Citrus Sinensis ID: 023073

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVRKSMESEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEccccccccccccEEEEcccccccccHHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccEEEEEccccccccccccccccccccccEEEEEEEEcccccccc
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccHHEEcccccccccccccEEEEEccccEEEEEEccccHHHHHHHHHHHcHHHHHcEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccHHcccccccHEEEEHEEHccccccccccccccccccccccccccHHHHHHcccEEccccccEEEEEEcccccccccccccccccEEEEcEEEEcEEEEEccccc
makprysrfptrkssssTLILTLLIMFTFAILILLAFGIlsmpsssgdsrkandLSSIVRKSmesegdegraEQWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflarGRDKIIRDIEKRIadftffplengeglqvlhyeagqkyephfdyfmdefntknggQRMATVLMYLSDveeggetvfpnaqgnisavpwwnelsecgktglsikpkmgDALLFWsmkpdasldpsslhggcpvikgnkwsstKWIRVNEYKV
makprysrfptrksssstLILTLLIMFTFAILILLAFGILSMpsssgdsrkandLSSIVRKsmesegdegraeQWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflargrdkiIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSlhggcpvikgnkwsstkwirvneykv
MAKPRYSRFPTRKsssstliltllimftfailillafgilsMPSSSGDSRKANDLSSIVRKSMESEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLArgrdkiirdiekriADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
*****************TLILTLLIMFTFAILILLAFGIL*********************************QWVEVISWEPRAFVYHNFLSKEECEYLINLATP**************************FLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKP*******SLHGGCPVIKGNKWSSTKWIRVN****
****************STLILTLLIMFTFAILILLAFGIL***********************ESEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTV**********SRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK*
***************SSTLILTLLIMFTFAILILLAFGILSMP************SSIVR************EQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMR*********************GTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
**************SSSTLILTLLIMFTFAILILLAFGILSMPS********NDLSSIVRKSMESEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN****
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVRKSMESEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
Q20065539 Prolyl 4-hydroxylase subu yes no 0.648 0.345 0.354 7e-30
P54001534 Prolyl 4-hydroxylase subu yes no 0.630 0.338 0.352 9e-30
P16924516 Prolyl 4-hydroxylase subu yes no 0.627 0.348 0.354 1e-28
Q60715534 Prolyl 4-hydroxylase subu yes no 0.630 0.338 0.343 2e-28
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.630 0.338 0.338 7e-28
P13674534 Prolyl 4-hydroxylase subu yes no 0.630 0.338 0.338 7e-28
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.630 0.338 0.338 1e-27
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.641 0.344 0.338 2e-26
Q10576559 Prolyl 4-hydroxylase subu no no 0.668 0.343 0.317 2e-25
O15460535 Prolyl 4-hydroxylase subu no no 0.623 0.334 0.326 3e-25
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 23/209 (11%)

Query: 76  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 135
           VE++ ++P A ++ N +   E E +  LA+P ++++TV +S TG+ + +  R S   +L 
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377

Query: 136 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGG 191
              D +I  + +RI DFT       E LQV +Y  G  Y+PHFD+   E    F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437

Query: 192 QRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 251
            R+ATVL Y+S  E GG TVF             N L      G ++ P   DAL ++++
Sbjct: 438 NRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNL 478

Query: 252 KPDASLDPSSLHGGCPVIKGNKWSSTKWI 280
           + D   D  + H  CPV+ G KW S KWI
Sbjct: 479 RRDGEGDLRTRHAACPVLLGVKWVSNKWI 507
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
225468574288 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.996 0.802 1e-134
147800995288 hypothetical protein VITISV_014644 [Viti 1.0 0.996 0.802 1e-134
357483925289 Prolyl 4-hydroxylase alpha-2 subunit [Me 0.996 0.989 0.795 1e-133
240256489289 iron ion binding / oxidoreductase/ oxido 1.0 0.993 0.784 1e-133
356540840290 PREDICTED: prolyl 4-hydroxylase subunit 0.996 0.986 0.799 1e-132
363806698289 uncharacterized protein LOC100806046 [Gl 0.993 0.986 0.801 1e-132
255579590287 prolyl 4-hydroxylase alpha subunit, puta 0.993 0.993 0.806 1e-130
449491267287 PREDICTED: prolyl 4-hydroxylase subunit 0.996 0.996 0.809 1e-129
449434114287 PREDICTED: prolyl 4-hydroxylase subunit 0.996 0.996 0.809 1e-129
21537370287 putative prolyl 4-hydroxylase, alpha sub 0.996 0.996 0.743 1e-124
>gi|225468574|ref|XP_002263060.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296084059|emb|CBI24447.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/288 (80%), Positives = 267/288 (92%), Gaps = 1/288 (0%)

Query: 1   MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVR 60
           MAKPRY RFP RKSSSST++L++L+MF+F +L+LLA G+LS+PS SGDS +ANDLS+IV 
Sbjct: 1   MAKPRYPRFPPRKSSSSTVVLSMLLMFSFVVLVLLALGLLSIPSHSGDSPRANDLSTIVH 60

Query: 61  KSME-SEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 119
           +++E S+G++G+ E W EVISWEPRAFVYHNFLSK+ECEYLI LA PHM+KSTVVDS TG
Sbjct: 61  RTVERSDGNDGKGEPWSEVISWEPRAFVYHNFLSKDECEYLIKLAKPHMQKSTVVDSSTG 120

Query: 120 KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFD 179
           KSKDSRVRTSSGTFL RG+DKIIR IEKR++DFTF P+E+GEGLQ+LHYE GQKYEPH+D
Sbjct: 121 KSKDSRVRTSSGTFLTRGQDKIIRGIEKRLSDFTFLPVEHGEGLQILHYEVGQKYEPHYD 180

Query: 180 YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIK 239
           YF+D++NTKNGGQRMATVLMYLSDVEEGGETVFP A+GN S+VPWWNELS+CGK GLS+K
Sbjct: 181 YFLDDYNTKNGGQRMATVLMYLSDVEEGGETVFPAAKGNFSSVPWWNELSDCGKEGLSVK 240

Query: 240 PKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV 287
           PKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK+
Sbjct: 241 PKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKI 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147800995|emb|CAN64470.1| hypothetical protein VITISV_014644 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|240256489|ref|NP_201407.4| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] gi|332010770|gb|AED98153.1| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356540840|ref|XP_003538892.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Glycine max] Back     alignment and taxonomy information
>gi|363806698|ref|NP_001242522.1| uncharacterized protein LOC100806046 [Glycine max] gi|255647110|gb|ACU24023.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255579590|ref|XP_002530636.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223529809|gb|EEF31744.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449491267|ref|XP_004158845.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434114|ref|XP_004134841.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 1.0 0.993 0.670 1.8e-103
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.996 0.996 0.652 2.8e-98
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.857 0.845 0.724 5.8e-98
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.850 0.841 0.689 2.5e-90
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.731 0.704 0.523 4.6e-57
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.717 0.715 0.533 5.3e-56
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.731 0.702 0.523 1.1e-55
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.682 0.692 0.523 3.2e-49
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.735 0.732 0.385 1.3e-38
TAIR|locus:2125344272 AT4G35820 [Arabidopsis thalian 0.470 0.496 0.522 5.8e-34
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 193/288 (67%), Positives = 219/288 (76%)

Query:     1 MAKPRYSRFPTRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSSSGDSRKANDLSSIVR 60
             MA+PR  R   RK                            +PS++  S KANDL+SIVR
Sbjct:     2 MARPRNHRPSARKSSHSTLVFAVLIMSTFVILILLAFGILSVPSNNAGSSKANDLTSIVR 61

Query:    61 KSMESEG-DEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 119
             K+++  G D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTVVD  TG
Sbjct:    62 KTLQRSGEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTG 121

Query:   120 KSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFD 179
             KS DSRVRTSSGTFLA              +DFTF P+E+GEGLQVLHYE GQKYEPH+D
Sbjct:   122 KSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLHYEIGQKYEPHYD 181

Query:   180 YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIK 239
             YFMDE+NT+NGGQR+ATVLMYLSDVEEGGETVFP A+GN SAVPWWNELSECGK GLS+K
Sbjct:   182 YFMDEYNTRNGGQRIATVLMYLSDVEEGGETVFPAAKGNYSAVPWWNELSECGKGGLSVK 241

Query:   240 PKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV 287
             PKMGDALLFWSM PDA+LDPSSLHGGC VIKGNKWSSTKW+RV+EYKV
Sbjct:   242 PKMGDALLFWSMTPDATLDPSSLHGGCAVIKGNKWSSTKWLRVHEYKV 289
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00013719001
SubName- Full=Chromosome undetermined scaffold_533, whole genome shotgun sequence; (288 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038542001
RecName- Full=Proline iminopeptidase; EC=3.4.11.5; (331 aa)
     •  0.899
GSVIVG00038134001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (500 aa)
     •  0.899
GSVIVG00000690001
RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 6e-85
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 5e-50
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 8e-12
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 2e-08
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  256 bits (655), Expect = 6e-85
 Identities = 115/211 (54%), Positives = 149/211 (70%), Gaps = 1/211 (0%)

Query: 76  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 135
           V+ +SW+PR FVY  FLS  EC++L+ LA   +++S V D+ +GKS  S VRTSSG FL 
Sbjct: 47  VKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLD 106

Query: 136 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMA 195
           + +D ++  IE+RIA +TF P EN E +Q+L YE GQKYEPHFDYF D+ N   GG R A
Sbjct: 107 KRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYA 166

Query: 196 TVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDA 255
           TVLMYLS V++GGETVFPNA+G  +  P  +  SEC   GL++KP  GDA+LF+S+  D 
Sbjct: 167 TVLMYLSTVDKGGETVFPNAEGWENQ-PKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDG 225

Query: 256 SLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 286
             DP SLHG CPVI+G KWS+ KWI +  Y+
Sbjct: 226 VPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE 256

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.96
PHA02813 354 hypothetical protein; Provisional 99.75
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.73
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.7
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.64
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 98.98
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.56
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.56
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.51
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.37
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 98.12
PHA02866 333 Hypothetical protein; Provisional 98.02
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.79
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.76
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.68
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.61
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.28
TIGR02466201 conserved hypothetical protein. This family consis 97.23
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 96.7
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.01
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 95.88
KOG3200224 consensus Uncharacterized conserved protein [Funct 94.93
PHA02923 315 hypothetical protein; Provisional 94.92
COG3826236 Uncharacterized protein conserved in bacteria [Fun 92.99
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.29
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 89.25
PLN02485329 oxidoreductase 87.92
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 87.76
PLN02904357 oxidoreductase 87.46
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 87.27
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 85.68
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 85.63
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 85.61
PLN02216357 protein SRG1 85.2
PLN02276361 gibberellin 20-oxidase 84.54
PF14033501 DUF4246: Protein of unknown function (DUF4246) 84.52
PLN02254358 gibberellin 3-beta-dioxygenase 84.1
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.96
PLN02947374 oxidoreductase 83.78
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.42
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 82.53
PLN02365300 2-oxoglutarate-dependent dioxygenase 82.43
PLN02997325 flavonol synthase 81.94
PLN02403303 aminocyclopropanecarboxylate oxidase 81.13
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 80.87
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 80.48
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-59  Score=435.35  Aligned_cols=216  Identities=53%  Similarity=0.952  Sum_probs=198.6

Q ss_pred             CCCceeEEEEecCCCEEEEcCCCCHHHHHHHHHHhcCCCCcceeEeCCCCCccccceeeccceeecCCchHHHHHHHHHH
Q 023073           70 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI  149 (287)
Q Consensus        70 ~~~~~~~e~ls~~P~i~vi~nfLs~eEC~~Li~~a~~~~~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~v~~~i~~Ri  149 (287)
                      .-.+.|+|+||++|+|++|+||||++||++||+++++.+++|.++++.+|+...+++|||+++|++..+++++++|++||
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri  120 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI  120 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999888777777888999999999987789999999999


Q ss_pred             HhhcCCCCCCCcccEEEEcCCCCccccCcCCcccccccCCCCceEEEEEEeccCCCCCceeeecCCCCCCCCCCcccccc
Q 023073          150 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELS  229 (287)
Q Consensus       150 ~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~llYLND~~eGGeT~Fp~~~~~~~~~~~~~~~~  229 (287)
                      ++++++|.+++|++||+||++||+|++|+|++.+..+...+++|++|+|+||||+++||||+||.++. ....+.++.++
T Consensus       121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~-~~~~~~~~~~s  199 (310)
T PLN00052        121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG-WENQPKDDTFS  199 (310)
T ss_pred             HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc-ccccccccchh
Confidence            99999999999999999999999999999998764444567899999999999999999999998743 22334567789


Q ss_pred             ccCCcCeEEecCCceEEEEecCCCCCCCCCCCccccCCcccccEEEEEeeeeecccc
Q 023073          230 ECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK  286 (287)
Q Consensus       230 ~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~~~  286 (287)
                      +|.+.+++|+|++|+||||+|+++||+.|++++|+||||++|+||++|+|||.++|.
T Consensus       200 ~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~  256 (310)
T PLN00052        200 ECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE  256 (310)
T ss_pred             hhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence            999999999999999999999999999999999999999999999999999999884

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PF14033 DUF4246: Protein of unknown function (DUF4246) Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 3e-65
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 4e-65
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 4e-65
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 8e-63
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 1e-31
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (624), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/215 (55%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 73  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 129
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 7   EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 130 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 187
           +GT+ A              A  T  PLEN EGLQVLHY  GQKYEPH+DYF D  N   
Sbjct: 67  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 126
Query: 188 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 247
           ++GGQR+ T+LMYL+ VEEGGETV PNA+  ++   W    SEC K GL++KP  GDAL+
Sbjct: 127 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 182
Query: 248 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 282
           F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 183 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 1e-105
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 1e-93
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 4e-13
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  304 bits (779), Expect = e-105
 Identities = 124/217 (57%), Positives = 157/217 (72%), Gaps = 6/217 (2%)

Query: 72  AEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSG 131
               V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS+G
Sbjct: 9   WRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTG 68

Query: 132 TFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KN 189
           T+ A+G D +I  IEKR+A  T  PLEN EGLQVLHY  GQKYEPH+DYF D  N   ++
Sbjct: 69  TWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 128

Query: 190 GGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW 249
           GGQR+ T+LMYL+ VEEGGETV PNA+  ++   W    SEC K GL++KP  GDAL+F+
Sbjct: 129 GGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALMFY 184

Query: 250 SMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 286
           S+KPD S DP+SLHG CP +KG+KWS+TKWI V    
Sbjct: 185 SLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG 221
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.92
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.22
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.6
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.87
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.86
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.85
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.39
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 97.29
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 97.15
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 96.98
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 96.65
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 95.95
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 95.87
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 94.18
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 88.88
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 81.84
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=7.1e-55  Score=387.02  Aligned_cols=213  Identities=58%  Similarity=1.005  Sum_probs=195.8

Q ss_pred             CCCceeEEEEecCCCEEEEcCCCCHHHHHHHHHHhcCCCCcceeEeCCCCCccccceeeccceeecCCchHHHHHHHHHH
Q 023073           70 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI  149 (287)
Q Consensus        70 ~~~~~~~e~ls~~P~i~vi~nfLs~eEC~~Li~~a~~~~~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~v~~~i~~Ri  149 (287)
                      ++.+.|+|+||++|+|++|+||||++||++||+++++.+.++.++++.+|....+++|+|+.+|++...++++++|++||
T Consensus         7 ~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri   86 (224)
T 2jig_A            7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRV   86 (224)
T ss_dssp             CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHH
T ss_pred             cccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999988777777889999999999976689999999999


Q ss_pred             HhhcCCCCCCCcccEEEEcCCCCccccCcCCccccccc--CCCCceEEEEEEeccCCCCCceeeecCCCCCCCCCCcccc
Q 023073          150 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNE  227 (287)
Q Consensus       150 ~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~llYLND~~eGGeT~Fp~~~~~~~~~~~~~~  227 (287)
                      .+++++|...+|++||+||++||+|++|+|++....+.  ..+++|++|+++||||+++||||+||..+    ..+.|+.
T Consensus        87 ~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~----~~~~~~~  162 (224)
T 2jig_A           87 AQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAE----QKVTGDG  162 (224)
T ss_dssp             HHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSS----SCCCSTT
T ss_pred             HHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcc----ccccccc
Confidence            99999999999999999999999999999998653221  34689999999999999999999999864    2356788


Q ss_pred             ccccCCcCeEEecCCceEEEEecCCCCCCCCCCCccccCCcccccEEEEEeeeeecccc
Q 023073          228 LSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK  286 (287)
Q Consensus       228 ~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~~~  286 (287)
                      +++|.+.+++|+|++|+||+|+|+++||++|++++|+||||++|+||++++|++.++|+
T Consensus       163 ~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~~  221 (224)
T 2jig_A          163 WSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG  221 (224)
T ss_dssp             SCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCCC
T ss_pred             ccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCcC
Confidence            89999889999999999999999999999999999999999999999999999999986
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 97.94
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.78
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 96.83
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 96.13
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 90.44
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 81.4
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 80.01
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.00014  Score=62.67  Aligned_cols=185  Identities=16%  Similarity=0.185  Sum_probs=89.6

Q ss_pred             EEEEcCCCCHHHHHHHHHHhcCCCCc----c--eeEeCCC-CC-ccccceeeccceeecCCchHHH-----HHHHHHHHh
Q 023073           85 AFVYHNFLSKEECEYLINLATPHMRK----S--TVVDSDT-GK-SKDSRVRTSSGTFLARGRDKII-----RDIEKRIAD  151 (287)
Q Consensus        85 i~vi~nfLs~eEC~~Li~~a~~~~~~----s--~v~~~~~-g~-~~~~~~Rts~~~~l~~~~d~v~-----~~i~~Ri~~  151 (287)
                      .++++|+|+++||+.|.+..+..+..    .  ....... .. ......+.-....-....+.+.     ..|.+.+..
T Consensus        24 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  103 (296)
T d2a1xa1          24 FLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVEC  103 (296)
T ss_dssp             EEEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE-----EECCEEECCTTSHHHHHHHHCHHHHHHHHH
T ss_pred             EEEccCcCCHHHHHHHHHHHHHHHhhccccccccccccccccccccCccccchhhhhhhhhchhHHhhcccHHHHHHHHH
Confidence            46899999999999998888542111    0  0000000 00 0000000000000000112222     244555566


Q ss_pred             hcCCCCCCCcccEEEE-cCCCC---ccccCcCCcccccccCCCCceEEEEEEeccCCC-CCceeee-cCCCCCC---CCC
Q 023073          152 FTFFPLENGEGLQVLH-YEAGQ---KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQGNI---SAV  222 (287)
Q Consensus       152 ~~g~p~~~~E~lqv~r-Y~~G~---~y~~H~D~~~~~~~~~~~~~R~~T~llYLND~~-eGGeT~F-p~~~~~~---~~~  222 (287)
                      +.|-.+......-+.+ ...|.   ...||.|.....   .......+|+.++|.|+. +.|.+.| |......   ...
T Consensus       104 llg~~~~~~~~~~~~k~p~~~~~~~~~~wHqD~~~~~---~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~~~  180 (296)
T d2a1xa1         104 FTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDY  180 (296)
T ss_dssp             HHCSSEEEEEEEEEEECCC--------CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC
T ss_pred             hhccccceecccccccccccccccccCCcccCccccc---cCCccccceeeEeeeeccccccccceeccccccccccccc
Confidence            6663322111122223 23332   245899975321   123456899999999974 5566766 4332100   000


Q ss_pred             Ccc--------ccccc--cCCcCeEEecCCceEEEEecCCCCCCCCCCCccccCCccc-ccEEEEEeeee
Q 023073          223 PWW--------NELSE--CGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK-GNKWSSTKWIR  281 (287)
Q Consensus       223 ~~~--------~~~~~--c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~-G~K~i~~~W~~  281 (287)
                      ..+        ....+  -....+.+.-++|++++|.         +.++|++.|-.+ ..|+++..-+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~---------~~l~Hgs~~N~S~~~R~~l~~~y~  241 (296)
T d2a1xa1         181 PKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFH---------PLLIHGSGQNKTQGFRKAISCHFA  241 (296)
T ss_dssp             -----------CCCCC-CCCSCCEEECBCTTCEEEEC---------TTCCEEECCBCSSSCEEEEEEEEE
T ss_pred             ccccCCcccccccccchhhccceEEeeecCCcEEEEC---------CCeeecCCCCCCcCceEEEEEEEE
Confidence            000        00000  0112456777999999994         699999999664 57888876543
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure