Query: 181 IRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIG 240
            RLQLG+  KRFG ++  TE VHGW+ KPV+FQL T DGQH+SSQC+L E G W  YH G
Sbjct: 181 FRLQLGKPGKRFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTEAGNWSHYHAG 240

Query: 241 DFIV-ENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERL 285
           DF+V ++ +  TKIKFSM QIDCTHTKGGLC+DSV++ PS C +RL
Sbjct: 241 DFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDRL 286

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEX0|P2A13_ARATH F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1

 Score =  366 bits (939), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/293 (61%), Positives = 218/293 (74%), Gaps = 15/293 (5%)

Query: 1   MGANFSALFRDPNGATPGF------AAAKPGLGDLPESCVALIIGSLDPTEICKLARLNR 54
           MGAN S       G +P F       + K  L DLPE+CVALI+  LDP EIC+LARLNR
Sbjct: 1   MGANIS-------GGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNR 53

Query: 55  AFRGASLADFVWESKLPPNYRTLIEEVFGDLK-KDLGKREIYARLCRMNSFDGGTKKVWL 113
            FR AS ADF+WESKLP NYR +  +VF ++    L K+++YA+L + N FD GTK++W+
Sbjct: 54  MFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWI 113

Query: 114 DKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFP 173
           DK+TG +CLSIS+K L ITGIDDRRYW+HIPT+ESRF S AY+QQIWWFEV GE E  FP
Sbjct: 114 DKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFP 173

Query: 174 AGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCIL-NEPG 232
           +GTYS+F R+QLG+ SKR GRRIC++EH+HGWD KPV+FQL TSD Q A S C L N PG
Sbjct: 174 SGTYSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNPG 233

Query: 233 KWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERL 285
            W  YH+GDF V N ++ T IKFSM QIDCTHTKGGLC+DSVLI P +C + +
Sbjct: 234 SWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKECAKEV 286

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ80|P2A14_ARATH F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/294 (52%), Positives = 201/294 (68%), Gaps = 12/294 (4%)

Query: 1   MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
           MGA  S++ R     +  FA    GL D+PE+C+  +   ++P EIC LAR+N++F  AS
Sbjct: 1   MGAASSSIVR-----SEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRAS 55

Query: 61  LADFVWESKLPPNYRTLIEEVFGDLK----KD---LGKREIYARLCRMNSFDGGTKKVWL 113
            +D VWE KLP NY+ L+  +  D +    KD     K+EIYARLCR N FD GTK+ WL
Sbjct: 56  RSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWL 115

Query: 114 DKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFP 173
           DK +G V L+IS K + ITGIDDRRYW HI ++ESRF S+ YL+QIWW E  G++ F F 
Sbjct: 116 DKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFA 175

Query: 174 AGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGK 233
            G YS+  ++QLG+  ++ GR+ CS + VHGWD KPV+FQL TSDGQ A S+  L+E G+
Sbjct: 176 PGKYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDESGR 235

Query: 234 WVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKH 287
           WV +H GDF+VEN N    +KFSM+QIDCTHTKGGLCLD V+ICP +   + K+
Sbjct: 236 WVYHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEYRGKYKY 289

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF92|P2A15_ARATH F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1

 Score =  309 bits (792), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 156/289 (53%), Positives = 197/289 (68%), Gaps = 16/289 (5%)

Query: 1   MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
           MG++ S L    N  T G A   PGLGD+PESCVA +   L P EIC LA LNR+FRGA+
Sbjct: 1   MGSSLSNL----NDGTNGLAMG-PGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAA 55

Query: 61  LADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGV 120
            +D VWE KLP NY+ L++ +  +    L K++I+A L R   FD   K+VW+D+ TG V
Sbjct: 56  SSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRV 115

Query: 121 CLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIF 180
           C++ISA+G++ITGI+DRRYWN IPTEESRF  VAYLQQIWWFEVDG V F  P G YS+ 
Sbjct: 116 CMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLS 175

Query: 181 IRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEP--------- 231
            R+ LGR +KR GRR+C  E  HGWD KPV+F L TSDGQ AS +  L++          
Sbjct: 176 FRIHLGRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKH 235

Query: 232 --GKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICP 278
             G W++Y +G+FIV      T+I++SM QIDCTH+KGGLC+DSV I P
Sbjct: 236 KRGYWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINP 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 20/263 (7%)

Query: 29  LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLI--EEVFGDLK 86
            PE C++ II   +P + C  A +++ F     +D +WE  LP +Y +LI    VF    
Sbjct: 17  FPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFS--- 73

Query: 87  KDLGKREIYARLCRMNS-FDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPT 145
               K+E+Y  LC     FD   K VWL+K++G  CL +SA  L+I   D+ +YW  IP 
Sbjct: 74  ---SKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPI 130

Query: 146 EESRFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFIRLQLGRASKRFGRRICSTEHVH 203
            ESRF  VA L+ + WFE+ G        P   YS +I  +     K +G +  + E   
Sbjct: 131 PESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFK--GVDKCYGFQNVAIEAAV 188

Query: 204 GW-----DRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLT-KIKFSM 257
           G       R+ + F      G+    +    E G W++  +G+F  + G +   +I+ S 
Sbjct: 189 GVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDG-WMEIELGEFFNDGGIMDNDEIEMSA 247

Query: 258 MQIDCTHTKGGLCLDSVLICPSK 280
           ++    + K GL +  + I P+K
Sbjct: 248 LETKQLNRKCGLIIQGIEIRPAK 270

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 5/159 (3%)

Query: 26  LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDL 85
           L DLPE CV++I+    P + C LA +++ F  A  +D VWE  +PP Y +LI +     
Sbjct: 36  LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQ--SRA 93

Query: 86  KKDLGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIP 144
            K L K+E+Y  LC  +   D G K +W++K+    C+ ISA  LAI   +  + W  IP
Sbjct: 94  FKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIP 153

Query: 145 TEESRFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFI 181
             ++RF +VA L ++  FE+ G +      P   YS +I
Sbjct: 154 DPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYI 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 47/277 (16%)

Query: 29  LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEE--VFGDLK 86
           LPE C++ II    P + C  A +++ F  A  +D VW+  LPP Y +L+    VF    
Sbjct: 64  LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFA--- 120

Query: 87  KDLGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPT 145
               K+E+Y  LC      + G K  WL+K++G  C+ +S+K L IT      YW  I  
Sbjct: 121 ---SKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISI 177

Query: 146 EESRFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFIRLQLGRASKRFGRRICSTEHVH 203
            ESRF  +A L  + WFE+ G+       P   YS +I  +             + +   
Sbjct: 178 PESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFK-------------TKDRCP 224

Query: 204 GWDRKPVQFQLWTSDGQHASSQCI----------------LNEPGK----WVQYHIGDFI 243
           G    PV+  L    GQ +S + I                + +P +    W++  +G+F 
Sbjct: 225 GLGHLPVEVGLGLV-GQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFF 283

Query: 244 VENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSK 280
             N     +I+FS+++I     K GL +  +   P+K
Sbjct: 284 --NEERCDEIEFSVIEIKSPSWKSGLIIQGIEFRPTK 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 29  LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKD 88
           LPE C++ +I    P + C +A ++++ + A+ +D VWE  LP  Y +L+ +        
Sbjct: 35  LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQS----ANH 90

Query: 89  LGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEE 147
           L K+EI+  L   +   + G K  W++K++G  C  +SA  L I   D   YW  I   E
Sbjct: 91  LSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPE 150

Query: 148 SRFTSVAYLQQIWWFEVDGEVEF-PFPAGT-YSIFIRLQLGRASKRFGRRICSTEHVHGW 205
           S+F  VA L+ + WFEV G++       GT YS+++  +     + +G  +   E   G+
Sbjct: 151 SKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANG-RSYGFDLVPVEAGVGF 209

Query: 206 -----DRKPVQFQLWTSDGQHASSQ 225
                 +K V F+   +D + A+S 
Sbjct: 210 VGKVATKKSVYFESGNADSRSATSH 234

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FV02|SKIP3_ARATH F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 132/276 (47%), Gaps = 26/276 (9%)

Query: 26  LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLI--EEVFG 83
           L  LPE C++ II    P + C  A +++ F  A  +D VWE  LP +Y +LI    VF 
Sbjct: 24  LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSRVFS 83

Query: 84  DLKKDLGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDD---RRY 139
                  K+E+Y  LC      + G   +WL+K++G  C+ +SA  + ++ + D   R  
Sbjct: 84  ------SKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFL 137

Query: 140 WNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPA--GTYSIFIRLQLGRASKRFGRRIC 197
           W  IP  ESRF +VA L++ + FE +  +     +    YS++I  +  +A    G +  
Sbjct: 138 W--IPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFK--KADNWCGFKGV 193

Query: 198 STEHVHGW--DRKPVQFQLWTSDGQ-HASSQCILNEP----GKWVQYHIGDFIVENGNLL 250
           S E V G   +     F  + + G+  A  + ++ +P      W++  IG+F  E G + 
Sbjct: 194 SIEAVVGIVGEESFRSFICFDTHGKGQARKRKVVAKPELREDGWMETEIGEFYNEGGLMS 253

Query: 251 T-KIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERL 285
           + +++ S ++      K GL +  + I P+K  E  
Sbjct: 254 SDEVEISTVEGKYAQQKRGLVILGIEIRPAKILEEF 289

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
224074873	298	f-box family protein [Populus trichocarp	1.0	0.966	0.741	1e-124
224053967	299	f-box family protein [Populus trichocarp	1.0	0.963	0.729	1e-123
225426781	283	PREDICTED: F-box protein PP2-A12 [Vitis	0.982	1.0	0.725	1e-120
255537291	301	ATPP2-A13, putative [Ricinus communis] g	1.0	0.956	0.707	1e-118
297742595	309	unnamed protein product [Vitis vinifera]	0.968	0.902	0.721	1e-118
356565295	286	PREDICTED: F-box protein PP2-A12-like [G	0.885	0.891	0.756	1e-116
356514064	287	PREDICTED: F-box protein PP2-A12-like [G	0.885	0.888	0.752	1e-116
225453740	289	PREDICTED: F-box protein PP2-A13 [Vitis	0.958	0.955	0.685	1e-113
388505830	286	unknown [Medicago truncatula]	0.885	0.891	0.727	1e-112
297849658	291	phloem protein 2-A12 [Arabidopsis lyrata	1.0	0.989	0.663	1e-112

>gi|224074873|ref|XP_002304470.1| f-box family protein [Populus trichocarpa] gi|222841902|gb|EEE79449.1| f-box family protein [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/298 (74%), Positives = 238/298 (79%), Gaps = 10/298 (3%)

Query: 1   MGANFSALFRDPNGAT---------PGFAAAKPGLGDLPESCVALIIGSLDPTEICKLAR 51
           MGAN S  F DPN  +             A KP LGDLPE CVALI+  L+P EICKLAR
Sbjct: 1   MGANLSLTFTDPNACSLVGSLCLQISSPPATKPSLGDLPEGCVALILEYLNPQEICKLAR 60

Query: 52  LNRAFRGASLADFVWESKLPPNYRTLIEEVFGD-LKKDLGKREIYARLCRMNSFDGGTKK 110
           LNRAFRGAS ADFVWESKLP NY  LI  V GD LK  L KREIY RLCR N+FD GTKK
Sbjct: 61  LNRAFRGASWADFVWESKLPVNYEDLIGRVLGDDLKDKLCKREIYTRLCRANAFDDGTKK 120

Query: 111 VWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEF 170
            WLDK T GVCLSI++KGLAITGIDDRRYWNHIPTEESRF SVAYLQQIWWFEVDG+ EF
Sbjct: 121 AWLDKRTRGVCLSIASKGLAITGIDDRRYWNHIPTEESRFNSVAYLQQIWWFEVDGQFEF 180

Query: 171 PFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNE 230
           PFPAGTYS+F RLQLGRA+KRFGRRIC+TEHVHGW+ KPVQFQ+WTSDGQHASSQC LN+
Sbjct: 181 PFPAGTYSLFFRLQLGRAAKRFGRRICNTEHVHGWEIKPVQFQIWTSDGQHASSQCFLND 240

Query: 231 PGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKHF 288
           PGKW  YH GDF+V+  N  TK+KFSM QIDCTHTKGGLCLDSVL+ P K  E LKHF
Sbjct: 241 PGKWNLYHAGDFVVDGSNASTKLKFSMTQIDCTHTKGGLCLDSVLVYPCKLREGLKHF 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053967|ref|XP_002298062.1| f-box family protein [Populus trichocarpa] gi|222845320|gb|EEE82867.1| f-box family protein [Populus trichocarpa]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/299 (72%), Positives = 242/299 (80%), Gaps = 11/299 (3%)

Query: 1   MGANFSALFRDPN----------GATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLA 50
           MGAN S+ F DPN            +P     KPGLGDLPESCVAL++  L+P+EIC+LA
Sbjct: 1   MGANLSSSFADPNVYSLVGSLCLQPSPPPPRIKPGLGDLPESCVALVLEYLNPSEICRLA 60

Query: 51  RLNRAFRGASLADFVWESKLPPNYRTLIEEVFGD-LKKDLGKREIYARLCRMNSFDGGTK 109
           +LNRAFRGAS ADFVWESKLP NY  LIE VFGD L+  L KRE+Y RLCR N+FD GTK
Sbjct: 61  KLNRAFRGASWADFVWESKLPVNYEDLIERVFGDGLEDKLCKREVYTRLCRANTFDDGTK 120

Query: 110 KVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVE 169
           K WLDK TGGVCLSI++KGLAITGIDDRRYWNHIPTEES F SVAYLQQIWWFEVDG+ E
Sbjct: 121 KAWLDKRTGGVCLSIASKGLAITGIDDRRYWNHIPTEESSFNSVAYLQQIWWFEVDGQFE 180

Query: 170 FPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILN 229
           FPFPAGTYS+F RLQLGRA+KRFGRRIC+TEHVHGWD KPVQFQLWTSDGQ+ASSQC L 
Sbjct: 181 FPFPAGTYSLFFRLQLGRAAKRFGRRICNTEHVHGWDIKPVQFQLWTSDGQYASSQCFLE 240

Query: 230 EPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKHF 288
           +PGKW  YH GDF+V+  N  TK+KFSM QIDCTHTKGGLCLDS+L+ P K  E L HF
Sbjct: 241 DPGKWNLYHAGDFVVDGTNASTKLKFSMTQIDCTHTKGGLCLDSILVYPCKLKEGLGHF 299

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426781|ref|XP_002282844.1| PREDICTED: F-box protein PP2-A12 [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/288 (72%), Positives = 236/288 (81%), Gaps = 5/288 (1%)

Query: 1   MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
           MG   S L  +  G       ++P LGDLPE CVAL++  LDP EICKLA+LNRAFRGAS
Sbjct: 1   MGTGVSLLACENEGC-----PSRPRLGDLPEDCVALVLSYLDPPEICKLAKLNRAFRGAS 55

Query: 61  LADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGV 120
            AD VWE KLP NY  +IE+VF D  ++L K+EIYARLC+ N FDGGTKK WLDK TGGV
Sbjct: 56  RADLVWEPKLPSNYCLVIEKVFKDFPENLCKKEIYARLCQPNPFDGGTKKAWLDKRTGGV 115

Query: 121 CLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIF 180
           CLSIS+KGLAITGIDDRRYW +IPTEESRF +VAY+QQIWW EVDGEV+FPFPAGTYSIF
Sbjct: 116 CLSISSKGLAITGIDDRRYWTYIPTEESRFNTVAYVQQIWWLEVDGEVDFPFPAGTYSIF 175

Query: 181 IRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIG 240
            RLQLGRASKR GRRIC+ EHVHGWD KPV+FQLWTSDGQHA+SQC L+EPG+W+QYH  
Sbjct: 176 FRLQLGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHATSQCFLDEPGRWIQYHAA 235

Query: 241 DFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKHF 288
           DF+V+N N  TKIKFSM QIDCTHTKGGLC+DSVLI P +  ERLKHF
Sbjct: 236 DFVVDNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYPREFRERLKHF 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537291|ref|XP_002509712.1| ATPP2-A13, putative [Ricinus communis] gi|223549611|gb|EEF51099.1| ATPP2-A13, putative [Ricinus communis]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/301 (70%), Positives = 239/301 (79%), Gaps = 13/301 (4%)

Query: 1   MGANFSALFRDPN------GATPG-FAAAKPG---LGDLPESCVALIIGSLDPTEICKLA 50
           MGAN S++F DPN      G  P  F ++ P    LGDLPESCVALI+  LDP EI K A
Sbjct: 1   MGANLSSIFMDPNSLSLYCGPLPSSFQSSNPSHPCLGDLPESCVALILEYLDPQEIFKFA 60

Query: 51  RLNRAFRGASLADFVWESKLPPNYRTLIEEVFG---DLKKDLGKREIYARLCRMNSFDGG 107
           RLNRAFRGAS ADFVWESKLP NY +L+E VFG   D  + L KREIY  LCR N+FDGG
Sbjct: 61  RLNRAFRGASWADFVWESKLPSNYVSLLERVFGGDDDFPRKLNKREIYTILCRANTFDGG 120

Query: 108 TKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGE 167
           TKKVWLDK TGGVCLSI +KGL+ITGIDDRRYWNHIPTEESRF SVAYLQQIWW EVDG+
Sbjct: 121 TKKVWLDKITGGVCLSICSKGLSITGIDDRRYWNHIPTEESRFQSVAYLQQIWWLEVDGQ 180

Query: 168 VEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCI 227
            EFPF AGTYS+F RLQLGRA+K+FGRR+C+TEHVHGWD KPV+FQLWTSDGQ+ASSQ  
Sbjct: 181 FEFPFLAGTYSLFFRLQLGRAAKKFGRRVCNTEHVHGWDIKPVRFQLWTSDGQYASSQRF 240

Query: 228 LNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKH 287
           LN+ G W  YH GDF+V++ N    +KFSM QIDCTHTKGGLCLDSV++ P K  ERLKH
Sbjct: 241 LNDTGNWNLYHAGDFVVDSSNSSMNLKFSMTQIDCTHTKGGLCLDSVVVYPCKFKERLKH 300

Query: 288 F 288
           F
Sbjct: 301 F 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742595|emb|CBI34744.3| unnamed protein product [Vitis vinifera]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/284 (72%), Positives = 232/284 (81%), Gaps = 5/284 (1%)

Query: 1   MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
           MG   S L  +  G       ++P LGDLPE CVAL++  LDP EICKLA+LNRAFRGAS
Sbjct: 1   MGTGVSLLACENEGC-----PSRPRLGDLPEDCVALVLSYLDPPEICKLAKLNRAFRGAS 55

Query: 61  LADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGV 120
            AD VWE KLP NY  +IE+VF D  ++L K+EIYARLC+ N FDGGTKK WLDK TGGV
Sbjct: 56  RADLVWEPKLPSNYCLVIEKVFKDFPENLCKKEIYARLCQPNPFDGGTKKAWLDKRTGGV 115

Query: 121 CLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIF 180
           CLSIS+KGLAITGIDDRRYW +IPTEESRF +VAY+QQIWW EVDGEV+FPFPAGTYSIF
Sbjct: 116 CLSISSKGLAITGIDDRRYWTYIPTEESRFNTVAYVQQIWWLEVDGEVDFPFPAGTYSIF 175

Query: 181 IRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIG 240
            RLQLGRASKR GRRIC+ EHVHGWD KPV+FQLWTSDGQHA+SQC L+EPG+W+QYH  
Sbjct: 176 FRLQLGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHATSQCFLDEPGRWIQYHAA 235

Query: 241 DFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTER 284
           DF+V+N N  TKIKFSM QIDCTHTKGGLC+DSVLI P +  ER
Sbjct: 236 DFVVDNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYPREFRER 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565295|ref|XP_003550877.1| PREDICTED: F-box protein PP2-A12-like [Glycine max]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/255 (75%), Positives = 219/255 (85%)

Query: 26  LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDL 85
           LG+LPESCVA I+  +DP +ICKLA LNRAFRGAS ADFVWESKLPPNY  L+  +F D 
Sbjct: 21  LGELPESCVAQIMTYMDPPQICKLATLNRAFRGASSADFVWESKLPPNYDVLLRRIFADF 80

Query: 86  KKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPT 145
              LGKR IYARLCR+NS D GTKKVWLD+  G +CL +SAKGL+ITGIDDRR WNHIPT
Sbjct: 81  PSHLGKRGIYARLCRLNSLDDGTKKVWLDRGMGKLCLCVSAKGLSITGIDDRRNWNHIPT 140

Query: 146 EESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGW 205
           +ESRF+SVAYLQQIWWFEVDGEVEFPFPAG YS+F R+ LGRA KRFGRR+C+TEHVHGW
Sbjct: 141 DESRFSSVAYLQQIWWFEVDGEVEFPFPAGKYSVFFRIHLGRAGKRFGRRVCNTEHVHGW 200

Query: 206 DRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHT 265
           D+KPV+FQLWTSDGQ+ +SQC LN PGKW+ YH GDF+VE+GN  TK+KFSM QIDCTHT
Sbjct: 201 DKKPVRFQLWTSDGQYVASQCFLNGPGKWIYYHAGDFVVEDGNASTKVKFSMTQIDCTHT 260

Query: 266 KGGLCLDSVLICPSK 280
           KGGLCLDSVLI PS+
Sbjct: 261 KGGLCLDSVLIYPSE 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514064|ref|XP_003525727.1| PREDICTED: F-box protein PP2-A12-like [Glycine max]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/255 (75%), Positives = 220/255 (86%)

Query: 26  LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDL 85
           LG+LPESCVA I+  +DP +ICKLA LNRAFRGAS ADFVWESKLPPNY  L+  +F D 
Sbjct: 22  LGELPESCVAQIMTYMDPPQICKLATLNRAFRGASSADFVWESKLPPNYDILLRRIFADF 81

Query: 86  KKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPT 145
              LGKR IYARLCR+NS D GTKKVWLD+  G +CL +SAKGL+ITGIDDRRYWNHIPT
Sbjct: 82  PSHLGKRGIYARLCRLNSLDDGTKKVWLDRGMGKLCLCVSAKGLSITGIDDRRYWNHIPT 141

Query: 146 EESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVHGW 205
           +ESRF+SVAYLQQIWWF+VDGEVEFPFPAG YS+F R+ LGRA KRFGRR+C+TEHVHGW
Sbjct: 142 DESRFSSVAYLQQIWWFQVDGEVEFPFPAGKYSVFFRIHLGRAGKRFGRRVCNTEHVHGW 201

Query: 206 DRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHT 265
           D+KPV+FQLWTSDGQ+ +SQC LN PGKW+ YH GDF+VE+GN  TK+KFSM QIDCTHT
Sbjct: 202 DKKPVRFQLWTSDGQYVASQCFLNGPGKWIFYHAGDFVVEDGNASTKVKFSMTQIDCTHT 261

Query: 266 KGGLCLDSVLICPSK 280
           KGGLCLDSVL+ PS+
Sbjct: 262 KGGLCLDSVLVYPSE 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453740|ref|XP_002269833.1| PREDICTED: F-box protein PP2-A13 [Vitis vinifera] gi|296089069|emb|CBI38772.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/280 (68%), Positives = 227/280 (81%), Gaps = 4/280 (1%)

Query: 1   MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
           MGAN S +  D +G       ++P LGD+PESC+AL++ +LDP EICKLARLNRAFRGAS
Sbjct: 1   MGANISGIDADTDGDNN--PPSRPKLGDIPESCLALVLMNLDPPEICKLARLNRAFRGAS 58

Query: 61  LADFVWESKLPPNYRTLIEE--VFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTG 118
            ADF+WE+KLPPNYR+LI+E  +F +   +L K+ IYARLCR N FDGGTK+VWLDK TG
Sbjct: 59  AADFIWEAKLPPNYRSLIQELKIFDEFSMNLRKKGIYARLCRPNPFDGGTKEVWLDKRTG 118

Query: 119 GVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYS 178
           GVC SIS+K L ITGIDDRRYWNHIPTEESRF +VAYLQQ WWFEVDGE EF FP GTYS
Sbjct: 119 GVCFSISSKALTITGIDDRRYWNHIPTEESRFQTVAYLQQTWWFEVDGEFEFRFPPGTYS 178

Query: 179 IFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYH 238
           +F RL LGRASKR GRR+C+ EH+HGWD KPV+FQL TS+GQHA S+C L  PG W+ +H
Sbjct: 179 LFFRLHLGRASKRLGRRVCNPEHIHGWDIKPVKFQLTTSEGQHAVSKCYLENPGNWIHHH 238

Query: 239 IGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICP 278
           +GDF+VE G+   K+KFS  QIDCTHTKGG+C+DSVLICP
Sbjct: 239 VGDFVVEQGDTAMKVKFSATQIDCTHTKGGVCVDSVLICP 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505830|gb|AFK40981.1| unknown [Medicago truncatula]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/257 (72%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 26  LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVF--G 83
           LG+LPESC+A+I+  +DP +ICKLA LNRAF G SLADFVWESKLP NY  +I+++F   
Sbjct: 19  LGELPESCIAVIMEYMDPPQICKLASLNRAFHGTSLADFVWESKLPSNYHVIIQKIFDGS 78

Query: 84  DLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHI 143
                LGKR IY+RLC +N+FD GTKKVWLD+S G VCLS+SAKGL+ITGIDDRRYWNH+
Sbjct: 79  SFPSHLGKRGIYSRLCSLNTFDEGTKKVWLDRSMGKVCLSVSAKGLSITGIDDRRYWNHV 138

Query: 144 PTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHVH 203
           PTEESRF+SVAYLQQIWWFEVDGEVEFPFPAGTYS+F R+ LG+ SKRFGRR+C+TEHVH
Sbjct: 139 PTEESRFSSVAYLQQIWWFEVDGEVEFPFPAGTYSLFFRIHLGKPSKRFGRRVCNTEHVH 198

Query: 204 GWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCT 263
           GWD KPV+FQLWTSD Q+ SSQC L  PGKW  YH GDF+VE+ N+ TK+KFSM QIDCT
Sbjct: 199 GWDVKPVRFQLWTSDDQYDSSQCFLKGPGKWRYYHAGDFVVEDSNVSTKVKFSMTQIDCT 258

Query: 264 HTKGGLCLDSVLICPSK 280
           HTKGGLCLDSV + PS+
Sbjct: 259 HTKGGLCLDSVFVYPSE 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849658|ref|XP_002892710.1| phloem protein 2-A12 [Arabidopsis lyrata subsp. lyrata] gi|297338552|gb|EFH68969.1| phloem protein 2-A12 [Arabidopsis lyrata subsp. lyrata]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/291 (66%), Positives = 233/291 (80%), Gaps = 3/291 (1%)

Query: 1   MGANFSALFRDPNGAT--PGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRG 58
           MG   S L  D + ++       +K GLGD PE+CVA+I+ +LDP EIC+ ++LNRAFRG
Sbjct: 1   MGVAHSDLHNDLSSSSCFGDRNLSKLGLGDFPEACVAMIVENLDPVEICRFSKLNRAFRG 60

Query: 59  ASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTG 118
           AS AD VWESKLPPNYR ++E++ G   ++L KR++Y  LCR+NSFD GTKKVW+DK T 
Sbjct: 61  ASWADCVWESKLPPNYRDVLEKILGGFPENLQKRDLYTFLCRINSFDDGTKKVWIDKRTS 120

Query: 119 GVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYS 178
           GVCLSISAKGL+ITGIDDRRYW+HIPT+ESRF+SVAYLQQIWWFEVDGE++FPFP GTYS
Sbjct: 121 GVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYS 180

Query: 179 IFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYH 238
           IF RLQLGR+ K FGRR+C+TE VHGWD KPV+FQLWT DGQ++SSQC+L E G W+ YH
Sbjct: 181 IFFRLQLGRSGKWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYH 240

Query: 239 IGDFIVENGNL-LTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKHF 288
            GDF+V   N   TKIKFS+ QIDCTHTKGGL LDSV++ PS C  +LK F
Sbjct: 241 AGDFVVRESNRSSTKIKFSITQIDCTHTKGGLSLDSVVVYPSSCKGQLKRF 291

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2195042	291	PP2-A12 "phloem protein 2-A12"	0.923	0.914	0.704	4.4e-107
TAIR|locus:2015238	289	PP2-A11 "phloem protein 2-A11"	0.989	0.986	0.618	1e-100
TAIR|locus:2100997	291	PP2-A13 "phloem protein 2-A13"	0.982	0.972	0.612	3.4e-93
TAIR|locus:2173078	291	PP2-A14 "phloem protein 2-A14"	0.979	0.969	0.523	2.6e-79
TAIR|locus:2085236	300	PP2-A15 "phloem protein 2-A15"	0.947	0.91	0.550	1.8e-78
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.840	0.889	0.301	3.6e-25
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.659	0.565	0.302	4.4e-25
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.861	0.813	0.307	2e-24
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.829	0.746	0.279	1.6e-22
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.590	0.588	0.298	6e-22

TAIR|locus:2195042 PP2-A12 "phloem protein 2-A12" [Arabidopsis thaliana (taxid:3702)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 188/267 (70%), Positives = 223/267 (83%)

Query:    23 KPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVF 82
             KPGLGDLPE+CVA+I+ +LDP EIC+ ++LNRAFRGAS AD VWESKLP NYR ++E++ 
Sbjct:    25 KPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKIL 84

Query:    83 GDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNH 142
             G   ++L KR +YA L R+NSFD  TKKVW+DK T GVCLSISAKGL+ITGIDDRRYW+H
Sbjct:    85 GGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSH 144

Query:   143 IPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIFIRLQLGRASKRFGRRICSTEHV 202
             IPT+ESRF+SVAYLQQIWWFEVDGE++FPFP GTYSIF RLQLGR+ K FGRR+C+TE V
Sbjct:   145 IPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQV 204

Query:   203 HGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIGDFIVENGNLL-TKIKFSMMQID 261
             HGWD KPV+FQLWT DGQ++SSQC+L E G W+ YH GD +V   N   TKIKFSM QID
Sbjct:   205 HGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKFSMTQID 264

Query:   262 CTHTKGGLCLDSVLICPSKCTERLKHF 288
             CTHTKGGL LDSV++ PS C ++LK F
Sbjct:   265 CTHTKGGLSLDSVVVYPSSCKDQLKRF 291

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2015238 PP2-A11 "phloem protein 2-A11" [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 177/286 (61%), Positives = 225/286 (78%)

Query:     1 MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
             MG+ FS   ++ +         +PGLGDLPESCVALI+ +LDP EIC+ ++LN AF GAS
Sbjct:     1 MGSGFSLFQKNLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGAS 60

Query:    61 LADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGV 120
              ADFVWESKLPP+Y+ ++E++ G    +L KR+I+  L R+NSFD G KK W+DK TGG+
Sbjct:    61 WADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGL 120

Query:   121 CLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIF 180
             CL  SAKGL+ITGIDDRRYW+HIP+++SRF SVAY+QQIWWF+VDGE++FPFPAGTYS++
Sbjct:   121 CLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVY 180

Query:   181 IRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGKWVQYHIG 240
              RLQLG+  KRFG ++  TE VHGW+ KPV+FQL T DGQH+SSQC+L E G W  YH G
Sbjct:   181 FRLQLGKPGKRFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTEAGNWSHYHAG 240

Query:   241 DFIV-ENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERL 285
             DF+V ++ +  TKIKFSM QIDCTHTKGGLC+DSV++ PS C +RL
Sbjct:   241 DFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDRL 286

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2100997 PP2-A13 "phloem protein 2-A13" [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 177/289 (61%), Positives = 215/289 (74%)

Query:     1 MGANFSALFRDPN-GATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGA 59
             MGAN S     P         + K  L DLPE+CVALI+  LDP EIC+LARLNR FR A
Sbjct:     1 MGANISG--GSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRA 58

Query:    60 SLADFVWESKLPPNYRTLIEEVFGDLK-KDLGKREIYARLCRMNSFDGGTKK-VWLDKST 117
             S ADF+WESKLP NYR +  +VF ++    L K+++YA+L + N FD GTK+ +W+DK+T
Sbjct:    59 SSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKQELWIDKNT 118

Query:   118 GGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTY 177
             G +CLSIS+K L ITGIDDRRYW+HIPT+ESRF S AY+QQIWWFEV GE E  FP+GTY
Sbjct:   119 GRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTY 178

Query:   178 SIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNE-PGKWVQ 236
             S+F R+QLG+ SKR GRRIC++EH+HGWD KPV+FQL TSD Q A S C LN  PG W  
Sbjct:   179 SLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNPGSWSH 238

Query:   237 YHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERL 285
             YH+GDF V N ++ T IKFSM QIDCTHTKGGLC+DSVLI P +C + +
Sbjct:   239 YHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKECAKEV 287

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2173078 PP2-A14 "phloem protein 2-A14" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 154/294 (52%), Positives = 202/294 (68%)

Query:     1 MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
             MGA  S++ R    + P FA    GL D+PE+C+  +   ++P EIC LAR+N++F  AS
Sbjct:     1 MGAASSSIVR----SEP-FAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRAS 55

Query:    61 LADFVWESKLPPNYRTLIEEVFGDLK----KD---LGKREIYARLCRMNSFDGGTKKVWL 113
              +D VWE KLP NY+ L+  +  D +    KD     K+EIYARLCR N FD GTK+ WL
Sbjct:    56 RSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWL 115

Query:   114 DKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFP 173
             DK +G V L+IS K + ITGIDDRRYW HI ++ESRF S+ YL+QIWW E  G++ F F 
Sbjct:   116 DKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFA 175

Query:   174 AGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGK 233
              G YS+  ++QLG+  ++ GR+ CS + VHGWD KPV+FQL TSDGQ A S+  L+E G+
Sbjct:   176 PGKYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDESGR 235

Query:   234 WVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPSKCTERLKH 287
             WV +H GDF+VEN N    +KFSM+QIDCTHTKGGLCLD V+ICP +   + K+
Sbjct:   236 WVYHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEYRGKYKY 289

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2085236 PP2-A15 "phloem protein 2-A15" [Arabidopsis thaliana (taxid:3702)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 159/289 (55%), Positives = 198/289 (68%)

Query:     1 MGANFSALFRDPNGATPGFAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGAS 60
             MG++ S L    N  T G A   PGLGD+PESCVA +   L P EIC LA LNR+FRGA+
Sbjct:     1 MGSSLSNL----NDGTNGLAMG-PGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAA 55

Query:    61 LADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGV 120
              +D VWE KLP NY+ L++ +  +    L K++I+A L R   FD   K+VW+D+ TG V
Sbjct:    56 SSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRV 115

Query:   121 CLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPAGTYSIF 180
             C++ISA+G++ITGI+DRRYWN IPTEESRF  VAYLQQIWWFEVDG V F  P G YS+ 
Sbjct:   116 CMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLS 175

Query:   181 IRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCIL-----NEP-GK- 233
              R+ LGR +KR GRR+C  E  HGWD KPV+F L TSDGQ AS +  L     NE  GK 
Sbjct:   176 FRIHLGRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKH 235

Query:   234 ----WVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICP 278
                 W++Y +G+FIV      T+I++SM QIDCTH+KGGLC+DSV I P
Sbjct:   236 KRGYWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINP 284

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 79/262 (30%), Positives = 129/262 (49%)

Query:    30 PESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLI--EEVFGDLKK 87
             PE C++ II   +P + C  A +++ F     +D +WE  LP +Y +LI    VF     
Sbjct:    18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS--- 74

Query:    88 DLGKREIYARLCRMNS-FDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTE 146
                K+E+Y  LC     FD   K VWL+K++G  CL +SA  L+I   D+ +YW  IP  
Sbjct:    75 ---KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIP 131

Query:   147 ESRFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFIRLQLGRASKRFGRRICSTEHVHG 204
             ESRF  VA L+ + WFE+ G        P   YS +I  + G   K +G +  + E   G
Sbjct:   132 ESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFK-G-VDKCYGFQNVAIEAAVG 189

Query:   205 W-DRKPVQFQLWTSDGQHASSQCILN----EPGKWVQYHIGDFIVENGNLLT-KIKFSMM 258
                ++P +  +  S+      + ++     E G W++  +G+F  + G +   +I+ S +
Sbjct:   190 VVGQEPSRRLICFSEAIRRGRRNVVKPKQREDG-WMEIELGEFFNDGGIMDNDEIEMSAL 248

Query:   259 QIDCTHTKGGLCLDSVLICPSK 280
             +    + K GL +  + I P+K
Sbjct:   249 ETKQLNRKCGLIIQGIEIRPAK 270

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
 Identities = 62/205 (30%), Positives = 104/205 (50%)

Query:    29 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKD 88
             LPE C++ +I    P + C +A ++++ + A+ +D VWE  LP  Y +L+ +        
Sbjct:    35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQS----ANH 90

Query:    89 LGKREIYARLCRMNSF--DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTE 146
             L K+EI+  L   NS   + G K  W++K++G  C  +SA  L I   D   YW  I   
Sbjct:    91 LSKKEIFLSLAD-NSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVP 149

Query:   147 ESRFTSVAYLQQIWWFEVDGEVEFPFPA-GT-YSIFIRLQLGRASKRFGRRICSTEHVHG 204
             ES+F  VA L+ + WFEV G++     + GT YS+++  +     + +G  +   E   G
Sbjct:   150 ESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANG-RSYGFDLVPVEAGVG 208

Query:   205 W-----DRKPVQFQLWTSDGQHASS 224
             +      +K V F+   +D + A+S
Sbjct:   209 FVGKVATKKSVYFESGNADSRSATS 233

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 84/273 (30%), Positives = 131/273 (47%)

Query:    26 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDL 85
             L DLPE CV++I+    P + C LA +++ F  A  +D VWE  +PP Y +LI +     
Sbjct:    36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQ--SRA 93

Query:    86 KKDLGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIP 144
              K L K+E+Y  LC  +   D G K +W++K+    C+ ISA  LAI   +  + W  IP
Sbjct:    94 FKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIP 153

Query:   145 TEESRFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFIRLQLGRASKRFGRRICSTE-- 200
               ++RF +VA L ++  FE+ G +      P   YS +I  +  + +  +G    + E  
Sbjct:   154 DPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYK--KLNICYGFENVAVEVV 211

Query:   201 -HVHGWD-----RKPVQFQLWTSDGQHA----SSQCILNEPGK--WVQYHIGDFIVENGN 248
               V G D     R+ + F   T D Q          +  E  K  W++  IG+F  E G 
Sbjct:   212 VGVVGQDLEESCRRYICFDE-TMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGG- 269

Query:   249 LLTKIKFSMMQIDCT--HTKGGLCLDSVLICPS 279
             LL   +  M+ ++    H K GL +  + I P+
Sbjct:   270 LLNDDEIEMVALEAKQRHWKRGLIIQGIEIRPT 302

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 75/268 (27%), Positives = 121/268 (45%)

Query:    29 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEE--VFGDLK 86
             LPE C++ II    P + C  A +++ F  A  +D VW+  LPP Y +L+    VF    
Sbjct:    64 LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS-- 121

Query:    87 KDLGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPT 145
                 K+E+Y  LC      + G K  WL+K++G  C+ +S+K L IT      YW  I  
Sbjct:   122 ----KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISI 177

Query:   146 EESRFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFIRLQ-------LGRASKRFGRRI 196
              ESRF  +A L  + WFE+ G+       P   YS +I  +       LG      G  +
Sbjct:   178 PESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGL 237

Query:   197 CSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGK----WVQYHIGDFIVENGNLLTK 252
                E      ++ + F +   D +       + +P +    W++  +G+F   N     +
Sbjct:   238 VGQES----SKRFIYF-IGPRDRRGRRETRDVTKPDQREDGWMEAELGEFF--NEERCDE 290

Query:   253 IKFSMMQIDCTHTKGGLCLDSVLICPSK 280
             I+FS+++I     K GL +  +   P+K
Sbjct:   291 IEFSVIEIKSPSWKSGLIIQGIEFRPTK 318

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
 Identities = 52/174 (29%), Positives = 86/174 (49%)

Query:    29 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKD 88
             LPE+CVA I+    P +    A ++  FR A  +DFVWE  LP +Y  +I       +  
Sbjct:     3 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIF 62

Query:    89 LGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEES 148
               K+E+Y  LC     D G K   ++K +G +   +S++ L+IT  D R YW+  P  +S
Sbjct:    63 SSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDS 122

Query:   149 RFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFIRLQLGRASKRFGRRICSTE 200
             RF+    L    W E+ G+++     P   Y  ++ +++   S+ +G  +   E
Sbjct:   123 RFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKV--TSRAYGLDLVPAE 174

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LN77	P2A12_ARATH	No assigned EC number	0.7041	0.9236	0.9140	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0018025501 f-box family protein (298 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam14299	154	pfam14299, PP2, Phloem protein 2	5e-59

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  185 bits (471), Expect = 5e-59
 Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 20/168 (11%)

Query: 118 GGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPF--PAG 175
           G  C  +SA+ L+IT  DD RYW  IP  ESRF+ VA L  + W E+ G++      P  
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 176 TYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDGQHASSQCILNEPGK-- 233
           TYS ++  +L              +  +GWD KPV+F +   DGQ +  +  +  P K  
Sbjct: 61  TYSAYLVFKL-------------ADRAYGWDEKPVEFSVSVPDGQKSRQERYVCLPEKRG 107

Query: 234 --WVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCLDSVLICPS 279
             W++  +G+F  E G    +++FSM ++D  H KGGL +D + I P 
Sbjct: 108 DGWMEIEVGEFFNEGGE-DGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.58
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.23
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.23
PF06881	109	Elongin_A: RNA polymerase II transcription factor	93.1
KOG3926	332	consensus F-box proteins [Amino acid transport and	86.41
KOG2997	366	consensus F-box protein FBX9 [General function pre	83.29

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=8e-61  Score=410.94  Aligned_cols=148  Identities=36%  Similarity=0.740  Sum_probs=136.7

Q ss_pred             CceEEEEeeccceeecCCCCCceeeeeCCccccccceEEeeeeEEEEeeEEeecC--CCCceEEEEEEEeccccccccce
Q 023065          118 GGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFIRLQLGRASKRFGRR  195 (288)
Q Consensus       118 GkkCymLSAR~L~ItWgdd~~YW~Wi~~peSRF~EVAeL~~VcWLEI~G~i~t~l--p~t~Y~ay~v~kl~~~~~~~~~~  195 (288)
                      ||||||||||+|+|||||||+||+|+++|+|||.|||||++||||||+|+|++++  |+|+|+||||||+          
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl----------   70 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKL----------   70 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEe----------
Confidence            8999999999999999999999999999999999999999999999999999994  9999999999999          


Q ss_pred             eeccccccccCCCCeEEEEEecCCce--eeeeeee--cCCCcEEEEEeeeEEEcCCCceeEEEEEEEEeeCCCccceEEE
Q 023065          196 ICSTEHVHGWDRKPVQFQLWTSDGQH--ASSQCIL--NEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCL  271 (288)
Q Consensus       196 v~~~~~~~Gw~~~Pv~~~l~~~~g~~--~~~~~~l--~~~DgW~EielGEF~~~~~~~~~eV~fsl~E~~~~~wK~GLiV  271 (288)
                         ++++|||+..|+++++++++++.  +.+.+.+  .+.|||||||+|||+++++ +++||+|+|+|+++++||+||||
T Consensus        71 ---~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~-~~~ev~f~~~E~~~~~wK~GLiv  146 (154)
T PF14299_consen   71 ---KDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGG-DDGEVEFSMYEVDSGHWKGGLIV  146 (154)
T ss_pred             ---cCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCC-CCcEEEEEEEEecCCcccCeEEE
Confidence               57899999999999999998876  2233333  3469999999999999975 78999999999999999999999


Q ss_pred             EEEEEEec
Q 023065          272 DSVLICPS  279 (288)
Q Consensus       272 ~GIeIRPk  279 (288)
                      +|||||||
T Consensus       147 ~GieIRPK  154 (154)
T PF14299_consen  147 EGIEIRPK  154 (154)
T ss_pred             EEEEEecC
Confidence            99999998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.58  E-value=2.7e-08  Score=68.57  Aligned_cols=44  Identities=23%  Similarity=0.501  Sum_probs=39.7

Q ss_pred             CCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccC
Q 023065           26 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESK   69 (288)
Q Consensus        26 ~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~f   69 (288)
                      +.+||+|.+..|+++++|.|.++++.||+.|+.++.++.+|.++
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~   44 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRL   44 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence            57899999999999999999999999999999999999999875

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.23  E-value=2e-07  Score=63.99  Aligned_cols=45  Identities=24%  Similarity=0.524  Sum_probs=38.9

Q ss_pred             CCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccC
Q 023065           25 GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESK   69 (288)
Q Consensus        25 ~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~f   69 (288)
                      .|.+||++++.+|++++++.|.++++.||+.|+.+.+++..|.++
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            356899999999999999999999999999999999999999764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.23  E-value=1.1e-06  Score=57.63  Aligned_cols=40  Identities=23%  Similarity=0.497  Sum_probs=38.5

Q ss_pred             cchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhcc
Q 023065           29 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWES   68 (288)
Q Consensus        29 LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~   68 (288)
                      ||++++..|+++++|.|.+++++||+.||.+.+.+.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=93.10  E-value=0.077  Score=43.03  Aligned_cols=71  Identities=18%  Similarity=0.323  Sum_probs=57.0

Q ss_pred             CCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCCCCCchhhhhhhhcCCCCCCcHHHHHHHhh
Q 023065           25 GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLC   99 (288)
Q Consensus        25 ~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~~~i~~~~~~~~~~~~sKKeLy~~L~   99 (288)
                      .++++|-+.|.-||...+|....++-.-|+-+  +-++|.+|.+|+=.||+.-.....  +....+-+++|.++.
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~--~~~~~~Wr~~Y~~~~   73 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK--PKEPESWRELYEKLK   73 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc--ccccchHHHHHHHHH
Confidence            57899999999999999999999999999755  567999999999999975222111  123357899999986

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=86.41  E-value=0.6  Score=44.40  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=57.3

Q ss_pred             CCCCCCCcchHHHHHHHhcCC-hHHHHHHhhccHhhhccccchhhhccCCCCCch--hhhhhhhcCCCCCCcHHHHHHHh
Q 023065           22 AKPGLGDLPESCVALIIGSLD-PTEICKLARLNRAFRGASLADFVWESKLPPNYR--TLIEEVFGDLKKDLGKREIYARL   98 (288)
Q Consensus        22 ~~~~~~~LPe~cia~ils~ts-P~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~~--~i~~~~~~~~~~~~sKKeLy~~L   98 (288)
                      .+..|-|||++|+-+||-+++ -+|.--+|.|-++..-..+.+-+|.+..--.|.  +|-....-+--....-|++|+.|
T Consensus       198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L  277 (332)
T KOG3926|consen  198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQL  277 (332)
T ss_pred             CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHH
Confidence            677899999999999999865 899999999999999999999999987654332  23222110000112357889888


Q ss_pred             hc
Q 023065           99 CR  100 (288)
Q Consensus        99 ~~  100 (288)
                      -+
T Consensus       278 ~r  279 (332)
T KOG3926|consen  278 RR  279 (332)
T ss_pred             HH
Confidence            54

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=83.29  E-value=0.45  Score=46.13  Aligned_cols=79  Identities=19%  Similarity=0.245  Sum_probs=54.7

Q ss_pred             CCCcchHHHHHHHhcC-----ChHHHHHHhhccHhhhccccchhhhccCCCCCchhhhhhhhc---CCCCCCcHHHHHHH
Q 023065           26 LGDLPESCVALIIGSL-----DPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFG---DLKKDLGKREIYAR   97 (288)
Q Consensus        26 ~~~LPe~cia~ils~t-----sP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~~~i~~~~~~---~~~~~~sKKeLy~~   97 (288)
                      |..||+|.+-.||...     +-++-.++|+|++.|+-+|..|.+|..++=.-|+.-+-....   .+.-..|-+++|+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~  186 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE  186 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence            6789999998887654     459999999999999999999999998876555432211110   01112466777765


Q ss_pred             hhcc-ceecC
Q 023065           98 LCRM-NSFDG  106 (288)
Q Consensus        98 L~~p-vlld~  106 (288)
                        +| |.+|+
T Consensus       187 --RpRvrFdG  194 (366)
T KOG2997|consen  187 --RPRVRFDG  194 (366)
T ss_pred             --Ccceeecc
Confidence              45 55553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 44/243 (18%), Positives = 74/243 (30%), Gaps = 78/243 (32%)

Query: 37  IIGSLDPTEICKLARLNRAF-----RGASLAD-FVWESKLPPNYRTLIEEVFGDLKKDLG 90
           II S D           R F     +   +   FV E  L  NY+ L+  +  + ++   
Sbjct: 54  IIMSKDAVS-----GTLRLFWTLLSKQEEMVQKFV-EEVLRINYKFLMSPIKTEQRQPSM 107

Query: 91  KREIYA----RLCRMNS-FD-------------------------------GGTKKVWLD 114
              +Y     RL   N  F                                 G+ K W+ 
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV- 166

Query: 115 KSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPFPA 174
                VCLS   +      I    +W ++    S  T +  LQ++  +++D         
Sbjct: 167 --ALDVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQKL-LYQIDPNWT-SRSD 218

Query: 175 GTYSIFIRLQLGRASKRFGRRICSTEHVHG-------WDRKPVQ-FQLWTSDGQHASSQC 226
            + +I +R+   +A  R  R + S  + +         + K    F L           C
Sbjct: 219 HSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWNAFNL----------SC 266

Query: 227 -IL 228
            IL
Sbjct: 267 KIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.71
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.27
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.71
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.64
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.29
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.2
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	91.94

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.71  E-value=8.7e-09  Score=71.51  Aligned_cols=48  Identities=15%  Similarity=0.268  Sum_probs=40.5

Q ss_pred             CCCCCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccC
Q 023065           22 AKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESK   69 (288)
Q Consensus        22 ~~~~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~f   69 (288)
                      ....+.+||++++..|+++++|.|.+++++||+.|+.++.++.+|.++
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            345789999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.27  E-value=1.6e-07  Score=87.93  Aligned_cols=75  Identities=20%  Similarity=0.353  Sum_probs=60.3

Q ss_pred             CCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCCCCCc---hhhhhhhhcCC----------C--CCC
Q 023065           25 GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNY---RTLIEEVFGDL----------K--KDL   89 (288)
Q Consensus        25 ~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~---~~i~~~~~~~~----------~--~~~   89 (288)
                      .|++||.+++-+|+||++|.|+||+|+||+.+|..|+.+.+|..||-.|+   ++|-..+.+..          .  .+.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~   83 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFF   83 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CC
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCccccccccccc
Confidence            47899999999999999999999999999999999999999999998775   44544433210          0  134


Q ss_pred             cHHHHHHHhh
Q 023065           90 GKREIYARLC   99 (288)
Q Consensus        90 sKKeLy~~L~   99 (288)
                      .++.+|.+=|
T Consensus        84 ~~~~~y~~~~   93 (312)
T 3l2o_B           84 DYMAVYRMCC   93 (312)
T ss_dssp             CHHHHHHHHC
T ss_pred             cHHHHHHhcC
Confidence            5789999865

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.71  E-value=1.4e-05  Score=74.46  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=61.6

Q ss_pred             CCCCCCcchHHHHHHHhcCChHHHH-HHhhccHhhhccccchhhhccCCCCCchhhhhhhhcCCCCCCcHHHHHHHhh-c
Q 023065           23 KPGLGDLPESCVALIIGSLDPTEIC-KLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLC-R  100 (288)
Q Consensus        23 ~~~~~~LPe~cia~ils~tsP~Dac-r~a~vs~~fr~aa~sD~vW~~fLP~d~~~i~~~~~~~~~~~~sKKeLy~~L~-~  100 (288)
                      ++.+..||++.+..||+++.|.|.+ |+++||+.+|..++++.+|.+.+...  .+..... ..+...+-|.+|+.-- .
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~-~~~~~~~Wk~~y~~~~~g  124 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGS-ADEERDHWQQFYFLSKRR  124 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC------CCSCHHHHHHHHHHC
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Ccccccc-cCCCCCChhhhheheecc
Confidence            5678999999999999999999999 99999999999999999999887654  1111111 1123456899998753 2


Q ss_pred             cceecCC
Q 023065          101 MNSFDGG  107 (288)
Q Consensus       101 pvlld~g  107 (288)
                      -+||.+.
T Consensus       125 RNLL~NP  131 (297)
T 2e31_A          125 RNLLRNP  131 (297)
T ss_dssp             CCCSSCS
T ss_pred             cceeecC
Confidence            4666553

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.64  E-value=1.4e-05  Score=74.08  Aligned_cols=48  Identities=19%  Similarity=0.383  Sum_probs=44.6

Q ss_pred             CCCCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCC
Q 023065           23 KPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKL   70 (288)
Q Consensus        23 ~~~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fL   70 (288)
                      ..-|..||++++..||++++|.|.|++++||+.|+..++++.+|.+++
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence            345889999999999999999999999999999999999999999765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.29  E-value=4e-05  Score=70.98  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=42.1

Q ss_pred             CCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccc-hhhhccCC
Q 023065           26 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLA-DFVWESKL   70 (288)
Q Consensus        26 ~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~s-D~vW~~fL   70 (288)
                      |..||++.+.+|+++++|.|.|++++||+.++..+++ +.+|.+++
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6689999999999999999999999999999998887 89999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.20  E-value=4.4e-05  Score=70.87  Aligned_cols=48  Identities=15%  Similarity=0.367  Sum_probs=43.9

Q ss_pred             CCCcchH----HHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCCCCC
Q 023065           26 LGDLPES----CVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPN   73 (288)
Q Consensus        26 ~~~LPe~----cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d   73 (288)
                      |..||++    .+.+||++++|.|.|++++||+.|+..++.+.+|.+++-..
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            5679999    99999999999999999999999999999999999876543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.73  E-value=0.00068  Score=60.81  Aligned_cols=48  Identities=15%  Similarity=0.268  Sum_probs=41.4

Q ss_pred             CCCCCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccC
Q 023065           22 AKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESK   69 (288)
Q Consensus        22 ~~~~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~f   69 (288)
                      ....+++||++++..|+++++++|.++++.|++.|+.++.+...|.++
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            456789999999999999999999999999999999988666667653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.15  E-value=0.024  Score=54.49  Aligned_cols=35  Identities=6%  Similarity=0.115  Sum_probs=29.3

Q ss_pred             CCCCcchHHHHHHHhcCC-hHHHHHHhhccHhhhcc
Q 023065           25 GLGDLPESCVALIIGSLD-PTEICKLARLNRAFRGA   59 (288)
Q Consensus        25 ~~~~LPe~cia~ils~ts-P~Dacr~a~vs~~fr~a   59 (288)
                      .+++||++++.+|+++++ ++|++++|.||+.++.+
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            468899999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=91.94  E-value=0.07  Score=51.28  Aligned_cols=34  Identities=9%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             CCCcchHHHHHHHhcC-ChHHHHHHhhccHhhhcc
Q 023065           26 LGDLPESCVALIIGSL-DPTEICKLARLNRAFRGA   59 (288)
Q Consensus        26 ~~~LPe~cia~ils~t-sP~Dacr~a~vs~~fr~a   59 (288)
                      ..+||++|+.+|++++ +++|+++++.||+.|+.+
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            3479999999999999 899999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.001

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 26  LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKL-----PPNYRTLIEE 80
           +  LP+     ++  L+P ++ + A+  R +R  +  + +W  K               +
Sbjct: 19  ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK 78

Query: 81  VFGDLKKDLGKREIYARLCRMNS 103
           V          +  Y R  R+++
Sbjct: 79  VIKPGFIHSPWKSAYIRQHRIDT 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.83
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.82
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.07
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.78

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=9.9e-10  Score=71.92  Aligned_cols=41  Identities=17%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             CCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhh
Q 023065           26 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVW   66 (288)
Q Consensus        26 ~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW   66 (288)
                      ++.||++++..|+++++|.|.||+++||+.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            47899999999999999999999999999999999999998

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2e-09  Score=81.86  Aligned_cols=74  Identities=16%  Similarity=0.186  Sum_probs=54.9

Q ss_pred             CCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCCCCCchhhh-----hhhhcCCCCCCcHHHHHHHh
Q 023065           25 GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLI-----EEVFGDLKKDLGKREIYARL   98 (288)
Q Consensus        25 ~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~~~i~-----~~~~~~~~~~~sKKeLy~~L   98 (288)
                      -|..||+|++.+|+++++|.|+|++|+||+.|+.++.+|.+|.+.+-.++....     ...........+-|++|.+.
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~   96 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ   96 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHH
Confidence            478899999999999999999999999999999999999999876544332110     00000111234579999875

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=3.1e-07  Score=69.76  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=39.5

Q ss_pred             CCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccch-hhhccC
Q 023065           26 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLAD-FVWESK   69 (288)
Q Consensus        26 ~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD-~vW~~f   69 (288)
                      |.+||+|.+..|+++++|.|.|++|.||+.|+..+++| .+|.+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            46799999999999999999999999999999877665 789864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3e-06  Score=65.73  Aligned_cols=47  Identities=15%  Similarity=0.391  Sum_probs=42.3

Q ss_pred             CCCcch----HHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCCCC
Q 023065           26 LGDLPE----SCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPP   72 (288)
Q Consensus        26 ~~~LPe----~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~   72 (288)
                      |..||.    |-+..|+|+++|.|.|++|+||+.|+..++++.+|.++.-.
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            446775    99999999999999999999999999999999999987643