Citrus Sinensis ID: 023209

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPTTTTTATTVTTTTDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRGKKRKYEETEGFQRNVVVKKEEETVTVGGGGGVGVGPLTPSNWTGFWDGEKGIFTVPPLSPLSPYAGISPLRVC
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccEEEcccccEEEEEEcccccccEEEEccccHHHHHHHHHHHHHHHHHcccEEEcccHHcccccccccccccccccccHHHHHHccccccccccccccccccccEEEcccccccccEEEcccccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
MASLNEASTLELISQYLLAdqyftssidhthsfknisnlpqspslfnnptttttattvttttdrdninsrnkpsstlkqrkpacvknvtipqttsfnlmscsnvnddadnpvavknkdpdaaaddnnnnnnnnieekhyrgvrrrpwgryaaeirdpnrkgsrvWLGTFDTAVEAAKAYDNAAFRLRGSKAilnfplevggtldskvevdrgkkrkyeetegfqrnvvvkkeeetvtvgggggvgvgpltpsnwtgfwdgekgiftvpplsplspyagisplrvc
Flexible Loop (DISEMBL)
MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNIsnlpqspslfnnptttttattvttttdrdninsrnkpsstlkqrkpacvknVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDpdaaaddnnnnnnnnieekhyrgvrrrpwgryaaeirdpnrkgsrvWLGTFDTAVEAAKAYDNAAFRLRGSKAIlnfplevggtldskvevdrgkkrkyeetegfqrnvvvkkeeetvtvgggggvgvgplTPSNWTGFWDGEKGIFTvpplsplspyagisplrvc
Low Complexity Region (SEG)
MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPtttttattvttttDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPdaaaddnnnnnnnnIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRGKKRKYEETEGFQRNvvvkkeeetvtvgggggvgvgPLTPSNWTGFWDGEKGIFTVPPLSPLSPYAGISPLRVC
Disordered region (IsUnstruct)
*********LELISQYLLADQYFTSSIDHTH*******************************************************NVTI*****F*************************************************PWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLD***********************************************SNWTGFWDGEKGIFTVPPLS**************
Disordered Region (DISOPRED)
*ASLNEASTLELISQYLLADQYFTSSIDH****************************************************************************************************************VRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV**************************************************TPSNWTGFWDGEKGIFTVPPLSPLSPYAGISPLRVC
Disordered Region (DISEMBL)
MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPTTTTTATTVTTTTDRDNINSR***********PACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRGKKRKYEETEGFQRNVVVKKEEETVTVGGGGGVGVGPLTPSNWTGFWDGEKGIFTVPPLSPLSPYAGISPLRVC
Disordered Region (DISPRO)
******ASTLELISQYLLADQY******************************************************************************************************************KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG******************************************GVGVGPLTPSNWTGFWDGEKGIFTVPPLSPLSPYAGISPLRVC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPTTTTTATTVTTTTDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRGKKRKYEETEGFQRNVVVKKEEETVTVGGGGGVGVGPLTPSNWTGFWDGEKGIFTVPPLSPLSPYAGISPLRVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q40478	291	Ethylene-responsive trans	N/A	no	0.487	0.477	0.598	9e-45
Q9FKG1	241	Ethylene-responsive trans	yes	no	0.785	0.929	0.404	7e-41
Q8VY90	221	Ethylene-responsive trans	no	no	0.501	0.647	0.562	1e-40
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.842	0.851	0.374	7e-40
O80341	300	Ethylene-responsive trans	no	no	0.768	0.73	0.412	4e-37
Q8VZ91	282	Ethylene-responsive trans	no	no	0.856	0.865	0.356	8e-31
Q9LY05	207	Ethylene-responsive trans	no	no	0.322	0.444	0.562	1e-25
O04681	161	Pathogenesis-related gene	N/A	no	0.252	0.447	0.68	5e-24
O80338	243	Ethylene-responsive trans	no	no	0.231	0.271	0.712	7e-24
O80337	268	Ethylene-responsive trans	no	no	0.221	0.235	0.746	9e-24

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  180 bits (457), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 111/157 (70%), Gaps = 18/157 (11%)

Query: 135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
           E+KHYRGVR+RPWG++AAEIRDPNRKG+RVWLGTFDTA+EAAKAYD AAF+LRGSKAI+N
Sbjct: 141 EKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVN 200

Query: 195 FPLEVGGTLDSKVEV----DRGKKRKYEETEGFQRNVVVKKE---EETVTVGGGGGVGVG 247
           FPLEV        E+    + G+KR   ETE     +V+KKE   EE V           
Sbjct: 201 FPLEVANFKQQDNEILQPANSGRKR-MRETEN--EEIVIKKEVKREERVPAAA------A 251

Query: 248 PLTPSNWTGFWDGE--KGIFTVPPLSPLSPYAGISPL 282
           PLTPS+W+  W+GE  KGIF VPPLSPLSP+   S L
Sbjct: 252 PLTPSSWSAIWEGEDGKGIFEVPPLSPLSPHMAYSQL 288

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.
Nicotiana tabacum (taxid: 4097)

>sp|Q9FKG1|EF104_ARATH Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1

 Score =  167 bits (423), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/284 (40%), Positives = 147/284 (51%), Gaps = 60/284 (21%)

Query: 1   MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPTTTTTATTVTT 60
           MA+  EA  ++ ISQ+LL D + +   DH             PSLF N          + 
Sbjct: 1   MATKQEALAIDFISQHLLTD-FVSMETDH-------------PSLFTN----QLHNFHSE 42

Query: 61  TTDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPD 120
           T  R   N   KP+STL QRKP  + N+++ +T S                         
Sbjct: 43  TGPRTITNQSPKPNSTLNQRKPP-LPNLSVSRTVS------------------------- 76

Query: 121 AAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYD 180
                         EE+HYRGVRRRPWG+YAAEIRDPN+KG R+WLGT+DTAVEA +AYD
Sbjct: 77  -------TKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYD 129

Query: 181 NAAFRLRGSKAILNFPLEV---GGTLDSKVEVDRGKKRKYE----ETEGFQRNVVVKKEE 233
            AAF+LRG KAILNFPL+V     T   +  +  GK+++ +    E E   R  V ++E 
Sbjct: 130 QAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKRKRDKGSPPEEEKAARVKVEEEES 189

Query: 234 ETVTVGGGGGVGVGPLTPSNWTGFWD--GEKGIFTVPPLSPLSP 275
            T          V PLTPS+W GFWD     GIF++PPLSP SP
Sbjct: 190 NTSETTEAEVEPVVPLTPSSWMGFWDVGAGDGIFSIPPLSPTSP 233

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 107/160 (66%), Gaps = 17/160 (10%)

Query: 135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
           +++HYRGVRRRPWG+YAAEIRDPN+KG RVWLGTFDTA+EAA+ YD AAF+LRGSKAILN
Sbjct: 68  DQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILN 127

Query: 195 FPLEVGGTL---DSKVEVDRGKKRKYEETEGFQRNV---VVKKEEETVTVGGGGGVGVGP 248
           FPLE G      D+K  +    KRK + TE   + +    VK+EE  V           P
Sbjct: 128 FPLEAGKHEDLGDNKKTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADA------CP 181

Query: 249 LTPSNWTGFWDG----EKGIFTVPPLSPLSPYAGISPLRV 284
           LTPS+W GFWDG    + GIF+VP LSP  P  G S L V
Sbjct: 182 LTPSSWKGFWDGADSKDMGIFSVPLLSP-CPSLGHSQLVV 220

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  164 bits (415), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/318 (37%), Positives = 157/318 (49%), Gaps = 78/318 (24%)

Query: 1   MASLNE-ASTLELISQYLLAD----QYFTSSIDHT-----------------HSFK---N 35
           MAS  E ++TL+LI Q+LL D    +++ S  + T                  SF+   N
Sbjct: 1   MASPQENSTTLDLIRQHLLDDNVFLEHYCSETETTTLIYSQSSSSSESLDQSFSFEPTLN 60

Query: 36  ISNLPQSPSL-----FNNPTTTTTATTVTTTTDRDNINSRNKPSSTLKQRKPACVKNVTI 90
            +   QS +L     FNN  T   +    T  +     S +   ++ K+RKP+   N+ I
Sbjct: 61  YATTAQSSNLEVSTFFNNSKTEFDSFEFGTIPNVSAARSSSLKQTSFKERKPSL--NIAI 118

Query: 91  PQTTSFNLMSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRY 150
           P            V  +    V +                    E+KHYRGVR+RPWG++
Sbjct: 119 P------------VKQEVVQKVELAP-----------------TEKKHYRGVRQRPWGKF 149

Query: 151 AAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG-------GTL 203
           AAEIRDPNRKG+RVWLGTFDTA+EAAKAYD AA++LRGSKAI+NFPLEV          +
Sbjct: 150 AAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVANFKQEFNNEI 209

Query: 204 DSKVEVDRGKKRKYEETEGFQRNVVVKKEEETVTVGGGGGVGVGPLTPSNWTGFWDG--E 261
              V   R + R+    E    N  +K EEE V           PLTPS+W+  WD    
Sbjct: 210 RPLVNSSRKRVRETVNEEQLVINKEMKIEEERVP--------TAPLTPSSWSAIWDSGDG 261

Query: 262 KGIFTVPPLSPLSPYAGI 279
           KGIF VPPLSP   Y+ +
Sbjct: 262 KGIFEVPPLSPFGAYSQL 279

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/252 (41%), Positives = 136/252 (53%), Gaps = 33/252 (13%)

Query: 40  PQSPSLFNNPTTTTTATTVTTTTDRDNINSRNKPSSTLKQ--RKPACVKNVTIPQTTSFN 97
           P+S    + P    +  +V+    + +  ++N+    LK   RKP     +++P  T + 
Sbjct: 76  PRSMEFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQIRKPPL--KISLPAKTEWI 133

Query: 98  LMSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDP 157
             +  N   +   PV+ +                   E+KHYRGVR+RPWG++AAEIRDP
Sbjct: 134 QFAAENTKPEVTKPVSEE-------------------EKKHYRGVRQRPWGKFAAEIRDP 174

Query: 158 NRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRG-KKRK 216
           N++GSRVWLGTFDTA+EAA+AYD AAFRLRGSKAILNFPLEVG     K   D G KKRK
Sbjct: 175 NKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKW---KPRADEGEKKRK 231

Query: 217 YEETEGFQRNVVVKKEEETVTVGGGGGVGVGPLTPSNWTGFWDGE-KGIFTVPPLSPLSP 275
            ++ E       V K E++V V GG      P   SN T   D +  G    P LSPLSP
Sbjct: 232 RDDDEKVTVVEKVLKTEQSVDVNGGETF---PFVTSNLTELCDWDLTGFLNFPLLSPLSP 288

Query: 276 YA--GISPLRVC 285
           +   G S L V 
Sbjct: 289 HPPFGYSQLTVV 300

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ91|EF103_ARATH Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 145/303 (47%), Gaps = 59/303 (19%)

Query: 1   MASLNEASTLELISQYLLADQY--------------FTSSIDHTHSFKNISNLPQ----- 41
           MA+ NE S L LI +YLL +                FTS       F      P+     
Sbjct: 1   MATPNEVSALFLIKKYLLDELSPLPTTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLV 60

Query: 42  --SPSLFNNPTTTTTATTVTTTTDRDNINSRNKPSSTLKQ-RKPACVKNVTIPQTTSFNL 98
              P +F+        + + + ++       N P  T++  RKP     +  P  T +  
Sbjct: 61  TPKPEIFD----FDVKSEIPSESNDSFTFQSNPPRVTVQSNRKPPL--KIAPPNRTKWIQ 114

Query: 99  MSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPN 158
            +  N   +   PV         AA+          E++HYRGVR RPWG++AAEIRDP 
Sbjct: 115 FATGNPKPELPVPV--------VAAE----------EKRHYRGVRMRPWGKFAAEIRDPT 156

Query: 159 RKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRG---KKR 215
           R+G+RVWLGTF+TA+EAA+AYD  AFRLRGSKAILNFPLEV    + + E  RG   K++
Sbjct: 157 RRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEV-DKWNPRAEDGRGLYNKRK 215

Query: 216 KYEETEGFQRNVVVKKEEETVTVGGGGGVGVGPLTPSNW--TGFWDGEKGIFTVPPLSPL 273
           +  E E       V K EE+  V GG  V  G     +W  T F        ++P LSPL
Sbjct: 216 RDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAIDDWDLTEF-------LSMPLLSPL 268

Query: 274 SPY 276
           SP+
Sbjct: 269 SPH 271

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY05|EF106_ARATH Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 72/96 (75%), Gaps = 4/96 (4%)

Query: 131 NNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSK 190
              ++ +HYRGVRRRPWG++AAEIRDP +KGSR+WLGTF++ V+AA+AYD AAF+LRG K
Sbjct: 102 EEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRK 161

Query: 191 AILNFPLEVGGTLDSKVEVDRGKKRKYEET-EGFQR 225
           A+LNFPL+ G     +   + G+KRK  +  E  QR
Sbjct: 162 AVLNFPLDAGKY---EAPANSGRKRKRSDVHEELQR 194

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 62/75 (82%), Gaps = 3/75 (4%)

Query: 137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
           K YRGVRRRPWG+YAAEIRD  R G+RVWLGTF+TA EAA AYD AAFR+RG+KA+LNFP
Sbjct: 57  KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116

Query: 197 LEVGGTLDSKVEVDR 211
            E+   +++ V VD+
Sbjct: 117 SEI---VNASVSVDK 128

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 59/66 (89%)

Query: 134 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAIL 193
           ++ KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+L
Sbjct: 112 VKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALL 171

Query: 194 NFPLEV 199
           NFPL V
Sbjct: 172 NFPLRV 177

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 57/63 (90%)

Query: 137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
           KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+LNFP
Sbjct: 146 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205

Query: 197 LEV 199
           L V
Sbjct: 206 LRV 208

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
224112801	288	AP2/ERF domain-containing transcription	0.835	0.826	0.427	3e-48
356575124	266	PREDICTED: ethylene-responsive transcrip	0.807	0.864	0.475	1e-45
255637560	266	unknown [Glycine max]	0.807	0.864	0.478	3e-45
224057956	287	AP2/ERF domain-containing transcription	0.838	0.832	0.437	5e-44
388498884	254	unknown [Lotus japonicus]	0.694	0.779	0.504	5e-44
57012758	291	RecName: Full=Ethylene-responsive transc	0.487	0.477	0.598	5e-43
350536631	244	ethylene response factor 5 [Solanum lyco	0.810	0.946	0.448	8e-43
225455050	242	PREDICTED: ethylene-responsive transcrip	0.550	0.648	0.531	9e-43
306476397	219	ethylene response factor 56 [Brassica na	0.743	0.968	0.417	3e-42
297797121	244	hypothetical protein ARALYDRAFT_496327 [	0.785	0.918	0.408	3e-42

>gi|224112801|ref|XP_002332694.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222832948|gb|EEE71425.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 158/297 (53%), Gaps = 59/297 (19%)

Query: 1   MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPTTTTTATTVTT 60
           MAS +EAS LELI ++LL D    +S+D      N+ +L  + S     +  TT    T 
Sbjct: 1   MASFDEASALELIREHLLTD---FASMDSL--ITNLDDLCSTSS-----SCITTDYIKTE 50

Query: 61  TTDRDNINSRNKPS--------------------STLKQRKPACVKNVTIPQTTSFNLMS 100
           +T+ D  N    P                     STL QRKP+ +KN+ IP   + N+  
Sbjct: 51  STEFDPFNQSEHPQPKLQSQSSIESKPQSSPKSPSTLSQRKPSMIKNIAIPPPATLNM-- 108

Query: 101 CSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRK 160
                     PV +K       AD ++       +E+HYRGVRRRPWG+YAAEIRDPN+K
Sbjct: 109 ----TPQVVQPVVIK-------ADVSSE------QERHYRGVRRRPWGKYAAEIRDPNKK 151

Query: 161 GSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEV---DRGKKRKY 217
           G+RVWLGTFDTA+EAAKAYD+AAFRLRGSKAILNFPLE G +   + E       KKRK 
Sbjct: 152 GARVWLGTFDTAIEAAKAYDSAAFRLRGSKAILNFPLEAGKSNSQQPEQFLETSSKKRKI 211

Query: 218 EETEGFQRNV------VVKKEEETVTVGGGGGVGVGPLTPSNWTGFWDGE-KGIFTV 267
           EE E    +        V K E +            PLTPS+W GFWDGE  GIF V
Sbjct: 212 EEIESSMESTGSVITNKVAKRESSSPETEVKAAATEPLTPSSWKGFWDGEVMGIFNV 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575124|ref|XP_003555692.1| PREDICTED: ethylene-responsive transcription factor 5-like [Glycine max]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 151/261 (57%), Gaps = 31/261 (11%)

Query: 39  LPQS-PSLFNNPTTTTTATTVT-TTTDRDNINSRNKP---SSTLKQRKPACVKNVTIPQT 93
           LPQ  PS F  P  +     +  T      I S +KP   SS L  RKP+ ++N+TIP  
Sbjct: 17  LPQEVPSQFQFPDMSNNNIPMNHTNLQMPQITSFSKPPRSSSNLSNRKPS-LRNITIPSI 75

Query: 94  TSFNLMSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAE 153
           TS    + S           + N +   ++ D  NN   N   KHYRGVRRRPWG+YAAE
Sbjct: 76  TSGLTTTMSQTTTTTTIATTMYNNNQVTSSSDETNNIKEN---KHYRGVRRRPWGKYAAE 132

Query: 154 IRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDS-----KVE 208
           IRDPNRKGSRVWLGTFDTA+EAAKAYD AAF++RGSKAILNFPLE+G + +S     KV 
Sbjct: 133 IRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEIGESEESVSSCIKVG 192

Query: 209 VDRGKKRK-----YEETEGFQRNVV---VKKEEETVTVGGGGGVGVGPLTPSNWTGFWDG 260
           V R ++ +     YE++E    N     VKKEE            V PLTPS W GFWD 
Sbjct: 193 VKREREEESKSNNYEKSEFNNNNNSNKHVKKEE-------CSPKAVCPLTPSCWKGFWDT 245

Query: 261 E--KGIFTVPPLSPLSPYAGI 279
           +    IF+VPPLSPLSP   +
Sbjct: 246 DVMGTIFSVPPLSPLSPLMVV 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637560|gb|ACU19106.1| unknown [Glycine max]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/261 (47%), Positives = 148/261 (56%), Gaps = 31/261 (11%)

Query: 39  LPQS-PSLFNNPTTTTTATTVT-TTTDRDNINSRNKP---SSTLKQRKPACVKNVTIPQT 93
           LPQ  PS F  P  +     +  T      I S +KP   SS L  RKP+ ++N+TIP  
Sbjct: 17  LPQEVPSQFQFPDMSNNNIPMNHTNLQMPQITSFSKPPRSSSNLSNRKPS-LRNITIPSI 75

Query: 94  TSFNLMSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAE 153
           TS    + S           + N +   ++ D  NN   N   KHYRGVRRRPWG+YAAE
Sbjct: 76  TSGLTTTMSQTTTTTTIATTMYNNNQVTSSSDETNNIKEN---KHYRGVRRRPWGKYAAE 132

Query: 154 IRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDS-----KVE 208
           IRDPNRKGSRVWLGTFDTA+EAAKAYD AAF++RGSKAILNFPLE+G + +S     KV 
Sbjct: 133 IRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEIGESEESVSSCIKVG 192

Query: 209 VDR-----GKKRKYEETEGFQRNVV---VKKEEETVTVGGGGGVGVGPLTPSNWTGFW-- 258
           V R      K   YE++E    N     VKKEE            V PLTPS W GFW  
Sbjct: 193 VKREREEESKSNNYEKSEFNNNNNSNKHVKKEE-------CSPKAVCPLTPSCWKGFWGT 245

Query: 259 DGEKGIFTVPPLSPLSPYAGI 279
           D    IF+VPPLSPLSP   +
Sbjct: 246 DVMGTIFSVPPLSPLSPLMVV 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057956|ref|XP_002299408.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222846666|gb|EEE84213.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/295 (43%), Positives = 163/295 (55%), Gaps = 56/295 (18%)

Query: 1   MASL-NEASTLELISQYLLADQYFTSSIDHTHSFKNISNL----PQSPSLFNNPTTTTTA 55
           MAS  +EASTLELI Q+LL D    +S+D   SF  ISNL      S +   +     + 
Sbjct: 1   MASFDHEASTLELIRQHLLTD---FASMD---SF--ISNLDDLCSTSTTSTTDDYYIKSE 52

Query: 56  TTVTTTTDRDNINSRNKPSSTLK-------------QRKPACVKNVTIPQTTSFNLMSCS 102
           +T     D+     + + S   K             QRKP+ +K++ IP           
Sbjct: 53  STEFDPFDQPQFKLQTQSSIESKPQYSSPKSSTSLSQRKPSMIKDIAIP----------- 101

Query: 103 NVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGS 162
                   P A  N +P  A    N  + ++ +++HYRGVRRRPWG+YAAEIRDPN+KG+
Sbjct: 102 --------PPATLNMNPQVAQPVVNKTDLSSEQDRHYRGVRRRPWGKYAAEIRDPNKKGA 153

Query: 163 RVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEV---DRGKKRKYE- 218
           RVWLGTFDTA+EAAKAYD+AAFRLRGSKAILNFPLE G +   + E       KKRK+E 
Sbjct: 154 RVWLGTFDTAIEAAKAYDSAAFRLRGSKAILNFPLEAGKSNSQQPEQFLETSCKKRKFEG 213

Query: 219 ---ETEGFQR--NVVVKKEEETVTVGGGGGVGVGPLTPSNWTGFWDGE-KGIFTV 267
                EG     N VVK+E  +        V  GPLTPS+W GFWDGE  GIF+V
Sbjct: 214 IKSSVEGTNSITNKVVKRETSSPE-SEVKAVASGPLTPSSWKGFWDGETMGIFSV 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498884|gb|AFK37508.1| unknown [Lotus japonicus]

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/216 (50%), Positives = 139/216 (64%), Gaps = 18/216 (8%)

Query: 74  SSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPDAAADDNNNNNNNN 133
           S  L  RKP+   N++IP   S N    SN++   +   + ++    +++D      +NN
Sbjct: 47  SPNLSNRKPSL--NISIP---SINSGLKSNISQSKETSFSHQSSSSSSSSDHQTQEEDNN 101

Query: 134 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAIL 193
              KHYRGVRRRPWG++AAEIRDPNRKGSRVWLGTFDTA+EAAKAYD AAF++RGS+AIL
Sbjct: 102 ---KHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSRAIL 158

Query: 194 NFPLEVGGTLDSKVE--VDRGKKRKYEETEGFQRNVVVKKEE---ETVTVGGGGGVG--- 245
           NFPLEVG   + +    V+ G+KR  EE +  + +V VKK+    E      G  V    
Sbjct: 159 NFPLEVGNCHEEEESSVVNVGEKRIREEDKCVEESVTVKKQVKKGECSDPNNGVSVSAAT 218

Query: 246 VGPLTPSNWTGFWDGE-KG-IFTVPPLSPLSPYAGI 279
           V PLTPS W GFWD + KG IF+VPPLSPLSP   +
Sbjct: 219 VCPLTPSLWKGFWDTDVKGTIFSVPPLSPLSPLMVV 254

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57012758|sp|Q40478.1|ERF5_TOBAC RecName: Full=Ethylene-responsive transcription factor 5; AltName: Full=Ethylene-responsive element-binding factor 4; Short=EREBP-4; AltName: Full=Ethylene-responsive element-binding factor 5 homolog; AltName: Full=NtERF4 gi|1208497|dbj|BAA07323.1| ethylene-responsive element binding protein [Nicotiana tabacum]

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 111/157 (70%), Gaps = 18/157 (11%)

Query: 135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
           E+KHYRGVR+RPWG++AAEIRDPNRKG+RVWLGTFDTA+EAAKAYD AAF+LRGSKAI+N
Sbjct: 141 EKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVN 200

Query: 195 FPLEVGGTLDSKVEV----DRGKKRKYEETEGFQRNVVVKKE---EETVTVGGGGGVGVG 247
           FPLEV        E+    + G+KR   ETE     +V+KKE   EE V           
Sbjct: 201 FPLEVANFKQQDNEILQPANSGRKR-MRETEN--EEIVIKKEVKREERVPAAA------A 251

Query: 248 PLTPSNWTGFWDGE--KGIFTVPPLSPLSPYAGISPL 282
           PLTPS+W+  W+GE  KGIF VPPLSPLSP+   S L
Sbjct: 252 PLTPSSWSAIWEGEDGKGIFEVPPLSPLSPHMAYSQL 288

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536631|ref|NP_001234512.1| ethylene response factor 5 [Solanum lycopersicum] gi|45642990|gb|AAS72389.1| ethylene response factor 5 [Solanum lycopersicum]

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 131/292 (44%), Positives = 154/292 (52%), Gaps = 61/292 (20%)

Query: 1   MASLNEAST-LELISQYLLADQYFTSSIDHT-HSFK--NISNLPQSPSLFNNPTTTTTAT 56
           M S  E  T L+LI Q+L     F  S+D T  SF+    SNL    S FN  + T    
Sbjct: 1   MGSPQETCTSLDLIRQHL-----FDESLDQTCFSFETTQTSNLDDIASFFNATSKTEYDG 55

Query: 57  TVTTTTDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKN 116
                  R  I+S +   S L++RKP+   NV IP                         
Sbjct: 56  FFEFEAKRHVIHSNSPKQSNLRERKPSL--NVAIP------------------------- 88

Query: 117 KDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAA 176
                 A       N  IE+KHYRGVR+RPWG++AAEIRDPNRKG+RVWLGTFDTAV+AA
Sbjct: 89  ------AKPVVVVENVEIEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAVDAA 142

Query: 177 KAYDNAAFRLRGSKAILNFPLEVGGTL----DSKVEV-DRGKKRKYEETEGFQRNVVVKK 231
           KAYD AAF+LRGSKAILNFPLEV        ++K E    G KR   ETE     +V+KK
Sbjct: 143 KAYDRAAFKLRGSKAILNFPLEVANFKQQNDETKTETKSSGSKRVRGETE----ELVIKK 198

Query: 232 ----EEETVTVGGGGGVGVGPLTPSNWTGFWDGEKGIFTVPPLSPLSPYAGI 279
               EEE V           PLTPS+W+  WD EKGIF VPPLSPLS    I
Sbjct: 199 ERKIEEERVL-----PTAAAPLTPSSWSTIWD-EKGIFEVPPLSPLSQLVMI 244

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455050|ref|XP_002282181.1| PREDICTED: ethylene-responsive transcription factor 5 [Vitis vinifera] gi|297745019|emb|CBI38611.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 115/177 (64%), Gaps = 20/177 (11%)

Query: 112 VAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDT 171
           +A+ +  P   A D+ +       E+HYRGVRRRPWG++AAEIRDPNR+GSRVWLGTFDT
Sbjct: 71  IAIPHPSPPPTAADSGH-------ERHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFDT 123

Query: 172 AVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRGKKRKYEETEGFQRNV---- 227
           AVEAA+AYD AAFR+RGSKAILNFPLE G   ++  + +   +++  ETE   R      
Sbjct: 124 AVEAARAYDRAAFRMRGSKAILNFPLEAGAPPEAS-QRNPSVRKRLRETEKNDRETVEVK 182

Query: 228 VVKKEE------ETVTVGGGGGVGVGPLTPSNWTGFWDGEK--GIFTVPPLSPLSPY 276
           V+KKEE        VT+         PLTPS+WT  WDG    GIF VPPLSPLSP 
Sbjct: 183 VIKKEEIVESPVSDVTLANTSTAVACPLTPSSWTAVWDGADGNGIFNVPPLSPLSPL 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|306476397|gb|ADM89080.1| ethylene response factor 56 [Brassica napus]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/278 (41%), Positives = 148/278 (53%), Gaps = 66/278 (23%)

Query: 1   MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPTTTTTATTVTT 60
           MA+  EA  +E ISQ+LLAD  F S   H HS                            
Sbjct: 1   MATKQEALAIEFISQHLLAD--FASQDHHLHS---------------------------E 31

Query: 61  TTDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPD 120
           TT R   N   KP+STL +RKP  + N+++P +++                     K P+
Sbjct: 32  TTPRTIGNHNPKPNSTLNRRKPP-LPNLSVPVSSTM--------------------KKPE 70

Query: 121 AAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYD 180
                         E++HYRGVRRRPWG+YAAEIRDPN+KGSR+WLGT+DTAVEAA+AYD
Sbjct: 71  EE------------EKRHYRGVRRRPWGKYAAEIRDPNKKGSRLWLGTYDTAVEAARAYD 118

Query: 181 NAAFRLRGSKAILNFPLEVGGTLDSKVEVDRGKKRKYEETEGFQRNVVVK-KEEETVTVG 239
            AAF LRG KAILNFPL+V  T +S   V  GK+++ +     +  V V+ K E   +  
Sbjct: 119 LAAFELRGRKAILNFPLDVRATSESCF-VGLGKRKRLKSFVAEEETVPVRVKAEAKESYT 177

Query: 240 GGGGVGVGPLTPSNWTGFWD--GEKGIFTVPPLSPLSP 275
               V   PLTPS+W G WD     GIF+VPPL+P SP
Sbjct: 178 TVAEVEAVPLTPSSWKGVWDVGAGDGIFSVPPLTPTSP 215

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797121|ref|XP_002866445.1| hypothetical protein ARALYDRAFT_496327 [Arabidopsis lyrata subsp. lyrata] gi|297312280|gb|EFH42704.1| hypothetical protein ARALYDRAFT_496327 [Arabidopsis lyrata subsp. lyrata]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/284 (40%), Positives = 152/284 (53%), Gaps = 60/284 (21%)

Query: 1   MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPTTTTTATTVTT 60
           MA+  EA  +E ISQ+LL D                +++   PSLF N          + 
Sbjct: 4   MATKQEALAIEFISQHLLTD---------------FASMETDPSLFTN----QVHNFHSE 44

Query: 61  TTDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPD 120
           T+ R   N   KP+STL QRKP  + N+ +P+  S                         
Sbjct: 45  TSPRTISNQSPKPNSTLNQRKPP-LPNLPVPRMVS------------------------- 78

Query: 121 AAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYD 180
                         EE+HYRGVRRRPWG+YAAEIRDPN+KGSR+WLGT+DTAVEAA+AYD
Sbjct: 79  ------TKTEKEEEEERHYRGVRRRPWGKYAAEIRDPNKKGSRIWLGTYDTAVEAARAYD 132

Query: 181 NAAFRLRGSKAILNFPLEVGGTLDSKVE---VDRGKKRKYE----ETEGFQRNVVVKKEE 233
            AAF+LRG KAILNFPL++  T ++  E   V  G++++ +    E E  +  V V++EE
Sbjct: 133 QAAFQLRGRKAILNFPLDIRATSETCFEEGAVGLGQRKRVKSSPPEEEKEKVRVKVEEEE 192

Query: 234 ETVTVGGGGGVGVGPLTPSNWTGFWD--GEKGIFTVPPLSPLSP 275
              +      V   PLTPS+W GFWD     GIF++PPLSP SP
Sbjct: 193 SNTSETTEAEVEAVPLTPSSWMGFWDVGAGDGIFSIPPLSPTSP 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.494	0.585	0.526	2.3e-46
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.512	0.660	0.547	6.2e-43
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.505	0.48	0.532	1.9e-38
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.480	0.485	0.486	2e-30
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.280	0.398	0.629	5.9e-25
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.291	0.273	0.607	1.2e-24
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.291	0.309	0.583	1.8e-23
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.231	0.271	0.712	3.8e-23
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.228	0.266	0.738	5.5e-22
TAIR|locus:2086213	139	TDR1 "Transcriptional Regulato	0.245	0.503	0.657	1.9e-21

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
 Identities = 79/150 (52%), Positives = 96/150 (64%)

Query:   135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
             EE+HYRGVRRRPWG+YAAEIRDPN+KG R+WLGT+DTAVEA +AYD AAF+LRG KAILN
Sbjct:    84 EERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILN 143

Query:   195 FPLEV---GGTLDSKVEVDRGKKRKYE----ETEGFQRNXXXXXXXXXXXXXXXXXXXXX 247
             FPL+V     T   +  +  GK+++ +    E E   R                      
Sbjct:   144 FPLDVRVTSETCSGEGVIGLGKRKRDKGSPPEEEKAARVKVEEEESNTSETTEAEVEPVV 203

Query:   248 PLTPSNWTGFWD--GEKGIFTVPPLSPLSP 275
             PLTPS+W GFWD     GIF++PPLSP SP
Sbjct:   204 PLTPSSWMGFWDVGAGDGIFSIPPLSPTSP 233

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 6.2e-43, Sum P(3) = 6.2e-43
 Identities = 86/157 (54%), Positives = 100/157 (63%)

Query:   135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
             +++HYRGVRRRPWG+YAAEIRDPN+KG RVWLGTFDTA+EAA+ YD AAF+LRGSKAILN
Sbjct:    68 DQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILN 127

Query:   195 FPLEVGG--TL-DSKVEVDRGKKRKYEETEGFQRNXXXXXXXXXXXXXXXXXXXXXPLTP 251
             FPLE G    L D+K  +    KRK + TE                          PLTP
Sbjct:   128 FPLEAGKHEDLGDNKKTISLKAKRKRQVTED---ESQLISRKAVKREEAQVQADACPLTP 184

Query:   252 SNWTGFWDG----EKGIFTVPPLSPLSPYAGISPLRV 284
             S+W GFWDG    + GIF+VP LSP  P  G S L V
Sbjct:   185 SSWKGFWDGADSKDMGIFSVPLLSPC-PSLGHSQLVV 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
 Identities = 82/154 (53%), Positives = 95/154 (61%)

Query:   135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
             E+KHYRGVR+RPWG++AAEIRDPN++GSRVWLGTFDTA+EAA+AYD AAFRLRGSKAILN
Sbjct:   152 EKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILN 211

Query:   195 FPLEVGGTLDSKVEVDRG-KKRKYEETEGFQRNXXXXXXXXXXXXXXXXXXXXXPLTPSN 253
             FPLEVG     K   D G KKRK ++ E   +                      P   SN
Sbjct:   212 FPLEVGKW---KPRADEGEKKRKRDDDE---KVTVVEKVLKTEQSVDVNGGETFPFVTSN 265

Query:   254 WTGFWDGE-KGIFTVPPLSPLSPYA--GISPLRV 284
              T   D +  G    P LSPLSP+   G S L V
Sbjct:   266 LTELCDWDLTGFLNFPLLSPLSPHPPFGYSQLTV 299

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 70/144 (48%), Positives = 87/144 (60%)

Query:   135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
             E++HYRGVR RPWG++AAEIRDP R+G+RVWLGTF+TA+EAA+AYD  AFRLRGSKAILN
Sbjct:   133 EKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILN 192

Query:   195 FPLEVGGTLDSKVEVDRG--KKRKYEETEGFQRNXXXXXXXXXXXXXXXXXXXXXPLTPS 252
             FPLEV    + + E  RG   KRK +  E                           LT  
Sbjct:   193 FPLEVD-KWNPRAEDGRGLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAI 251

Query:   253 NWTGFWDGEKGIFTVPPLSPLSPY 276
             +    WD  +   ++P LSPLSP+
Sbjct:   252 D---DWDLTE-FLSMPLLSPLSPH 271

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 51/81 (62%), Positives = 67/81 (82%)

Query:   135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
             E +HYRGVRRRPWG++AAEIRDP +KGSR+WLGTF++ ++AA+AYD AAF+LRG KA+LN
Sbjct:   103 ETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLN 162

Query:   195 FPLEVGGTLDSKVEVDRGKKR 215
             FPL+ G   D+ V   R ++R
Sbjct:   163 FPLDAG-KYDAPVNSCRKRRR 182

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 51/84 (60%), Positives = 65/84 (77%)

Query:   137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
             KHYRGVR+RPWG++AAEIRDP + G+RVWLGTFD+A EAA AYD AA+R+RGS+A+LNFP
Sbjct:   147 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFP 206

Query:   197 LEVGGTLDSKVEVDR-GKKRKYEE 219
             L +G  + +       G KR Y +
Sbjct:   207 LRIGSEIAAAAAAAAAGNKRPYPD 230

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query:   137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
             KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+LNFP
Sbjct:   146 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205

Query:   197 LEVGGTLDSKVEVDRGKKRKYEET 220
             L V       V + + K+  +  +
Sbjct:   206 LRVNSGEPDPVRI-KSKRSSFSSS 228

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 47/66 (71%), Positives = 59/66 (89%)

Query:   134 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAIL 193
             ++ KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+L
Sbjct:   112 VKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALL 171

Query:   194 NFPLEV 199
             NFPL V
Sbjct:   172 NFPLRV 177

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 48/65 (73%), Positives = 54/65 (83%)

Query:   135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
             EEK YRGVR+RPWG++AAEIRD  RKG RVWLGTFDTA  AA AYD AAF L+GS A+LN
Sbjct:    78 EEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLN 137

Query:   195 FPLEV 199
             FP +V
Sbjct:   138 FPADV 142

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2086213 TDR1 "Transcriptional Regulator of Defense Response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 46/70 (65%), Positives = 57/70 (81%)

Query:   135 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 194
             ++  +RGVRRRPWG++AAEIRDP+R G+R+WLGTF+TA EAA+AYD AAF LRG  AILN
Sbjct:    16 KQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILN 75

Query:   195 FPLEVGGTLD 204
             FP E    +D
Sbjct:    76 FPNEYYPRMD 85

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	9e-31
pfam00847	53	pfam00847, AP2, AP2 domain	6e-16

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  115 bits (291), Expect = 3e-33
 Identities = 43/59 (72%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 138 HYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
            YRGVR+RPWG++ AEIRDP  KG RVWLGTFDTA EAA+AYD AAF+ RG  A LNFP
Sbjct: 1   KYRGVRQRPWGKWVAEIRDP-SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  109 bits (274), Expect = 9e-31
 Identities = 42/60 (70%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
             YRGVR+RPWG++ AEIRDP+  G R+WLGTFDTA EAA+AYD AA +LRGS A+LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 70.0 bits (172), Expect = 6e-16
 Identities = 28/54 (51%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 137 KHYRGVRRRP-WGRYAAEIRDP-NRKGSRVWLGTFDTAVEAAKAYDNAAFRLRG 188
             Y+GVR    WGR+ AEIRDP  +K  R  LGTF T  EAA+A   A  +LRG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.82
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.79
PHA00280	121	putative NHN endonuclease	99.68
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.23

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.82  E-value=2.5e-20  Score=136.49  Aligned_cols=61  Identities=69%  Similarity=1.255  Sum_probs=56.8

Q ss_pred             ceeeeeEEcCCCcEEEEEecCCCCCcEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 023209          137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLE  198 (285)
Q Consensus       137 S~yRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~~  198 (285)
                      |+|+||+++++|||+|+|+++. .|+++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999943 289999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.79  E-value=2.7e-19  Score=132.68  Aligned_cols=63  Identities=68%  Similarity=1.208  Sum_probs=58.5

Q ss_pred             eeeeeEEcCCCcEEEEEecCCCCCcEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 023209          138 HYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGG  201 (285)
Q Consensus       138 ~yRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~~~~~  201 (285)
                      +|+||+++++|||+|+|+++. +|+++|||+|+|+||||+|||.|+++++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999998999999999976 479999999999999999999999999999999999997653

>PHA00280 putative NHN endonuclease

Probab=99.68  E-value=5.7e-17  Score=135.62  Aligned_cols=87  Identities=14%  Similarity=0.072  Sum_probs=79.7

Q ss_pred             CCCCCCCCCCccccCCCcchhhhhcccCCCCCCCCceeeeeEEcCC-CcEEEEEecCCCCCcEEecCCCCcHHHHHHHHH
Q 023209          102 SNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPW-GRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYD  180 (285)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~a~n~~N~~~~~~~~S~yRGV~~r~~-GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD  180 (285)
                      +++.+++...+...+.+...+++|++|.+..+.|+|||+||+|++. |||+|+|++   +||+++||.|+++|+|+.||+
T Consensus        32 VdHidg~~~dnri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~  108 (121)
T PHA00280         32 IDHIDGNPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR  108 (121)
T ss_pred             EEcCCCCCCCCcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH
Confidence            6777888888888888999999999999999999999999998766 999999999   899999999999999999997


Q ss_pred             HHHHHhcCCCCC
Q 023209          181 NAAFRLRGSKAI  192 (285)
Q Consensus       181 ~AA~kl~G~~A~  192 (285)
                       ++.+|||++|.
T Consensus       109 -~~~~lhGeFa~  119 (121)
T PHA00280        109 -TRRELHGQFAR  119 (121)
T ss_pred             -HHHHHhhcccc
Confidence             77789999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.23  E-value=1.9e-11  Score=87.44  Aligned_cols=53  Identities=34%  Similarity=0.455  Sum_probs=46.4

Q ss_pred             ceeeeeEEcCC-CcEEEEEecCCCCC--cEEecCCCCcHHHHHHHHHHHHHHhcCC
Q 023209          137 KHYRGVRRRPW-GRYAAEIRDPNRKG--SRVWLGTFDTAVEAAKAYDNAAFRLRGS  189 (285)
Q Consensus       137 S~yRGV~~r~~-GKW~A~I~~~~~~G--kri~LGtFdT~EEAArAYD~AA~kl~G~  189 (285)
                      |+|+||++++. ++|+|+|++...+|  ++++||.|++++||++||+.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999998875 99999999853343  9999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		8e-24
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-23

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score =  107 bits (267), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 57/63 (90%)
Query: 137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
           KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 197 LEV 199
           L V
Sbjct: 61  LRV 63

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 57/63 (90%)
Query: 137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
           KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 197 LEV 199
           L V
Sbjct: 64  LRV 66
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
1gcc_A	63	Ethylene responsive element binding factor 1; tran	6e-44

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  142 bits (361), Expect = 6e-44
 Identities = 47/63 (74%), Positives = 57/63 (90%)

Query: 137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
           KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 197 LEV 199
           L V
Sbjct: 61  LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	94.11
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.05

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=7.6e-25  Score=162.52  Aligned_cols=62  Identities=74%  Similarity=1.372  Sum_probs=59.3

Q ss_pred             eeeeeEEcCCCcEEEEEecCCCCCcEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 023209          138 HYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV  199 (285)
Q Consensus       138 ~yRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~~~  199 (285)
                      +||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.++.+|||.++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            79999999999999999998877899999999999999999999999999999999999864

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=94.11  E-value=0.00078  Score=57.19  Aligned_cols=75  Identities=7%  Similarity=-0.095  Sum_probs=55.7

Q ss_pred             cCCCCCCCCCCccccCCCcchhhhhcccCCCCCCCCceeeeeEEcCCCcEEEEEecCCCCCcEEecCCCCcHHHHHHHHH
Q 023209          101 CSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYD  180 (285)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~a~n~~N~~~~~~~~S~yRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD  180 (285)
                      ...+.+++.......+.+-..+.+|+++........ .++||.+...++|.+.|..   + +.++||.|+|.+|||++|.
T Consensus        72 ~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           72 VVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             EEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             EEEcCCCCCCCCCHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            467777778888888888888888887765443332 2467765333779999988   4 5678999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.05  E-value=0.053  Score=41.58  Aligned_cols=28  Identities=25%  Similarity=0.180  Sum_probs=23.1

Q ss_pred             CCCceeeeeEEcCC-CcEEEEEecCCCCCcEE
Q 023209          134 IEEKHYRGVRRRPW-GRYAAEIRDPNRKGSRV  164 (285)
Q Consensus       134 ~~~S~yRGV~~r~~-GKW~A~I~~~~~~Gkri  164 (285)
                      ..+|+|+||+|.+. +.|.|.-.+   +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence            56799999999887 999999998   56654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	9e-38

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  125 bits (316), Expect = 9e-38
 Identities = 47/63 (74%), Positives = 57/63 (90%)

Query: 137 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 196
           KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 197 LEV 199
           L V
Sbjct: 61  LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.4e-25  Score=165.27  Aligned_cols=62  Identities=74%  Similarity=1.372  Sum_probs=59.2

Q ss_pred             eeeeeEEcCCCcEEEEEecCCCCCcEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 023209          138 HYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV  199 (285)
Q Consensus       138 ~yRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~~~  199 (285)
                      +||||+++++|||.|+|+++..+|+++|||+|+|+||||+|||+||++++|.++.+|||+++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            69999999999999999998888999999999999999999999999999999999999864