Citrus Sinensis ID: 023240

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFCI
Secondary Structure (PSIPRED)
cccccHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccEEEcccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEEccccHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHccccccccEEEEEHHHHHHHHHcccccccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccEHHHEccccccccccccccccccccccccccEEEccHHHcccHHHHHHHHHHHcccHEHHccccccccHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHcccEEEEEEcHHHHHHHHHcccccccEEEEEccEHEEcHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQmyglssngeragrqnqnrhriaMTTSTLLvfqnpllpkptrpahssiagvQKGAASACIVCARSQDDDYHATIKALnskgrfprkslgqhymlNSEINDQLAAAAAVQEGDivleigpgtgsLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVvanipfnisTDVIkqllpmgdIFSEVVLLLQEETALRlvepslrtseyrpinIFVNFYSGQFCI
Flexible Loop (DISEMBL)
mgelvaevgckslterqVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKalnskgrfprKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLvepslrtseyrpinifVNFYSGQFCI
Low Complexity Region (SEG)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFCI
Disordered region (IsUnstruct)
****VAEVGCKSLTERQVVSVIYRILGTYCSQMYGL****************IAMTTSTLLVFQNPLL**********IAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFC*
Disordered Region (DISOPRED)
**ELVAEVGCKSLTERQVVSVIYRILGTYCSQMY********************MTTSTLLVFQNPL***************************************ALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFCI
Disordered Region (DISEMBL)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPT***************SACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFCI
Disordered Region (DISPRO)
*GELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGL*************RHRIAMTTSTLLVFQNPLLPKPT*****S*********SACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFCI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q6ME80	284	Ribosomal RNA small subun	yes	no	0.575	0.577	0.367	4e-22
B8D0I2	301	Ribosomal RNA small subun	yes	no	0.554	0.524	0.343	1e-19
Q8DND3	290	Ribosomal RNA small subun	yes	no	0.610	0.6	0.320	3e-19
Q04II4	290	Ribosomal RNA small subun	yes	no	0.610	0.6	0.320	3e-19
C1CMT3	290	Ribosomal RNA small subun	yes	no	0.610	0.6	0.320	3e-19
Q5N2S8	279	Ribosomal RNA small subun	yes	no	0.491	0.501	0.362	5e-19
Q31RH6	279	Ribosomal RNA small subun	yes	no	0.491	0.501	0.362	5e-19
Q2RME8	288	Ribosomal RNA small subun	yes	no	0.614	0.607	0.320	5e-19
Q8TWU7	278	Probable ribosomal RNA sm	yes	no	0.547	0.561	0.354	6e-19
B1XIV9	273	Ribosomal RNA small subun	yes	no	0.498	0.520	0.357	9e-19

>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 13/177 (7%)

Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           LN  G FP+K L Q+++++  I  ++  A+ VQ G++VLEIGPG GSLT  +L   A V+
Sbjct: 13  LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72

Query: 168 AIEKDQHMVGLVRE--RFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
           A+EKD     L RE  RF +   QL++  ED +   +   + S    R      AKV+AN
Sbjct: 73  AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125

Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
           +P++++T ++ +++    +FS + +++QEE A R+   P    S+Y    IF+NFYS
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYS 180

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
Protochlamydia amoebophila (strain UWE25) (taxid: 264201)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 8EC: 2

>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 5/163 (3%)

Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           K LGQ+++++  I D++   A +   DIV+EIGPG GSLT  ++     V A EKD+ +V
Sbjct: 24  KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83

Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
            ++RE F   + L+V+ +D ++   +      F+ R  S    KV+AN+P+ I+T VI  
Sbjct: 84  KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139

Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           LL     FS +VL++Q+E A R+   +  + +Y  +++ V +Y
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYY 181

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q8DND3|RSMA_STRR6 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)

Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
           DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L
Sbjct: 5   DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64

Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
               A V+A E D  +V ++ +     D + V+ ED +K  +  H+ +     K+ +   
Sbjct: 65  AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
           KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R+  +P+  T  Y  ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178

Query: 279 Y 279
           Y
Sbjct: 179 Y 179

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q04II4|RSMA_STRP2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)

Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
           DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L
Sbjct: 5   DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64

Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
               A V+A E D  +V ++ +     D + V+ ED +K  +  H+ +     K+ +   
Sbjct: 65  AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
           KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R+  +P+  T  Y  ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178

Query: 279 Y 279
           Y
Sbjct: 179 Y 179

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (taxid: 373153)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|C1CMT3|RSMA_STRZP Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain P1031) GN=rsmA PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)

Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
           DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L
Sbjct: 5   DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64

Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
               A V+A E D  +V ++ +     D + V+ ED +K  +  H+    +  K+     
Sbjct: 65  AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
           KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R+  +P+  T  Y  ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178

Query: 279 Y 279
           Y
Sbjct: 179 Y 179

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Streptococcus pneumoniae (strain P1031) (taxid: 488223)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q5N2S8|RSMA_SYNP6 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rsmA PE=3 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 9/149 (6%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           RK  GQH++ +  I D++ AAA ++  D VLEIGPG G+LT  LL A   ++A+E D+ +
Sbjct: 4   RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRDL 63

Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           +G +++RF   +   +L+ D ++    + +      R   +  +KVVANIP+NI+  +++
Sbjct: 64  IGQLQQRFGQAENFCLLEGDILQLDWTAAIAD----RPRFANPSKVVANIPYNITGPILQ 119

Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
            LL     P    F  +VLL+Q+E A RL
Sbjct: 120 SLLGTIAQPRRPAFERLVLLVQQEVADRL 148

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q31RH6|RSMA_SYNE7 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus elongatus (strain PCC 7942) GN=rsmA PE=3 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 9/149 (6%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           RK  GQH++ +  I D++ AAA ++  D VLEIGPG G+LT  LL A   ++A+E D+ +
Sbjct: 4   RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRDL 63

Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           +G +++RF   +   +L+ D ++    + +      R   +  +KVVANIP+NI+  +++
Sbjct: 64  IGQLQQRFGQAENFCLLEGDILQLDWTAAIAD----RPRFANPSKVVANIPYNITGPILQ 119

Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
            LL     P    F  +VLL+Q+E A RL
Sbjct: 120 SLLGTIAQPRRPAFERLVLLVQQEVADRL 148

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 3/178 (1%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T+  +  KG  PRKS GQ++++++ I  ++A AA V  GD V+EIGPG G+LT  L    
Sbjct: 10  TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
             V+AIE D+ +   + E  A  D ++++  D +K      +  +    +      KVVA
Sbjct: 70  GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYS 280
           N+P+ I+T ++  LL      +E+VL++Q E   R L  P     +Y  +++ V +Y+
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYT 185

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rsmA PE=3 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)

Query: 108 LNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
           L SK G  PR+ LGQH+M++  I + +  AA V+E DIVLEIGPG G LT  L+     V
Sbjct: 10  LRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQV 69

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
           +A+E D  MV +++        L++++ DF++  +                  KVVANIP
Sbjct: 70  IAVELDGRMVEILKRELGEAPNLEIVRADFLEYDV-------------PDDVNKVVANIP 116

Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
           +NIS+ +  +LL +       VL  Q E A R+V EP   + +Y  + + VN  +
Sbjct: 117 YNISSPITFKLLELD--IDVAVLTYQREFAERMVAEPG--SKKYSRLTVMVNLLA 167

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B1XIV9|RSMA_SYNP2 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rsmA PE=3 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 9/151 (5%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           PRK  GQH++ + +I D++ AAA +Q  D VLEIGPG G+LT+ LL     +L++E D+ 
Sbjct: 3   PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQVEALLSVEIDRD 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   + + +       +L+ D+++  I +  L  F + ++     KVVANIP+NI+  ++
Sbjct: 63  LCKYMVKNYGDRPNFLLLEADYLQTDI-NEFLGDFPQFQNPR---KVVANIPYNITGPIL 118

Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
           ++LL     P  + F  +VLL+Q+E   RLV
Sbjct: 119 EKLLGTIDRPNSNPFESIVLLIQKEVGDRLV 149

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
8570453	239	Identical to dimethyladenosine transfera	0.666	0.794	0.772	1e-83
297842936	342	hypothetical protein ARALYDRAFT_470090 [	0.666	0.555	0.772	2e-83
15220982	343	Ribosomal RNA adenine dimethylase family	0.666	0.553	0.772	2e-83
225453766	335	PREDICTED: ribosomal RNA small subunit m	0.719	0.611	0.725	1e-82
356568329	341	PREDICTED: ribosomal RNA small subunit m	0.743	0.621	0.705	9e-82
224130164	210	predicted protein [Populus trichocarpa]	0.715	0.971	0.733	2e-81
356532056	341	PREDICTED: ribosomal RNA small subunit m	0.747	0.624	0.7	8e-81
449432199	347	PREDICTED: ribosomal RNA small subunit m	0.638	0.524	0.783	1e-79
255541450	338	dimethyladenosine transferase, putative	0.733	0.618	0.697	1e-78
357507115	349	Ribosomal RNA small subunit methyltransf	0.666	0.544	0.71	1e-74

>gi|8570453|gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis thaliana gb|AF051326 and contains a Ribosomal RNA Adenine Dimethylases PF|00398 domain. This gene may be cut off, partial [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query: 268 EYRPINIFVNFYS 280
           EYRPINI +NFYS
Sbjct: 227 EYRPINILINFYS 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 46  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 105

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 106 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 165

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 166 SRRLSHPDSSLAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 225

Query: 268 EYRPINIFVNFYS 280
           EYRPINI +NFYS
Sbjct: 226 EYRPINILINFYS 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220982|ref|NP_171690.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query: 268 EYRPINIFVNFYS 280
           EYRPINI +NFYS
Sbjct: 227 EYRPINILINFYS 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453766|ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis vinifera] gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 175/211 (82%), Gaps = 6/211 (2%)

Query: 75  AHSSIAGVQKGAASA--CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQ 132
           +H   + + +G+     CI CARSQDD YHAT+ ALNSKGR PRKSLGQHYMLNS IN+Q
Sbjct: 22  SHPKPSSLVQGSTRTPLCITCARSQDD-YHATLDALNSKGRTPRKSLGQHYMLNSSINEQ 80

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           LA  A +++GD++LEIGPGTGSLTNVLL+AGATVLAIEKD HM  LVRERFA  D+LKVL
Sbjct: 81  LADTADIRDGDVILEIGPGTGSLTNVLLDAGATVLAIEKDAHMAALVRERFAVTDRLKVL 140

Query: 193 QEDFVKCHIRSHMLSLFERRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
           QEDF+KCHI  H+ SL E +K+    S +AKVV+NIPFNISTDV+K LLPMGDIFSEVVL
Sbjct: 141 QEDFMKCHIHPHLFSLLESKKAKNKESRYAKVVSNIPFNISTDVVKILLPMGDIFSEVVL 200

Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           LLQ+ETALRLVE SLRT EYRPINIFVNFYS
Sbjct: 201 LLQDETALRLVEASLRTQEYRPINIFVNFYS 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568329|ref|XP_003552364.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max]

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 176/221 (79%), Gaps = 9/221 (4%)

Query: 67  LLPKPTRPAHSSIAGVQKGAASACIVCARS-------QDDDYHATIKALNSKGRFPRKSL 119
           LL +  +PAH S AGV++   +  +VCA           DDYHAT+KALNSKGRFPRKSL
Sbjct: 19  LLNRHHKPAHDSTAGVRR--RTPYVVCAEKGSRASTRSADDYHATLKALNSKGRFPRKSL 76

Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
           GQHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM  LV
Sbjct: 77  GQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALV 136

Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            ERF+S  +LKVL ED VKCH+RSHM SL       S  AKVVANIPFNISTDVIK LLP
Sbjct: 137 SERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLP 196

Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           MGDIFSEVVLLLQEETA+RLV  SLRT EYRPIN+FVNFYS
Sbjct: 197 MGDIFSEVVLLLQEETAVRLVVSSLRTPEYRPINVFVNFYS 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130164|ref|XP_002320768.1| predicted protein [Populus trichocarpa] gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 173/210 (82%), Gaps = 6/210 (2%)

Query: 75  AHSSIAGVQKGAASACIVCA-RSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQL 133
           AH+S+    K      I CA +   DDYHAT+KALNS+ R PRKSLGQHYMLN EIN+QL
Sbjct: 3   AHNSLTSPPKRTLD--ITCASKRSPDDYHATLKALNSRDRRPRKSLGQHYMLNDEINEQL 60

Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193
            A+A V+EGD++LEIGPGTGSLTNVL++AGATVLAIEKD HM  LVRERFA  ++ KVLQ
Sbjct: 61  VASANVEEGDLILEIGPGTGSLTNVLIDAGATVLAIEKDAHMAALVRERFADTNRFKVLQ 120

Query: 194 EDFVKCHIRSHMLSLFERRKSSSG---FAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
           EDF+KCHIRSHMLS+ E   S S    +AKVVANIPFNISTDVIKQLLP GDIFSE+VLL
Sbjct: 121 EDFIKCHIRSHMLSMLESMGSLSEKPRYAKVVANIPFNISTDVIKQLLPTGDIFSEIVLL 180

Query: 251 LQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           LQ+ETALRLVE SLRTSEYRPINIFVNFYS
Sbjct: 181 LQDETALRLVESSLRTSEYRPINIFVNFYS 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532056|ref|XP_003534590.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max]

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 154/220 (70%), Positives = 174/220 (79%), Gaps = 7/220 (3%)

Query: 67  LLPKPTRPAHSSIAGVQK------GAASACIVCARSQDDDYHATIKALNSKGRFPRKSLG 120
           LL +  +PAH S AGV+        +  +     RS DD YHAT+KALNSKGRFPRKSLG
Sbjct: 19  LLNRHHKPAHDSTAGVRNRTPYVVSSERSSTASTRSADD-YHATLKALNSKGRFPRKSLG 77

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           QHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM  LV 
Sbjct: 78  QHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALVS 137

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
           ERF+S  +LKVL ED VKCH+RSHM SL       S  AKVVANIPFNISTDVIK LLPM
Sbjct: 138 ERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLPM 197

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           GDIFSEVVLLLQEETA+RLV  SLRT EYRP+N+FVNFYS
Sbjct: 198 GDIFSEVVLLLQEETAVRLVVSSLRTPEYRPVNVFVNFYS 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432199|ref|XP_004133887.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Cucumis sativus]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/185 (78%), Positives = 165/185 (89%), Gaps = 3/185 (1%)

Query: 99  DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
           DDYH+TI+ALNSKGR PRKSLGQHYMLNS IN+QLAAAA V+EGD+VLEIGPGTGSLTNV
Sbjct: 59  DDYHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNV 118

Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF---ERRKSS 215
           L+N+GATVLA+EKD +M GLV ERFA+ ++LKVL EDFVKC++ SHM+SL    E  ++ 
Sbjct: 119 LINSGATVLAVEKDSYMAGLVDERFANTNRLKVLNEDFVKCNVSSHMMSLLKSIELSEAR 178

Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275
           S  AKVV+NIPFNISTD+IKQLLPMGDIFSEVVLLLQEE ALRLVE SLRTSEYRPIN+F
Sbjct: 179 SQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRTSEYRPINVF 238

Query: 276 VNFYS 280
           VNFYS
Sbjct: 239 VNFYS 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 169/215 (78%), Gaps = 6/215 (2%)

Query: 70  KPTRPAHSSIAGVQKGAASACIVC-ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSE 128
           KP+ P+ + I   +K      I C  +   DDY AT+KALNS+GR PRKSLGQHYMLNSE
Sbjct: 22  KPSVPSRNGITSARKK--RVLIRCDTKRSSDDYRATLKALNSRGRRPRKSLGQHYMLNSE 79

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
           +N+QL  AA V+EGD+VLEIGPGTGSLTN+LL+ GATVLAIEKD HM  +VRERF+  D+
Sbjct: 80  VNEQLVCAANVEEGDLVLEIGPGTGSLTNLLLDTGATVLAIEKDAHMAAIVRERFSHTDR 139

Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFS 245
            K+LQEDFVKCHIR HMLSL E   S       AKVVANIPFNISTDV+KQLLPMGDI S
Sbjct: 140 FKLLQEDFVKCHIRFHMLSLLENMTSLNEKPRRAKVVANIPFNISTDVVKQLLPMGDIIS 199

Query: 246 EVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           EV LLLQEETA RLVE SLRTSEYRPIN+FVNFYS
Sbjct: 200 EVALLLQEETASRLVESSLRTSEYRPINVFVNFYS 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507115|ref|XP_003623846.1| Ribosomal RNA small subunit methyltransferase A [Medicago truncatula] gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|355498861|gb|AES80064.1| Ribosomal RNA small subunit methyltransferase A [Medicago truncatula]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/200 (71%), Positives = 160/200 (80%), Gaps = 10/200 (5%)

Query: 91  IVCARSQD-------DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGD 143
           + C R  +       DDYHAT+KALNSKGR P+KSLGQ+YMLNS+IN+QL   A V+EGD
Sbjct: 46  VACGRGNNRASTTNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGD 105

Query: 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203
           +VLEIGPGTGSLTN L+N+GA VLA+EKD+HM  LV ERF+S  +LKVL ED VKCH+RS
Sbjct: 106 VVLEIGPGTGSLTNTLINSGAFVLAVEKDKHMAALVSERFSSTGKLKVLNEDIVKCHVRS 165

Query: 204 HMLSLF---ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
           H+ SL    E   S +  AKVVANIPF ISTDVIK LLPMGDIFSEVVLLLQEETALR V
Sbjct: 166 HISSLVGSTEDIDSDTRKAKVVANIPFYISTDVIKLLLPMGDIFSEVVLLLQEETALRWV 225

Query: 261 EPSLRTSEYRPINIFVNFYS 280
           EPSLRT EYRPINIFVNFYS
Sbjct: 226 EPSLRTPEYRPINIFVNFYS 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2025437	343	PFC1 "PALEFACE 1" [Arabidopsis	0.666	0.553	0.772	8.1e-76
TIGR_CMR|GSU_1864	276	GSU_1864 "dimethyladenosine tr	0.547	0.565	0.327	4e-19
TAIR|locus:2155031	380	DIM1B "adenosine dimethyl tran	0.473	0.355	0.381	2.4e-18
TAIR|locus:2061982	353	DIM1A "AT2G47420" [Arabidopsis	0.456	0.368	0.374	2.3e-14
TIGR_CMR|BA_0039	292	BA_0039 "dimethyladenosine tra	0.557	0.544	0.283	1.5e-13
TIGR_CMR|DET_0404	291	DET_0404 "dimethyladenosine tr	0.536	0.525	0.286	2.9e-13
DICTYBASE|DDB_G0283789	314	dimt1l "dimethyladenosine tran	0.452	0.410	0.369	5.4e-12
ASPGD|ASPL0000035233	403	AN3313 [Emericella nidulans (t	0.645	0.456	0.325	6.8e-12
TIGR_CMR|APH_0622	269	APH_0622 "dimethyladenosine tr	0.515	0.546	0.325	9.2e-12
TIGR_CMR|SPO_2458	279	SPO_2458 "dimethyladenosine tr	0.470	0.480	0.344	7.4e-11

TAIR|locus:2025437 PFC1 "PALEFACE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 149/193 (77%), Positives = 169/193 (87%)

Query:    91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
             + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct:    47 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query:   151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
             GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct:   107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query:   211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
              R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct:   167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query:   268 EYRPINIFVNFYS 280
             EYRPINI +NFYS
Sbjct:   227 EYRPINILINFYS 239

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0009409 "response to cold" evidence=IMP

GO:0016422 "mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_1864 GSU_1864 "dimethyladenosine transferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 54/165 (32%), Positives = 94/165 (56%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK+LGQ+++ +  +  ++AA  +   G+ +LEIGPG G+LT+ L      ++A+E D  +
Sbjct:     9 RKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQAGQLVAVELDDRL 68

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V L+R  FA    + +++ D +   +R  +      R  +  + KV AN+P+NIST V+ 
Sbjct:    69 VPLLRGSFAGNPSVTIIEGDILDLDLRETL-----GRYGTPPW-KVAANLPYNISTPVLF 122

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFY 279
             +LL   D+FS +VL+LQ+E   RL   P   + EY  +++    +
Sbjct:   123 RLLDARDLFSRLVLMLQKEVGNRLAAGPG--SKEYGVLSVLFQLH 165

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TAIR|locus:2155031 DIM1B "adenosine dimethyl transferase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 58/152 (38%), Positives = 88/152 (57%)

Query:   112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
             G F  KS GQH + N+ I D +  ++ ++  D VLEIGPGTG+LT  LL A   V+A+E 
Sbjct:    60 GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119

Query:   172 DQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
             D+ MV ++R+R +     D+L ++Q+D +K     H             F  VVANIP+N
Sbjct:   120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF-PH-------------FDLVVANIPYN 165

Query:   229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
             IS+ ++ +L+   + F    LLLQ+E + RL+
Sbjct:   166 ISSPLVAKLVYGSNTFRSATLLLQKEFSRRLL 197

GO:0000154 "rRNA modification" evidence=IEA;IGI;ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA;IGI;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA;ISS

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046085 "adenosine metabolic process" evidence=IMP

TAIR|locus:2061982 DIM1A "AT2G47420" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 55/147 (37%), Positives = 79/147 (53%)

Query:   117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
             KS GQH + N  + D +   A ++  D++LEIGPGTG+LT  LL AG  V+A+E D  MV
Sbjct:    30 KSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKEVIAVELDSRMV 89

Query:   177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
               ++ RF      ++LKV+Q D +K  +                F   VANIP+ IS+ +
Sbjct:    90 LELQRRFQGTPFSNRLKVIQGDVLKTELPR--------------FDICVANIPYQISSPL 135

Query:   234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
               +LL     F   V++ Q E A+RLV
Sbjct:   136 TFKLLFHPTSFRCAVIMYQREFAMRLV 162

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0001708 "cell fate specification" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0051301 "cell division" evidence=IMP

TIGR_CMR|BA_0039 BA_0039 "dimethyladenosine transferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 190 (71.9 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 47/166 (28%), Positives = 88/166 (53%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             +KSLGQ++++++ + +++   A +      +EIGPG G+LT  L      V+A E DQ +
Sbjct:    22 KKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 81

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             + ++ E  A    + V+ +D +K  +       FE  +       VVAN+P+ I+T ++ 
Sbjct:    82 LPILDETLAPYGNVTVINKDVLKADVHEVFSEQFEEGQD----VMVVANLPYYITTPILF 137

Query:   236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
             +LL         V+++Q+E   RL  +P   T EY  ++I + +Y+
Sbjct:   138 KLLEEKLPVRGFVVMMQKEVGDRLAAKPG--TKEYGSLSIAIQYYT 181

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|DET_0404 DET_0404 "dimethyladenosine transferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 188 (71.2 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 47/164 (28%), Positives = 89/164 (54%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK LGQH++++  + +++  AA ++  D V+E+GPG G LT  L+     V+A+E D  +
Sbjct:    31 RKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKRAGQVIAVELDDKL 90

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V  + E+F +    +++  D +K        S  E    +  + K+VAN+P+ I++ V++
Sbjct:    91 VTALTEKFKAYPNFRIIHSDILKT-------SPAEILGQNIPY-KLVANLPYYITSAVLR 142

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
             Q L        +V+++Q+E A  +V    +T +   + + V FY
Sbjct:   143 QFLEAEAKPELMVVMVQKEVAKNMVA---QTGDMGLLTLSVRFY 183

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

DICTYBASE|DDB_G0283789 dimt1l "dimethyladenosine transferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 180 (68.4 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 54/146 (36%), Positives = 77/146 (52%)

Query:   117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
             KS GQH + N  I D +   + ++  D VLEIGPGTG+LT  LL     V+AIE D  M 
Sbjct:    31 KSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPRMA 90

Query:   177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
               +++R A+      L+++  DF+K       L  F+           VAN+P+ IS+ +
Sbjct:    91 AELQKRVAASPYAQHLQIILGDFLKVD-----LPYFD---------VCVANVPYQISSPL 136

Query:   234 IKQLLPMGDIFSEVVLLLQEETALRL 259
               +LL    IF   VL+ Q+E ALRL
Sbjct:   137 TFKLLAHRPIFRTAVLMFQKEFALRL 162

GO:0031167 "rRNA methylation" evidence=IEA

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0000154 "rRNA modification" evidence=IEA

GO:0052909 "18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

ASPGD|ASPL0000035233 AN3313 [Emericella nidulans (taxid:162425)]

 Score = 182 (69.1 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 66/203 (32%), Positives = 98/203 (48%)

Query:    83 QKGA-ASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQE 141
             +K A ASA      S+ D   A  KA ++  +F    LGQH + N  I D +   A VQ 
Sbjct:     7 KKSARASASPYQKPSKGDGRSAAAKAGSAIFKF-NTDLGQHILKNGAIADNIVDKANVQP 65

Query:   142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ---EDFVK 198
                VLE+GPG G LT  +L     V+A+E D  M   + +R  +    K LQ    DF+K
Sbjct:    66 SQTVLEVGPGPGILTTRILEKAKKVVAVEFDPRMAAELTKRVQATPMEKKLQIVLGDFIK 125

Query:   199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
               +    L  F+           ++N P+ IS+ +I +LL M +     VL++Q E ALR
Sbjct:   126 TDLSK--LPPFQ---------VCISNTPYQISSPLIFKLLSMPNPPKMCVLMVQREFALR 174

Query:   259 LV-EPSLRTSEYRPINIFVNFYS 280
             L+  P    + Y  +++ V F+S
Sbjct:   175 LLARPG--DALYSRLSVNVQFFS 195

GO:0006547 "histidine metabolic process" evidence=RCA

GO:0008168 "methyltransferase activity" evidence=RCA

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005819 "spindle" evidence=IEA

TIGR_CMR|APH_0622 APH_0622 "dimethyladenosine transferase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 175 (66.7 bits), Expect = 9.2e-12, P = 9.2e-12
 Identities = 54/166 (32%), Positives = 93/166 (56%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
             +KSLGQ ++L+  I +++ + A   E   V+E+GPG G +T  +LN     L AIEKD+ 
Sbjct:     9 KKSLGQCFILDPAIAEKIVSYAGCLEQYNVIEVGPGLGIMTQSILNKEVRRLTAIEKDRR 68

Query:   175 MVGL---VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
             +  +   ++E  A  D    + ED +  +I        E+  S S   K+++N+P+NIS 
Sbjct:    69 LSNIHSKLKEAHAEYD---CIFEDILDVNI--------EQLLSQSPL-KMISNLPYNISV 116

Query:   232 DVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFV 276
              ++ +LLP    F +++L+ Q+E A R+V +P+  T  Y  ++I V
Sbjct:   117 ILLLKLLPYIHRFEKLILMFQKEVADRIVAQPN--TKSYSILSILV 160

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|SPO_2458 SPO_2458 "dimethyladenosine transferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 169 (64.5 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 52/151 (34%), Positives = 82/151 (54%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQ 173
             RKSLGQ+++L+  +  ++A  A  + E D VLEIGPG G LT  LL  GA  VLAIEKD 
Sbjct:    22 RKSLGQNFLLDLNLTAKIARQAGDLSECD-VLEIGPGPGGLTRGLLAEGARRVLAIEKDA 80

Query:   174 HMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
               +  + E  A+   +L+V+  D ++    +HM              ++ AN+P+N+ T+
Sbjct:    81 RCLPALAEIAAAYSGRLEVINGDALEIDPLAHMTPPI----------RIAANLPYNVGTE 130

Query:   233 VIKQLLPMGD---IFSEVVLLLQEETALRLV 260
             ++ + L   D    +  + L+ Q E A R+V
Sbjct:   131 LLVRWLTPRDWPPFWQSLTLMFQREVAERIV 161

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.182	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.1__44__AT1G01860.1	annotation not avaliable (342 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.4__628__AT2G26930.1	annotation not avaliable (383 aa)	•						•		0.770
	scaffold_502663.1	annotation not avaliable (615 aa)	•						•		0.714
	scaffold_303456.1	annotation not avaliable (125 aa)					•		•		0.704
	fgenesh2_kg.3__208__AT3G02660.1	annotation not avaliable (511 aa)	•						•		0.620
	fgenesh2_kg.8__2416__AT5G64050.1	annotation not avaliable (570 aa)	•						•		0.591
	scaffold_201253.1	annotation not avaliable (355 aa)	•						•		0.582
	scaffold_201045.1	annotation not avaliable (1763 aa)							•		0.575
	scaffold_200152.1	annotation not avaliable (534 aa)							•		0.551
	Al_scaffold_0002_1243	annotation not avaliable (355 aa)	•						•		0.549
	fgenesh1_pm.C_scaffold_2000068	annotation not avaliable (231 aa)	•						•		0.542

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	1e-41
COG0030	259	COG0030, KsgA, Dimethyladenosine transferase (rRNA	4e-40
PRK00274	272	PRK00274, ksgA, 16S ribosomal RNA methyltransferas	2e-35
TIGR00755	253	TIGR00755, ksgA, dimethyladenosine transferase	5e-34
pfam00398	254	pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla	3e-29
PRK14896	258	PRK14896, ksgA, 16S ribosomal RNA methyltransferas	2e-28
PTZ00338	294	PTZ00338, PTZ00338, dimethyladenosine transferase-	7e-25
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-05
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	8e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	1e-04
COG3963	194	COG3963, COG3963, Phospholipid N-methyltransferase	2e-04
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	2e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.001
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.002
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	0.003

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score =  140 bits (356), Expect = 1e-41
 Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 13/151 (8%)

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
           + D++  AA ++ GD VLEIGPG G+LT  LL     V AIE D  +   +RE+FA+ D 
Sbjct: 1   VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAAADN 60

Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVV 248
           L V+  D +K  +                  KVV N+P+NIST ++ +LL     F + V
Sbjct: 61  LTVIHGDALKFDLPKL------------QPYKVVGNLPYNISTPILFKLLEEPPAFRDAV 108

Query: 249 LLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           L++Q+E A RL      + +Y  +++ +  Y
Sbjct: 109 LMVQKEVARRLAAKPG-SKDYGRLSVLLQPY 138

Length = 169

>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

 Score =  139 bits (353), Expect = 4e-40
 Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 14/166 (8%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P K LGQ+++++  + D++  AA +  GD VLEIGPG G+LT  LL   A V AIE D+ 
Sbjct: 4   PNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  +++ERFA  D L V+  D +K               S +   KVVAN+P+NIS+ ++
Sbjct: 64  LAEVLKERFAPYDNLTVINGDALK-----------FDFPSLAQPYKVVANLPYNISSPIL 112

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
            +LL    I  ++VL++Q+E A RLV +P   + +Y  +++ V +Y
Sbjct: 113 FKLLEEKFIIQDMVLMVQKEVAERLVAKPG--SKDYGRLSVLVQYY 156

Length = 259

>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

 Score =  127 bits (323), Expect = 2e-35
 Identities = 61/177 (34%), Positives = 100/177 (56%), Gaps = 16/177 (9%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T + L   G   +KSLGQ+++++  I D++  AA  Q GD VLEIGPG G+LT  LL   
Sbjct: 5   TRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA 64

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
           A V A+E D+ +  ++ E FA  D L +++ D +K           +  +      KVVA
Sbjct: 65  AKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALK----------VDLSELQP--LKVVA 111

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
           N+P+NI+T ++  LL   D   ++V+++Q+E A R+V +P   +  Y  +++ V +Y
Sbjct: 112 NLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPG--SKAYGRLSVLVQYY 166

Length = 272

>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase

 Score =  123 bits (311), Expect = 5e-34
 Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 15/167 (8%)

Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
            PRKSLGQ+++++  +  ++  AA V EGD+VLEIGPG G+LT  LL     V AIE D+
Sbjct: 2   RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDR 61

Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
            +   +R+  +  + L++++ D +K                     KVV+N+P+NIS+ +
Sbjct: 62  RLAERLRKLLSLYENLEIIEGDALK-----------VDLNEFPKQLKVVSNLPYNISSPL 110

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
           I +LL   D F   VL++Q+E A RL  +P   + +Y  +++ V ++
Sbjct: 111 IFKLL-EKDKFRLAVLMVQKEVAERLTAKPG--SKDYGRLSVLVQYF 154

In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253

>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase

 Score =  111 bits (279), Expect = 3e-29
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 13/154 (8%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
            R+  GQ+++ N ++ +++   A +QE D VLEIGPG G+LT  L      V+AIE D  
Sbjct: 3   GRRKYGQNFLTNPKVINRIVDKANLQESDTVLEIGPGKGALTTELAKRAKQVVAIEIDPR 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   ++E+ A    ++V+ +DF+K        S  +          VV NIP+NI+T ++
Sbjct: 63  LAKRLQEKLALHPNVEVVHQDFLK-------FSFPKDDP-----FLVVGNIPYNITTPIV 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTS 267
           K+LL       +++L++Q+E A RL+  P +R+ 
Sbjct: 111 KKLLFESRFGVKMLLVVQKEFARRLLARPKIRSR 144

Length = 254

>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

 Score =  109 bits (274), Expect = 2e-28
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 17/165 (10%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
             K LGQH++++  + D++   A   +GD VLEIGPG G+LT+ L      V AIE D  
Sbjct: 3   MNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   +R+   +   +++++ D +K  +                F KVV+N+P+ IS+ + 
Sbjct: 63  LAEFLRDDEIAAGNVEIIEGDALKVDLPE--------------FNKVVSNLPYQISSPIT 108

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
            +LL  G  F   VL+ Q+E A R+V     T EY  +++ V +Y
Sbjct: 109 FKLLKHG--FEPAVLMYQKEFAERMVAKP-GTKEYGRLSVMVQYY 150

Length = 258

>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein; Provisional

 Score =  100 bits (251), Expect = 7e-25
 Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 17/147 (11%)

Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           K  GQH + N  + D++   AA++  D VLEIGPGTG+LT  LL     V+AIE D  MV
Sbjct: 12  KKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMV 71

Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
             +++RF +     +L+V++ D +K        + F        F   VAN+P+ IS+ +
Sbjct: 72  AELKKRFQNSPLASKLEVIEGDALK--------TEFPY------FDVCVANVPYQISSPL 117

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
           + +LL    +F   VL+ Q+E ALRL+
Sbjct: 118 VFKLLAHRPLFRCAVLMFQKEFALRLL 144

Length = 294

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER--FASIDQLKVLQEDF 196
            G  VL+IG GTGSL   L     GA V  ++    M+ L RE    A   ++  +Q D 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
              AVQ GD VL++G G G+    L   +     V+ I++ + M+ L +ER A
Sbjct: 13  ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA 65

Length = 241

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----Q 188
           LA  A  ++GD VLE+G G+G +  V    G  V+ ++ + + V   +      +     
Sbjct: 15  LAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNG 74

Query: 189 LKVLQEDFVKC 199
           ++V++ D  + 
Sbjct: 75  VEVIRSDLFEP 85

Length = 188

>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQL 189
           +A+    + G  VLE+GPGTG +T  +L+ G    ++ AIE     V  + + +  ++ +
Sbjct: 40  MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNII 99

Query: 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV-VANIPFNISTDVIKQLL 238
                      +R+  L   + +   S  + + + N P +    +++ LL
Sbjct: 100 NGDAF-----DLRTT-LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLL 143

Length = 194

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLK 190
           +     ++ GD VLEIG G+G    VL      V++IE+ + +    R    +   + + 
Sbjct: 64  MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVT 123

Query: 191 VLQED 195
           V   D
Sbjct: 124 VRHGD 128

Length = 209

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 21/150 (14%)

Query: 140 QEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQE 194
           + G  VL++G GTG LT +L   L  GA V+ I+  +  +   +E       + ++ +Q 
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61

Query: 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEE 254
           D         +  L + +   + F  V++N   N   D          +  E++ +L+  
Sbjct: 62  D---------IEELPQLQLEDNSFDVVISNEVLNHLPD-------PDKVLEEIIRVLKPG 105

Query: 255 TALRLVEPSLRTSEYRPINIFVNFYSGQFC 284
             L + +P L +     +      Y+G   
Sbjct: 106 GVLIVSDPVLLSELPALLEDLERLYAGVLE 135

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201
           L+IG GTG+L   LL A  G     ++     +    ER A++  L  ++        
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA 58

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT---NVLLNAGATVLAIEKDQHMVGLVR 180
           M   EI     +   +++GD++L+IG GTGS+T   ++L+     V A++KD+  + L R
Sbjct: 23  MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR 82

Query: 181 ---ERFASIDQLKVLQED 195
              E+F  ++ + +++ +
Sbjct: 83  RNAEKFGVLNNIVLIKGE 100

Length = 198

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRE 181
           M   EI     +    + GD + +IG GTGS+T     AG    V+AIE+D+  + L+  
Sbjct: 17  MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER 76

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.95
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.94
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.94
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.91
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.91
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.9
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	99.9
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	99.87
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.73
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.64
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.63
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.63
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.61
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.6
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.55
PHA03412	241	putative methyltransferase; Provisional	99.51
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.46
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.45
COG4123	248	Predicted O-methyltransferase [General function pr	99.44
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.42
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.42
PRK14967	223	putative methyltransferase; Provisional	99.41
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.4
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.4
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.39
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.39
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.39
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.39
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.38
COG2890	280	HemK Methylase of polypeptide chain release factor	99.37
PHA03411	279	putative methyltransferase; Provisional	99.37
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.36
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.35
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.33
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.33
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.33
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.33
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.32
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.32
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.32
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	99.31
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.31
PRK11207	197	tellurite resistance protein TehB; Provisional	99.31
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.31
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.3
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.3
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.29
PRK14968	188	putative methyltransferase; Provisional	99.29
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.29
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.29
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.28
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.28
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.28
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.27
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.27
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.27
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.27
PLN02244	340	tocopherol O-methyltransferase	99.27
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.26
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.26
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.25
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.25
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.25
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.23
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.23
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.22
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.21
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.21
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.21
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.2
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.19
COG4122	219	Predicted O-methyltransferase [General function pr	99.18
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.18
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.18
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.18
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.18
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.17
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.17
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.16
PRK07402	196	precorrin-6B methylase; Provisional	99.16
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.15
PLN02336	475	phosphoethanolamine N-methyltransferase	99.15
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.14
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.14
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.13
PRK12335	287	tellurite resistance protein TehB; Provisional	99.13
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.13
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.13
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.12
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.12
KOG2904	328	consensus Predicted methyltransferase [General fun	99.11
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.11
PRK04266	226	fibrillarin; Provisional	99.11
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.1
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.1
PLN02672	1082	methionine S-methyltransferase	99.1
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.1
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.1
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.1
PLN02476	278	O-methyltransferase	99.09
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.09
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.08
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.07
PLN02336	475	phosphoethanolamine N-methyltransferase	99.07
PRK05785	226	hypothetical protein; Provisional	99.07
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.06
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.06
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.05
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.04
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.04
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.04
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.04
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.04
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.04
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.04
PRK04148	134	hypothetical protein; Provisional	99.03
KOG1271	227	consensus Methyltransferases [General function pre	99.02
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.02
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.02
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.02
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.01
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.01
PRK06922	677	hypothetical protein; Provisional	99.0
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.0
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.0
PLN02490	340	MPBQ/MSBQ methyltransferase	98.99
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.99
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.99
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.99
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.98
PRK08317	241	hypothetical protein; Provisional	98.98
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.98
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.97
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.97
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.97
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.96
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.96
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.95
PRK06202	232	hypothetical protein; Provisional	98.95
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.94
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.94
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.92
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.91
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.91
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.91
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.9
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.9
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.9
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.88
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.86
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.86
PRK00811	283	spermidine synthase; Provisional	98.86
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.85
PLN03075	296	nicotianamine synthase; Provisional	98.83
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.82
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.82
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.78
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.78
PRK04457	262	spermidine synthase; Provisional	98.78
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.77
PTZ00146	293	fibrillarin; Provisional	98.77
COG2520	341	Predicted methyltransferase [General function pred	98.77
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.73
TIGR00438	188	rrmJ cell division protein FtsJ.	98.72
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.69
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.69
TIGR03438	301	probable methyltransferase. This model represents	98.67
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.66
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.65
PRK03612	521	spermidine synthase; Provisional	98.65
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.65
PRK01581	374	speE spermidine synthase; Validated	98.64
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.64
PLN02366	308	spermidine synthase	98.63
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.62
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.61
PRK10742	250	putative methyltransferase; Provisional	98.57
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.54
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.53
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.51
KOG2730	263	consensus Methylase [General function prediction o	98.51
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.5
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.49
COG2521	287	Predicted archaeal methyltransferase [General func	98.49
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.44
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.43
KOG4300	252	consensus Predicted methyltransferase [General fun	98.4
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.4
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.38
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.36
COG0286	489	HsdM Type I restriction-modification system methyl	98.35
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.26
PLN02823	336	spermine synthase	98.26
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.25
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.22
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.21
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.21
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.21
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.21
COG4076	252	Predicted RNA methylase [General function predicti	98.2
KOG3010	261	consensus Methyltransferase [General function pred	98.1
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.08
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.07
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.03
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.01
PF13679	141	Methyltransf_32: Methyltransferase domain	97.99
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.93
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.83
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.7
KOG2361	264	consensus Predicted methyltransferase [General fun	97.65
COG3897	218	Predicted methyltransferase [General function pred	97.65
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.62
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.61
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.61
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.53
PRK00536	262	speE spermidine synthase; Provisional	97.5
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.49
KOG2899	288	consensus Predicted methyltransferase [General fun	97.47
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.47
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.46
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.45
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.44
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.43
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.4
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.33
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.26
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.26
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.18
PRK11524	284	putative methyltransferase; Provisional	97.18
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.16
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.1
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.02
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.0
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.97
PHA01634	156	hypothetical protein	96.91
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.91
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.91
PRK13699	227	putative methylase; Provisional	96.9
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.88
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.8
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.78
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.78
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.76
KOG2940	325	consensus Predicted methyltransferase [General fun	96.73
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.67
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.63
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.63
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.56
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.49
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.46
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.42
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.39
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.39
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.38
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.36
TIGR00497	501	hsdM type I restriction system adenine methylase (	96.32
KOG1227	351	consensus Putative methyltransferase [General func	96.21
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.21
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.19
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.14
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.08
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.08
PRK10458	467	DNA cytosine methylase; Provisional	96.0
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.86
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.79
KOG2912	419	consensus Predicted DNA methylase [Function unknow	95.78
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.78
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	95.57
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.5
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.36
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.24
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.12
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.47
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	94.4
KOG3115	249	consensus Methyltransferase-like protein [General	94.3
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	94.24
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	94.19
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.18
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.18
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	93.85
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.75
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	93.66
KOG2360	413	consensus Proliferation-associated nucleolar prote	92.94
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	92.9
COG1565	370	Uncharacterized conserved protein [Function unknow	92.81
COG0863	302	DNA modification methylase [DNA replication, recom	92.68
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	92.66
COG1568	354	Predicted methyltransferases [General function pre	92.47
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	92.2
COG2961	279	ComJ Protein involved in catabolism of external DN	92.16
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.01
PRK05867	253	short chain dehydrogenase; Provisional	91.82
PRK08339	263	short chain dehydrogenase; Provisional	91.69
PRK06172	253	short chain dehydrogenase; Provisional	91.52
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.5
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	91.49
PRK08340	259	glucose-1-dehydrogenase; Provisional	91.47
PRK12829	264	short chain dehydrogenase; Provisional	91.43
PRK07063	260	short chain dehydrogenase; Provisional	91.28
KOG1331	293	consensus Predicted methyltransferase [General fun	91.26
PRK09072	263	short chain dehydrogenase; Provisional	91.19
PRK07326	237	short chain dehydrogenase; Provisional	91.1
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	91.06
PRK06949	258	short chain dehydrogenase; Provisional	90.92
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.88
KOG3924	419	consensus Putative protein methyltransferase invol	90.88
PRK07523	255	gluconate 5-dehydrogenase; Provisional	90.75
PLN02253	280	xanthoxin dehydrogenase	90.53
PRK06139	330	short chain dehydrogenase; Provisional	90.45
PRK06124	256	gluconate 5-dehydrogenase; Provisional	90.39
PRK07677	252	short chain dehydrogenase; Provisional	90.32
PRK07454	241	short chain dehydrogenase; Provisional	90.28
PRK08267	260	short chain dehydrogenase; Provisional	90.2
PRK07890	258	short chain dehydrogenase; Provisional	90.18
PRK07024	257	short chain dehydrogenase; Provisional	90.17
PRK06194	287	hypothetical protein; Provisional	90.04
PRK07478	254	short chain dehydrogenase; Provisional	89.95
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	89.87
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.8
PRK05876	275	short chain dehydrogenase; Provisional	89.75
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	89.52
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	89.51
PRK05854	313	short chain dehydrogenase; Provisional	89.5
PRK05866	293	short chain dehydrogenase; Provisional	89.5
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.43
COG1255	129	Uncharacterized protein conserved in archaea [Func	89.42
PRK07109	334	short chain dehydrogenase; Provisional	89.4
PRK08862	227	short chain dehydrogenase; Provisional	89.38
PRK07904	253	short chain dehydrogenase; Provisional	89.33
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	89.31
PRK08213	259	gluconate 5-dehydrogenase; Provisional	89.28
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	89.25
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.24
PRK07097	265	gluconate 5-dehydrogenase; Provisional	89.23
PRK06138	252	short chain dehydrogenase; Provisional	89.18
PRK05872	296	short chain dehydrogenase; Provisional	89.14
PRK08226	263	short chain dehydrogenase; Provisional	89.11
PRK07035	252	short chain dehydrogenase; Provisional	88.86
PRK08643	256	acetoin reductase; Validated	88.86
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.81
PRK08589	272	short chain dehydrogenase; Validated	88.74
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	88.7
PRK08277	278	D-mannonate oxidoreductase; Provisional	88.69
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	88.66
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.59
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	88.5
PRK07774	250	short chain dehydrogenase; Provisional	88.47
PRK08303	305	short chain dehydrogenase; Provisional	88.45
PRK09242	257	tropinone reductase; Provisional	88.41
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	88.32
PRK07062	265	short chain dehydrogenase; Provisional	88.31
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	88.29
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	88.18
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	88.17
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	87.97
PRK07814	263	short chain dehydrogenase; Provisional	87.84
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	87.72
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.72
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	87.59
PRK07791	286	short chain dehydrogenase; Provisional	87.46
PRK05650	270	short chain dehydrogenase; Provisional	87.44
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	87.25
PRK07453	322	protochlorophyllide oxidoreductase; Validated	87.16
PRK08265	261	short chain dehydrogenase; Provisional	87.13
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	87.1
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	86.92
PLN02780	320	ketoreductase/ oxidoreductase	86.9
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	86.87
PRK08085	254	gluconate 5-dehydrogenase; Provisional	86.79
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	86.75
KOG2920	282	consensus Predicted methyltransferase [General fun	86.59
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	86.49
PRK06196	315	oxidoreductase; Provisional	86.44
PRK05993	277	short chain dehydrogenase; Provisional	86.42
PRK07576	264	short chain dehydrogenase; Provisional	86.42
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	86.39
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.25
PRK12939	250	short chain dehydrogenase; Provisional	86.18
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	86.17
PLN03209	576	translocon at the inner envelope of chloroplast su	86.16
PRK06720	169	hypothetical protein; Provisional	86.16
COG0300	265	DltE Short-chain dehydrogenases of various substra	86.11
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	86.05
PRK06182	273	short chain dehydrogenase; Validated	85.82
PRK06181	263	short chain dehydrogenase; Provisional	85.81
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	85.79
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	85.51
PRK06125	259	short chain dehydrogenase; Provisional	85.48
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	85.28
PRK06197	306	short chain dehydrogenase; Provisional	85.28
PTZ00357	1072	methyltransferase; Provisional	85.25
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	85.22
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	85.15
PRK06500	249	short chain dehydrogenase; Provisional	85.09
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	85.03
PRK07831	262	short chain dehydrogenase; Provisional	85.02
KOG2782	303	consensus Putative SAM dependent methyltransferase	85.01
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	84.83
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	84.66
PRK10669	558	putative cation:proton antiport protein; Provision	84.64
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	84.62
COG0569	225	TrkA K+ transport systems, NAD-binding component [	84.57
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	84.5
PRK09496	453	trkA potassium transporter peripheral membrane com	84.33
COG2933	358	Predicted SAM-dependent methyltransferase [General	84.27
PRK08251	248	short chain dehydrogenase; Provisional	84.08
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.79
PRK07067	257	sorbitol dehydrogenase; Provisional	83.74
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	83.73
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	83.71
PRK05717	255	oxidoreductase; Validated	83.34
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	83.01
PRK06057	255	short chain dehydrogenase; Provisional	83.0
PRK06914	280	short chain dehydrogenase; Provisional	82.92
PRK08628	258	short chain dehydrogenase; Provisional	82.83
PRK06940	275	short chain dehydrogenase; Provisional	82.73
PRK05855	582	short chain dehydrogenase; Validated	82.73
PRK09186	256	flagellin modification protein A; Provisional	82.66
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	82.61
PRK07825	273	short chain dehydrogenase; Provisional	82.53
PRK06701	290	short chain dehydrogenase; Provisional	82.52
PRK07074	257	short chain dehydrogenase; Provisional	82.44
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	82.35
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	82.33
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	82.26
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	82.2
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	82.16
PRK07102	243	short chain dehydrogenase; Provisional	82.12
PRK03562	621	glutathione-regulated potassium-efflux system prot	82.07
PRK05599	246	hypothetical protein; Provisional	82.03
PRK06180	277	short chain dehydrogenase; Provisional	81.94
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	81.84
KOG3201	201	consensus Uncharacterized conserved protein [Funct	81.8
TIGR02415	254	23BDH acetoin reductases. One member of this famil	81.63
PRK05875	276	short chain dehydrogenase; Provisional	81.61
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	81.58
PRK08703	239	short chain dehydrogenase; Provisional	81.09
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	80.93
PRK08324	681	short chain dehydrogenase; Validated	80.78
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	80.78
PRK09291	257	short chain dehydrogenase; Provisional	80.74
COG4798	238	Predicted methyltransferase [General function pred	80.73
PRK06198	260	short chain dehydrogenase; Provisional	80.42
PRK07806	248	short chain dehydrogenase; Provisional	80.4
PRK08278	273	short chain dehydrogenase; Provisional	80.39
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	80.2
KOG1208	314	consensus Dehydrogenases with different specificit	80.15

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=4.4e-27  Score=207.35  Aligned_cols=159  Identities=38%  Similarity=0.618  Sum_probs=147.8

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~  193 (285)
                      .+.+.+||||+.++.+++.+++...+.+++.|||||+|.|.+|..|++.+.+|++||+|+.+++.+++.+...+|+++++
T Consensus         3 k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~   82 (259)
T COG0030           3 RPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN   82 (259)
T ss_pred             CCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence            45688999999999999999999999999999999999999999999999999999999999999999987667999999


Q ss_pred             cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (285)
Q Consensus       194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~  273 (285)
                      +|+++.++..           ...++.||+|+||+++++++.+|+.....+..+++|+|+++++|++ +.|+++.|++|+
T Consensus        83 ~DaLk~d~~~-----------l~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~Ls  150 (259)
T COG0030          83 GDALKFDFPS-----------LAQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRLS  150 (259)
T ss_pred             CchhcCcchh-----------hcCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchhh
Confidence            9999987632           1167999999999999999999999988888999999999999999 999999999999


Q ss_pred             HHHHHhhcccc
Q 023240          274 IFVNFYSGQFC  284 (285)
Q Consensus       274 ~~~~~f~~~~~  284 (285)
                      +++|+||++.+
T Consensus       151 V~~q~~~~v~~  161 (259)
T COG0030         151 VLVQYYADVEI  161 (259)
T ss_pred             hhhhheEEEEE
Confidence            99999999754

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.94  E-value=1.9e-26  Score=209.11  Aligned_cols=159  Identities=35%  Similarity=0.529  Sum_probs=146.5

Q ss_pred             CCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc---CC
Q 023240          111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---ID  187 (285)
Q Consensus       111 ~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~---~~  187 (285)
                      +++.+++.+||||+.++.++..+++.+.+.++.+|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++..   .+
T Consensus         6 ~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~   85 (294)
T PTZ00338          6 SGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLAS   85 (294)
T ss_pred             CCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            467899999999999999999999999998899999999999999999999888999999999999999998864   35


Q ss_pred             CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCC
Q 023240          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS  267 (285)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~  267 (285)
                      +++++++|+.+.++              ..+|+||+|+||++.++++.+++.....+..+++++|+++++|++ +.|+++
T Consensus        86 ~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~k  150 (294)
T PTZ00338         86 KLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGDE  150 (294)
T ss_pred             cEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCCc
Confidence            89999999988643              357999999999999999999998777888999999999999999 999999


Q ss_pred             CchhHHHHHHHhhcccc
Q 023240          268 EYRPINIFVNFYSGQFC  284 (285)
Q Consensus       268 ~y~~l~~~~~~f~~~~~  284 (285)
                      .|++|++++|+||++.+
T Consensus       151 ~y~~LSv~~q~~~~~~~  167 (294)
T PTZ00338        151 LYCRLSVNTQLLCRVTH  167 (294)
T ss_pred             ccCHHHHHHHHHhceEE
Confidence            99999999999999754

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.94  E-value=9.8e-26  Score=202.91  Aligned_cols=168  Identities=36%  Similarity=0.568  Sum_probs=150.5

Q ss_pred             HHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Q 023240          103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       103 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~  182 (285)
                      .+.+.+..++..+++.+||+|.+++.+++.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++
T Consensus         4 ~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~   83 (272)
T PRK00274          4 RTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAET   83 (272)
T ss_pred             hHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHh
Confidence            34556777788999999999999999999999999988899999999999999999999888999999999999999988


Q ss_pred             hhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCC
Q 023240          183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEP  262 (285)
Q Consensus       183 ~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~  262 (285)
                      +.. ++++++++|+.++++.+            -.++.||+||||+..++++.+++.....+..+++++|+++++|++ +
T Consensus        84 ~~~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~-a  149 (272)
T PRK00274         84 FAE-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV-A  149 (272)
T ss_pred             hcc-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-C
Confidence            754 68999999999986421            115899999999999999999997666678899999999999999 9


Q ss_pred             CCCCCCchhHHHHHHHhhcccc
Q 023240          263 SLRTSEYRPINIFVNFYSGQFC  284 (285)
Q Consensus       263 ~~~~~~y~~l~~~~~~f~~~~~  284 (285)
                      .|+.+.|+++|+++|+||++.+
T Consensus       150 ~pg~~~y~~lSv~~~~~~~~~~  171 (272)
T PRK00274        150 KPGSKAYGRLSVLVQYYCDVEK  171 (272)
T ss_pred             CCCCccccHHHHHHHHHcceEE
Confidence            9999999999999999999754

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=188.30  Aligned_cols=154  Identities=33%  Similarity=0.564  Sum_probs=138.9

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~  193 (285)
                      .+++.+||||+.++.+++.+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...+++++++
T Consensus         2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~   81 (258)
T PRK14896          2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE   81 (258)
T ss_pred             CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence            57789999999999999999999998889999999999999999999998899999999999999999886556899999


Q ss_pred             cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (285)
Q Consensus       194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~  273 (285)
                      +|+.++++              ..+|.|++|+||+..++++.+++.  ..+..+.++++++.+.|++ +.+|++.|++++
T Consensus        82 ~D~~~~~~--------------~~~d~Vv~NlPy~i~s~~~~~l~~--~~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls  144 (258)
T PRK14896         82 GDALKVDL--------------PEFNKVVSNLPYQISSPITFKLLK--HGFEPAVLMYQKEFAERMV-AKPGTKEYGRLS  144 (258)
T ss_pred             eccccCCc--------------hhceEEEEcCCcccCcHHHHHHHh--hccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence            99998753              236999999999999999888875  3345678999999999999 999999999999


Q ss_pred             HHHHHhhcccc
Q 023240          274 IFVNFYSGQFC  284 (285)
Q Consensus       274 ~~~~~f~~~~~  284 (285)
                      +..+++|++.+
T Consensus       145 v~~~~~~~~~~  155 (258)
T PRK14896        145 VMVQYYADVEI  155 (258)
T ss_pred             HHHHHHeeeEE
Confidence            99999998743

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.91  E-value=1.5e-23  Score=186.78  Aligned_cols=158  Identities=35%  Similarity=0.590  Sum_probs=140.2

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~  193 (285)
                      .+++.+||||+.++.+++.+++.+...++.+|||||||+|.++..+++.+.+|+++|+|+.+++.++.++...+++++++
T Consensus         2 ~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~   81 (253)
T TIGR00755         2 RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIE   81 (253)
T ss_pred             CCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEE
Confidence            57889999999999999999999998889999999999999999999998889999999999999998876556899999


Q ss_pred             cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (285)
Q Consensus       194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~  273 (285)
                      +|+.+.++..         .  +..+.|++|+||++.++++.+++. ...+..+.+++|+++++||+ +.|+++.|+.++
T Consensus        82 ~D~~~~~~~~---------~--d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~ls  148 (253)
T TIGR00755        82 GDALKVDLPD---------F--PKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRLS  148 (253)
T ss_pred             CchhcCChhH---------c--CCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHHH
Confidence            9999987521         0  011599999999999999999985 34556789999999999999 999999999999


Q ss_pred             HHHHHhhcccc
Q 023240          274 IFVNFYSGQFC  284 (285)
Q Consensus       274 ~~~~~f~~~~~  284 (285)
                      ++.++||++.+
T Consensus       149 v~~~~~~~~~~  159 (253)
T TIGR00755       149 VLVQYFANVEI  159 (253)
T ss_pred             HHHHHHcceEE
Confidence            99999998754

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.90  E-value=5.5e-23  Score=172.35  Aligned_cols=142  Identities=37%  Similarity=0.559  Sum_probs=128.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ++.+++.+.+.++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...++++++++|+.++++        
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~--------   73 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDL--------   73 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCc--------
Confidence            456778888888889999999999999999998889999999999999999998766689999999999864        


Q ss_pred             hhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHHHHHHHhhcccc
Q 023240          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFC  284 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~~~~~~f~~~~~  284 (285)
                          ....+|.|++||||+..++++.+++........+.+++|++.++|++ +.|+++.|+.++++.++||++.+
T Consensus        74 ----~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~~~~  143 (169)
T smart00650       74 ----PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFDVKI  143 (169)
T ss_pred             ----cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHeeEEE
Confidence                22468999999999999999999998777778999999999999999 99999999999999999998754

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.90  E-value=4.2e-23  Score=180.04  Aligned_cols=160  Identities=38%  Similarity=0.547  Sum_probs=149.6

Q ss_pred             CCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---
Q 023240          111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---  187 (285)
Q Consensus       111 ~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---  187 (285)
                      .+..+.+.||||+.-.+.+++.|++...+++++.|||+|.|||.+|..|.+.|++|+|+|+|+.|++...+++...+   
T Consensus        28 ~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~  107 (315)
T KOG0820|consen   28 GGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSG  107 (315)
T ss_pred             cCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccc
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999988654   


Q ss_pred             CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCC
Q 023240          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS  267 (285)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~  267 (285)
                      .+++++||+...+              .+.||.+|+|.||+++++++..++..+..+..+..++|.+++.|++ +.||++
T Consensus       108 kLqV~~gD~lK~d--------------~P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pgd~  172 (315)
T KOG0820|consen  108 KLQVLHGDFLKTD--------------LPRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPGDS  172 (315)
T ss_pred             eeeEEecccccCC--------------CcccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCCCc
Confidence            7999999999864              3679999999999999999999999999999999999999999998 999999


Q ss_pred             CchhHHHHHHHhhccccC
Q 023240          268 EYRPINIFVNFYSGQFCI  285 (285)
Q Consensus       268 ~y~~l~~~~~~f~~~~~~  285 (285)
                      .|-++++.+|++-++.+|
T Consensus       173 ~Ycrlsin~q~~a~v~~i  190 (315)
T KOG0820|consen  173 LYCRLSINVQLLARVTHI  190 (315)
T ss_pred             hhceeehhhHHhhcchhh
Confidence            999999999999887543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=99.87  E-value=1e-21  Score=175.95  Aligned_cols=162  Identities=34%  Similarity=0.575  Sum_probs=143.4

Q ss_pred             CCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEE
Q 023240          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (285)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~  192 (285)
                      ..+++.+||||+.++.+++.+++.+.+.++..|||||+|.|.+|..|++.+.+|+++|+++.+++.+++.+...++++++
T Consensus         2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi   81 (262)
T PF00398_consen    2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVI   81 (262)
T ss_dssp             -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEE
T ss_pred             CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceee
Confidence            35778999999999999999999999999999999999999999999999999999999999999999988866799999


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCc-eeeeEeeehHhHHHHhcCCCCCCCCchh
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRP  271 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~-~~~~~~~~~~~~~~rl~~~~~~~~~y~~  271 (285)
                      ++|+.+++..+.         .......||+|+||+..++++.+++..... ...+.++++++.++|++ +.|+.+.|++
T Consensus        82 ~~D~l~~~~~~~---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~  151 (262)
T PF00398_consen   82 NGDFLKWDLYDL---------LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSR  151 (262)
T ss_dssp             ES-TTTSCGGGH---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSH
T ss_pred             ecchhccccHHh---------hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccch
Confidence            999999875421         134678999999999999999998874333 57899999999999999 9999999999


Q ss_pred             HHHHHHHhhcccc
Q 023240          272 INIFVNFYSGQFC  284 (285)
Q Consensus       272 l~~~~~~f~~~~~  284 (285)
                      +++++++||++.+
T Consensus       152 lsv~~q~~~~i~~  164 (262)
T PF00398_consen  152 LSVLAQAFFDIKL  164 (262)
T ss_dssp             HHHHHHHHEEEEE
T ss_pred             hhhhhhhhhceeE
Confidence            9999999999854

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=8.7e-17  Score=137.32  Aligned_cols=144  Identities=20%  Similarity=0.309  Sum_probs=117.8

Q ss_pred             HHHHHHhcCCC-chHHHHHHHHhCCC---CC-------------ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 023240           89 ACIVCARSQDD-DYHATIKALNSKGR---FP-------------RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG  151 (285)
Q Consensus        89 ~mv~~q~~~~~-~~~~~~~~~~~~~~---~~-------------~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG  151 (285)
                      .|+..+++.++ ...++.+.+...+.   -+             ....|+ ++..+.++..|++.+.++++++|||||||
T Consensus         4 ~~l~~~lr~~~i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtG   82 (209)
T COG2518           4 RMLVERLRTEGITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQ-TISAPHMVARMLQLLELKPGDRVLEIGTG   82 (209)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCc-eecCcHHHHHHHHHhCCCCCCeEEEECCC
Confidence            67888888888 44777777654321   11             012355 89999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc-CCCC
Q 023240          152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFN  228 (285)
Q Consensus       152 ~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n-~P~~  228 (285)
                      +||.+..||+...+|++||++++..+.|++|++..+  ||.+++||....-            ....+||.|+.+ -.-.
T Consensus        83 sGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~------------~~~aPyD~I~Vtaaa~~  150 (209)
T COG2518          83 SGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW------------PEEAPYDRIIVTAAAPE  150 (209)
T ss_pred             chHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC------------CCCCCcCEEEEeeccCC
Confidence            999999999998899999999999999999998765  8999999998864            355789999876 4446


Q ss_pred             CcHHHHHHhccCCCcee
Q 023240          229 ISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       229 ~~~~i~~~l~~~g~~~~  245 (285)
                      .+..+++||.++|.++.
T Consensus       151 vP~~Ll~QL~~gGrlv~  167 (209)
T COG2518         151 VPEALLDQLKPGGRLVI  167 (209)
T ss_pred             CCHHHHHhcccCCEEEE
Confidence            67888999999888773

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.64  E-value=2.9e-15  Score=129.65  Aligned_cols=146  Identities=21%  Similarity=0.348  Sum_probs=107.6

Q ss_pred             HHHHHHHHhcCCC-chHHHHHHHHhCC---CCCcc-------------ccCCcccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 023240           87 ASACIVCARSQDD-DYHATIKALNSKG---RFPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG  149 (285)
Q Consensus        87 r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~~-------------~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiG  149 (285)
                      ++.|++++++... ...++.+.+...+   +-+..             ..+ ..++.|.+...|++.+.++++.+|||||
T Consensus         2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~-~~is~P~~~a~~l~~L~l~pg~~VLeIG   80 (209)
T PF01135_consen    2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCG-QTISAPSMVARMLEALDLKPGDRVLEIG   80 (209)
T ss_dssp             HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETT-EEE--HHHHHHHHHHTTC-TT-EEEEES
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecce-eechHHHHHHHHHHHHhcCCCCEEEEec
Confidence            5789999998885 6777777765532   21211             123 3778899999999999999999999999


Q ss_pred             CcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240          150 PGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       150 cG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                      ||+||.+..++.. +  ..|++||+++..++.|+++++..+  |++++++|.....            ....+||.|+.+
T Consensus        81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~------------~~~apfD~I~v~  148 (209)
T PF01135_consen   81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW------------PEEAPFDRIIVT  148 (209)
T ss_dssp             -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT------------GGG-SEEEEEES
T ss_pred             CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc------------ccCCCcCEEEEe
Confidence            9999999999987 3  479999999999999999998654  8999999987653            344679999997


Q ss_pred             CCC-CCcHHHHHHhccCCCcee
Q 023240          225 IPF-NISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       225 ~P~-~~~~~i~~~l~~~g~~~~  245 (285)
                      ... ..+..++++|.++|.++.
T Consensus       149 ~a~~~ip~~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  149 AAVPEIPEALLEQLKPGGRLVA  170 (209)
T ss_dssp             SBBSS--HHHHHTEEEEEEEEE
T ss_pred             eccchHHHHHHHhcCCCcEEEE
Confidence            543 556778888887777664

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.63  E-value=1.2e-14  Score=126.44  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHhcCCC-chHHHHHHHHhCCC---CCc-----------ccc-CCcccCCHHHHHHHHHHhcCCCCCEEEE
Q 023240           84 KGAASACIVCARSQDD-DYHATIKALNSKGR---FPR-----------KSL-GQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (285)
Q Consensus        84 ~~~r~~mv~~q~~~~~-~~~~~~~~~~~~~~---~~~-----------~~~-g~~~~~~~~~~~~l~~~l~~~~~~~VLD  147 (285)
                      ...+..|++++++.+. ....+.+.+...+.   -+.           ..+ ..+.+..+.....+++.+.+.++.+|||
T Consensus         4 ~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLD   83 (215)
T TIGR00080         4 ESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLE   83 (215)
T ss_pred             hHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEE
Confidence            3457889999998885 56666666654321   111           011 1235677888999999999999999999


Q ss_pred             EcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240          148 IGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (285)
Q Consensus       148 iGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv  222 (285)
                      ||||+|+++..+++..   .+|+++|+++++++.|+++++..+  +++++++|+.+..            .....||+|+
T Consensus        84 iG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~------------~~~~~fD~Ii  151 (215)
T TIGR00080        84 IGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW------------EPLAPYDRIY  151 (215)
T ss_pred             ECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC------------cccCCCCEEE
Confidence            9999999999999873   369999999999999999988664  8999999998753            2346799999


Q ss_pred             EcCCC-CCcHHHHHHhccCCCce
Q 023240          223 ANIPF-NISTDVIKQLLPMGDIF  244 (285)
Q Consensus       223 ~n~P~-~~~~~i~~~l~~~g~~~  244 (285)
                      .+.+. +....+.++|.++|.++
T Consensus       152 ~~~~~~~~~~~~~~~L~~gG~lv  174 (215)
T TIGR00080       152 VTAAGPKIPEALIDQLKEGGILV  174 (215)
T ss_pred             EcCCcccccHHHHHhcCcCcEEE
Confidence            88654 45555556665555544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.63  E-value=1.7e-14  Score=125.37  Aligned_cols=146  Identities=18%  Similarity=0.225  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhcCCC-chHHHHHHHHhCC---CCCc-------------cccCCcccCCHHHHHHHHHHhcCCCCCEEEEE
Q 023240           86 AASACIVCARSQDD-DYHATIKALNSKG---RFPR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (285)
Q Consensus        86 ~r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~-------------~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDi  148 (285)
                      .++.|+++|++.+. ....+.+.+....   +-+.             ...|+ .++.+.+...+++.+.+.++.+||||
T Consensus         5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdI   83 (212)
T PRK13942          5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEI   83 (212)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEE
Confidence            34789999999996 6677777665432   1111             12244 67889999999999999999999999


Q ss_pred             cCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEE
Q 023240          149 GPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       149 GcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                      |||+|+++..+++.   +++|+++|+++++++.|+++++..+  +++++++|+.+..            .....||+|++
T Consensus        84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~------------~~~~~fD~I~~  151 (212)
T PRK13942         84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY------------EENAPYDRIYV  151 (212)
T ss_pred             CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC------------CcCCCcCEEEE
Confidence            99999999999876   3699999999999999999987653  8999999998754            23467999988


Q ss_pred             cCCC-CCcHHHHHHhccCCCce
Q 023240          224 NIPF-NISTDVIKQLLPMGDIF  244 (285)
Q Consensus       224 n~P~-~~~~~i~~~l~~~g~~~  244 (285)
                      +-.. .....+.++|.++|.++
T Consensus       152 ~~~~~~~~~~l~~~LkpgG~lv  173 (212)
T PRK13942        152 TAAGPDIPKPLIEQLKDGGIMV  173 (212)
T ss_pred             CCCcccchHHHHHhhCCCcEEE
Confidence            7443 34455666666666544

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=1.5e-14  Score=120.93  Aligned_cols=132  Identities=21%  Similarity=0.327  Sum_probs=105.6

Q ss_pred             CCCccccCCcccCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC-C
Q 023240          113 RFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-D  187 (285)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~-~  187 (285)
                      .+++.++.| |.++..++..++.....   -.+.+|+|+|||||.+++..+..| ..|+|+|+|+++++.+++|.++. +
T Consensus        15 ~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g   93 (198)
T COG2263          15 PNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLG   93 (198)
T ss_pred             CCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCC
Confidence            467778888 99999999888877643   357789999999999999999887 58999999999999999999865 4


Q ss_pred             CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc-----HHHHHHhccCCCceeeeEeeehHhHHHHhc
Q 023240          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-----TDVIKQLLPMGDIFSEVVLLLQEETALRLV  260 (285)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~-----~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~  260 (285)
                      ++.++++|+.+..               +.+|.+|+||||...     .+++...++.+..+..++..-..++..+..
T Consensus        94 ~v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~  156 (198)
T COG2263          94 DVEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFA  156 (198)
T ss_pred             ceEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHH
Confidence            8999999999875               668899999999654     466666667666666666554445544444

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.60  E-value=4.4e-14  Score=122.08  Aligned_cols=145  Identities=15%  Similarity=0.158  Sum_probs=107.1

Q ss_pred             HHHHHHHHhcCCC-chHHHHHHHHhCC---CCCc-------------cccCCcccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 023240           87 ASACIVCARSQDD-DYHATIKALNSKG---RFPR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG  149 (285)
Q Consensus        87 r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~-------------~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiG  149 (285)
                      |..|++++.+.+. ...++.+.+...+   +-+.             ...++ .+..+.....+++.+.+.++.+|||+|
T Consensus         2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG   80 (205)
T PRK13944          2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGA-TISAPHMVAMMCELIEPRPGMKILEVG   80 (205)
T ss_pred             HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCC-EechHHHHHHHHHhcCCCCCCEEEEEC
Confidence            5678888887775 5566666654432   1111             11233 566688889999999988889999999


Q ss_pred             CcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEE
Q 023240          150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       150 cG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                      ||+|+.+..+++.   +++|+++|+++++++.|++++...+   +++++++|+.+..            ...+.||.|++
T Consensus        81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~------------~~~~~fD~Ii~  148 (205)
T PRK13944         81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL------------EKHAPFDAIIV  148 (205)
T ss_pred             cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC------------ccCCCccEEEE
Confidence            9999999998875   3699999999999999999987653   5899999998753            23367999999


Q ss_pred             cCCC-CCcHHHHHHhccCCCce
Q 023240          224 NIPF-NISTDVIKQLLPMGDIF  244 (285)
Q Consensus       224 n~P~-~~~~~i~~~l~~~g~~~  244 (285)
                      +... +.+..+.++|.++|.++
T Consensus       149 ~~~~~~~~~~l~~~L~~gG~lv  170 (205)
T PRK13944        149 TAAASTIPSALVRQLKDGGVLV  170 (205)
T ss_pred             ccCcchhhHHHHHhcCcCcEEE
Confidence            8664 44455556666655544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.55  E-value=2.3e-13  Score=118.03  Aligned_cols=148  Identities=16%  Similarity=0.216  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhcCCC-chHHHHHHHHhCCCC---Ccc----cc--------CCcccCCHHHHHHHHHHhcCCCCCEEEE
Q 023240           84 KGAASACIVCARSQDD-DYHATIKALNSKGRF---PRK----SL--------GQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (285)
Q Consensus        84 ~~~r~~mv~~q~~~~~-~~~~~~~~~~~~~~~---~~~----~~--------g~~~~~~~~~~~~l~~~l~~~~~~~VLD  147 (285)
                      ...|.+|++ |++.+. ....+.+.+......   +..    .|        ...++..+.....+++.+.+.++.+|||
T Consensus         6 ~~~~~~~v~-~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLe   84 (212)
T PRK00312          6 SERFARLVL-RLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLE   84 (212)
T ss_pred             HHHHHHHHH-HHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEE
Confidence            357889999 777776 556666666543211   111    01        1225678999999999999988999999


Q ss_pred             EcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          148 IGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       148 iGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      +|||+|+++..++....+|+++|+++.+++.|+++++..+  +++++.+|+.+..            ...+.||+|+++.
T Consensus        85 iG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~~~~fD~I~~~~  152 (212)
T PRK00312         85 IGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW------------PAYAPFDRILVTA  152 (212)
T ss_pred             ECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC------------CcCCCcCEEEEcc
Confidence            9999999999888877799999999999999999987653  7999999986532            2336799999986


Q ss_pred             CCCCcH-HHHHHhccCCCce
Q 023240          226 PFNIST-DVIKQLLPMGDIF  244 (285)
Q Consensus       226 P~~~~~-~i~~~l~~~g~~~  244 (285)
                      +..... .+...|.++|.++
T Consensus       153 ~~~~~~~~l~~~L~~gG~lv  172 (212)
T PRK00312        153 AAPEIPRALLEQLKEGGILV  172 (212)
T ss_pred             CchhhhHHHHHhcCCCcEEE
Confidence            654444 4444454444433

>PHA03412 putative methyltransferase; Provisional

Probab=99.51  E-value=1.2e-13  Score=120.60  Aligned_cols=108  Identities=14%  Similarity=0.258  Sum_probs=84.8

Q ss_pred             HHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-----CCEEEEEeCCHHHHHH
Q 023240          104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGL  178 (285)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-----~~~V~giD~~~~~v~~  178 (285)
                      +.+.+.+.....++..|+ |++++.+++.++...  ..+.+|||+|||+|.+++.+++.     ..+|+++|+++.+++.
T Consensus        15 ~~~n~~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~   91 (241)
T PHA03412         15 IIENFHEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL   91 (241)
T ss_pred             HHhhcccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence            334444444555666788 999999988876442  24679999999999999998864     3589999999999999


Q ss_pred             HHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       179 a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      |+++..   ++.++.+|+...++             ..+||+||+||||...
T Consensus        92 Ar~n~~---~~~~~~~D~~~~~~-------------~~~FDlIIsNPPY~~~  127 (241)
T PHA03412         92 GKRIVP---EATWINADALTTEF-------------DTLFDMAISNPPFGKI  127 (241)
T ss_pred             HHhhcc---CCEEEEcchhcccc-------------cCCccEEEECCCCCCc
Confidence            998863   68999999987542             3579999999999753

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.46  E-value=4.2e-13  Score=112.58  Aligned_cols=89  Identities=22%  Similarity=0.397  Sum_probs=70.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~--~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~  205 (285)
                      ...+++.+...++.+|||+|||+|.+++.+++...  +|+++|+++.+++.+++|++.++  +++++.+|..+.      
T Consensus        20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~------   93 (170)
T PF05175_consen   20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA------   93 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT------
T ss_pred             HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc------
Confidence            34555555554678999999999999999999843  69999999999999999998774  499999998774      


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNIST  231 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~~~  231 (285)
                             .....||+|++|||++...
T Consensus        94 -------~~~~~fD~Iv~NPP~~~~~  112 (170)
T PF05175_consen   94 -------LPDGKFDLIVSNPPFHAGG  112 (170)
T ss_dssp             -------CCTTCEEEEEE---SBTTS
T ss_pred             -------ccccceeEEEEccchhccc
Confidence                   2357899999999986553

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.45  E-value=5e-13  Score=103.52  Aligned_cols=73  Identities=30%  Similarity=0.440  Sum_probs=61.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~--~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      |+.+|||||||+|.++..+++  .+.+|+|+|+|+++++.|++++..   .++++++++|+ ....           ...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-----------~~~   68 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-----------DFL   68 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-----------TTS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-----------ccC
Confidence            468999999999999999999  588999999999999999999932   25999999999 3221           234


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      ..||+|+++.
T Consensus        69 ~~~D~v~~~~   78 (112)
T PF12847_consen   69 EPFDLVICSG   78 (112)
T ss_dssp             SCEEEEEECS
T ss_pred             CCCCEEEECC
Confidence            6699999987

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.44  E-value=3e-13  Score=118.92  Aligned_cols=88  Identities=22%  Similarity=0.356  Sum_probs=73.2

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhh
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d  207 (285)
                      +..+.......+|||+|||+|.+++.+|++ . +++++||+++++.+.|+++++.++   +++++++|+.++...     
T Consensus        36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-----  110 (248)
T COG4123          36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-----  110 (248)
T ss_pred             HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-----
Confidence            334445555789999999999999999988 4 799999999999999999998763   999999999987642     


Q ss_pred             HHhhhcCCCCceEEEEcCCCCCc
Q 023240          208 LFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                           ....+||+||+||||...
T Consensus       111 -----~~~~~fD~Ii~NPPyf~~  128 (248)
T COG4123         111 -----LVFASFDLIICNPPYFKQ  128 (248)
T ss_pred             -----ccccccCEEEeCCCCCCC
Confidence                 234569999999999644

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.9e-13  Score=122.53  Aligned_cols=91  Identities=22%  Similarity=0.330  Sum_probs=74.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~  205 (285)
                      .+.+++.+....+.+|||+|||.|.+++.+++.  ..+++-+|+|..+++.|++|++.++  +..+..+|..+-      
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------  220 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------  220 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------
Confidence            567788888777779999999999999999998  4699999999999999999998763  446777777653      


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCCcHHHH
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNISTDVI  234 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~  234 (285)
                              -.++||.||+||||+....+.
T Consensus       221 --------v~~kfd~IisNPPfh~G~~v~  241 (300)
T COG2813         221 --------VEGKFDLIISNPPFHAGKAVV  241 (300)
T ss_pred             --------ccccccEEEeCCCccCCcchh
Confidence                    234899999999998665433

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.42  E-value=2.3e-13  Score=127.37  Aligned_cols=89  Identities=16%  Similarity=0.201  Sum_probs=73.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEcccccccc
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHI  201 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD~~~~~~  201 (285)
                      -.+.+++.+....+.+|||+|||+|.+++.+++.  +.+|+++|+|+.+++.|++|++.+.     +++++.+|+.+.  
T Consensus       216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--  293 (378)
T PRK15001        216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--  293 (378)
T ss_pred             HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence            3566788887655679999999999999999987  5799999999999999999987552     678888888653  


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                                 ....+||+|++||||+..
T Consensus       294 -----------~~~~~fDlIlsNPPfh~~  311 (378)
T PRK15001        294 -----------VEPFRFNAVLCNPPFHQQ  311 (378)
T ss_pred             -----------CCCCCEEEEEECcCcccC
Confidence                       223579999999999754

>PRK14967 putative methyltransferase; Provisional

Probab=99.41  E-value=2.8e-12  Score=112.13  Aligned_cols=92  Identities=24%  Similarity=0.337  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchh
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~  203 (285)
                      +..++..++..+...++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++|+..++ +++++++|+.+.    
T Consensus        21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~----   96 (223)
T PRK14967         21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA----   96 (223)
T ss_pred             cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh----
Confidence            344555555555666788999999999999999988765 99999999999999999987554 688899998763    


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                               .....||+|++||||...
T Consensus        97 ---------~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         97 ---------VEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             ---------ccCCCeeEEEECCCCCCC
Confidence                     234679999999998753

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.40  E-value=2.3e-12  Score=123.66  Aligned_cols=105  Identities=22%  Similarity=0.229  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~  204 (285)
                      +.+++.+++.+...++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|++|++.++  +++++.+|+.+....  
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~--  360 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD--  360 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh--
Confidence            5566677777777778899999999999999999988899999999999999999987653  799999999764210  


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhcc
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~  239 (285)
                         ..   .....||+|++|||+....++++++..
T Consensus       361 ---~~---~~~~~fD~Vi~dPPr~g~~~~~~~l~~  389 (443)
T PRK13168        361 ---QP---WALGGFDKVLLDPPRAGAAEVMQALAK  389 (443)
T ss_pred             ---hh---hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence               00   123569999999999888888877764

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.40  E-value=3.2e-12  Score=112.27  Aligned_cols=87  Identities=18%  Similarity=0.329  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~  201 (285)
                      +..+.+.+++.+...+|.+|||+|||||..+..+++..  ++|+|+|+|+.|++.|+++....+  +++++++||+++|+
T Consensus        36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf  115 (238)
T COG2226          36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF  115 (238)
T ss_pred             hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence            45566777777777789999999999999999999984  799999999999999999988643  59999999999997


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEc
Q 023240          202 RSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                      +|            .+||+|.+.
T Consensus       116 ~D------------~sFD~vt~~  126 (238)
T COG2226         116 PD------------NSFDAVTIS  126 (238)
T ss_pred             CC------------CccCEEEee
Confidence            54            667777664

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.39  E-value=4.5e-12  Score=106.99  Aligned_cols=85  Identities=28%  Similarity=0.309  Sum_probs=70.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHH
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ..+.+.+...++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++..++ +++++.+|+.+..         
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---------   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---------   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---------
Confidence            344455555567899999999999999999987799999999999999999987654 7888999987642         


Q ss_pred             hhhcCCCCceEEEEcCCCCC
Q 023240          210 ERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~~  229 (285)
                           .++||+|++||||..
T Consensus        80 -----~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        80 -----RGKFDVILFNPPYLP   94 (179)
T ss_pred             -----CCcccEEEECCCCCC
Confidence                 247999999999963

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.39  E-value=1.3e-12  Score=102.07  Aligned_cols=79  Identities=28%  Similarity=0.407  Sum_probs=65.9

Q ss_pred             CCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      |.+|||+|||+|.++..+++.+ .+++|+|+++..++.|+.++...   ++++++++|+.+....          ...++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------~~~~~   70 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------LPDGK   70 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------CTTT-
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------ccCce
Confidence            4689999999999999999987 89999999999999999998865   3799999999887511          34588


Q ss_pred             ceEEEEcCCCCCc
Q 023240          218 FAKVVANIPFNIS  230 (285)
Q Consensus       218 ~D~Vv~n~P~~~~  230 (285)
                      ||+|++||||...
T Consensus        71 ~D~Iv~npP~~~~   83 (117)
T PF13659_consen   71 FDLIVTNPPYGPR   83 (117)
T ss_dssp             EEEEEE--STTSB
T ss_pred             eEEEEECCCCccc
Confidence            9999999999753

...

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.39  E-value=1.9e-12  Score=119.06  Aligned_cols=102  Identities=11%  Similarity=0.062  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~  204 (285)
                      +.+.+.+.+++...++.+|||+|||+|.+++.++..+.+|+|+|+++.+++.|+++++.++  +++++++|+.++..   
T Consensus       159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~---  235 (315)
T PRK03522        159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT---  235 (315)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH---
Confidence            3444444555554457899999999999999999988999999999999999999987664  79999999987642   


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCCc-HHHHHHhcc
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLLP  239 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~  239 (285)
                              .....||+|+.|||+... ..+++.|..
T Consensus       236 --------~~~~~~D~Vv~dPPr~G~~~~~~~~l~~  263 (315)
T PRK03522        236 --------AQGEVPDLVLVNPPRRGIGKELCDYLSQ  263 (315)
T ss_pred             --------hcCCCCeEEEECCCCCCccHHHHHHHHH
Confidence                    122469999999998754 455555544

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.39  E-value=5e-12  Score=108.70  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccc
Q 023240          126 NSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (285)
Q Consensus       126 ~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~  201 (285)
                      ...+.+.++..+.. .++.+|||+|||+|.+++.++.. ..+|+++|+++++++.+++|++.++  +++++++|+.+...
T Consensus        37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~  116 (199)
T PRK10909         37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA  116 (199)
T ss_pred             CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh
Confidence            34555556665532 45789999999999999865544 5699999999999999999987654  79999999876421


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhcc
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLP  239 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~~  239 (285)
                                 .....||+|++||||...  ..++..|..
T Consensus       117 -----------~~~~~fDlV~~DPPy~~g~~~~~l~~l~~  145 (199)
T PRK10909        117 -----------QPGTPHNVVFVDPPFRKGLLEETINLLED  145 (199)
T ss_pred             -----------hcCCCceEEEECCCCCCChHHHHHHHHHH
Confidence                       123469999999997543  344555544

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.38  E-value=3.7e-12  Score=117.79  Aligned_cols=95  Identities=24%  Similarity=0.267  Sum_probs=83.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~  200 (285)
                      -...+.++..|+....+.++.+|||+|||+|.+++.++..+.+++|+|+++.|++.|+.|++.++  +++++++|+.+++
T Consensus       164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~  243 (329)
T TIGR01177       164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP  243 (329)
T ss_pred             CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence            55678888899988888889999999999999998888779999999999999999999987653  6889999999886


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      .            ....||.|++||||..
T Consensus       244 ~------------~~~~~D~Iv~dPPyg~  260 (329)
T TIGR01177       244 L------------SSESVDAIATDPPYGR  260 (329)
T ss_pred             c------------ccCCCCEEEECCCCcC
Confidence            4            3467999999999965

This family is found exclusively in the Archaea.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2.7e-12  Score=115.97  Aligned_cols=74  Identities=26%  Similarity=0.456  Sum_probs=62.2

Q ss_pred             EEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          144 IVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      +|||+|||+|.+++.++...  .+|+|+|+|+.+++.|++|+..++  ++.++.+|..+-              ..++||
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--------------~~~~fD  178 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--------------LRGKFD  178 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------cCCcee
Confidence            79999999999999999884  499999999999999999998764  566666676553              235899


Q ss_pred             EEEEcCCCCCcH
Q 023240          220 KVVANIPFNIST  231 (285)
Q Consensus       220 ~Vv~n~P~~~~~  231 (285)
                      +||+||||-..+
T Consensus       179 lIVsNPPYip~~  190 (280)
T COG2890         179 LIVSNPPYIPAE  190 (280)
T ss_pred             EEEeCCCCCCCc
Confidence            999999995544

>PHA03411 putative methyltransferase; Provisional

Probab=99.37  E-value=3.5e-12  Score=113.78  Aligned_cols=93  Identities=16%  Similarity=0.305  Sum_probs=76.2

Q ss_pred             cCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccc
Q 023240          119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF  196 (285)
Q Consensus       119 ~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~  196 (285)
                      .|+ |.+++.++..++.  ....+.+|||+|||+|.+++.++..  +.+|+++|+++.+++.+++++   ++++++++|+
T Consensus        45 ~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~  118 (279)
T PHA03411         45 SGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDV  118 (279)
T ss_pred             cee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECch
Confidence            466 9999999866542  3334579999999999999988775  469999999999999999875   4789999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .+..             ....||+||+||||...
T Consensus       119 ~e~~-------------~~~kFDlIIsNPPF~~l  139 (279)
T PHA03411        119 FEFE-------------SNEKFDVVISNPPFGKI  139 (279)
T ss_pred             hhhc-------------ccCCCcEEEEcCCcccc
Confidence            8763             23579999999999753

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.36  E-value=1.2e-11  Score=110.85  Aligned_cols=132  Identities=16%  Similarity=0.268  Sum_probs=88.2

Q ss_pred             cccchHHHHHHHHHHHhcCCCchHHHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHH
Q 023240           79 IAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV  158 (285)
Q Consensus        79 ~~~~~~~~r~~mv~~q~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~  158 (285)
                      +++.+...|...++++......+......++....  ...+|.    ...+.+.+++.+.+.++.+|||+|||+|.++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~--~~s~g~----~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~   90 (261)
T PLN02233         17 LAGNSRSRRRDVVKCANERQALFNRIAPVYDNLND--LLSLGQ----HRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFL   90 (261)
T ss_pred             ccccchhhcCChhhhHHHHHHHHHHhhhHHHHhhh--hhcCCh----hHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHH
Confidence            34555556666666654444444433333322100  001222    233444556667777889999999999999999


Q ss_pred             HHHh-C--CEEEEEeCCHHHHHHHHHHhhc-----CCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          159 LLNA-G--ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       159 la~~-~--~~V~giD~~~~~v~~a~~~~~~-----~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +++. +  ++|+|+|+|++|++.|+++...     .++++++++|+.++|+            +.++||.|+++..++
T Consensus        91 la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------------~~~sfD~V~~~~~l~  156 (261)
T PLN02233         91 LSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------------DDCYFDAITMGYGLR  156 (261)
T ss_pred             HHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------------CCCCEeEEEEecccc
Confidence            8875 3  5999999999999999877531     2489999999999875            346799999875544

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.35  E-value=5.6e-12  Score=114.24  Aligned_cols=80  Identities=15%  Similarity=0.247  Sum_probs=66.2

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhh
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +...++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|++|+..++   +++++++|+.+.            
T Consensus       117 ~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~------------  184 (284)
T TIGR03533       117 LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA------------  184 (284)
T ss_pred             hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc------------
Confidence            33344679999999999999999986  5799999999999999999988653   699999998653            


Q ss_pred             hcCCCCceEEEEcCCCCC
Q 023240          212 RKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~  229 (285)
                       .....||+|++||||..
T Consensus       185 -~~~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       185 -LPGRKYDLIVSNPPYVD  201 (284)
T ss_pred             -cCCCCccEEEECCCCCC
Confidence             12347999999999953

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.33  E-value=7.8e-12  Score=117.64  Aligned_cols=89  Identities=17%  Similarity=0.283  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~  205 (285)
                      +++.++..+  .++.+|||+|||+|.+++.++..  +.+|+|+|+|+++++.|++|++.++ +++++++|+.+...    
T Consensus       241 LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l----  314 (423)
T PRK14966        241 LVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM----  314 (423)
T ss_pred             HHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc----
Confidence            344444433  34569999999999999998875  6799999999999999999987665 79999999876432    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                             ...++||+|++||||...
T Consensus       315 -------~~~~~FDLIVSNPPYI~~  332 (423)
T PRK14966        315 -------PSEGKWDIIVSNPPYIEN  332 (423)
T ss_pred             -------ccCCCccEEEECCCCCCc
Confidence                   123579999999999543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.33  E-value=4.9e-12  Score=111.40  Aligned_cols=87  Identities=20%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~  201 (285)
                      ..+.+.+++.+...++.+|||+|||||.++..+++.   .++|+|+|+++.|++.|+++....  .+|+++++|+.++|+
T Consensus        33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~  112 (233)
T PF01209_consen   33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF  112 (233)
T ss_dssp             ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence            444556666777778999999999999999999876   369999999999999999998764  389999999999996


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcC
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      +            .++||.|++..
T Consensus       113 ~------------d~sfD~v~~~f  124 (233)
T PF01209_consen  113 P------------DNSFDAVTCSF  124 (233)
T ss_dssp             -------------TT-EEEEEEES
T ss_pred             C------------CCceeEEEHHh
Confidence            3            47789998753

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.33  E-value=1.8e-11  Score=115.13  Aligned_cols=106  Identities=14%  Similarity=0.093  Sum_probs=80.5

Q ss_pred             ccCCHHHHHHHH----HHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccc
Q 023240          123 YMLNSEINDQLA----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~----~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~  196 (285)
                      +.++..+.+.+.    .++...++.+|||+|||+|.+++.++..+.+|+|||+++.+++.|++|++.++  +++++.+|+
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~  290 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS  290 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence            445555555544    34443456799999999999999999888899999999999999999997664  899999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc-HHHHHHhcc
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLLP  239 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~  239 (285)
                      .+...           .....||+||.|||+... ..+++.+..
T Consensus       291 ~~~~~-----------~~~~~~D~vi~DPPr~G~~~~~l~~l~~  323 (374)
T TIGR02085       291 AKFAT-----------AQMSAPELVLVNPPRRGIGKELCDYLSQ  323 (374)
T ss_pred             HHHHH-----------hcCCCCCEEEECCCCCCCcHHHHHHHHh
Confidence            76531           112458999999999743 455565543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.33  E-value=2.9e-11  Score=101.55  Aligned_cols=110  Identities=25%  Similarity=0.332  Sum_probs=89.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~  198 (285)
                      +++.+++....+..|.+.++++++|||||||.++..++..  .++|++||.++++++..++|.++.  +|++++.||+-+
T Consensus        16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~   95 (187)
T COG2242          16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE   95 (187)
T ss_pred             CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence            6899999999999999999999999999999999999954  579999999999999999999876  499999999987


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH----HhccCCCcee
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK----QLLPMGDIFS  245 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~----~l~~~g~~~~  245 (285)
                      .-            .+...+|.||.+=- ...+.+++    +|.++|+++-
T Consensus        96 ~L------------~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~  133 (187)
T COG2242          96 AL------------PDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVA  133 (187)
T ss_pred             hh------------cCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEE
Confidence            63            23347899988755 44455554    4445555553

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.32  E-value=1.4e-11  Score=114.26  Aligned_cols=86  Identities=19%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~  206 (285)
                      .+.+++.+......+|||+|||+|.++..+++.  +.+|+++|+++.+++.|+++++.++ ..+++.+|+.+.       
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-------  257 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-------  257 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-------
Confidence            355666665555568999999999999999987  3599999999999999999988764 556777777542       


Q ss_pred             hHHhhhcCCCCceEEEEcCCCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                             ..+.||+||+||||+.
T Consensus       258 -------~~~~fDlIvsNPPFH~  273 (342)
T PRK09489        258 -------IKGRFDMIISNPPFHD  273 (342)
T ss_pred             -------cCCCccEEEECCCccC
Confidence                   2367999999999975

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.32  E-value=3.8e-11  Score=94.22  Aligned_cols=109  Identities=17%  Similarity=0.267  Sum_probs=80.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~  200 (285)
                      ...++...+++.+.+.++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++++..  ++++++.+|+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   82 (124)
T TIGR02469         3 TKREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL   82 (124)
T ss_pred             chHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence            34566777888888777889999999999999999986  469999999999999999988754  47899999987532


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      .           .....||.|++..+......+++   +++.+++.+
T Consensus        83 ~-----------~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l  118 (124)
T TIGR02469        83 E-----------DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRI  118 (124)
T ss_pred             h-----------hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEE
Confidence            1           12357999998765544333332   334444443

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.32  E-value=3.5e-11  Score=102.24  Aligned_cols=110  Identities=15%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccc
Q 023240          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF  196 (285)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~  196 (285)
                      +.+++.+.+...++..+.+.++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++++...  ++++++.+|+
T Consensus        11 ~~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~   90 (187)
T PRK08287         11 KVPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA   90 (187)
T ss_pred             CCCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence            457778888888889998888899999999999999999886  469999999999999999988755  3789999987


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      .. +             ....||+|+++........+++   +++..++.+
T Consensus        91 ~~-~-------------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l  127 (187)
T PRK08287         91 PI-E-------------LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRL  127 (187)
T ss_pred             hh-h-------------cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEE
Confidence            42 1             1256899998765443344332   334444444

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.31  E-value=9.4e-12  Score=106.29  Aligned_cols=177  Identities=22%  Similarity=0.391  Sum_probs=138.4

Q ss_pred             HHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhh
Q 023240          106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFA  184 (285)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~  184 (285)
                      ++..-+.+++++-+.|||.++..+.+.++.........-|.|||.|.|.++..+...+ .++..+|.+..++.-.+...+
T Consensus        15 e~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~E   94 (326)
T KOG0821|consen   15 EIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSE   94 (326)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhh
Confidence            3333345677778999999999999999999988778899999999999999999885 478889999999888777666


Q ss_pred             cCC-CeEEEEcccccccchhhhhhHHhhh-cCCCCceEEEEcCCCCCcHHHHHHhcc----CCCce----eeeEeeehHh
Q 023240          185 SID-QLKVLQEDFVKCHIRSHMLSLFERR-KSSSGFAKVVANIPFNISTDVIKQLLP----MGDIF----SEVVLLLQEE  254 (285)
Q Consensus       185 ~~~-~v~~~~gD~~~~~~~~~~~d~~~~~-~~~~~~D~Vv~n~P~~~~~~i~~~l~~----~g~~~----~~~~~~~~~~  254 (285)
                      ..+ +..++++|++.....+...+-.... .+....-.||+|+||++.++++-+++.    ..+.|    ..+...++.+
T Consensus        95 Aa~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~E  174 (326)
T KOG0821|consen   95 AAPGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKE  174 (326)
T ss_pred             cCCcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHH
Confidence            554 8899999998877654433222211 223445679999999999998755443    22333    3677899999


Q ss_pred             HHHHhcCCCCCCCCchhHHHHHHHhhccc
Q 023240          255 TALRLVEPSLRTSEYRPINIFVNFYSGQF  283 (285)
Q Consensus       255 ~~~rl~~~~~~~~~y~~l~~~~~~f~~~~  283 (285)
                      .++||+ +.-+++.-.++|+|-|+.|++.
T Consensus       175 VAeRlC-aP~~~~qRsRlSvMSQy~~EP~  202 (326)
T KOG0821|consen  175 VAERLC-APTGSKQRSRLSVMSQYLCEPR  202 (326)
T ss_pred             HHHHhc-ccccccchhhHHHHHHHhcCce
Confidence            999999 7778899999999999999973

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.31  E-value=2.6e-11  Score=106.19  Aligned_cols=92  Identities=14%  Similarity=0.261  Sum_probs=76.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~  200 (285)
                      .......++..+.+.++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.|+++....  ++++++++|+.+.+
T Consensus        30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  109 (231)
T TIGR02752        30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP  109 (231)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence            4555677888888888899999999999999999875   369999999999999999988644  48999999998876


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +            ..++||+|+++..++.
T Consensus       110 ~------------~~~~fD~V~~~~~l~~  126 (231)
T TIGR02752       110 F------------DDNSFDYVTIGFGLRN  126 (231)
T ss_pred             C------------CCCCccEEEEeccccc
Confidence            3            3467999998766543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.31  E-value=2.8e-11  Score=103.92  Aligned_cols=84  Identities=17%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHh
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      +++.+...++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+  +++++++|+.+.++         
T Consensus        22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---------   92 (197)
T PRK11207         22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---------   92 (197)
T ss_pred             HHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---------
Confidence            3444455567899999999999999999999999999999999999998876543  68889999877642         


Q ss_pred             hhcCCCCceEEEEcCCCCC
Q 023240          211 RRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~~  229 (285)
                          .+.||+|+++..++.
T Consensus        93 ----~~~fD~I~~~~~~~~  107 (197)
T PRK11207         93 ----DGEYDFILSTVVLMF  107 (197)
T ss_pred             ----CCCcCEEEEecchhh
Confidence                256999999877543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.31  E-value=2.6e-11  Score=103.98  Aligned_cols=86  Identities=17%  Similarity=0.178  Sum_probs=68.1

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      .+++.+...++.+|||+|||+|..+..+++.+.+|+|+|+++.|++.++++....+ ++++..+|+...++         
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~---------   91 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL---------   91 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc---------
Confidence            44455555567899999999999999999999999999999999999998876543 56777777765432         


Q ss_pred             hhcCCCCceEEEEcCCCCCc
Q 023240          211 RRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~~~  230 (285)
                          .+.||+|+++.+++..
T Consensus        92 ----~~~fD~I~~~~~~~~~  107 (195)
T TIGR00477        92 ----NEDYDFIFSTVVFMFL  107 (195)
T ss_pred             ----cCCCCEEEEecccccC
Confidence                2569999999887543

Part of a tellurite-reducing operon tehA and tehB

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.30  E-value=2.3e-11  Score=109.10  Aligned_cols=96  Identities=20%  Similarity=0.362  Sum_probs=80.0

Q ss_pred             ccCCcccCCH--HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEc
Q 023240          118 SLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQE  194 (285)
Q Consensus       118 ~~g~~~~~~~--~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~g  194 (285)
                      .||..+..+-  +....++..+.+.++.+|||||||+|..+..++.. +++|+|+|+++.+++.|+++....++++++.+
T Consensus        27 ~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~  106 (263)
T PTZ00098         27 IFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEAN  106 (263)
T ss_pred             HhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEEC
Confidence            3666566653  55778888888889999999999999999998875 77999999999999999998765568999999


Q ss_pred             ccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      |+.+.++            +.++||+|+++.
T Consensus       107 D~~~~~~------------~~~~FD~V~s~~  125 (263)
T PTZ00098        107 DILKKDF------------PENTFDMIYSRD  125 (263)
T ss_pred             CcccCCC------------CCCCeEEEEEhh
Confidence            9987764            346899999964

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.30  E-value=2.8e-11  Score=107.48  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=81.3

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (285)
                      ...+...+++.+...++.+|||+|||+|.++..++..+.+|+++|+++.|++.|+++..   .+.++++|+.++++    
T Consensus        27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~----   99 (251)
T PRK10258         27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPL----   99 (251)
T ss_pred             HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcC----
Confidence            35566777787776667899999999999999998888999999999999999998753   45789999988764    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCCcH---HHH---HHhccCCCcee
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNIST---DVI---KQLLPMGDIFS  245 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~~~---~i~---~~l~~~g~~~~  245 (285)
                              ....||+|++|.++++..   .++   .+++.+|+.+.
T Consensus       100 --------~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~  137 (251)
T PRK10258        100 --------ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVA  137 (251)
T ss_pred             --------CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEE
Confidence                    346799999998876532   222   34455555554

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.29  E-value=4e-11  Score=102.13  Aligned_cols=91  Identities=22%  Similarity=0.291  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.+|||+|||+|..+..++..  +++|+++|.++.|++.|+++.+..+  +++++++|+.+.+            . .+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~------------~-~~  111 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG------------Q-EE  111 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC------------C-CC
Confidence            4789999999999999999874  6799999999999999999988664  6999999998864            2 46


Q ss_pred             CceEEEEcCCCCCcHHHH---HHhccCCCcee
Q 023240          217 GFAKVVANIPFNISTDVI---KQLLPMGDIFS  245 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~~  245 (285)
                      +||+|+++. +.....++   .+++.+|+.+.
T Consensus       112 ~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv  142 (187)
T PRK00107        112 KFDVVTSRA-VASLSDLVELCLPLLKPGGRFL  142 (187)
T ss_pred             CccEEEEcc-ccCHHHHHHHHHHhcCCCeEEE
Confidence            799999974 22222322   34445555554

>PRK14968 putative methyltransferase; Provisional

Probab=99.29  E-value=5.5e-11  Score=100.34  Aligned_cols=87  Identities=23%  Similarity=0.344  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--C--eEEEEcccccccchhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~--v~~~~gD~~~~~~~~~~  205 (285)
                      ...+++.+...++.+|||+|||+|.++..++..+.+|+++|+++++++.+++++..++  +  +.++++|+.+..     
T Consensus        12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----   86 (188)
T PRK14968         12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-----   86 (188)
T ss_pred             HHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-----
Confidence            4455555555678899999999999999999888999999999999999999886543  2  889999986632     


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                              ....||+|++|+||..
T Consensus        87 --------~~~~~d~vi~n~p~~~  102 (188)
T PRK14968         87 --------RGDKFDVILFNPPYLP  102 (188)
T ss_pred             --------cccCceEEEECCCcCC
Confidence                    2347999999999865

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=2.3e-11  Score=115.80  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=100.2

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKV  191 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~  191 (285)
                      .++.+|+-|....+.++...+++++..+++++||+.||.|.+++.+|....+|+|+|+++++++.|++|++.++  |+++
T Consensus       266 ~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f  345 (432)
T COG2265         266 SPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEF  345 (432)
T ss_pred             CCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEE
Confidence            34445555666667788888888888888999999999999999999989999999999999999999999875  8999


Q ss_pred             EEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH-HHHHHhccCCCc
Q 023240          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGDI  243 (285)
Q Consensus       192 ~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~-~i~~~l~~~g~~  243 (285)
                      +.+|+.++....         .....+|.||.+||..... ++++.+...+..
T Consensus       346 ~~~~ae~~~~~~---------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~  389 (432)
T COG2265         346 IAGDAEEFTPAW---------WEGYKPDVVVVDPPRAGADREVLKQLAKLKPK  389 (432)
T ss_pred             EeCCHHHHhhhc---------cccCCCCEEEECCCCCCCCHHHHHHHHhcCCC
Confidence            999999876421         2345789999999997776 788887766554

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.29  E-value=2e-11  Score=111.84  Aligned_cols=74  Identities=15%  Similarity=0.287  Sum_probs=63.5

Q ss_pred             CEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+|||+|||+|.++..++..  +.+|+++|+|+.+++.|++|++.++   +++++++|+.+.             .....
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-------------l~~~~  201 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-------------LPGRR  201 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-------------CCCCC
Confidence            68999999999999999986  5699999999999999999988653   699999998653             12357


Q ss_pred             ceEEEEcCCCCC
Q 023240          218 FAKVVANIPFNI  229 (285)
Q Consensus       218 ~D~Vv~n~P~~~  229 (285)
                      ||+|++||||..
T Consensus       202 fDlIvsNPPyi~  213 (307)
T PRK11805        202 YDLIVSNPPYVD  213 (307)
T ss_pred             ccEEEECCCCCC
Confidence            999999999954

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.28  E-value=2.6e-11  Score=99.52  Aligned_cols=78  Identities=21%  Similarity=0.393  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHH-h--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLN-A--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~-~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++.+|||+|||+|.++..++. .  +.+++|+|++++|++.|+++++..  ++++++++|+.+++.           .-.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~-----------~~~   71 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQ-----------ELE   71 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCG-----------CSS
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccc-----------ccC
Confidence            578999999999999999994 3  679999999999999999987754  489999999999651           101


Q ss_pred             CCceEEEEcCCCCC
Q 023240          216 SGFAKVVANIPFNI  229 (285)
Q Consensus       216 ~~~D~Vv~n~P~~~  229 (285)
                      ..||+|+++.+++.
T Consensus        72 ~~~D~I~~~~~l~~   85 (152)
T PF13847_consen   72 EKFDIIISNGVLHH   85 (152)
T ss_dssp             TTEEEEEEESTGGG
T ss_pred             CCeeEEEEcCchhh
Confidence            68999999987643

...

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.28  E-value=3.5e-11  Score=107.19  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240          127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       127 ~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (285)
                      +.+++.++..+... .+.+|||+|||+|.+++.++..  +.+|+++|+|+.+++.|++|++.++ ++++++|+.+.... 
T Consensus        71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~D~~~~l~~-  148 (251)
T TIGR03704        71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-GTVHEGDLYDALPT-  148 (251)
T ss_pred             HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CEEEEeechhhcch-
Confidence            44455555554422 3458999999999999999875  5699999999999999999987654 68899998763210 


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                               ...+.||+||+||||..
T Consensus       149 ---------~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704       149 ---------ALRGRVDILAANAPYVP  165 (251)
T ss_pred             ---------hcCCCEeEEEECCCCCC
Confidence                     11256999999999964

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.28  E-value=3.3e-11  Score=102.19  Aligned_cols=91  Identities=20%  Similarity=0.320  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.+|||+|||+|.++..++..  +.+|+|+|.++.+++.++++.+..+  +++++++|+.+++             ..+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-------------~~~  108 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-------------HEE  108 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-------------ccC
Confidence            4789999999999999998865  4689999999999999998887653  7999999998863             236


Q ss_pred             CceEEEEcCCCCCcHHHH---HHhccCCCcee
Q 023240          217 GFAKVVANIPFNISTDVI---KQLLPMGDIFS  245 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~~  245 (285)
                      .||+|+++. +.....++   .+++..|+.+.
T Consensus       109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lv  139 (181)
T TIGR00138       109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFL  139 (181)
T ss_pred             CccEEEehh-hhCHHHHHHHHHHhcCCCCEEE
Confidence            799999986 43333333   34555555543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.27  E-value=2.5e-11  Score=116.13  Aligned_cols=108  Identities=15%  Similarity=0.134  Sum_probs=83.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~  200 (285)
                      ....+.+...+.+.+.+.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|+..++  +++++.+|+.+..
T Consensus       274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l  353 (431)
T TIGR00479       274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL  353 (431)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence            33334556677777777777899999999999999999988899999999999999999987654  8999999997642


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCC-cHHHHHHhc
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL  238 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~-~~~i~~~l~  238 (285)
                      . .    +.   .....||+|+.|||+.. ...+++.+.
T Consensus       354 ~-~----~~---~~~~~~D~vi~dPPr~G~~~~~l~~l~  384 (431)
T TIGR00479       354 P-K----QP---WAGQIPDVLLLDPPRKGCAAEVLRTII  384 (431)
T ss_pred             H-H----HH---hcCCCCCEEEECcCCCCCCHHHHHHHH
Confidence            1 0    00   12346899999999865 566666554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.27  E-value=3.3e-11  Score=109.18  Aligned_cols=92  Identities=17%  Similarity=0.301  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhcCCCC-CEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240          127 SEINDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~-~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~  200 (285)
                      +.++..++..+....+ .+|||+|||+|.+++.++..  +.+|+|+|+++.+++.|++|+..++   +++++.+|+.+. 
T Consensus        99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-  177 (284)
T TIGR00536        99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-  177 (284)
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-
Confidence            4555555554432233 68999999999999999986  4699999999999999999987653   499999998763 


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~  231 (285)
                                  .....||+|++||||....
T Consensus       178 ------------~~~~~fDlIvsNPPyi~~~  196 (284)
T TIGR00536       178 ------------LAGQKIDIIVSNPPYIDEE  196 (284)
T ss_pred             ------------CcCCCccEEEECCCCCCcc
Confidence                        1223799999999996543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.27  E-value=1.6e-11  Score=106.63  Aligned_cols=105  Identities=20%  Similarity=0.215  Sum_probs=75.8

Q ss_pred             HHhCCCCCccccCCcccCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh
Q 023240          108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (285)
Q Consensus       108 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~  184 (285)
                      ++....++...|.+-...++--...+.+....   -++.+|||+|||.|.++..||+.|+.|+|+|+++++++.|+.+..
T Consensus        23 la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~  102 (243)
T COG2227          23 LASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHAL  102 (243)
T ss_pred             HHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhh
Confidence            33333344444444334444444444444442   368899999999999999999999999999999999999999987


Q ss_pred             cCC-CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240          185 SID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       185 ~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                      ..+ ++.+....++++.            ...++||+|++.
T Consensus       103 e~gv~i~y~~~~~edl~------------~~~~~FDvV~cm  131 (243)
T COG2227         103 ESGVNIDYRQATVEDLA------------SAGGQFDVVTCM  131 (243)
T ss_pred             hccccccchhhhHHHHH------------hcCCCccEEEEh
Confidence            665 5667777776654            234789999985

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.27  E-value=1.8e-11  Score=110.26  Aligned_cols=89  Identities=13%  Similarity=0.262  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-----~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++.+|||+|||+|+++..+++.     +..|+|+|+|+.+++.|+++.   +++.+.++|+.++|+            ..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~------------~~  149 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPF------------AD  149 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCC------------cC
Confidence            4578999999999999998865     237999999999999998774   579999999998875            34


Q ss_pred             CCceEEEEcCCCCCcHHHHHHhccCCCce
Q 023240          216 SGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       216 ~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~  244 (285)
                      +.||+|++...-....++.+.|.++|.++
T Consensus       150 ~sfD~I~~~~~~~~~~e~~rvLkpgG~li  178 (272)
T PRK11088        150 QSLDAIIRIYAPCKAEELARVVKPGGIVI  178 (272)
T ss_pred             CceeEEEEecCCCCHHHHHhhccCCCEEE
Confidence            67999988644334445545555554444

>PLN02244 tocopherol O-methyltransferase

Probab=99.27  E-value=7.6e-11  Score=109.53  Aligned_cols=88  Identities=18%  Similarity=0.169  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhcC-----CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccc
Q 023240          128 EINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (285)
Q Consensus       128 ~~~~~l~~~l~~-----~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~  198 (285)
                      .+...+++.+.+     .++.+|||||||+|.++..+++. +++|+|||+++.+++.|+++.+..   ++++++++|+.+
T Consensus       100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence            456667777766     56789999999999999999987 789999999999999999987654   379999999998


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      +++            ..+.||+|+++-..
T Consensus       180 ~~~------------~~~~FD~V~s~~~~  196 (340)
T PLN02244        180 QPF------------EDGQFDLVWSMESG  196 (340)
T ss_pred             CCC------------CCCCccEEEECCch
Confidence            874            34689999986543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.26  E-value=9.2e-11  Score=100.70  Aligned_cols=112  Identities=20%  Similarity=0.310  Sum_probs=85.0

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcc
Q 023240          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQED  195 (285)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD  195 (285)
                      ..++.+++....+..+.+.++.+|||+|||+|.++..++..   +.+|+++|+++.+++.|+++++.++   +++++.+|
T Consensus        21 ~~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d  100 (198)
T PRK00377         21 IPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE  100 (198)
T ss_pred             CCCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence            35777888888888889889999999999999999998864   3689999999999999999987653   78999999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      +.+...           ...+.||.|+++........+++   +++.+++.+
T Consensus       101 ~~~~l~-----------~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~l  141 (198)
T PRK00377        101 APEILF-----------TINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRI  141 (198)
T ss_pred             hhhhHh-----------hcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEE
Confidence            876421           12357999999765444444443   334444544

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.26  E-value=2.5e-11  Score=108.16  Aligned_cols=83  Identities=25%  Similarity=0.339  Sum_probs=69.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+|+|+|+++.|++.|+++     +++++++|+.+++       
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~-------   85 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK-------   85 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC-------
Confidence            356677777778899999999999999999987  67999999999999999764     6889999998763       


Q ss_pred             HHhhhcCCCCceEEEEcCCCCCc
Q 023240          208 LFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                            ..+.||+|+++..++..
T Consensus        86 ------~~~~fD~v~~~~~l~~~  102 (255)
T PRK14103         86 ------PKPDTDVVVSNAALQWV  102 (255)
T ss_pred             ------CCCCceEEEEehhhhhC
Confidence                  23679999999876554

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.25  E-value=4.3e-11  Score=106.70  Aligned_cols=103  Identities=16%  Similarity=0.187  Sum_probs=77.7

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ..++..+. .++.+|||+|||+|.++..+++.+.+|+++|++++|++.|+++....   ++++++++|+.+++.      
T Consensus        35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~------  107 (255)
T PRK11036         35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ------  107 (255)
T ss_pred             HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh------
Confidence            34555555 35679999999999999999999999999999999999999988754   378999999988642      


Q ss_pred             HHhhhcCCCCceEEEEcCCCCCc---HH---HHHHhccCCCcee
Q 023240          208 LFERRKSSSGFAKVVANIPFNIS---TD---VIKQLLPMGDIFS  245 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~~~---~~---i~~~l~~~g~~~~  245 (285)
                           .....||+|+++..++..   ..   .+.+++.+|+.+.
T Consensus       108 -----~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~  146 (255)
T PRK11036        108 -----HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALS  146 (255)
T ss_pred             -----hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence                 134679999987664422   22   2235555666664

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.25  E-value=7.2e-11  Score=108.53  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=86.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      +...+.+...+++.+.+.++.+|||||||+|+++..+++..   ..|+++|+++++++.|+++++..+  ++.++.+|+.
T Consensus        62 ~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~  141 (322)
T PRK13943         62 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY  141 (322)
T ss_pred             cCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence            56678889999999998888999999999999999999862   379999999999999999887653  7999999987


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCC-CCcHHHHHHhccCCCce
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDIF  244 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~-~~~~~i~~~l~~~g~~~  244 (285)
                      +...            ....||+|+.+... +.+...+++|.++|.++
T Consensus       142 ~~~~------------~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lv  177 (322)
T PRK13943        142 YGVP------------EFAPYDVIFVTVGVDEVPETWFTQLKEGGRVI  177 (322)
T ss_pred             hccc------------ccCCccEEEECCchHHhHHHHHHhcCCCCEEE
Confidence            6542            23569999986433 22344556666665543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.25  E-value=6.7e-11  Score=104.53  Aligned_cols=89  Identities=21%  Similarity=0.338  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccch
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR  202 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~  202 (285)
                      ..++..++..+.. .+.+|||+|||+|.++..++..  +.+++|+|+++.+++.|+.++...+  +++++++|+.+.   
T Consensus        74 ~~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---  149 (251)
T TIGR03534        74 EELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---  149 (251)
T ss_pred             HHHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---
Confidence            4555666665542 4568999999999999999986  5699999999999999999987653  699999998763   


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                ....+||+|++||||..
T Consensus       150 ----------~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534       150 ----------LPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             ----------CcCCceeEEEECCCCCc
Confidence                      23467999999999974

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.23  E-value=1.6e-10  Score=103.66  Aligned_cols=91  Identities=22%  Similarity=0.357  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhh-cC-CCeEEEEcccccccch
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~-~~-~~v~~~~gD~~~~~~~  202 (285)
                      +.+++.++......++.+|||+|||+|.++..++..  ..+|+|+|+++.+++.|++++. .. .+++++.+|+.+..  
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--  171 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--  171 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--
Confidence            455566655555567789999999999999999987  4799999999999999999987 22 47999999985531  


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                                 ..+.||+|++||||...
T Consensus       172 -----------~~~~fD~Iv~npPy~~~  188 (275)
T PRK09328        172 -----------PGGRFDLIVSNPPYIPE  188 (275)
T ss_pred             -----------CCCceeEEEECCCcCCc
Confidence                       23679999999999643

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.23  E-value=2.3e-11  Score=103.68  Aligned_cols=99  Identities=19%  Similarity=0.277  Sum_probs=80.0

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhH
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      ..++..+.+....+|.|+|||+|.+|..++++  ++.|+|||.|++|++.|+.+.   +++++..+|+.++.        
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--------   88 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--------   88 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--------
Confidence            45666777778889999999999999999998  789999999999999998876   68999999999984        


Q ss_pred             HhhhcCCCCceEEEEcCCCCCcH-------HHHHHhccCCCcee
Q 023240          209 FERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDIFS  245 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~~~~-------~i~~~l~~~g~~~~  245 (285)
                           .+...|++++|--+++..       ..+.+|.++|-+-.
T Consensus        89 -----p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV  127 (257)
T COG4106          89 -----PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV  127 (257)
T ss_pred             -----CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence                 456789999998777654       33445545544433

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=2.1e-11  Score=97.67  Aligned_cols=103  Identities=22%  Similarity=0.333  Sum_probs=85.7

Q ss_pred             CccccCCcccCCHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC-C
Q 023240          115 PRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID-Q  188 (285)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~-~  188 (285)
                      ++-.+.| |.+.++++..|+..+..    ..|++++|+|||+|.+....+..+ ..|+|+|+++++++.+.+|.+... +
T Consensus        19 pk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq   97 (185)
T KOG3420|consen   19 PKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ   97 (185)
T ss_pred             cchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh
Confidence            4445666 99999999998887753    357899999999999997776654 579999999999999999988765 8


Q ss_pred             eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       189 v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      +.++++|+.+.-            ...+.||.++.||||...
T Consensus        98 idlLqcdildle------------~~~g~fDtaviNppFGTk  127 (185)
T KOG3420|consen   98 IDLLQCDILDLE------------LKGGIFDTAVINPPFGTK  127 (185)
T ss_pred             hheeeeeccchh------------ccCCeEeeEEecCCCCcc
Confidence            899999998875            345889999999999643

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.21  E-value=1.4e-10  Score=104.44  Aligned_cols=82  Identities=26%  Similarity=0.367  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~  203 (285)
                      ..++.+++.+.+++|.+|||||||.|.++..+++. |++|+||.+|++..+.++++++..+   ++++...|..+++   
T Consensus        49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---  125 (273)
T PF02353_consen   49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---  125 (273)
T ss_dssp             HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence            34667888889999999999999999999999998 9999999999999999999998764   7999999988764   


Q ss_pred             hhhhHHhhhcCCCCceEEEEc
Q 023240          204 HMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                                  .+||.|++-
T Consensus       126 ------------~~fD~IvSi  134 (273)
T PF02353_consen  126 ------------GKFDRIVSI  134 (273)
T ss_dssp             -------------S-SEEEEE
T ss_pred             ------------CCCCEEEEE
Confidence                        389999985

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.21  E-value=8e-11  Score=114.69  Aligned_cols=77  Identities=18%  Similarity=0.361  Sum_probs=64.4

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +.+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.|++|+..++   +++++.+|+.+.             ....
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-------------~~~~  205 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-------------IEKQ  205 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-------------CcCC
Confidence            468999999999999998875  5799999999999999999987553   689999998652             1235


Q ss_pred             CceEEEEcCCCCCcH
Q 023240          217 GFAKVVANIPFNIST  231 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~  231 (285)
                      .||+||+||||....
T Consensus       206 ~fDlIvsNPPYi~~~  220 (506)
T PRK01544        206 KFDFIVSNPPYISHS  220 (506)
T ss_pred             CccEEEECCCCCCch
Confidence            799999999997543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.21  E-value=8.3e-11  Score=105.29  Aligned_cols=82  Identities=21%  Similarity=0.325  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~  204 (285)
                      .++.+++.+.+++|.+|||||||.|.+++.+|+. +.+|+|+++|+++.+.+++++...+   +++++..|..++.    
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----  135 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----  135 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----
Confidence            4677889999999999999999999999999998 8999999999999999999887653   8999999998874    


Q ss_pred             hhhHHhhhcCCCCceEEEEcC
Q 023240          205 MLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                                 +.||.||+--
T Consensus       136 -----------e~fDrIvSvg  145 (283)
T COG2230         136 -----------EPFDRIVSVG  145 (283)
T ss_pred             -----------cccceeeehh
Confidence                       3389998843

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.20  E-value=1.4e-10  Score=103.40  Aligned_cols=86  Identities=19%  Similarity=0.341  Sum_probs=71.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (285)
                      ....++..+...++.+|||||||+|.++..+++.  +.+|+|+|+++.|++.|++++   +++.++.+|+.++.      
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~------   89 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ------   89 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC------
Confidence            4556677777778899999999999999999986  579999999999999999886   47899999997653      


Q ss_pred             hHHhhhcCCCCceEEEEcCCCCCc
Q 023240          207 SLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                             ....||+|+++..++..
T Consensus        90 -------~~~~fD~v~~~~~l~~~  106 (258)
T PRK01683         90 -------PPQALDLIFANASLQWL  106 (258)
T ss_pred             -------CCCCccEEEEccChhhC
Confidence                   23579999999887544

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.19  E-value=2.2e-10  Score=97.02  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=74.5

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCE---------EEEEeCCHHHHHHHHHHhhcCC---
Q 023240          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GAT---------VLAIEKDQHMVGLVRERFASID---  187 (285)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~---------V~giD~~~~~v~~a~~~~~~~~---  187 (285)
                      .-.+.+.++..|+....+.++..+||..||+|.+.+..+..  ...         ++|.|+++++++.|+.|++..+   
T Consensus         9 ~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~   88 (179)
T PF01170_consen    9 PAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED   88 (179)
T ss_dssp             STSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence            35677889999999999999999999999999999887665  333         8899999999999999998654   


Q ss_pred             CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .+.+..+|+.++++            ..+.+|.||+||||...
T Consensus        89 ~i~~~~~D~~~l~~------------~~~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   89 YIDFIQWDARELPL------------PDGSVDAIVTNPPYGRR  119 (179)
T ss_dssp             GEEEEE--GGGGGG------------TTSBSCEEEEE--STTS
T ss_pred             ceEEEecchhhccc------------ccCCCCEEEECcchhhh
Confidence            68999999999873            34678999999999865

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.18  E-value=4.1e-10  Score=97.67  Aligned_cols=113  Identities=20%  Similarity=0.262  Sum_probs=87.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEE-cc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-ED  195 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~-gD  195 (285)
                      ++..++....+...+...++++|||||+++|+++++||..   .++++++|+++++.+.|++|+++.+   +|+++. ||
T Consensus        41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd  120 (219)
T COG4122          41 PIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD  120 (219)
T ss_pred             CCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence            4455888888888888888999999999999999999985   4699999999999999999999875   688888 58


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcC---CCCCcHHHHHHhccCCCcee
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~---P~~~~~~i~~~l~~~g~~~~  245 (285)
                      +.+.--.          ...++||+||.+-   .|-..-+....++.+|+++.
T Consensus       121 al~~l~~----------~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv  163 (219)
T COG4122         121 ALDVLSR----------LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIV  163 (219)
T ss_pred             HHHHHHh----------ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence            8775310          1357899999973   23222344445566666664

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1e-10  Score=105.53  Aligned_cols=99  Identities=21%  Similarity=0.261  Sum_probs=71.1

Q ss_pred             CCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-C--
Q 023240          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q--  188 (285)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~--  188 (285)
                      ++|.-.||+-+...-.+.-..++.+.. ++.+|||+|||+|.+++++++.|+ +|+|+|+|+.+++.|++|+..|+ .  
T Consensus       135 lDPGlAFGTG~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~  213 (300)
T COG2264         135 LDPGLAFGTGTHPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELL  213 (300)
T ss_pred             EccccccCCCCChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchh
Confidence            455667876444444444444444333 789999999999999999999986 69999999999999999998775 1  


Q ss_pred             eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       189 v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      ++....+..+.             ...++||+||+|.
T Consensus       214 ~~~~~~~~~~~-------------~~~~~~DvIVANI  237 (300)
T COG2264         214 VQAKGFLLLEV-------------PENGPFDVIVANI  237 (300)
T ss_pred             hhcccccchhh-------------cccCcccEEEehh
Confidence            22333333332             2346899999996

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.18  E-value=1.1e-10  Score=89.24  Aligned_cols=79  Identities=24%  Similarity=0.439  Sum_probs=61.0

Q ss_pred             EEEEcCcccHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       145 VLDiGcG~G~~t~~la~~~-----~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      |||+|||+|..+..+++..     .+++|+|+|++|++.++++....+ +++++++|+.+++.            ..++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~------------~~~~~   68 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF------------SDGKF   68 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH------------HSSSE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc------------cCCCe
Confidence            7999999999999999863     799999999999999999986543 89999999999863            34689


Q ss_pred             eEEEE-cC-CCCCcHHHHH
Q 023240          219 AKVVA-NI-PFNISTDVIK  235 (285)
Q Consensus       219 D~Vv~-n~-P~~~~~~i~~  235 (285)
                      |+|++ .. ..+...+.+.
T Consensus        69 D~v~~~~~~~~~~~~~~~~   87 (101)
T PF13649_consen   69 DLVVCSGLSLHHLSPEELE   87 (101)
T ss_dssp             EEEEE-TTGGGGSSHHHHH
T ss_pred             eEEEEcCCccCCCCHHHHH
Confidence            99999 34 2334443333

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.18  E-value=2.6e-10  Score=107.73  Aligned_cols=98  Identities=17%  Similarity=0.229  Sum_probs=73.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~  197 (285)
                      ++.+....+..+..+.  ++++|||+|||+|.+++.++..++ +|+++|+|+.+++.|++|++.++    +++++++|+.
T Consensus       204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~  281 (396)
T PRK15128        204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_pred             cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence            4444444455555443  578999999999999988776654 89999999999999999998653    6899999997


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      +....     +.   .....||+||+|||+...
T Consensus       282 ~~l~~-----~~---~~~~~fDlVilDPP~f~~  306 (396)
T PRK15128        282 KLLRT-----YR---DRGEKFDVIVMDPPKFVE  306 (396)
T ss_pred             HHHHH-----HH---hcCCCCCEEEECCCCCCC
Confidence            75210     00   124579999999998543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.18  E-value=1.2e-10  Score=102.67  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=83.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~  197 (285)
                      ..++.....+...+...++++|||+|||+|+++++++..   +++|+++|+++++++.|+++++.++   +++++.||+.
T Consensus        51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            456666666666667778899999999999999999875   4699999999999999999998764   7999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcC---CCCCcHHHHHHhccCCCce
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~---P~~~~~~i~~~l~~~g~~~  244 (285)
                      +.-.     .+... ...+.||+|+.+.   +|...-+.+..++..|+.+
T Consensus       131 ~~L~-----~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~i  174 (234)
T PLN02781        131 SALD-----QLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGII  174 (234)
T ss_pred             HHHH-----HHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEE
Confidence            7521     01000 1246799999984   3433233334455555554

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.17  E-value=1.6e-10  Score=108.20  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=79.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchh
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~  203 (285)
                      .+.+.+.+.+.+... +.+|||++||+|.+++.+++...+|+|||.++.+++.|++|+..++  +++++.+|+.+.-. .
T Consensus       192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~-~  269 (362)
T PRK05031        192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ-A  269 (362)
T ss_pred             HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH-H
Confidence            344555555555432 3579999999999999999887799999999999999999987664  89999999977421 0


Q ss_pred             hhhhHHhhhc---------CCCCceEEEEcCCCCCc-HHHHHHhccC
Q 023240          204 HMLSLFERRK---------SSSGFAKVVANIPFNIS-TDVIKQLLPM  240 (285)
Q Consensus       204 ~~~d~~~~~~---------~~~~~D~Vv~n~P~~~~-~~i~~~l~~~  240 (285)
                          +.....         ....||+||.+||+... ..+++.|...
T Consensus       270 ----~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~  312 (362)
T PRK05031        270 ----MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAY  312 (362)
T ss_pred             ----HhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHcc
Confidence                000000         02258999999998654 5666777664

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.17  E-value=1.8e-10  Score=107.45  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=82.0

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccc
Q 023240          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (285)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~  199 (285)
                      |+...+.++..+.+.+...+ .+|||+|||+|.+++.+++...+|+|||+++++++.|++|++.++  +++++.+|+.++
T Consensus       179 N~~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~  257 (353)
T TIGR02143       179 NAAVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF  257 (353)
T ss_pred             CHHHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence            33344556666666665333 479999999999999999887799999999999999999998664  899999999775


Q ss_pred             cchhhhh-hH--Hhh-hcCCCCceEEEEcCCCCCc-HHHHHHhccC
Q 023240          200 HIRSHML-SL--FER-RKSSSGFAKVVANIPFNIS-TDVIKQLLPM  240 (285)
Q Consensus       200 ~~~~~~~-d~--~~~-~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~~  240 (285)
                      ....... .+  ... ......+|+|+.+||.... ..+++.+...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~  303 (353)
T TIGR02143       258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAY  303 (353)
T ss_pred             HHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcC
Confidence            3100000 00  000 0001237999999997654 5666777664

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.16  E-value=7.5e-11  Score=108.48  Aligned_cols=73  Identities=25%  Similarity=0.248  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++.+|||||||+|.++..+++.+++|+|||.++++++.|+.+....   .+++++++|+.+++.            ..+.
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------------~~~~  198 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------------EGRK  198 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------------ccCC
Confidence            5679999999999999999988999999999999999999886543   379999999988763            3467


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      ||+|++.-
T Consensus       199 FD~Vi~~~  206 (322)
T PLN02396        199 FDAVLSLE  206 (322)
T ss_pred             CCEEEEhh
Confidence            99999853

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.16  E-value=4.1e-10  Score=96.45  Aligned_cols=76  Identities=21%  Similarity=0.360  Sum_probs=67.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~  198 (285)
                      +++.+++...++..+.+.++.+|||+|||+|.++..+++.  +.+|+++|+++++++.++++++..  ++++++.+|+.+
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            6777888888999998888899999999999999999865  579999999999999999998765  479999999865

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.15  E-value=1.6e-10  Score=86.01  Aligned_cols=72  Identities=26%  Similarity=0.399  Sum_probs=60.0

Q ss_pred             EEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240          146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       146 LDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                      ||+|||+|..+..+++. +.+|+++|+++++++.++++... .++.++.+|+.++++            +.++||.|+++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~------------~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPF------------PDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-------------TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCcc------------ccccccccccc
Confidence            89999999999999999 88999999999999999998864 367799999999985            45789999998


Q ss_pred             CCCCCc
Q 023240          225 IPFNIS  230 (285)
Q Consensus       225 ~P~~~~  230 (285)
                      --++..
T Consensus        68 ~~~~~~   73 (95)
T PF08241_consen   68 SVLHHL   73 (95)
T ss_dssp             SHGGGS
T ss_pred             cceeec
Confidence            766554

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.15  E-value=2.1e-10  Score=111.07  Aligned_cols=90  Identities=18%  Similarity=0.240  Sum_probs=71.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ...++..+...++.+|||||||+|.++..+++.+.+|+|+|+++.|++.++......++++++++|+.+....       
T Consensus        26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-------   98 (475)
T PLN02336         26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-------   98 (475)
T ss_pred             hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-------
Confidence            4566667766667899999999999999999988899999999999998876544346899999999643211       


Q ss_pred             hhhcCCCCceEEEEcCCCCC
Q 023240          210 ERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~~  229 (285)
                         ....+||+|+++.+++.
T Consensus        99 ---~~~~~fD~I~~~~~l~~  115 (475)
T PLN02336         99 ---ISDGSVDLIFSNWLLMY  115 (475)
T ss_pred             ---CCCCCEEEEehhhhHHh
Confidence               23467999999987654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.14  E-value=6.5e-10  Score=94.92  Aligned_cols=108  Identities=17%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             ccCCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~  197 (285)
                      ..++..+...+...+.. ..+.+|||++||+|.+++.++.+|+ +|++||.++.+++.+++|++.++   +++++++|+.
T Consensus        30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~  109 (189)
T TIGR00095        30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL  109 (189)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence            45555556566665532 3578999999999999999999975 89999999999999999987653   6899999996


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhc
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLL  238 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~  238 (285)
                      +.-..     +.   .....+|+|+.+|||...  .+++..+.
T Consensus       110 ~~l~~-----~~---~~~~~~dvv~~DPPy~~~~~~~~l~~l~  144 (189)
T TIGR00095       110 RALKF-----LA---KKPTFDNVIYLDPPFFNGALQALLELCE  144 (189)
T ss_pred             HHHHH-----hh---ccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence            54110     00   112358999999999642  34444443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.14  E-value=4.1e-10  Score=98.00  Aligned_cols=82  Identities=27%  Similarity=0.347  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240          128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       128 ~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (285)
                      .+...+++.+.  ..++.+|||+|||+|.++..++..+.+|+|+|++++|++.|++++...   +++.+.++|+.+.+  
T Consensus        40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--  117 (219)
T TIGR02021        40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--  117 (219)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence            44556666666  456789999999999999999988889999999999999999988654   27899999987752  


Q ss_pred             hhhhhHHhhhcCCCCceEEEEc
Q 023240          203 SHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                                   ++||+|++.
T Consensus       118 -------------~~fD~ii~~  126 (219)
T TIGR02021       118 -------------GEFDIVVCM  126 (219)
T ss_pred             -------------CCcCEEEEh
Confidence                         568998875

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.13  E-value=5.1e-10  Score=107.05  Aligned_cols=96  Identities=21%  Similarity=0.273  Sum_probs=77.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~  199 (285)
                      +..+......+...+.+.++.+|||+|||+|..+..+++..  .+|+++|+++.+++.++++++..+ +++++++|+.+.
T Consensus       226 ~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~  305 (427)
T PRK10901        226 VSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP  305 (427)
T ss_pred             EEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence            44445555566677888889999999999999999999873  599999999999999999998765 678999999875


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +..          .....||.|++|||+.
T Consensus       306 ~~~----------~~~~~fD~Vl~D~Pcs  324 (427)
T PRK10901        306 AQW----------WDGQPFDRILLDAPCS  324 (427)
T ss_pred             hhh----------cccCCCCEEEECCCCC
Confidence            310          1245799999999975

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.13  E-value=3.6e-10  Score=102.57  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+ ++++..+|+...+             ....||
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-------------~~~~fD  186 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-------------IQEEYD  186 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-------------ccCCcc
Confidence            45699999999999999999999999999999999999999887554 7888888887653             246799


Q ss_pred             EEEEcCCCC
Q 023240          220 KVVANIPFN  228 (285)
Q Consensus       220 ~Vv~n~P~~  228 (285)
                      +|+++..++
T Consensus       187 ~I~~~~vl~  195 (287)
T PRK12335        187 FILSTVVLM  195 (287)
T ss_pred             EEEEcchhh
Confidence            999986654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.13  E-value=8.7e-10  Score=97.92  Aligned_cols=76  Identities=21%  Similarity=0.344  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .++.+|||+|||+|..+..+++.    +.+|+|+|+|+.|++.|++++...   .+++++++|+.++++           
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----------  123 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----------  123 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------
Confidence            36789999999999999888762    579999999999999999998754   379999999988753           


Q ss_pred             cCCCCceEEEEcCCCCC
Q 023240          213 KSSSGFAKVVANIPFNI  229 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~  229 (285)
                         +.+|+|+++..++.
T Consensus       124 ---~~~D~vv~~~~l~~  137 (247)
T PRK15451        124 ---ENASMVVLNFTLQF  137 (247)
T ss_pred             ---CCCCEEehhhHHHh
Confidence               34799999876544

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.13  E-value=6.5e-10  Score=100.97  Aligned_cols=117  Identities=20%  Similarity=0.219  Sum_probs=76.6

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---Ce
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QL  189 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v  189 (285)
                      ++...||........+...+++.+. .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++|...++   ++
T Consensus       133 dpg~aFgtG~h~tt~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~  211 (288)
T TIGR00406       133 DPGLAFGTGTHPTTSLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL  211 (288)
T ss_pred             CCCCcccCCCCHHHHHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce
Confidence            3444565433323333333333332 3678999999999999999888764 89999999999999999987653   45


Q ss_pred             EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH---HHhccCCCcee
Q 023240          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFS  245 (285)
Q Consensus       190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~~  245 (285)
                      .+..+|...              .....||+|++|........++   .+++.+|+.+.
T Consensus       212 ~~~~~~~~~--------------~~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li  256 (288)
T TIGR00406       212 QVKLIYLEQ--------------PIEGKADVIVANILAEVIKELYPQFSRLVKPGGWLI  256 (288)
T ss_pred             EEEeccccc--------------ccCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEE
Confidence            666665322              1245799999997654333332   34455555553

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.12  E-value=5e-10  Score=102.75  Aligned_cols=85  Identities=15%  Similarity=0.231  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEE-cccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQ-EDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~-gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .+.+|||||||+|.+...++..  +.+++|+|+|+.+++.|++|++.++    +|+++. .|..++..     .++   .
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~-----~i~---~  185 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFK-----GII---H  185 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhh-----ccc---c
Confidence            4578999999999888887765  6799999999999999999999873    566654 33322210     000   1


Q ss_pred             CCCCceEEEEcCCCCCcHHH
Q 023240          214 SSSGFAKVVANIPFNISTDV  233 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~~~~i  233 (285)
                      ....||+|++||||+.....
T Consensus       186 ~~~~fDlivcNPPf~~s~~e  205 (321)
T PRK11727        186 KNERFDATLCNPPFHASAAE  205 (321)
T ss_pred             cCCceEEEEeCCCCcCcchh
Confidence            34679999999999876543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.12  E-value=9.3e-10  Score=98.75  Aligned_cols=86  Identities=13%  Similarity=0.108  Sum_probs=71.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~  205 (285)
                      ......+.+.++.+|||+|||+|..+..+++.   .+.|+++|+++.+++.++++++..+  +++++++|+..++.    
T Consensus        61 ~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~----  136 (264)
T TIGR00446        61 MIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA----  136 (264)
T ss_pred             HHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh----
Confidence            33445667778899999999999999999875   3589999999999999999998764  78999999876542    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                              ..+.||.|+.|||..
T Consensus       137 --------~~~~fD~Vl~D~Pcs  151 (264)
T TIGR00446       137 --------AVPKFDAILLDAPCS  151 (264)
T ss_pred             --------hccCCCEEEEcCCCC
Confidence                    234599999999965

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.11  E-value=4.1e-10  Score=99.20  Aligned_cols=99  Identities=20%  Similarity=0.307  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccc
Q 023240          127 SEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (285)
Q Consensus       127 ~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~  198 (285)
                      +++++.+++.+...   .+..|||+|||+|.+++.++..  .+.|+|||.++.++..|.+|...+   +.+.+++-+...
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            56677777766532   4568999999999999998875  579999999999999999998765   578777554433


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~  232 (285)
                      --+....       ...++.|++++||||-...+
T Consensus       211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD  237 (328)
T KOG2904|consen  211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD  237 (328)
T ss_pred             ccccccc-------cccCceeEEecCCCcccccc
Confidence            2111000       23478999999999976654

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.11  E-value=4.7e-10  Score=96.71  Aligned_cols=76  Identities=22%  Similarity=0.284  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccc-ccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~-~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.|+++....  ++++++++|+ ..++..          ...
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~  109 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD  109 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence            5679999999999999999886  468999999999999999988754  4899999999 554310          234


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      ..||.|+++.|
T Consensus       110 ~~~D~V~~~~~  120 (202)
T PRK00121        110 GSLDRIYLNFP  120 (202)
T ss_pred             cccceEEEECC
Confidence            67999999854

>PRK04266 fibrillarin; Provisional

Probab=99.11  E-value=6.9e-10  Score=97.31  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=73.9

Q ss_pred             HHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      +.+.+.++.+|||+|||+|..+..+++.  ..+|+|+|+++.|++.+.++.+..+|+.++.+|+.+...   ..+     
T Consensus        66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~---~~~-----  137 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPER---YAH-----  137 (226)
T ss_pred             hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcch---hhh-----
Confidence            3577888999999999999999999987  368999999999999888777655789999999875210   001     


Q ss_pred             cCCCCceEEEEcCCCCCc----HHHHHHhccCCCcee
Q 023240          213 KSSSGFAKVVANIPFNIS----TDVIKQLLPMGDIFS  245 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~----~~i~~~l~~~g~~~~  245 (285)
                       ....+|+|+++.+....    -..+.+++.+|+.+.
T Consensus       138 -l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lv  173 (226)
T PRK04266        138 -VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLL  173 (226)
T ss_pred             -ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEE
Confidence             12459999998664221    122344555566554

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.10  E-value=8e-10  Score=93.85  Aligned_cols=122  Identities=17%  Similarity=0.357  Sum_probs=83.3

Q ss_pred             cCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240          124 MLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~  197 (285)
                      .+...+.+.+...++..  .+.++||+.||+|.+++..+.+|+ +|+.||.|+.+++.+++|++..+   +++++.+|+.
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~  102 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF  102 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence            44556667777777653  788999999999999999988875 89999999999999999998654   5899999976


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH---HHHHHhccCCCceeeeEeeehH
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFSEVVLLLQE  253 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~---~i~~~l~~~g~~~~~~~~~~~~  253 (285)
                      ..-...     .   .....||+|+.+|||....   .++..+...+-+-......++.
T Consensus       103 ~~l~~~-----~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  103 KFLLKL-----A---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             HHHHHH-----H---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             HHHHhh-----c---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            542110     0   2457899999999998764   3566665443333334444443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.10  E-value=3e-10  Score=103.10  Aligned_cols=104  Identities=26%  Similarity=0.287  Sum_probs=68.7

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---Ce
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QL  189 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v  189 (285)
                      +|...||.-....-.+.-.+++.+ ..++.+|||+|||||.+++..++.|+ +|+|+|+++.+++.|++|++.|+   ++
T Consensus       135 dPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~  213 (295)
T PF06325_consen  135 DPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRI  213 (295)
T ss_dssp             STTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCE
T ss_pred             CCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeE
Confidence            455567653333333333333333 33678999999999999999999976 79999999999999999998875   33


Q ss_pred             EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH
Q 023240          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (285)
Q Consensus       190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~  234 (285)
                      .+  ....+.              ...+||+|++|.-......+.
T Consensus       214 ~v--~~~~~~--------------~~~~~dlvvANI~~~vL~~l~  242 (295)
T PF06325_consen  214 EV--SLSEDL--------------VEGKFDLVVANILADVLLELA  242 (295)
T ss_dssp             EE--SCTSCT--------------CCS-EEEEEEES-HHHHHHHH
T ss_pred             EE--EEeccc--------------ccccCCEEEECCCHHHHHHHH
Confidence            33  222221              237899999998765544433

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02672 methionine S-methyltransferase

Probab=99.10  E-value=3.7e-10  Score=117.16  Aligned_cols=96  Identities=13%  Similarity=0.221  Sum_probs=71.4

Q ss_pred             cCCHHHHHHHHHHhcCC-----CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC----------
Q 023240          124 MLNSEINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI----------  186 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~-----~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~----------  186 (285)
                      ++++.....+++.+...     ++.+|||+|||+|.+++.++..  ..+|+|+|+|+.+++.|++|+..+          
T Consensus        96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            34444444445444322     2468999999999999999986  369999999999999999998753          


Q ss_pred             --------CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          187 --------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       187 --------~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                              ++++++++|+.+...           .....||+||+||||-..
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~~-----------~~~~~fDlIVSNPPYI~~  216 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYCR-----------DNNIELDRIVGCIPQILN  216 (1082)
T ss_pred             ccccccccccEEEEECchhhhcc-----------ccCCceEEEEECCCcCCC
Confidence                    268999999876421           112369999999999544

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.10  E-value=7.6e-10  Score=101.37  Aligned_cols=105  Identities=24%  Similarity=0.367  Sum_probs=75.1

Q ss_pred             CccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH---------hCCEEEEEeCCHHHHHHHHHHhhc
Q 023240          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~---------~~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      .++..|+ |+|+..++..|+..+...++.+|+|..||+|.+...+.+         ...+++|+|+++.++..|+.++.-
T Consensus        21 ~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l   99 (311)
T PF02384_consen   21 SRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL   99 (311)
T ss_dssp             TTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred             hccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence            4556777 899999999999999888888999999999999887765         256899999999999999987653


Q ss_pred             CC----CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          186 ID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       186 ~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .+    +..+..+|.+..+..          .....||+|++||||...
T Consensus       100 ~~~~~~~~~i~~~d~l~~~~~----------~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  100 HGIDNSNINIIQGDSLENDKF----------IKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             TTHHCBGCEEEES-TTTSHSC----------TST--EEEEEEE--CTCE
T ss_pred             hcccccccccccccccccccc----------ccccccccccCCCCcccc
Confidence            32    456889998766431          124689999999999765

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.10  E-value=7.6e-10  Score=95.63  Aligned_cols=72  Identities=14%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++.+|||+|||+|..+..+++.  +.+++|||+|++|++.|+++.   ++++++.+|+.+ ++            ..++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~~------------~~~s  105 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-PF------------KDNF  105 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-CC------------CCCC
Confidence            35678999999999999999886  679999999999999999875   367889999887 43            4578


Q ss_pred             ceEEEEcCCC
Q 023240          218 FAKVVANIPF  227 (285)
Q Consensus       218 ~D~Vv~n~P~  227 (285)
                      ||+|+++-.+
T Consensus       106 fD~V~~~~vL  115 (204)
T TIGR03587       106 FDLVLTKGVL  115 (204)
T ss_pred             EEEEEECChh
Confidence            9999997654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.10  E-value=2.6e-10  Score=100.00  Aligned_cols=104  Identities=26%  Similarity=0.314  Sum_probs=74.1

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--------CeEEEEcccccccchhhhhhHHhhhc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--------~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      |.+|||+|||+|-++..||+.|+.|+|||.++.|++.|+++....|        ++++.+.|+....             
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-------------  156 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-------------  156 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------------
Confidence            5789999999999999999999999999999999999999944332        2556666666642             


Q ss_pred             CCCCceEEEEcCC-------CCCcHHHHHHhccCCCcee---------eeEeeehHhHHHHhc
Q 023240          214 SSSGFAKVVANIP-------FNISTDVIKQLLPMGDIFS---------EVVLLLQEETALRLV  260 (285)
Q Consensus       214 ~~~~~D~Vv~n~P-------~~~~~~i~~~l~~~g~~~~---------~~~~~~~~~~~~rl~  260 (285)
                        +.||+|++---       -.......+.+.++|.+|-         .....+-.+...+++
T Consensus       157 --~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~iv  217 (282)
T KOG1270|consen  157 --GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIV  217 (282)
T ss_pred             --cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhc
Confidence              55999998432       2222333446667766662         223344456667766

>PLN02476 O-methyltransferase

Probab=99.09  E-value=1.7e-09  Score=97.26  Aligned_cols=117  Identities=13%  Similarity=0.210  Sum_probs=87.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      ....++....+...+...++++|||||||+|++++++|..   +++|+++|.+++..+.|++++++.+   +|+++.||+
T Consensus       100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            5667888888888888888999999999999999999974   5689999999999999999998764   899999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH---HHHHhccCCCcee
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIFS  245 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~---i~~~l~~~g~~~~  245 (285)
                      .+.-..     +... ...+.||.||.+.+-..-.+   ....++..|+.+.
T Consensus       180 ~e~L~~-----l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV  225 (278)
T PLN02476        180 AESLKS-----MIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIV  225 (278)
T ss_pred             HHHHHH-----HHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            875210     1000 12367999999977432222   2334555566553

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.09  E-value=5.7e-10  Score=95.53  Aligned_cols=77  Identities=23%  Similarity=0.283  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ...+|||||||+|.++..++..  +.+|+|+|+++.+++.|+++....  +|++++++|+.+++...         ...+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---------~~~~   86 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---------FPDG   86 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh---------CCCC
Confidence            4569999999999999999987  569999999999999999887754  48999999998754110         2335


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      .+|.|+.|.|
T Consensus        87 ~~d~v~~~~p   96 (194)
T TIGR00091        87 SLSKVFLNFP   96 (194)
T ss_pred             ceeEEEEECC
Confidence            7999999965

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.08  E-value=3.7e-10  Score=105.36  Aligned_cols=121  Identities=17%  Similarity=0.140  Sum_probs=78.8

Q ss_pred             ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEE
Q 023240          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQ  193 (285)
Q Consensus       116 ~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~  193 (285)
                      ..+|+-|....+.++..++++++..++ .|||+.||+|.+++.+|....+|+|||+++++++.|++|++.++  |++++.
T Consensus       172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~  250 (352)
T PF05958_consen  172 GSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIR  250 (352)
T ss_dssp             TS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred             CcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEE
Confidence            344455555556777778888887655 89999999999999999999999999999999999999999775  999999


Q ss_pred             cccccccchhh---hhhHHhhh-cCCCCceEEEEcCCCCCcHH-HHHHh
Q 023240          194 EDFVKCHIRSH---MLSLFERR-KSSSGFAKVVANIPFNISTD-VIKQL  237 (285)
Q Consensus       194 gD~~~~~~~~~---~~d~~~~~-~~~~~~D~Vv~n~P~~~~~~-i~~~l  237 (285)
                      +++.++...-.   .+..+... .....+|+|+.+||.....+ +++.+
T Consensus       251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            98876532100   00000000 12236899999999876665 44444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.07  E-value=8.8e-10  Score=100.87  Aligned_cols=97  Identities=21%  Similarity=0.276  Sum_probs=87.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEc-ccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQE-DFVKC  199 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~g-D~~~~  199 (285)
                      -.++|++++.|+......+|+.|||.-||||.+.+...-.|++++|.|++..|+.-|+.|++.++  ...+..+ |+.++
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l  258 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL  258 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence            67889999999999999999999999999999999988889999999999999999999999774  6666666 99999


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~  231 (285)
                      |+            +...+|.|+.+|||...+
T Consensus       259 pl------------~~~~vdaIatDPPYGrst  278 (347)
T COG1041         259 PL------------RDNSVDAIATDPPYGRST  278 (347)
T ss_pred             CC------------CCCccceEEecCCCCccc
Confidence            85            334799999999998765

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.07  E-value=1.2e-09  Score=105.67  Aligned_cols=97  Identities=15%  Similarity=0.261  Sum_probs=75.6

Q ss_pred             cCCcccCCHH--HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEc
Q 023240          119 LGQHYMLNSE--INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVLQE  194 (285)
Q Consensus       119 ~g~~~~~~~~--~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~g  194 (285)
                      +|..+...+.  ..+.+++.+.+.++.+|||||||+|..+..++.. +++|+|+|+|+.+++.|+++.... .+++++++
T Consensus       242 ~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~  321 (475)
T PLN02336        242 FGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA  321 (475)
T ss_pred             hCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence            3443444333  3456777777777889999999999999999886 789999999999999999887543 37999999


Q ss_pred             ccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      |+.+.++            +.+.||+|++.-.+
T Consensus       322 d~~~~~~------------~~~~fD~I~s~~~l  342 (475)
T PLN02336        322 DCTKKTY------------PDNSFDVIYSRDTI  342 (475)
T ss_pred             CcccCCC------------CCCCEEEEEECCcc
Confidence            9988763            34679999996443

>PRK05785 hypothetical protein; Provisional

Probab=99.07  E-value=9.2e-10  Score=96.58  Aligned_cols=71  Identities=15%  Similarity=0.240  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      ++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|+++.      ..+++|+.++|+            ..++||
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~------------~d~sfD  112 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPF------------RDKSFD  112 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCC------------CCCCEE
Confidence            4679999999999999999988 689999999999999998652      357899999875            447899


Q ss_pred             EEEEcCCCCC
Q 023240          220 KVVANIPFNI  229 (285)
Q Consensus       220 ~Vv~n~P~~~  229 (285)
                      +|+++...+.
T Consensus       113 ~v~~~~~l~~  122 (226)
T PRK05785        113 VVMSSFALHA  122 (226)
T ss_pred             EEEecChhhc
Confidence            9999866543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.06  E-value=1.4e-09  Score=92.64  Aligned_cols=79  Identities=14%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhh
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +++.++..++.++||+|||.|..++.||++|.+|+|+|.|+.+++.+++..+..+ +|+....|+.+..+          
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~----------   91 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF----------   91 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-----------
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc----------
Confidence            4444555577899999999999999999999999999999999999988776544 68899999888753          


Q ss_pred             hcCCCCceEEEEc
Q 023240          212 RKSSSGFAKVVAN  224 (285)
Q Consensus       212 ~~~~~~~D~Vv~n  224 (285)
                         +..||+|++.
T Consensus        92 ---~~~yD~I~st  101 (192)
T PF03848_consen   92 ---PEEYDFIVST  101 (192)
T ss_dssp             ---TTTEEEEEEE
T ss_pred             ---cCCcCEEEEE
Confidence               3579999985

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.06  E-value=1.3e-09  Score=104.83  Aligned_cols=93  Identities=23%  Similarity=0.334  Sum_probs=75.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~  199 (285)
                      ........+...+.+.++.+|||+|||+|..+..+++.   +++|+++|+++.+++.+++|++..+  +++++++|+.+.
T Consensus       234 ~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~  313 (444)
T PRK14902        234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKV  313 (444)
T ss_pred             EEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc
Confidence            33444555666777788899999999999999999885   4699999999999999999998764  799999999875


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ..           .....||.|++|||..
T Consensus       314 ~~-----------~~~~~fD~Vl~D~Pcs  331 (444)
T PRK14902        314 HE-----------KFAEKFDKILVDAPCS  331 (444)
T ss_pred             cc-----------hhcccCCEEEEcCCCC
Confidence            31           1125799999999954

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.05  E-value=2.8e-09  Score=99.84  Aligned_cols=87  Identities=16%  Similarity=0.192  Sum_probs=70.1

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      .++..+....+..+||||||+|.++..+|..  +..++|+|+++.+++.|.+++...  +|+.++++|+..+.-.     
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-----  187 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-----  187 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-----
Confidence            3444555556779999999999999999987  579999999999999999988765  4999999999765210     


Q ss_pred             HHhhhcCCCCceEEEEcCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                           ...+.+|.|+.|.|.-
T Consensus       188 -----~~~~s~D~I~lnFPdP  203 (390)
T PRK14121        188 -----LPSNSVEKIFVHFPVP  203 (390)
T ss_pred             -----CCCCceeEEEEeCCCC
Confidence                 2457899999997643

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.04  E-value=1.2e-09  Score=110.37  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=72.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~  197 (285)
                      ++.+....+.++..+.  ++.+|||+|||+|.+++.++..|+ +|++||+|+.+++.|++|++.++    +++++++|+.
T Consensus       522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~  599 (702)
T PRK11783        522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL  599 (702)
T ss_pred             ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence            3444444444444333  578999999999999999998865 69999999999999999998653    6899999997


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      ++.-           .....||+||+|||+..
T Consensus       600 ~~l~-----------~~~~~fDlIilDPP~f~  620 (702)
T PRK11783        600 AWLK-----------EAREQFDLIFIDPPTFS  620 (702)
T ss_pred             HHHH-----------HcCCCcCEEEECCCCCC
Confidence            6421           12467999999999853

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.04  E-value=1.5e-09  Score=96.02  Aligned_cols=108  Identities=23%  Similarity=0.323  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~  199 (285)
                      =+.-+..|+..+.+.+|.+|||.|+|+|.++..|++.   .++|++.|+.++.++.|++|++..+   ++++.+.|+.+.
T Consensus        25 YpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~  104 (247)
T PF08704_consen   25 YPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE  104 (247)
T ss_dssp             -HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG
T ss_pred             eCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc
Confidence            3566788999999999999999999999999999986   4699999999999999999998763   899999999764


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCC--CCCcHHHHHHh-ccCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQL-LPMGD  242 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P--~~~~~~i~~~l-~~~g~  242 (285)
                      .+..         .....+|.||.++|  +.....+.+.| .++|.
T Consensus       105 g~~~---------~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~  141 (247)
T PF08704_consen  105 GFDE---------ELESDFDAVFLDLPDPWEAIPHAKRALKKPGGR  141 (247)
T ss_dssp             --ST---------T-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEE
T ss_pred             cccc---------cccCcccEEEEeCCCHHHHHHHHHHHHhcCCce
Confidence            3311         12367999999977  45555555666 34433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.04  E-value=1.6e-09  Score=97.37  Aligned_cols=80  Identities=16%  Similarity=0.311  Sum_probs=65.2

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhh
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+.++.+|||+|||+|..+..++.. +  .+|+++|+++.+++.|+++....  ++++++.+|+.++++          
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~----------  142 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV----------  142 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC----------
Confidence            34557899999999999988877764 3  47999999999999999987654  489999999988764          


Q ss_pred             hcCCCCceEEEEcCCCC
Q 023240          212 RKSSSGFAKVVANIPFN  228 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~  228 (285)
                        ..+.||+|++|..++
T Consensus       143 --~~~~fD~Vi~~~v~~  157 (272)
T PRK11873        143 --ADNSVDVIISNCVIN  157 (272)
T ss_pred             --CCCceeEEEEcCccc
Confidence              345799999986544

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.8e-09  Score=90.60  Aligned_cols=113  Identities=18%  Similarity=0.290  Sum_probs=93.3

Q ss_pred             CcccCCHHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC--------
Q 023240          121 QHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI--------  186 (285)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~--------  186 (285)
                      ...+..+.+...+++.|.  +.+|.+.||+|+|+||++..++..    |..+.|||..++.++.+++|+.+.        
T Consensus        60 n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~  139 (237)
T KOG1661|consen   60 NLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSS  139 (237)
T ss_pred             ceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhh
Confidence            445667888899999988  789999999999999999998864    445699999999999999998752        


Q ss_pred             ----CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc-CCCCCcHHHHHHhccCCCcee
Q 023240          187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       187 ----~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n-~P~~~~~~i~~~l~~~g~~~~  245 (285)
                          +++.++.||.....            .+..+||.|... -.-..+.+.+++|+++|+++-
T Consensus       140 ~~~~~~l~ivvGDgr~g~------------~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  140 KLKRGELSIVVGDGRKGY------------AEQAPYDAIHVGAAASELPQELLDQLKPGGRLLI  191 (237)
T ss_pred             hhccCceEEEeCCccccC------------CccCCcceEEEccCccccHHHHHHhhccCCeEEE
Confidence                37889999998875            456789999765 345667889999999988773

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.04  E-value=2.4e-09  Score=100.93  Aligned_cols=84  Identities=23%  Similarity=0.356  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ....+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+|+++++.|+++.... ++++..+|+.++        
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l--------  225 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL--------  225 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc--------
Confidence            3556777888888999999999999999999886 789999999999999999988532 577888877553        


Q ss_pred             HHhhhcCCCCceEEEEcCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                             .+.||.|+++..++
T Consensus       226 -------~~~fD~Ivs~~~~e  239 (383)
T PRK11705        226 -------NGQFDRIVSVGMFE  239 (383)
T ss_pred             -------CCCCCEEEEeCchh
Confidence                   25799999876543

>TIGR00740 methyltransferase, putative

Probab=99.04  E-value=1.5e-09  Score=95.82  Aligned_cols=75  Identities=20%  Similarity=0.307  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ++.+|||+|||+|..+..+++.    +.+++|+|+++.|++.|+++++..   .+++++++|+.++++            
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------  120 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI------------  120 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC------------
Confidence            5679999999999999998874    578999999999999999988754   278999999998753            


Q ss_pred             CCCCceEEEEcCCCCC
Q 023240          214 SSSGFAKVVANIPFNI  229 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~  229 (285)
                        +.+|+|+++..++.
T Consensus       121 --~~~d~v~~~~~l~~  134 (239)
T TIGR00740       121 --KNASMVILNFTLQF  134 (239)
T ss_pred             --CCCCEEeeecchhh
Confidence              34788888766544

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.04  E-value=1.4e-09  Score=99.77  Aligned_cols=84  Identities=25%  Similarity=0.191  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEEccc
Q 023240          127 SEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDF  196 (285)
Q Consensus       127 ~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-------~~v~~~~gD~  196 (285)
                      ..+++.++.++...   ++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.|+++.+..       .++++..+|+
T Consensus       127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl  206 (315)
T PLN02585        127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL  206 (315)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence            35566677776542   5679999999999999999999999999999999999999997643       2567888886


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      .++               .+.||+|++.-
T Consensus       207 ~~l---------------~~~fD~Vv~~~  220 (315)
T PLN02585        207 ESL---------------SGKYDTVTCLD  220 (315)
T ss_pred             hhc---------------CCCcCEEEEcC
Confidence            543               25689888753

>PRK04148 hypothetical protein; Provisional

Probab=99.03  E-value=2.1e-09  Score=86.18  Aligned_cols=91  Identities=14%  Similarity=0.238  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      +.+.+.+.+...++.+|||||||+|. ++..|++.|.+|+++|+++.+++.++++     .++++.+|..+-++.     
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~-----   73 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLE-----   73 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHH-----
Confidence            45566666655567899999999997 8888998899999999999999999877     478999999986542     


Q ss_pred             HHhhhcCCCCceEEEE-cCCCCCcHHHHH
Q 023240          208 LFERRKSSSGFAKVVA-NIPFNISTDVIK  235 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~-n~P~~~~~~i~~  235 (285)
                            --..+|+|.+ +||.....++++
T Consensus        74 ------~y~~a~liysirpp~el~~~~~~   96 (134)
T PRK04148         74 ------IYKNAKLIYSIRPPRDLQPFILE   96 (134)
T ss_pred             ------HHhcCCEEEEeCCCHHHHHHHHH
Confidence                  1245799988 577766666655

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.02  E-value=1.5e-09  Score=90.46  Aligned_cols=149  Identities=19%  Similarity=0.250  Sum_probs=109.6

Q ss_pred             chHHHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhc---CC-CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCH
Q 023240          100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---VQ-EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQ  173 (285)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~---~~-~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~  173 (285)
                      .|.+-++.+++++-...-|||.  -....++.++.....   +. ...+|||+|||.|.+...|++.+  .+++|+|.++
T Consensus        24 ~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~  101 (227)
T KOG1271|consen   24 AYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE  101 (227)
T ss_pred             HHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH
Confidence            5666666677777777778884  344555666666554   33 34599999999999999999985  4699999999


Q ss_pred             HHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCC-----CCcHHHHHHhccCCCcee
Q 023240          174 HMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-----NISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       174 ~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~-----~~~~~i~~~l~~~g~~~~  245 (285)
                      .+++.|+...+..+   .|++.+.|+.+..+...-+|++   .+.+.+|+|=..|--     ..--+.+++++.++++|.
T Consensus       102 ~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv---lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv  178 (227)
T KOG1271|consen  102 KAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV---LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV  178 (227)
T ss_pred             HHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE---eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence            99999988777553   4999999999877766677777   677888888654332     122366788888888887


Q ss_pred             eeEeeehH
Q 023240          246 EVVLLLQE  253 (285)
Q Consensus       246 ~~~~~~~~  253 (285)
                      ...+-+..
T Consensus       179 ItSCN~T~  186 (227)
T KOG1271|consen  179 ITSCNFTK  186 (227)
T ss_pred             EEecCccH
Confidence            66665444

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=3e-09  Score=101.87  Aligned_cols=95  Identities=14%  Similarity=0.245  Sum_probs=76.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      +..+......+...+.+.++.+|||+|||+|..|..++..   +++|+++|+++.+++.++++++..+  +++++++|+.
T Consensus       219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~  298 (431)
T PRK14903        219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE  298 (431)
T ss_pred             EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence            3333444455556678888999999999999999999886   4699999999999999999998764  6899999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +++.           ...+.||.|+.|+|..
T Consensus       299 ~l~~-----------~~~~~fD~Vl~DaPCs  318 (431)
T PRK14903        299 RLTE-----------YVQDTFDRILVDAPCT  318 (431)
T ss_pred             hhhh-----------hhhccCCEEEECCCCC
Confidence            7641           1235699999999973

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.02  E-value=3.8e-09  Score=91.88  Aligned_cols=68  Identities=18%  Similarity=0.120  Sum_probs=54.2

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh--------------cCCCeEEEEccccc
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK  198 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~--------------~~~~v~~~~gD~~~  198 (285)
                      .+..+...++.+|||+|||.|..+..||++|.+|+|||+|+.+++.+.....              ...+|+++++|+.+
T Consensus        26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~  105 (213)
T TIGR03840        26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA  105 (213)
T ss_pred             HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence            4444433466799999999999999999999999999999999998644221              12368999999998


Q ss_pred             cc
Q 023240          199 CH  200 (285)
Q Consensus       199 ~~  200 (285)
                      ++
T Consensus       106 ~~  107 (213)
T TIGR03840       106 LT  107 (213)
T ss_pred             CC
Confidence            76

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.02  E-value=1.6e-09  Score=93.52  Aligned_cols=114  Identities=22%  Similarity=0.255  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~  198 (285)
                      ..+.....+...+....+++||||||++|+++++||+.   +++|+++|++++..+.|+++++..+   +|+++.||+.+
T Consensus        29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~  108 (205)
T PF01596_consen   29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE  108 (205)
T ss_dssp             HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred             cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence            34555555555555557889999999999999999985   6899999999999999999998764   89999999987


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH---HHhccCCCce
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~  244 (285)
                      .-..     +... ...++||+||.+-.-..-...+   ..++..|+.+
T Consensus       109 ~l~~-----l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvi  151 (205)
T PF01596_consen  109 VLPE-----LAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVI  151 (205)
T ss_dssp             HHHH-----HHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEE
T ss_pred             hHHH-----HHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeEE
Confidence            5210     1100 1236899999986533223322   3444444444

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.01  E-value=3.3e-09  Score=101.99  Aligned_cols=89  Identities=10%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~  201 (285)
                      ..........+.+.++.+|||+|||+|..+..+++.   +++|+|+|+++.+++.++++++..+  +++++++|+.+.+ 
T Consensus       236 d~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-  314 (445)
T PRK14904        236 NPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-  314 (445)
T ss_pred             CHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-
Confidence            334445556677778899999999999999988874   4699999999999999999998664  7899999998763 


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                  ....||.|+.++|..
T Consensus       315 ------------~~~~fD~Vl~D~Pcs  329 (445)
T PRK14904        315 ------------PEEQPDAILLDAPCT  329 (445)
T ss_pred             ------------cCCCCCEEEEcCCCC
Confidence                        235799999999863

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.01  E-value=3.7e-09  Score=92.26  Aligned_cols=85  Identities=26%  Similarity=0.287  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccc
Q 023240          128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (285)
Q Consensus       128 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~  201 (285)
                      .....++..+..   .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...   +++.+..+|+..   
T Consensus        47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---  123 (230)
T PRK07580         47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---  123 (230)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence            334445555542   45779999999999999999988889999999999999999987654   368899988322   


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                                  ..+.||+|+++-.+
T Consensus       124 ------------~~~~fD~v~~~~~l  137 (230)
T PRK07580        124 ------------LLGRFDTVVCLDVL  137 (230)
T ss_pred             ------------ccCCcCEEEEcchh
Confidence                        23679999886554

>PRK06922 hypothetical protein; Provisional

Probab=99.00  E-value=2.5e-09  Score=105.36  Aligned_cols=82  Identities=11%  Similarity=0.290  Sum_probs=65.9

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      +...++.+|||+|||+|..+..+++.  +.+|+|+|+++.|++.|+++.... .+++++++|+.+++..          .
T Consensus       414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~----------f  483 (677)
T PRK06922        414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS----------F  483 (677)
T ss_pred             hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc----------c
Confidence            34446789999999999999888875  679999999999999999886543 3788899999886511          1


Q ss_pred             CCCCceEEEEcCCCC
Q 023240          214 SSSGFAKVVANIPFN  228 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~  228 (285)
                      .+.+||+|+++++++
T Consensus       484 edeSFDvVVsn~vLH  498 (677)
T PRK06922        484 EKESVDTIVYSSILH  498 (677)
T ss_pred             CCCCEEEEEEchHHH
Confidence            346799999997765

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.00  E-value=4.1e-09  Score=101.04  Aligned_cols=98  Identities=13%  Similarity=0.247  Sum_probs=76.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      +.........+...+.+.++.+|||+|||+|..+..+++.   .++|+++|+++.+++.+++|++..+  +++++++|+.
T Consensus       234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~  313 (434)
T PRK14901        234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR  313 (434)
T ss_pred             EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence            3333444555666778888999999999999999999886   3589999999999999999998764  7999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +++....        ...+.||.|+.|+|.+
T Consensus       314 ~~~~~~~--------~~~~~fD~Vl~DaPCS  336 (434)
T PRK14901        314 NLLELKP--------QWRGYFDRILLDAPCS  336 (434)
T ss_pred             hcccccc--------cccccCCEEEEeCCCC
Confidence            7641000        0135799999999853

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.00  E-value=7.6e-10  Score=93.52  Aligned_cols=94  Identities=22%  Similarity=0.321  Sum_probs=70.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      .+.++..  ++.+|||+|||.|.+...|.+. +.+.+|||++++.+..+.++     .+.++++|+.+.-. +       
T Consensus         6 ~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~-~-------   70 (193)
T PF07021_consen    6 IIAEWIE--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLA-D-------   70 (193)
T ss_pred             HHHHHcC--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHh-h-------
Confidence            3444444  6789999999999999999875 88999999999999998877     68899999977421 1       


Q ss_pred             hhcCCCCceEEEEcCCC---CCcHHHHHHhccCCC
Q 023240          211 RRKSSSGFAKVVANIPF---NISTDVIKQLLPMGD  242 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~---~~~~~i~~~l~~~g~  242 (285)
                        .+.++||.||.+-..   ..+..+++.++.-|+
T Consensus        71 --f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr  103 (193)
T PF07021_consen   71 --FPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR  103 (193)
T ss_pred             --CCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence              466889999996443   233455555554433

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.99  E-value=3.8e-09  Score=97.73  Aligned_cols=90  Identities=14%  Similarity=0.251  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240          126 NSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (285)
                      .+.+...+++.+... ++.+|||||||+|.++..+++.  +.+|+++|.+++|++.|+++.. ..+++++.+|+.+.++ 
T Consensus        97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~-  174 (340)
T PLN02490         97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPF-  174 (340)
T ss_pred             hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCC-
Confidence            345555566666543 5679999999999999988875  4699999999999999998864 3478999999998764 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                 ..+.||+|+++..++
T Consensus       175 -----------~~~sFDvVIs~~~L~  189 (340)
T PLN02490        175 -----------PTDYADRYVSAGSIE  189 (340)
T ss_pred             -----------CCCceeEEEEcChhh
Confidence                       346799999986554

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.99  E-value=2.5e-09  Score=98.61  Aligned_cols=81  Identities=21%  Similarity=0.272  Sum_probs=63.7

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHH--hhc-CCCeEEEEcccccccchhhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER--FAS-IDQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~--~~~-~~~v~~~~gD~~~~~~~~~~~  206 (285)
                      ..+...+...++.+|||||||+|+++..++..+. .|+|+|.++.++..++..  ... ..+++++.+|+.+++.     
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-----  186 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-----  186 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-----
Confidence            4455566666789999999999999999998864 699999999998765432  221 2479999999988863     


Q ss_pred             hHHhhhcCCCCceEEEEc
Q 023240          207 SLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n  224 (285)
                              .+.||.|++.
T Consensus       187 --------~~~FD~V~s~  196 (322)
T PRK15068        187 --------LKAFDTVFSM  196 (322)
T ss_pred             --------cCCcCEEEEC
Confidence                    4679999985

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.99  E-value=3.7e-09  Score=92.23  Aligned_cols=88  Identities=26%  Similarity=0.371  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240          128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (285)
Q Consensus       128 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (285)
                      .+...+++.+..   ..+.+|||+|||+|.++..+++.+  .+++++|+++.+++.++++..  ++++++.+|+.+.++ 
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~-   94 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPL-   94 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCC-
Confidence            344444444432   345789999999999999999874  578999999999999998875  478999999988763 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                 ..+.||+|+++..++.
T Consensus        95 -----------~~~~fD~vi~~~~l~~  110 (240)
T TIGR02072        95 -----------EDSSFDLIVSNLALQW  110 (240)
T ss_pred             -----------CCCceeEEEEhhhhhh
Confidence                       3467999999866543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.99  E-value=5.2e-09  Score=91.31  Aligned_cols=76  Identities=18%  Similarity=0.125  Sum_probs=58.9

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh--------------cCCCeEEEEcccccccch
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVKCHIR  202 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~--------------~~~~v~~~~gD~~~~~~~  202 (285)
                      +...++.+|||+|||.|..++.||++|.+|+|||+++.+++.+.....              ...+|++.++|+.+++..
T Consensus        33 ~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         33 LALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             hCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            444466799999999999999999999999999999999998743211              124789999999987531


Q ss_pred             hhhhhHHhhhcCCCCceEEEE
Q 023240          203 SHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                                 ..+.||.|+-
T Consensus       113 -----------~~~~fd~v~D  122 (218)
T PRK13255        113 -----------DLADVDAVYD  122 (218)
T ss_pred             -----------cCCCeeEEEe
Confidence                       2246777773

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.98  E-value=3.6e-09  Score=94.14  Aligned_cols=88  Identities=28%  Similarity=0.302  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      .++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|+..++ +.    +...+.            .....|
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~------------~~~~~f  180 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLP------------QGDLKA  180 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEc------------cCCCCc
Confidence            4678999999999999998887765 59999999999999999987653 21    111111            111268


Q ss_pred             eEEEEcCCCCCcHHHH---HHhccCCCce
Q 023240          219 AKVVANIPFNISTDVI---KQLLPMGDIF  244 (285)
Q Consensus       219 D~Vv~n~P~~~~~~i~---~~l~~~g~~~  244 (285)
                      |+|++|........++   .+++.+|+.+
T Consensus       181 D~Vvani~~~~~~~l~~~~~~~LkpgG~l  209 (250)
T PRK00517        181 DVIVANILANPLLELAPDLARLLKPGGRL  209 (250)
T ss_pred             CEEEEcCcHHHHHHHHHHHHHhcCCCcEE
Confidence            9999997654433333   2334444544

>PRK08317 hypothetical protein; Provisional

Probab=98.98  E-value=6.3e-09  Score=90.59  Aligned_cols=89  Identities=24%  Similarity=0.330  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~  203 (285)
                      ...+.+++.+.+.++.+|||+|||+|..+..++..   .++++|+|+++.+++.++++... .++++++.+|+.+.++  
T Consensus         6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--   83 (241)
T PRK08317          6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF--   83 (241)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC--
Confidence            34456777788888899999999999999999876   36999999999999999988432 2489999999987763  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                ..+.||.|+++..+.
T Consensus        84 ----------~~~~~D~v~~~~~~~   98 (241)
T PRK08317         84 ----------PDGSFDAVRSDRVLQ   98 (241)
T ss_pred             ----------CCCCceEEEEechhh
Confidence                      346799999875543

>TIGR00452 methyltransferase, putative

Probab=98.98  E-value=7.4e-09  Score=94.99  Aligned_cols=94  Identities=16%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             cCCcccCCHHHHHH-----HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHH---HhhcCCCe
Q 023240          119 LGQHYMLNSEINDQ-----LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE---RFASIDQL  189 (285)
Q Consensus       119 ~g~~~~~~~~~~~~-----l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~---~~~~~~~v  189 (285)
                      +.+ +.++.+++..     ++..+...++++|||||||+|+++..++..++ .|+|||.++.|+..++.   .....+++
T Consensus        95 l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v  173 (314)
T TIGR00452        95 LSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRA  173 (314)
T ss_pred             ccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCe
Confidence            445 6677777544     44455566789999999999999999988865 79999999999876532   22223578


Q ss_pred             EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      .+..+|+.+++.             ...||.|+++--
T Consensus       174 ~~~~~~ie~lp~-------------~~~FD~V~s~gv  197 (314)
T TIGR00452       174 ILEPLGIEQLHE-------------LYAFDTVFSMGV  197 (314)
T ss_pred             EEEECCHHHCCC-------------CCCcCEEEEcch
Confidence            888888888752             247999998743

Known examples to date are restricted to the proteobacteria.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.97  E-value=2.5e-08  Score=87.26  Aligned_cols=75  Identities=17%  Similarity=0.293  Sum_probs=64.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--C------CEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEcc
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFASID-----QLKVLQED  195 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~------~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD  195 (285)
                      +-+..+..+.+.++.++||++||||.++..+.+.  .      .+|+.+|+|++|++.++++.++.+     .+.++++|
T Consensus        88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d  167 (296)
T KOG1540|consen   88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD  167 (296)
T ss_pred             HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence            4556778888888999999999999999998875  2      689999999999999999985432     48999999


Q ss_pred             cccccchh
Q 023240          196 FVKCHIRS  203 (285)
Q Consensus       196 ~~~~~~~~  203 (285)
                      ++++|+.+
T Consensus       168 AE~LpFdd  175 (296)
T KOG1540|consen  168 AEDLPFDD  175 (296)
T ss_pred             cccCCCCC
Confidence            99999754

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.97  E-value=2.1e-09  Score=105.34  Aligned_cols=105  Identities=14%  Similarity=0.270  Sum_probs=79.1

Q ss_pred             ccCCcccCCHHHHHHHHHHhcCC-------CCCEEEEEcCcccHHHHHHHHhC----------CEEEEEeCCHHHHHHHH
Q 023240          118 SLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLVR  180 (285)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~t~~la~~~----------~~V~giD~~~~~v~~a~  180 (285)
                      ..|+ |+|++.+++.|++.+...       ...+|||.|||+|.+...++...          .+++|+|+++.++..|+
T Consensus         2 ~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~   80 (524)
T TIGR02987         2 AYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK   80 (524)
T ss_pred             CCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence            3577 999999999999987432       34589999999999998887531          47899999999999999


Q ss_pred             HHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          181 ERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       181 ~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .++...+  .+.+.++|........     ..  ...+.||+||+||||...
T Consensus        81 ~~l~~~~~~~~~i~~~d~l~~~~~~-----~~--~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        81 KLLGEFALLEINVINFNSLSYVLLN-----IE--SYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HHHhhcCCCCceeeecccccccccc-----cc--cccCcccEEEeCCCcccc
Confidence            9987654  5667777766432210     00  123579999999999754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.97  E-value=1.3e-09  Score=90.39  Aligned_cols=80  Identities=21%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      ..|+|+.||.|.-++.+|+...+|++||+|+..++.|+.|++-++   +|+++++|+.+....-         .....+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---------~~~~~~D   71 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---------KSNKIFD   71 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc---------ccccccc
Confidence            369999999999999999998899999999999999999998775   8999999998863210         1111279


Q ss_pred             EEEEcCCCCCcH
Q 023240          220 KVVANIPFNIST  231 (285)
Q Consensus       220 ~Vv~n~P~~~~~  231 (285)
                      .|+.+||+..++
T Consensus        72 ~vFlSPPWGGp~   83 (163)
T PF09445_consen   72 VVFLSPPWGGPS   83 (163)
T ss_dssp             EEEE---BSSGG
T ss_pred             EEEECCCCCCcc
Confidence            999999997554

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.96  E-value=1.9e-09  Score=91.42  Aligned_cols=82  Identities=22%  Similarity=0.312  Sum_probs=61.6

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+....-.++||+|||.|.+|..||.+..+++++|+++.+++.|+++....++|+++++|+.+.             .+.
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-------------~P~  104 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-------------WPE  104 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-------------CCC
Confidence            4554455789999999999999999998899999999999999999998888999999999775             345


Q ss_pred             CCceEEEEc-CCCCCc
Q 023240          216 SGFAKVVAN-IPFNIS  230 (285)
Q Consensus       216 ~~~D~Vv~n-~P~~~~  230 (285)
                      +.||+||.. .-|+..
T Consensus       105 ~~FDLIV~SEVlYYL~  120 (201)
T PF05401_consen  105 GRFDLIVLSEVLYYLD  120 (201)
T ss_dssp             S-EEEEEEES-GGGSS
T ss_pred             CCeeEEEEehHhHcCC
Confidence            789987654 556554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=3.7e-09  Score=92.71  Aligned_cols=105  Identities=23%  Similarity=0.341  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~  200 (285)
                      |.-...++..+.+.++.+|+|.|+|+|.++..||..   .++|+++|+.++..+.|++|++..+   ++++..+|+.+.-
T Consensus        80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~  159 (256)
T COG2519          80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence            444567888999999999999999999999999975   3699999999999999999998753   5999999998864


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCC--CCCcHHHHHHhccCCCce
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P--~~~~~~i~~~l~~~g~~~  244 (285)
                                   ....+|.||.++|  ++....+.+.|.+++...
T Consensus       160 -------------~~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~  192 (256)
T COG2519         160 -------------DEEDVDAVFLDLPDPWNVLEHVSDALKPGGVVV  192 (256)
T ss_pred             -------------cccccCEEEEcCCChHHHHHHHHHHhCCCcEEE
Confidence                         3348999999976  555556556666654433

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.95  E-value=1.2e-08  Score=89.02  Aligned_cols=89  Identities=21%  Similarity=0.312  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~  199 (285)
                      .......++..+...++.+|||+|||+|..+..++...   .+++++|+++.+++.+++++...   ++++++.+|+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            34566677777777777899999999999999998874   79999999999999999998652   4789999999887


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      +.            ..+.||+|+++.-
T Consensus       116 ~~------------~~~~~D~I~~~~~  130 (239)
T PRK00216        116 PF------------PDNSFDAVTIAFG  130 (239)
T ss_pred             CC------------CCCCccEEEEecc
Confidence            53            3467899987543

>PRK06202 hypothetical protein; Provisional

Probab=98.95  E-value=4.8e-09  Score=92.14  Aligned_cols=78  Identities=23%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~----~--~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .++.+|||+|||+|.++..+++.    +  .+|+|+|++++|++.|+++... .++++..+|+..++.            
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~------------  125 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVA------------  125 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccc------------
Confidence            46679999999999999888752    3  4999999999999999988643 367777777766642            


Q ss_pred             CCCCceEEEEcCCCCCc
Q 023240          214 SSSGFAKVVANIPFNIS  230 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~~  230 (285)
                      ...+||+|++|..++..
T Consensus       126 ~~~~fD~V~~~~~lhh~  142 (232)
T PRK06202        126 EGERFDVVTSNHFLHHL  142 (232)
T ss_pred             cCCCccEEEECCeeecC
Confidence            34679999999776544

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.94  E-value=3.4e-09  Score=91.05  Aligned_cols=104  Identities=19%  Similarity=0.320  Sum_probs=67.1

Q ss_pred             CCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHhhcCC--
Q 023240          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID--  187 (285)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~--~~~~V~giD~~~~~v~~a~~~~~~~~--  187 (285)
                      +..+.-.+...|+.+....++..-.-...++++|+|+.||.|++++.+|+  .+..|+++|+||.+++.+++|++.+.  
T Consensus        72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~  151 (200)
T PF02475_consen   72 GIRFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE  151 (200)
T ss_dssp             TEEEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T
T ss_pred             CEEEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC
Confidence            44333334444444443333322222345789999999999999999998  47799999999999999999998763  


Q ss_pred             -CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       188 -~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                       ++.++++|+.++.             ....+|.|++|+|..
T Consensus       152 ~~i~~~~~D~~~~~-------------~~~~~drvim~lp~~  180 (200)
T PF02475_consen  152 NRIEVINGDAREFL-------------PEGKFDRVIMNLPES  180 (200)
T ss_dssp             TTEEEEES-GGG----------------TT-EEEEEE--TSS
T ss_pred             CeEEEEcCCHHHhc-------------CccccCEEEECChHH
Confidence             7899999999874             357899999998854

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.94  E-value=1.3e-08  Score=83.76  Aligned_cols=102  Identities=23%  Similarity=0.406  Sum_probs=86.0

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCCCeE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLK  190 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~~v~  190 (285)
                      ...+.-|....++.-+++.|.....+..|.-|||+|.|||.+|.++.+++   ..+++||.|++.+..+.+.+   +.++
T Consensus        21 ~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~   97 (194)
T COG3963          21 DNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVN   97 (194)
T ss_pred             cCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCcc
Confidence            33445677778888999999999999999999999999999999999885   48999999999999999886   5788


Q ss_pred             EEEccccccc--chhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          191 VLQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       191 ~~~gD~~~~~--~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      +++||+.++.  ..+         .....||.||+..|+
T Consensus        98 ii~gda~~l~~~l~e---------~~gq~~D~viS~lPl  127 (194)
T COG3963          98 IINGDAFDLRTTLGE---------HKGQFFDSVISGLPL  127 (194)
T ss_pred             ccccchhhHHHHHhh---------cCCCeeeeEEecccc
Confidence            9999998875  221         456779999998775

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.92  E-value=1.3e-08  Score=89.30  Aligned_cols=91  Identities=19%  Similarity=0.193  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhh
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~  204 (285)
                      .+..+..+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+ +++++.+|+.+.+.   
T Consensus        33 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---  109 (233)
T PRK05134         33 NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA---  109 (233)
T ss_pred             hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh---
Confidence            34445566666656678899999999999999999888899999999999999998876443 57778888776541   


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                              ...+.||+|+++..+
T Consensus       110 --------~~~~~fD~Ii~~~~l  124 (233)
T PRK05134        110 --------EHPGQFDVVTCMEML  124 (233)
T ss_pred             --------hcCCCccEEEEhhHh
Confidence                    134679999886443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.91  E-value=1.5e-08  Score=96.96  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-Ce--EEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QL--KVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v--~~~~gD~~  197 (285)
                      +..+......+...+.+.++.+|||+|||+|..+..+++.  +++|+|+|+++.+++.+++|++..+ .+  .+..+|..
T Consensus       220 ~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~  299 (426)
T TIGR00563       220 VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGR  299 (426)
T ss_pred             EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence            3444455667777888888999999999999999999986  3799999999999999999998765 33  34667765


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ..+..          .....||.|+.++|.+
T Consensus       300 ~~~~~----------~~~~~fD~VllDaPcS  320 (426)
T TIGR00563       300 GPSQW----------AENEQFDRILLDAPCS  320 (426)
T ss_pred             ccccc----------ccccccCEEEEcCCCC
Confidence            54310          1346799999999865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.91  E-value=5.6e-09  Score=89.49  Aligned_cols=86  Identities=19%  Similarity=0.305  Sum_probs=68.0

Q ss_pred             ccCCHHHHHHHHHHhcCCC--CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc-c
Q 023240          123 YMLNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-C  199 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~--~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~-~  199 (285)
                      ..+..++..+.++.+....  +.-|||||||+|.++..+...|...+|+|+|+.|++.|.+.--   .-.++.+|+-+ +
T Consensus        30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~---egdlil~DMG~Gl  106 (270)
T KOG1541|consen   30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL---EGDLILCDMGEGL  106 (270)
T ss_pred             eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh---hcCeeeeecCCCC
Confidence            3455777888888887765  6689999999999999999999999999999999999996321   13577777654 3


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEE
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                      |            ..++.||.+|+
T Consensus       107 p------------frpGtFDg~IS  118 (270)
T KOG1541|consen  107 P------------FRPGTFDGVIS  118 (270)
T ss_pred             C------------CCCCccceEEE
Confidence            4            35688998887

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=8.3e-09  Score=85.94  Aligned_cols=82  Identities=21%  Similarity=0.290  Sum_probs=67.5

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhh
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      +....+..++|||||+|..+..+++.   +....+.|+|+++++..++.++.++ ++..++.|....             
T Consensus        39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-------------  105 (209)
T KOG3191|consen   39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-------------  105 (209)
T ss_pred             HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-------------
Confidence            33334788999999999999999886   3578999999999999998887665 788999998775             


Q ss_pred             cCCCCceEEEEcCCCCCcH
Q 023240          213 KSSSGFAKVVANIPFNIST  231 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~  231 (285)
                      ...++.|+++.||||-..+
T Consensus       106 l~~~~VDvLvfNPPYVpt~  124 (209)
T KOG3191|consen  106 LRNESVDVLVFNPPYVPTS  124 (209)
T ss_pred             hccCCccEEEECCCcCcCC
Confidence            2448899999999996543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.90  E-value=2.2e-08  Score=86.53  Aligned_cols=89  Identities=17%  Similarity=0.237  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (285)
                      ......++..+...++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++....++++++.+|+.+.++  
T Consensus        25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--  102 (223)
T TIGR01934        25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF--  102 (223)
T ss_pred             HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC--
Confidence            3445566666666678899999999999999998873   48999999999999999987633479999999988763  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                                ..+.||+|+++..+
T Consensus       103 ----------~~~~~D~i~~~~~~  116 (223)
T TIGR01934       103 ----------EDNSFDAVTIAFGL  116 (223)
T ss_pred             ----------CCCcEEEEEEeeee
Confidence                      34579999886443

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.90  E-value=2.2e-08  Score=84.57  Aligned_cols=98  Identities=24%  Similarity=0.384  Sum_probs=77.8

Q ss_pred             cCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccc
Q 023240          124 MLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~  197 (285)
                      .+...+.+.+..++..  ..+.++||+.+|+|.+++..+.+|+ .++.||.|..++..+++|++..   ++++++..|+.
T Consensus        24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~  103 (187)
T COG0742          24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL  103 (187)
T ss_pred             CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence            3445666777777765  4789999999999999999999965 8999999999999999998754   48899999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      ....         .......||+|+.+|||+..
T Consensus       104 ~~L~---------~~~~~~~FDlVflDPPy~~~  127 (187)
T COG0742         104 RALK---------QLGTREPFDLVFLDPPYAKG  127 (187)
T ss_pred             HHHH---------hcCCCCcccEEEeCCCCccc
Confidence            4311         00223359999999999833

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.90  E-value=6.5e-09  Score=92.19  Aligned_cols=117  Identities=13%  Similarity=0.115  Sum_probs=83.9

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~  197 (285)
                      ...+.....+...+...++++|||||+++|+++++||..   +++|+++|.+++..+.|+++++..+   +|+++.||+.
T Consensus        62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~  141 (247)
T PLN02589         62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL  141 (247)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence            445677777777777777889999999999999999975   5799999999999999999998764   8999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH---HHHHHhccCCCcee
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFS  245 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~---~i~~~l~~~g~~~~  245 (285)
                      +.-..     +...-...++||+||.+---....   +.+..++..|+++.
T Consensus       142 e~L~~-----l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv  187 (247)
T PLN02589        142 PVLDQ-----MIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIG  187 (247)
T ss_pred             HHHHH-----HHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEE
Confidence            75211     000000136899999974422222   33345556666553

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.88  E-value=9.1e-09  Score=87.93  Aligned_cols=93  Identities=23%  Similarity=0.346  Sum_probs=67.6

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc-ccchhhhhhHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CHIRSHMLSLF  209 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~-~~~~~~~~d~~  209 (285)
                      .+.+.+.  ++.+|||+|||+|.++..+++. +..++|+|+++++++.++.+     +++++.+|+.+ .+.        
T Consensus         6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~--------   70 (194)
T TIGR02081         6 SILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEA--------   70 (194)
T ss_pred             HHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccc--------
Confidence            3444443  5679999999999999998765 56899999999999998753     57889999875 221        


Q ss_pred             hhhcCCCCceEEEEcCCCCCc---HHHHHHhccCCC
Q 023240          210 ERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMGD  242 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~~~---~~i~~~l~~~g~  242 (285)
                         ...++||+|+++.+++..   ..+++.+...++
T Consensus        71 ---~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        71 ---FPDKSFDYVILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             ---cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence               234679999999876544   344555554443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.86  E-value=2.4e-08  Score=86.55  Aligned_cols=73  Identities=21%  Similarity=0.303  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++.+|||||||+|.++..+++.   +++|+|||+++ +        ...++++++++|+.+.+..+...+-    ...+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~----~~~~  116 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLER----VGDS  116 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHH----hCCC
Confidence            56789999999999999999886   25899999998 1        1225799999999886421111111    2357


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      .+|+|++|+
T Consensus       117 ~~D~V~S~~  125 (209)
T PRK11188        117 KVQVVMSDM  125 (209)
T ss_pred             CCCEEecCC
Confidence            799999986

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.86  E-value=1.3e-08  Score=94.55  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=80.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--------------------------------------
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--------------------------------------  164 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~--------------------------------------  164 (285)
                      -...+.++..|+....+.++..++|.-||+|.+.+..|..+.                                      
T Consensus       173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~  252 (381)
T COG0116         173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK  252 (381)
T ss_pred             CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence            455678888999999998888999999999999988776542                                      


Q ss_pred             ---EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          165 ---TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       165 ---~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                         .++|+|+|+.+++.|+.|....+   -|++..+|+.++..            +...+|+||+||||..
T Consensus       253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------------~~~~~gvvI~NPPYGe  311 (381)
T COG0116         253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE------------PLEEYGVVISNPPYGE  311 (381)
T ss_pred             ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC------------CCCcCCEEEeCCCcch
Confidence               37799999999999999998764   79999999999852            2267899999999974

>PRK00811 spermidine synthase; Provisional

Probab=98.86  E-value=2e-08  Score=91.04  Aligned_cols=74  Identities=19%  Similarity=0.319  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .+++||+||||+|.++..+++. + .+|++||+|+.+++.|++.+..       .++++++.+|+.+.-.          
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~----------  145 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA----------  145 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh----------
Confidence            5679999999999999999886 3 5899999999999999998752       3589999999987521          


Q ss_pred             hcCCCCceEEEEcC
Q 023240          212 RKSSSGFAKVVANI  225 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~  225 (285)
                       ...++||+||++.
T Consensus       146 -~~~~~yDvIi~D~  158 (283)
T PRK00811        146 -ETENSFDVIIVDS  158 (283)
T ss_pred             -hCCCcccEEEECC
Confidence             2346899999984

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.85  E-value=2.1e-08  Score=94.50  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=81.7

Q ss_pred             ccCCcccCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCC--CeEEE
Q 023240          118 SLGQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID--QLKVL  192 (285)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~--~v~~~  192 (285)
                      +|+-+....+++...+++.+... ++.+|||++||+|..++.++.. + .+|+++|+++.+++.+++|++.++  ++++.
T Consensus        33 Fyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~  112 (382)
T PRK04338         33 FYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVF  112 (382)
T ss_pred             eeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Confidence            45556666677777777776533 3468999999999999999876 3 389999999999999999998664  67789


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHH
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~  236 (285)
                      ++|+.++.            ...+.||+|+.||| ....+++..
T Consensus       113 ~~Da~~~l------------~~~~~fD~V~lDP~-Gs~~~~l~~  143 (382)
T PRK04338        113 NKDANALL------------HEERKFDVVDIDPF-GSPAPFLDS  143 (382)
T ss_pred             hhhHHHHH------------hhcCCCCEEEECCC-CCcHHHHHH
Confidence            99997652            11356999999987 665666554

>PLN03075 nicotianamine synthase; Provisional

Probab=98.83  E-value=3.6e-08  Score=89.31  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=62.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHH-HHHHHH-h--CCEEEEEeCCHHHHHHHHHHhhc-C---CCeEEEEccccccc
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSL-TNVLLN-A--GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCH  200 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~-t~~la~-~--~~~V~giD~~~~~v~~a~~~~~~-~---~~v~~~~gD~~~~~  200 (285)
                      .--.++..+...++++|+|||||.|.+ ++.+++ .  +.+++++|+|+++++.|++.+.. .   ++++|..+|+.+..
T Consensus       111 lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~  190 (296)
T PLN03075        111 LEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT  190 (296)
T ss_pred             HHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence            333444444444788999999997754 444443 2  56899999999999999999854 2   37999999998853


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEc
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                                  ...+.||+|++.
T Consensus       191 ------------~~l~~FDlVF~~  202 (296)
T PLN03075        191 ------------ESLKEYDVVFLA  202 (296)
T ss_pred             ------------cccCCcCEEEEe
Confidence                        234679999998

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.82  E-value=2.8e-08  Score=100.61  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=78.5

Q ss_pred             ccCCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh---------------------------------------
Q 023240          123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA---------------------------------------  162 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~---------------------------------------  162 (285)
                      -.+.+.++..|+....+ .++..++|.+||+|.+.+..|..                                       
T Consensus       171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            34567888888888877 56789999999999998776542                                       


Q ss_pred             -----CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          163 -----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       163 -----~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                           ..+++|+|+++.+++.|+.|+..++   .+++..+|+.+++..          ...+.+|+||+||||...
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~----------~~~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP----------LPKGPTGLVISNPPYGER  316 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc----------cccCCCCEEEECCCCcCc
Confidence                 1269999999999999999998764   589999999987532          123568999999999643

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.82  E-value=2.5e-08  Score=86.74  Aligned_cols=90  Identities=19%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccc
Q 023240          126 NSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (285)
Q Consensus       126 ~~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~  199 (285)
                      ++..+..+.+.+..    ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++...+  ++++..+|+.+.
T Consensus        26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~  105 (224)
T TIGR01983        26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL  105 (224)
T ss_pred             hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence            33344555555542    347799999999999999998888899999999999999999887543  588999998876


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      +.           .....||+|+++-.
T Consensus       106 ~~-----------~~~~~~D~i~~~~~  121 (224)
T TIGR01983       106 AE-----------KGAKSFDVVTCMEV  121 (224)
T ss_pred             hc-----------CCCCCccEEEehhH
Confidence            53           12367999998644

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.78  E-value=2.8e-08  Score=86.54  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             CEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++|||||||+|..+..+++.  +.+|+|+|+++.+++.+++++...   ++++++.+|+.+.+.             .+.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------------~~~   67 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------------PDT   67 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------------CCC
Confidence            37999999999999999886  479999999999999999988653   378999999876542             247


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      ||+|+++-
T Consensus        68 fD~I~~~~   75 (224)
T smart00828       68 YDLVFGFE   75 (224)
T ss_pred             CCEeehHH
Confidence            99999853

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.78  E-value=8.6e-10  Score=83.69  Aligned_cols=75  Identities=28%  Similarity=0.374  Sum_probs=47.6

Q ss_pred             EEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEE
Q 023240          146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (285)
Q Consensus       146 LDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~V  221 (285)
                      ||||||+|.++..+++.  ..+++++|+|+.|++.|++++....  +...+..+..+....          ....+||+|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~fD~V   70 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY----------DPPESFDLV   70 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C----------CC----SEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc----------cccccccee
Confidence            79999999999999888  7899999999999999988887654  334444444333210          122589999


Q ss_pred             EEcCCCCCc
Q 023240          222 VANIPFNIS  230 (285)
Q Consensus       222 v~n~P~~~~  230 (285)
                      ++.-.++..
T Consensus        71 ~~~~vl~~l   79 (99)
T PF08242_consen   71 VASNVLHHL   79 (99)
T ss_dssp             EEE-TTS--
T ss_pred             hhhhhHhhh
Confidence            998666554

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK04457 spermidine synthase; Provisional

Probab=98.78  E-value=4.3e-08  Score=87.92  Aligned_cols=86  Identities=15%  Similarity=0.246  Sum_probs=65.9

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       129 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (285)
                      ..+.|+..+. ..++.+|||||||+|.++..+++.  +.+|+++|+++++++.|++++...   ++++++.+|+.+.-. 
T Consensus        53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~-  131 (262)
T PRK04457         53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA-  131 (262)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH-
Confidence            3444444333 335679999999999999999876  579999999999999999997642   589999999877521 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                                .....||+|+.|.
T Consensus       132 ----------~~~~~yD~I~~D~  144 (262)
T PRK04457        132 ----------VHRHSTDVILVDG  144 (262)
T ss_pred             ----------hCCCCCCEEEEeC
Confidence                      1235799999863

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=2.4e-08  Score=94.99  Aligned_cols=122  Identities=14%  Similarity=0.081  Sum_probs=94.9

Q ss_pred             CCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeE
Q 023240          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLK  190 (285)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~  190 (285)
                      +.+..+|+.|....+-+...+-++++...+..++|+.||||.+++.+|+...+|+|||+++.+++.|+.|...++  |.+
T Consensus       355 iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~  434 (534)
T KOG2187|consen  355 ISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNAT  434 (534)
T ss_pred             ECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcccee
Confidence            456667888888888888899999999989999999999999999999998999999999999999999998876  999


Q ss_pred             EEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH-HHHHhccC
Q 023240          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLPM  240 (285)
Q Consensus       191 ~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~-i~~~l~~~  240 (285)
                      +++|-++++-..     ++ ...-+..-.++|.+||...... ++++|...
T Consensus       435 Fi~gqaE~~~~s-----l~-~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~  479 (534)
T KOG2187|consen  435 FIVGQAEDLFPS-----LL-TPCCDSETLVAIIDPPRKGLHMKVIKALRAY  479 (534)
T ss_pred             eeecchhhccch-----hc-ccCCCCCceEEEECCCcccccHHHHHHHHhc
Confidence            999977665321     00 0011122248899999866554 44555543

>PTZ00146 fibrillarin; Provisional

Probab=98.77  E-value=6.5e-08  Score=87.37  Aligned_cols=99  Identities=15%  Similarity=0.146  Sum_probs=68.6

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc-chhhhhhHHhhh
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH-IRSHMLSLFERR  212 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~-~~~~~~d~~~~~  212 (285)
                      +.+.++.+|||+|||+|+.+..++..   ...|+++|+++++.+.+....+...||.++.+|+.... +.          
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~----------  197 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR----------  197 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh----------
Confidence            44668899999999999999999987   25899999999876555554443468999999986421 10          


Q ss_pred             cCCCCceEEEEcCCCCCcHHH----HHHhccCCCcee
Q 023240          213 KSSSGFAKVVANIPFNISTDV----IKQLLPMGDIFS  245 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~~i----~~~l~~~g~~~~  245 (285)
                      .....+|+|+++...-....+    +.+++.+++.+.
T Consensus       198 ~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~v  234 (293)
T PTZ00146        198 MLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFI  234 (293)
T ss_pred             cccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEE
Confidence            122468999998753222212    244566666553

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.77  E-value=2.4e-08  Score=91.96  Aligned_cols=94  Identities=17%  Similarity=0.261  Sum_probs=75.5

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ++++...  +|.+|+|..||.|++++.+|..+.. |+++|+||.+++.+++|++.|+   .+..++||+.++..      
T Consensus       181 Rva~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------  252 (341)
T COG2520         181 RVAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------  252 (341)
T ss_pred             HHHhhhc--CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------
Confidence            3444433  5999999999999999999999764 9999999999999999999774   58999999999863      


Q ss_pred             HHhhhcCCCCceEEEEcCCCC---CcHHHHHHhcc
Q 023240          208 LFERRKSSSGFAKVVANIPFN---ISTDVIKQLLP  239 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~---~~~~i~~~l~~  239 (285)
                            ..+.+|.|++|.|..   .....++.+..
T Consensus       253 ------~~~~aDrIim~~p~~a~~fl~~A~~~~k~  281 (341)
T COG2520         253 ------ELGVADRIIMGLPKSAHEFLPLALELLKD  281 (341)
T ss_pred             ------ccccCCEEEeCCCCcchhhHHHHHHHhhc
Confidence                  337799999998864   33444555555

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.73  E-value=4.8e-08  Score=88.74  Aligned_cols=92  Identities=13%  Similarity=0.309  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (285)
                      |-++..+++.+.+.++..++|.+||.|..+..+++.   .++|+|+|.|+++++.|++++...++++++++|+.++... 
T Consensus         5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~-   83 (296)
T PRK00050          5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV-   83 (296)
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-
Confidence            556778888888888899999999999999999987   3799999999999999999876545899999999887421 


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                           +.  .....+|.|+.++-
T Consensus        84 -----l~--~~~~~vDgIl~DLG   99 (296)
T PRK00050         84 -----LA--EGLGKVDGILLDLG   99 (296)
T ss_pred             -----HH--cCCCccCEEEECCC
Confidence                 10  11126888888654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.72  E-value=6e-08  Score=82.45  Aligned_cols=75  Identities=17%  Similarity=0.379  Sum_probs=54.1

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          138 AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+.++.+|||+|||+|.++..+++.   ..+|+++|+++.+         ..++++++++|+.+.+..+.....    ..
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~----~~   95 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRER----VG   95 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHH----hC
Confidence            4457889999999999999988876   3479999999865         124788999998775421111000    23


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+.+|+|+++.
T Consensus        96 ~~~~D~V~~~~  106 (188)
T TIGR00438        96 DDKVDVVMSDA  106 (188)
T ss_pred             CCCccEEEcCC
Confidence            45799999984

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.69  E-value=1.7e-07  Score=85.77  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=59.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccccc
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~  200 (285)
                      ....+++.+...++.+|||||||+|.++..+++.  +.+++++|. +.+++.++++++..   ++++++.+|+.+.+
T Consensus       137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~  212 (306)
T TIGR02716       137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES  212 (306)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence            4556777777777889999999999999999987  468999997 78999999988754   37999999998754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.69  E-value=1.4e-07  Score=77.09  Aligned_cols=72  Identities=22%  Similarity=0.283  Sum_probs=54.3

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ..++.+|||||||+|.++..+++.+.+++|+|+++.+++.        .++.....+....+            ...+.|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~------------~~~~~f   79 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPP------------FPDGSF   79 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHH------------CHSSSE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhh------------ccccch
Confidence            4567899999999999999998889999999999999998        13333333333332            345789


Q ss_pred             eEEEEcCCCCCc
Q 023240          219 AKVVANIPFNIS  230 (285)
Q Consensus       219 D~Vv~n~P~~~~  230 (285)
                      |+|+++--++..
T Consensus        80 D~i~~~~~l~~~   91 (161)
T PF13489_consen   80 DLIICNDVLEHL   91 (161)
T ss_dssp             EEEEEESSGGGS
T ss_pred             hhHhhHHHHhhc
Confidence            999998554433

...

>TIGR03438 probable methyltransferase

Probab=98.67  E-value=2.1e-07  Score=85.04  Aligned_cols=67  Identities=25%  Similarity=0.364  Sum_probs=53.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC-C--CeEEEEcccccc
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-D--QLKVLQEDFVKC  199 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~-~--~v~~~~gD~~~~  199 (285)
                      ..+...+.  ++.+|||+|||+|..+..+++.   +.+|+++|+|++|++.|++++... +  ++..+++|+.+.
T Consensus        55 ~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        55 DEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            33444443  5679999999999999999877   579999999999999999887642 3  467789999863

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.66  E-value=7.8e-08  Score=90.36  Aligned_cols=95  Identities=18%  Similarity=0.249  Sum_probs=74.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~  197 (285)
                      ++.+....+..+....  .|++||++.|=||.++...|..|+ +|++||.|..+++.|++|++.|+    .+.++++|+.
T Consensus       201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf  278 (393)
T COG1092         201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF  278 (393)
T ss_pred             eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence            3444444444444433  389999999999999999999987 99999999999999999999774    5799999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      ++--...        ..+.+||+||.+||-
T Consensus       279 ~~l~~~~--------~~g~~fDlIilDPPs  300 (393)
T COG1092         279 KWLRKAE--------RRGEKFDLIILDPPS  300 (393)
T ss_pred             HHHHHHH--------hcCCcccEEEECCcc
Confidence            7632110        345589999999993

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.65  E-value=1.1e-07  Score=85.35  Aligned_cols=73  Identities=14%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcCcccH----HHHHHHHh-------CCEEEEEeCCHHHHHHHHHHhhc-----------------------
Q 023240          140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFAS-----------------------  185 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~----~t~~la~~-------~~~V~giD~~~~~v~~a~~~~~~-----------------------  185 (285)
                      .++.+|||+|||+|.    +++.+++.       +.+|+|+|+|+.|++.|++..-.                       
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999996    45555543       35899999999999999985310                       


Q ss_pred             ------CCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240          186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       186 ------~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                            ..+|++.++|+.+.++            ..+.||+|++.
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~------------~~~~fD~I~cr  210 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESP------------PLGDFDLIFCR  210 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCC------------ccCCCCEEEec
Confidence                  0268889999988653            34679999994

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK03612 spermidine synthase; Provisional

Probab=98.65  E-value=1.2e-07  Score=92.86  Aligned_cols=78  Identities=21%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHh--h-------cCCCeEEEEcccccccchhhhhhH
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~--~-------~~~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      .++++|||||||+|..+..+++..  .+|+++|+|+++++.++++.  .       ..++++++.+|+.+.-.       
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~-------  368 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR-------  368 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH-------
Confidence            457899999999999999988873  69999999999999999842  1       12589999999987421       


Q ss_pred             HhhhcCCCCceEEEEcCCCC
Q 023240          209 FERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~  228 (285)
                          ...++||+|++|+|..
T Consensus       369 ----~~~~~fDvIi~D~~~~  384 (521)
T PRK03612        369 ----KLAEKFDVIIVDLPDP  384 (521)
T ss_pred             ----hCCCCCCEEEEeCCCC
Confidence                2346899999998754

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.65  E-value=1.4e-07  Score=69.78  Aligned_cols=75  Identities=27%  Similarity=0.448  Sum_probs=60.8

Q ss_pred             EEEEEcCcccHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~-~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      +|+|+|||.|..+..++. ...+++++|.++.++..+++.....  .+++++.+|+.+...           ...+.+|+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~   69 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-----------EADESFDV   69 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----------ccCCceEE
Confidence            489999999999999987 4679999999999999998543322  478999999887642           13467999


Q ss_pred             EEEcCCCCC
Q 023240          221 VVANIPFNI  229 (285)
Q Consensus       221 Vv~n~P~~~  229 (285)
                      |+.+++++.
T Consensus        70 i~~~~~~~~   78 (107)
T cd02440          70 IISDPPLHH   78 (107)
T ss_pred             EEEccceee
Confidence            999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK01581 speE spermidine synthase; Validated

Probab=98.64  E-value=1.4e-07  Score=87.60  Aligned_cols=78  Identities=21%  Similarity=0.206  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHh--h-------cCCCeEEEEcccccccchhhhhh
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~--~-------~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ...+.+||+||||+|..+..+++..  .+|++||+|+++++.|++..  .       ..++++++.+|+.++-.      
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~------  221 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS------  221 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH------
Confidence            3457899999999999988888763  69999999999999999621  1       13589999999987531      


Q ss_pred             HHhhhcCCCCceEEEEcCCC
Q 023240          208 LFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~  227 (285)
                           ...+.||+||.++|.
T Consensus       222 -----~~~~~YDVIIvDl~D  236 (374)
T PRK01581        222 -----SPSSLYDVIIIDFPD  236 (374)
T ss_pred             -----hcCCCccEEEEcCCC
Confidence                 234679999999764

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.64  E-value=1.2e-07  Score=82.70  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=57.1

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc--------------CCCeEE
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKV  191 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~--------------~~~v~~  191 (285)
                      ++.+.+.+-. +...++.+||..|||.|.-...||+.|.+|+|+|+++.+++.+.+....              .++|++
T Consensus        23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            3444444443 6666778999999999999999999999999999999999998443221              136899


Q ss_pred             EEcccccccc
Q 023240          192 LQEDFVKCHI  201 (285)
Q Consensus       192 ~~gD~~~~~~  201 (285)
                      .+||+.+++.
T Consensus       102 ~~gDfF~l~~  111 (218)
T PF05724_consen  102 YCGDFFELPP  111 (218)
T ss_dssp             EES-TTTGGG
T ss_pred             EEcccccCCh
Confidence            9999999864

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PLN02366 spermidine synthase

Probab=98.63  E-value=3.7e-07  Score=83.64  Aligned_cols=77  Identities=13%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .++++||+||||.|.++..+++.  ..+|+.+|+++.+++.|++.+..      .++++++.+|+.+.--         .
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~---------~  160 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK---------N  160 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh---------h
Confidence            45789999999999999999887  35899999999999999998753      2589999999876421         0


Q ss_pred             hcCCCCceEEEEcCC
Q 023240          212 RKSSSGFAKVVANIP  226 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P  226 (285)
                       ...+.||+||.+.+
T Consensus       161 -~~~~~yDvIi~D~~  174 (308)
T PLN02366        161 -APEGTYDAIIVDSS  174 (308)
T ss_pred             -ccCCCCCEEEEcCC
Confidence             12467999999754

>TIGR00417 speE spermidine synthase

Probab=98.62  E-value=2.7e-07  Score=83.08  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+++|||||||+|.++..+++.  ..+++++|+++++++.|++++..      .++++++.+|+.+.-.          
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~----------  140 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA----------  140 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH----------
Confidence            34669999999999999888776  35899999999999999998643      2478888888866421          


Q ss_pred             hcCCCCceEEEEcCCC
Q 023240          212 RKSSSGFAKVVANIPF  227 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~  227 (285)
                       .....||+||.+++.
T Consensus       141 -~~~~~yDvIi~D~~~  155 (270)
T TIGR00417       141 -DTENTFDVIIVDSTD  155 (270)
T ss_pred             -hCCCCccEEEEeCCC
Confidence             124679999998763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.61  E-value=8.1e-07  Score=77.76  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh--------------cCCCeE
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLK  190 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~--------------~~~~v~  190 (285)
                      .++.+.+.+- .+...++.+||..|||.|.-+.+||+.|.+|+|+|+|+.+++.+.+...              ...+++
T Consensus        28 pnp~L~~~~~-~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  106 (226)
T PRK13256         28 PNEFLVKHFS-KLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE  106 (226)
T ss_pred             CCHHHHHHHH-hcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence            3444445543 3444456899999999999999999999999999999999999866321              123799


Q ss_pred             EEEccccccc
Q 023240          191 VLQEDFVKCH  200 (285)
Q Consensus       191 ~~~gD~~~~~  200 (285)
                      ++++|+.+++
T Consensus       107 ~~~gD~f~l~  116 (226)
T PRK13256        107 IYVADIFNLP  116 (226)
T ss_pred             EEEccCcCCC
Confidence            9999999986

>PRK10742 putative methyltransferase; Provisional

Probab=98.57  E-value=3.3e-07  Score=80.75  Aligned_cols=88  Identities=17%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             HHHHHhcCCCCC--EEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-----------CCeEEEEccccc
Q 023240          132 QLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFVK  198 (285)
Q Consensus       132 ~l~~~l~~~~~~--~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-----------~~v~~~~gD~~~  198 (285)
                      .+++.+.++++.  +|||.-+|+|..+..++..|++|+++|.++......+.++...           .+++++++|+.+
T Consensus        77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~  156 (250)
T PRK10742         77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (250)
T ss_pred             HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence            466667777766  9999999999999999999999999999999999998887752           258888888877


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      +--           .....||+|+.+|||...
T Consensus       157 ~L~-----------~~~~~fDVVYlDPMfp~~  177 (250)
T PRK10742        157 ALT-----------DITPRPQVVYLDPMFPHK  177 (250)
T ss_pred             HHh-----------hCCCCCcEEEECCCCCCC
Confidence            531           123479999999999654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.54  E-value=5.3e-07  Score=81.35  Aligned_cols=105  Identities=21%  Similarity=0.297  Sum_probs=69.4

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHH--HHhhcCC-CeEEEEcccccccchhhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVR--ERFASID-QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~--~~~~~~~-~v~~~~gD~~~~~~~~~~~  206 (285)
                      +++...+..-.|++|||||||.||++..|+..|+ .|+|||.+...+.+.+  +++.... .+..+..-+++++      
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp------  178 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP------  178 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc------
Confidence            4566666555799999999999999999999976 6999999988776633  3333222 2333323344443      


Q ss_pred             hHHhhhcCCCCceEEEE-cCCCCCcHHHH------HHhccCCCceeeeE
Q 023240          207 SLFERRKSSSGFAKVVA-NIPFNISTDVI------KQLLPMGDIFSEVV  248 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~-n~P~~~~~~i~------~~l~~~g~~~~~~~  248 (285)
                             ..+.||.|++ ..-||..+|+.      ..|.++|.++-+..
T Consensus       179 -------~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  179 -------NLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             -------ccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence                   2577999987 46677665542      34455666664443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.53  E-value=5.3e-07  Score=81.58  Aligned_cols=89  Identities=21%  Similarity=0.271  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHI  201 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~  201 (285)
                      ++...++.+..   .+++|||+.|=||.++...+..|+ +|++||.|..+++.+++|++.|+    +++++.+|+.+.--
T Consensus       112 R~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~  188 (286)
T PF10672_consen  112 RENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK  188 (286)
T ss_dssp             HHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH
T ss_pred             HhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH
Confidence            44444444433   578999999999999999887775 79999999999999999998763    78999999877421


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                               .....++||+||.+||-
T Consensus       189 ---------~~~~~~~fD~IIlDPPs  205 (286)
T PF10672_consen  189 ---------RLKKGGRFDLIILDPPS  205 (286)
T ss_dssp             ---------HHHHTT-EEEEEE--SS
T ss_pred             ---------HHhcCCCCCEEEECCCC
Confidence                     11235689999999993

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.51  E-value=2.8e-07  Score=83.53  Aligned_cols=92  Identities=26%  Similarity=0.414  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      -.++.|||+|||+|.++...++.|+ +|++||-+ +|.+.|++.++.+   ++|.++.|.++++.+             +
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------------P  241 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-------------P  241 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-------------c
Confidence            3678999999999999999998864 89999976 7899999988765   489999999999854             4


Q ss_pred             CCceEEEEcCCCCC--cHHHH-------HHhccCCCcee
Q 023240          216 SGFAKVVANIPFNI--STDVI-------KQLLPMGDIFS  245 (285)
Q Consensus       216 ~~~D~Vv~n~P~~~--~~~i~-------~~l~~~g~~~~  245 (285)
                      .+.|++|+.|--..  ..+.+       ++|.+.|.+|.
T Consensus       242 Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  242 EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            67899999876321  23333       35666666663

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.51  E-value=1.6e-07  Score=80.51  Aligned_cols=105  Identities=15%  Similarity=0.235  Sum_probs=81.2

Q ss_pred             CCcccCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcc
Q 023240          120 GQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQED  195 (285)
Q Consensus       120 g~~~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD  195 (285)
                      ++...+++.+...+....... ....|+|..||.|.-++..|..+..|++||+|+.-++.|+.|++-+|   +|++++||
T Consensus        72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD  151 (263)
T KOG2730|consen   72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD  151 (263)
T ss_pred             ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence            333556666666655554322 56789999999999999999999999999999999999999998764   89999999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~  232 (285)
                      ++++--.      +.  .....+|+|+..||+..+.-
T Consensus       152 ~ld~~~~------lq--~~K~~~~~vf~sppwggp~y  180 (263)
T KOG2730|consen  152 FLDLASK------LK--ADKIKYDCVFLSPPWGGPSY  180 (263)
T ss_pred             HHHHHHH------Hh--hhhheeeeeecCCCCCCcch
Confidence            9886311      10  23455899999999987653

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.50  E-value=5.4e-07  Score=82.40  Aligned_cols=72  Identities=22%  Similarity=0.325  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      -+++.|||+|||||.+++..|+.|+ +|+|||.+.-+ +.|.+.+..++   -|+++.|.+.++.+            +.
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------------P~  125 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------------PV  125 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------------Cc
Confidence            3689999999999999999999975 89999977554 88888887764   58999999999853            34


Q ss_pred             CCceEEEEc
Q 023240          216 SGFAKVVAN  224 (285)
Q Consensus       216 ~~~D~Vv~n  224 (285)
                      .+.|+||+.
T Consensus       126 eKVDiIvSE  134 (346)
T KOG1499|consen  126 EKVDIIVSE  134 (346)
T ss_pred             cceeEEeeh
Confidence            789999995

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.49  E-value=2.5e-07  Score=81.08  Aligned_cols=76  Identities=25%  Similarity=0.329  Sum_probs=63.9

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ...+||||||.|.+...+|+.  ...++|||+....+..|.+.+.+.+  |+.++++|+.++-.      .+   .+.++
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~------~~---~~~~s  119 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD------YL---IPDGS  119 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH------hc---CCCCC
Confidence            368999999999999999998  5689999999999999999887653  99999999988632      11   34558


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|.|+.|-|
T Consensus       120 l~~I~i~FP  128 (227)
T COG0220         120 LDKIYINFP  128 (227)
T ss_pred             eeEEEEECC
Confidence            999999866

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.49  E-value=1.5e-07  Score=81.45  Aligned_cols=101  Identities=21%  Similarity=0.309  Sum_probs=75.9

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhh-cC---CCeEEEEcccccccchhhhhhH
Q 023240          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFA-SI---DQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~-~~---~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      +....++.+.+|||.+.|-||.++..+++|+ +|+++|.|+..++.|+-|-= ..   .+++++.||+.++--       
T Consensus       127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~-------  199 (287)
T COG2521         127 VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK-------  199 (287)
T ss_pred             hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh-------
Confidence            3445566799999999999999999999988 99999999999999987631 11   278999999987521       


Q ss_pred             HhhhcCCCCceEEEEcCCC-CCcH---------HHHHHhccCCCce
Q 023240          209 FERRKSSSGFAKVVANIPF-NIST---------DVIKQLLPMGDIF  244 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~-~~~~---------~i~~~l~~~g~~~  244 (285)
                        + .+..+||+||.+||. +...         ++.+-|.++|++|
T Consensus       200 --~-~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF  242 (287)
T COG2521         200 --D-FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF  242 (287)
T ss_pred             --c-CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence              1 355779999999994 3332         3334445566665

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.44  E-value=8.4e-07  Score=76.12  Aligned_cols=76  Identities=20%  Similarity=0.285  Sum_probs=59.3

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ...+||||||.|.+...+|..  +..++|||++...+..+..++...  +|+.++++|+..+-.     .+    ..+++
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~-----~~----~~~~~   88 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR-----RL----FPPGS   88 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH-----HH----STTTS
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh-----hc----ccCCc
Confidence            448999999999999999987  679999999999999998887754  599999999987421     11    34578


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|.|..|-|
T Consensus        89 v~~i~i~FP   97 (195)
T PF02390_consen   89 VDRIYINFP   97 (195)
T ss_dssp             EEEEEEES-
T ss_pred             hheEEEeCC
Confidence            999999865

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.43  E-value=1.3e-06  Score=81.98  Aligned_cols=82  Identities=12%  Similarity=0.129  Sum_probs=67.5

Q ss_pred             CEEEEEcCcccHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~-~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      -+|||+.||+|..++.++..  | .+|+++|+|+++++.+++|++.++  +++++++|+..+..           .....
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-----------~~~~~  114 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-----------YRNRK  114 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-----------HhCCC
Confidence            58999999999999999986  4 489999999999999999998764  68999999987632           12356


Q ss_pred             ceEEEEcCCCCCcHHHHHH
Q 023240          218 FAKVVANIPFNISTDVIKQ  236 (285)
Q Consensus       218 ~D~Vv~n~P~~~~~~i~~~  236 (285)
                      ||+|+.+| |..+.+++..
T Consensus       115 fDvIdlDP-fGs~~~fld~  132 (374)
T TIGR00308       115 FHVIDIDP-FGTPAPFVDS  132 (374)
T ss_pred             CCEEEeCC-CCCcHHHHHH
Confidence            99999999 6666666653

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.40  E-value=8.2e-07  Score=75.64  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             CEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC--CCeE-EEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          143 DIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~--~~v~-~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ..|||+|||||..-...-.. +..|+++|.++.|-+.|.+.+...  .++. ++++++.+++.           ...+++
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-----------l~d~s~  146 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-----------LADGSY  146 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-----------cccCCe
Confidence            46899999999977665533 789999999999999999888754  3776 99999999873           345789


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |.||...-
T Consensus       147 DtVV~Tlv  154 (252)
T KOG4300|consen  147 DTVVCTLV  154 (252)
T ss_pred             eeEEEEEE
Confidence            99998643

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.40  E-value=2e-06  Score=75.52  Aligned_cols=48  Identities=21%  Similarity=0.397  Sum_probs=38.4

Q ss_pred             HHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHH
Q 023240          131 DQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGL  178 (285)
Q Consensus       131 ~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~  178 (285)
                      ..+++...+ .++.+|||+|||+|.++..+++.| .+|+|+|+++.++..
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            344444443 267799999999999999999995 589999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=3.8e-06  Score=74.32  Aligned_cols=106  Identities=21%  Similarity=0.269  Sum_probs=82.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (285)
                      ...++..+.+.+|.+|+|-|+|+|.++.++++.   .++++..|+.+...+.|.+.++..   +++++.+-|+...-+. 
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~-  172 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL-  172 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc-
Confidence            567888999999999999999999999999987   369999999999999999999876   3999999999876653 


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCC--CCcHHHHHHhccCCCcee
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~--~~~~~i~~~l~~~g~~~~  245 (285)
                               .....+|.|+.++|-  ....-..+.+...|..++
T Consensus       173 ---------~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  173 ---------IKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             ---------ccccccceEEEcCCChhhhhhhhHHHhhhcCceEE
Confidence                     235678999999763  222233344444554443

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.36  E-value=2.6e-06  Score=81.88  Aligned_cols=72  Identities=26%  Similarity=0.497  Sum_probs=53.5

Q ss_pred             CCEEEEEcCcccHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhh
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~------~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      +..|+|+|||+|-+....++++      .+|+|||.|+.++..+++.++.+   ++|+++++|+.++..           
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----------  255 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----------  255 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----------
Confidence            5689999999999987776653      59999999999988877664443   489999999999863           


Q ss_pred             cCCCCceEEEEcCC
Q 023240          213 KSSSGFAKVVANIP  226 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P  226 (285)
                        +.++|+||+.+-
T Consensus       256 --pekvDIIVSElL  267 (448)
T PF05185_consen  256 --PEKVDIIVSELL  267 (448)
T ss_dssp             --SS-EEEEEE---
T ss_pred             --CCceeEEEEecc
Confidence              358999999643

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.35  E-value=3.2e-06  Score=82.28  Aligned_cols=105  Identities=13%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHhhcCC--
Q 023240          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASID--  187 (285)
Q Consensus       116 ~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~--~~V~giD~~~~~v~~a~~~~~~~~--  187 (285)
                      .+..|+ |++++++.+.|++.+.+.+..+|+|..||+|.+....++.    .  ..++|.|+++.....|+.|+--++  
T Consensus       162 ~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~  240 (489)
T COG0286         162 GKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE  240 (489)
T ss_pred             CCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            344577 9999999999999999977789999999999987666543    1  569999999999999999976443  


Q ss_pred             -CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       188 -~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                       ++.+.++|...-|.....       .....||.|++||||+
T Consensus       241 ~~~~i~~~dtl~~~~~~~~-------~~~~~~D~viaNPPf~  275 (489)
T COG0286         241 GDANIRHGDTLSNPKHDDK-------DDKGKFDFVIANPPFS  275 (489)
T ss_pred             ccccccccccccCCccccc-------CCccceeEEEeCCCCC
Confidence             457777887766543210       1446799999999997

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.26  E-value=6.2e-06  Score=69.38  Aligned_cols=96  Identities=21%  Similarity=0.279  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEcccccccchhhhhhHHhh
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ...+.+|||+|||+|..++.++..  +.+|+..|.++ .++.++.|++.++     ++.+...|..+..    ..+.   
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~----~~~~---  114 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDEL----DSDL---  114 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-H----HHHH---
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcc----cccc---
Confidence            346789999999999999999998  67999999998 9999999988652     5666666654311    0111   


Q ss_pred             hcCCCCceEEEEc-CCCCCc--H---HHHHHhccCCCc
Q 023240          212 RKSSSGFAKVVAN-IPFNIS--T---DVIKQLLPMGDI  243 (285)
Q Consensus       212 ~~~~~~~D~Vv~n-~P~~~~--~---~i~~~l~~~g~~  243 (285)
                       .....||+|++. .-|...  .   ..+.+++..++.
T Consensus       115 -~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~  151 (173)
T PF10294_consen  115 -LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK  151 (173)
T ss_dssp             -HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred             -cccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence             244679999874 444322  2   334566665555

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02823 spermine synthase

Probab=98.26  E-value=6.2e-06  Score=76.43  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhh
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+++||.||+|.|.++..+++.  ..+|+.||+|+++++.|++.+..      .++++++.+|+.+.--           
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~-----------  171 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE-----------  171 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh-----------
Confidence            4679999999999999988875  35899999999999999998753      2589999999987521           


Q ss_pred             cCCCCceEEEEcC
Q 023240          213 KSSSGFAKVVANI  225 (285)
Q Consensus       213 ~~~~~~D~Vv~n~  225 (285)
                      ...++||+||.+.
T Consensus       172 ~~~~~yDvIi~D~  184 (336)
T PLN02823        172 KRDEKFDVIIGDL  184 (336)
T ss_pred             hCCCCccEEEecC
Confidence            2346799999984

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.25  E-value=8e-06  Score=74.12  Aligned_cols=99  Identities=17%  Similarity=0.197  Sum_probs=51.4

Q ss_pred             HHHHHHHhcCCC-----CCEEEEEcCcccHHHHHHH-Hh-CCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEccccc
Q 023240          130 NDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLL-NA-GATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVK  198 (285)
Q Consensus       130 ~~~l~~~l~~~~-----~~~VLDiGcG~G~~t~~la-~~-~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~  198 (285)
                      +..+.+.+....     .-++||||||.-.+--.|+ +. +.+++|.|+++..++.|+++++.++    +|+++...-..
T Consensus        86 i~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~  165 (299)
T PF05971_consen   86 IHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD  165 (299)
T ss_dssp             HHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-
T ss_pred             HHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc
Confidence            444555554322     3479999999887543333 33 8899999999999999999999872    68877653221


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~  235 (285)
                      .     .++.+.  .....||..++||||+...+...
T Consensus       166 ~-----i~~~i~--~~~e~~dftmCNPPFy~s~~e~~  195 (299)
T PF05971_consen  166 N-----IFDGII--QPNERFDFTMCNPPFYSSQEEAE  195 (299)
T ss_dssp             S-----STTTST--T--S-EEEEEE-----SS-----
T ss_pred             c-----cchhhh--cccceeeEEecCCccccChhhhc
Confidence            1     111111  23457999999999988875443

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.22  E-value=2.8e-06  Score=73.41  Aligned_cols=94  Identities=17%  Similarity=0.320  Sum_probs=61.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhc-------C----CCeEE
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS-------I----DQLKV  191 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~-------~----~~v~~  191 (285)
                      +.+.....+++.+++.+++..+|||||.|......|.. ++ +++|||+.+...+.|+...+.       .    +++++
T Consensus        26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l  105 (205)
T PF08123_consen   26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL  105 (205)
T ss_dssp             CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence            34667788889999999999999999999998877754 55 599999999998887754331       1    36888


Q ss_pred             EEcccccccchhhhhhHHhhhcCCCCceEEEEc-CCC
Q 023240          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF  227 (285)
Q Consensus       192 ~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n-~P~  227 (285)
                      .+||+.+.+....   ++      ...|+|+.| --|
T Consensus       106 ~~gdfl~~~~~~~---~~------s~AdvVf~Nn~~F  133 (205)
T PF08123_consen  106 IHGDFLDPDFVKD---IW------SDADVVFVNNTCF  133 (205)
T ss_dssp             ECS-TTTHHHHHH---HG------HC-SEEEE--TTT
T ss_pred             eccCccccHhHhh---hh------cCCCEEEEecccc
Confidence            9999987653221   11      335888887 444

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.21  E-value=2.3e-06  Score=77.93  Aligned_cols=114  Identities=26%  Similarity=0.372  Sum_probs=91.6

Q ss_pred             HHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHH-------HHH
Q 023240          108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG-------LVR  180 (285)
Q Consensus       108 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~-------~a~  180 (285)
                      +..+.+..|...|. ...++++.-.+.......+|+.|+|.--|||.+....|.-|+.|+|-|||-.++.       ..+
T Consensus       176 i~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~  254 (421)
T KOG2671|consen  176 IEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIK  254 (421)
T ss_pred             hhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchh
Confidence            44445666666665 7888888888888888999999999999999999998988999999999988887       345


Q ss_pred             HHhhcCC----CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHH
Q 023240          181 ERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (285)
Q Consensus       181 ~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i  233 (285)
                      .|+++++    -+.++.+|..+-++           .....||.||++|||.+....
T Consensus       255 aNFkQYg~~~~fldvl~~D~sn~~~-----------rsn~~fDaIvcDPPYGVRe~~  300 (421)
T KOG2671|consen  255 ANFKQYGSSSQFLDVLTADFSNPPL-----------RSNLKFDAIVCDPPYGVREGA  300 (421)
T ss_pred             HhHHHhCCcchhhheeeecccCcch-----------hhcceeeEEEeCCCcchhhhh
Confidence            6666654    46788899988775           334679999999999877643

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.21  E-value=7.7e-06  Score=79.02  Aligned_cols=93  Identities=14%  Similarity=0.153  Sum_probs=73.6

Q ss_pred             ccCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcc
Q 023240          123 YMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQED  195 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD  195 (285)
                      |+.+....-.....+  .+.++.+|||++||.|.=|..+|..   .+.|+++|+++..++.+++|+++.+  |+.+.+.|
T Consensus        93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D  172 (470)
T PRK11933         93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD  172 (470)
T ss_pred             EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            444444444444555  6778999999999999999999886   3689999999999999999999775  78899999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      +..+.-           .....||.|+.++|
T Consensus       173 ~~~~~~-----------~~~~~fD~ILvDaP  192 (470)
T PRK11933        173 GRVFGA-----------ALPETFDAILLDAP  192 (470)
T ss_pred             hhhhhh-----------hchhhcCeEEEcCC
Confidence            876531           12356999999988

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.21  E-value=9.9e-07  Score=76.30  Aligned_cols=111  Identities=19%  Similarity=0.252  Sum_probs=76.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhh
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~  204 (285)
                      .-|..++.|+..+...+-.++||+|||||-.+..+.....+++|+|+|+.|++.|.++-- +  =++.++|+..+.    
T Consensus       109 ~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~-Y--D~L~~Aea~~Fl----  181 (287)
T COG4976         109 SVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL-Y--DTLYVAEAVLFL----  181 (287)
T ss_pred             ccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc-h--HHHHHHHHHHHh----
Confidence            346777888888887777899999999999999998888899999999999999987621 1  123444444321    


Q ss_pred             hhhHHhhhcCCCCceEEEEc--CCCCCc-HHHH---HHhccCCCceeeeE
Q 023240          205 MLSLFERRKSSSGFAKVVAN--IPFNIS-TDVI---KQLLPMGDIFSEVV  248 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n--~P~~~~-~~i~---~~l~~~g~~~~~~~  248 (285)
                           +. .....||+|++.  +||-.. .+++   ..++.+|++|...+
T Consensus       182 -----~~-~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         182 -----ED-LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             -----hh-ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence                 11 356778999884  565322 2322   35566777764433

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.21  E-value=1.4e-05  Score=72.94  Aligned_cols=97  Identities=11%  Similarity=0.357  Sum_probs=77.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC  199 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~  199 (285)
                      |...|-+++.+++.+.+.++..++|.-+|.|..+..+++.  .++|+|+|.|+.+++.|+++++.. ++++++++++.++
T Consensus         2 ~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l   81 (305)
T TIGR00006         2 FFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANF   81 (305)
T ss_pred             CCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence            4455777888999999888899999999999999999876  479999999999999999988765 4899999999886


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      .-      .++. .....+|.|+.|+-
T Consensus        82 ~~------~l~~-~~~~~vDgIl~DLG  101 (305)
T TIGR00006        82 FE------HLDE-LLVTKIDGILVDLG  101 (305)
T ss_pred             HH------HHHh-cCCCcccEEEEecc
Confidence            42      1111 12345788887643

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.20  E-value=2.5e-06  Score=71.66  Aligned_cols=60  Identities=28%  Similarity=0.371  Sum_probs=54.0

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~  201 (285)
                      .+.+.|+|+|+|.++...|....+|++||.++...+.|++|+.-.  .|+++++||+.+..+
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f   94 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF   94 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence            468999999999999988888889999999999999999997544  499999999999876

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.10  E-value=6.5e-06  Score=71.77  Aligned_cols=89  Identities=11%  Similarity=0.194  Sum_probs=60.0

Q ss_pred             EEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      .++|+|||+|..++.+|..-.+|+|+|+|+.|++.|++......   ..++...+..++.            ..+.+.|+
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~------------g~e~SVDl  103 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL------------GGEESVDL  103 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc------------CCCcceee
Confidence            89999999998788888877799999999999999998754211   2233333333332            23577899


Q ss_pred             EEEcCCCCCcH------HHHHHhccCCCce
Q 023240          221 VVANIPFNIST------DVIKQLLPMGDIF  244 (285)
Q Consensus       221 Vv~n~P~~~~~------~i~~~l~~~g~~~  244 (285)
                      |++.-.+|+..      .+-+-|.+.|+++
T Consensus       104 I~~Aqa~HWFdle~fy~~~~rvLRk~Gg~i  133 (261)
T KOG3010|consen  104 ITAAQAVHWFDLERFYKEAYRVLRKDGGLI  133 (261)
T ss_pred             ehhhhhHHhhchHHHHHHHHHHcCCCCCEE
Confidence            98876665542      2223444566565

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.08  E-value=2.9e-05  Score=67.35  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      ....++....+...++...++++||||.=||++++.+|..   +++|+++|+++...+.+....+..+   +|++++|++
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a  134 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA  134 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence            4566777777777777778999999999999999999886   7899999999999999988777654   899999998


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCC---CCCcHHHHHHhccCCCce
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP---FNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P---~~~~~~i~~~l~~~g~~~  244 (285)
                      .+.-     ..++.. .+.+.||.+|.+--   |..--+-.-+|+..|+.+
T Consensus       135 ~esL-----d~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi  179 (237)
T KOG1663|consen  135 LESL-----DELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVI  179 (237)
T ss_pred             hhhH-----HHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEE
Confidence            7742     122222 35678999999632   321112223455555555

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.07  E-value=2.6e-05  Score=76.27  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+..+||||||.|.++..+|..  ...++|||++...+..+.+.....  .|+.++++|+..+..      .    ....
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~----~~~~  416 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------D----LPNN  416 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------h----cCcc
Confidence            4678999999999999999987  578999999999999888876654  489999888754321      1    3456


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ++|.|+.|-|
T Consensus       417 sv~~i~i~FP  426 (506)
T PRK01544        417 SLDGIYILFP  426 (506)
T ss_pred             cccEEEEECC
Confidence            7899999866

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.03  E-value=3.9e-05  Score=70.65  Aligned_cols=93  Identities=20%  Similarity=0.318  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .++.++|||||++|..|..++++|.+|+|||..+ +    ...+...++|+.+.+|......            ....+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l----~~~L~~~~~V~h~~~d~fr~~p------------~~~~vD  272 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-M----AQSLMDTGQVEHLRADGFKFRP------------PRKNVD  272 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-c----CHhhhCCCCEEEEeccCcccCC------------CCCCCC
Confidence            4788999999999999999999999999999443 2    2233445799999999887642            246789


Q ss_pred             EEEEcC---CCCCcHHHHHHhccCCCceeeeEeee
Q 023240          220 KVVANI---PFNISTDVIKQLLPMGDIFSEVVLLL  251 (285)
Q Consensus       220 ~Vv~n~---P~~~~~~i~~~l~~~g~~~~~~~~~~  251 (285)
                      .++++.   |.....-+.+|+.. | .-..+.+.+
T Consensus       273 wvVcDmve~P~rva~lm~~Wl~~-g-~cr~aIfnL  305 (357)
T PRK11760        273 WLVCDMVEKPARVAELMAQWLVN-G-WCREAIFNL  305 (357)
T ss_pred             EEEEecccCHHHHHHHHHHHHhc-C-cccEEEEEE
Confidence            999984   43333333345533 2 334444443

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.01  E-value=3.8e-05  Score=67.98  Aligned_cols=115  Identities=23%  Similarity=0.334  Sum_probs=81.4

Q ss_pred             ccCCcccCCHHHHHHHHHHhc-----CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEE
Q 023240          118 SLGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (285)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~-----~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~  192 (285)
                      ..|..|..+.+-...++..-.     -....++||||+|.|..|..|+..-.+|++.|.|+.|...++++     +.+++
T Consensus        66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl  140 (265)
T PF05219_consen   66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVL  140 (265)
T ss_pred             cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEE
Confidence            357778888877777777552     12356899999999999999998878999999999998888765     45554


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEE-c------CCCCCcHHHHHHhccCCCceeeeEeee
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVA-N------IPFNISTDVIKQLLPMGDIFSEVVLLL  251 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~-n------~P~~~~~~i~~~l~~~g~~~~~~~~~~  251 (285)
                      ..|  ++.            ..+.+||+|.+ |      -|.....++-..|.+.|..+-.++.-+
T Consensus       141 ~~~--~w~------------~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~  192 (265)
T PF05219_consen  141 DID--DWQ------------QTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF  192 (265)
T ss_pred             ehh--hhh------------ccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence            332  232            23457899876 3      455566677677777666665554433

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.99  E-value=4e-05  Score=62.15  Aligned_cols=59  Identities=24%  Similarity=0.442  Sum_probs=46.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHH-----h-CCEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEccccc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVK  198 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~-----~-~~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD~~~  198 (285)
                      .+...|+|+|||-|+++..++.     . +.+|++||.++..++.+..+.+...     ++++..++..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            4677999999999999999998     4 6799999999999998888766432     45555555443

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.93  E-value=2.6e-05  Score=62.75  Aligned_cols=55  Identities=16%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             EEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccc
Q 023240          144 IVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~  198 (285)
                      +++|+|||.|.++..++..+  .+|+++|.++.+++.++++++.+  +++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999998874  47999999999999999998865  368888776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.00012  Score=68.42  Aligned_cols=96  Identities=19%  Similarity=0.291  Sum_probs=74.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~  196 (285)
                      +..+..........+.+.+|.+|||+.++.|.=|.++|+.    +..|+++|+++..+...++|++..+  |+.+++.|+
T Consensus       138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~  217 (355)
T COG0144         138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA  217 (355)
T ss_pred             EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence            3444444455556788889999999999999999888886    3467999999999999999999876  788999998


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      ...+-..         .....||.|+.++|=
T Consensus       218 ~~~~~~~---------~~~~~fD~iLlDaPC  239 (355)
T COG0144         218 RRLAELL---------PGGEKFDRILLDAPC  239 (355)
T ss_pred             ccccccc---------cccCcCcEEEECCCC
Confidence            7654210         122359999999883

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.70  E-value=0.00022  Score=64.71  Aligned_cols=96  Identities=21%  Similarity=0.329  Sum_probs=75.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      +..+..........+.+.++..|||+++|.|.=|..+++.   .+.|++.|+++..+...+.++.+.+  ++.+...|+.
T Consensus        67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~  146 (283)
T PF01189_consen   67 FYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADAR  146 (283)
T ss_dssp             EEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHH
T ss_pred             EEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccc
Confidence            3333444445556678888999999999999999999886   3699999999999999999998775  8888888888


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      .....          .....||.|+.++|=+
T Consensus       147 ~~~~~----------~~~~~fd~VlvDaPCS  167 (283)
T PF01189_consen  147 KLDPK----------KPESKFDRVLVDAPCS  167 (283)
T ss_dssp             HHHHH----------HHTTTEEEEEEECSCC
T ss_pred             ccccc----------ccccccchhhcCCCcc
Confidence            76321          1234699999998843

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.65  E-value=0.00011  Score=64.30  Aligned_cols=114  Identities=15%  Similarity=0.195  Sum_probs=68.7

Q ss_pred             ccCCHHHHHHHHHHhc-CC--CCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEc
Q 023240          123 YMLNSEINDQLAAAAA-VQ--EGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID-QLKVLQE  194 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~-~~--~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~g  194 (285)
                      |..++.++..=...+. ..  .+.+|||||||.|.....+.+.    +.+|++.|.++.+++..+++....+ ++...+.
T Consensus        50 FfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~  129 (264)
T KOG2361|consen   50 FFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVW  129 (264)
T ss_pred             ccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccce
Confidence            4555555444333332 22  2337999999999999988875    2589999999999999998876443 4555555


Q ss_pred             ccccccchhhhhhHHhhhcCCCCceEEEE-----cCCCCCcHH---HHHHhccCCCce
Q 023240          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVA-----NIPFNISTD---VIKQLLPMGDIF  244 (285)
Q Consensus       195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~-----n~P~~~~~~---i~~~l~~~g~~~  244 (285)
                      |+..-....        ....+.+|++++     ..+-.....   .+.+++.+|+.+
T Consensus       130 Dlt~~~~~~--------~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~l  179 (264)
T KOG2361|consen  130 DLTSPSLKE--------PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSL  179 (264)
T ss_pred             eccchhccC--------CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEE
Confidence            554322111        134566776654     333222222   334555566654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.65  E-value=0.00013  Score=61.94  Aligned_cols=89  Identities=20%  Similarity=0.337  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~  204 (285)
                      ..+.+.+...-+.-.+++|||+|+|+|-.++..+..|+ .|++.|+++.....++.|.+.|+ ++.+...|..- +    
T Consensus        65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----  139 (218)
T COG3897          65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----  139 (218)
T ss_pred             HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C----
Confidence            45566666666666799999999999999999998875 79999999999999999988887 78888888766 2    


Q ss_pred             hhhHHhhhcCCCCceEEEE-cCCCCCc
Q 023240          205 MLSLFERRKSSSGFAKVVA-NIPFNIS  230 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~-n~P~~~~  230 (285)
                                .+.+|+++. +.-|+..
T Consensus       140 ----------~~~~Dl~LagDlfy~~~  156 (218)
T COG3897         140 ----------PPAFDLLLAGDLFYNHT  156 (218)
T ss_pred             ----------CcceeEEEeeceecCch
Confidence                      256788765 4555433

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.62  E-value=0.00028  Score=64.48  Aligned_cols=95  Identities=13%  Similarity=0.288  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~  203 (285)
                      |-++..+++.+.+.++..++|.--|.|..+..+++.  +++|+|+|.|+.+++.|++++... +++.++++++.++.-  
T Consensus         6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~--   83 (310)
T PF01795_consen    6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE--   83 (310)
T ss_dssp             -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH--
T ss_pred             cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH--
Confidence            556778888888888999999999999999999986  689999999999999999998765 589999999988752  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                          .+........+|.|+.++-.
T Consensus        84 ----~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   84 ----YLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             ----HHHHTTTTS-EEEEEEE-S-
T ss_pred             ----HHHHccCCCccCEEEEcccc
Confidence                22221144678999987643

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.61  E-value=0.00041  Score=61.67  Aligned_cols=75  Identities=21%  Similarity=0.351  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhh
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+++||=||-|.|..+..+.+..  .+|+.||+++..++.|++.+..      .++++++.+|+...--           
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~-----------  144 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK-----------  144 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH-----------
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH-----------
Confidence            57899999999999999998864  6899999999999999987653      2589999999987531           


Q ss_pred             cCCC-CceEEEEcCC
Q 023240          213 KSSS-GFAKVVANIP  226 (285)
Q Consensus       213 ~~~~-~~D~Vv~n~P  226 (285)
                      .... .||+|+.+++
T Consensus       145 ~~~~~~yDvIi~D~~  159 (246)
T PF01564_consen  145 ETQEEKYDVIIVDLT  159 (246)
T ss_dssp             TSSST-EEEEEEESS
T ss_pred             hccCCcccEEEEeCC
Confidence            2233 8999999754

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.61  E-value=0.00044  Score=60.89  Aligned_cols=63  Identities=21%  Similarity=0.348  Sum_probs=49.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~  198 (285)
                      ..+.......+..+|+|||+|+|.++..+++.  +.+++..|. |+.++.+++    .++|+++.||+.+
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~  154 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD  154 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh
Confidence            34455566666789999999999999999887  679999998 888888888    4699999999983

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.53  E-value=0.00057  Score=58.08  Aligned_cols=68  Identities=24%  Similarity=0.283  Sum_probs=54.0

Q ss_pred             EEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      +++|||+|.|.=++.+|-.  ..+++.+|.+..-+...+.-....  .|++++++++.+ .            .....||
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~------------~~~~~fd  117 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P------------EYRESFD  117 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T------------TTTT-EE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c------------ccCCCcc
Confidence            8999999999988877654  679999999998887777666543  489999999998 2            3457899


Q ss_pred             EEEEc
Q 023240          220 KVVAN  224 (285)
Q Consensus       220 ~Vv~n  224 (285)
                      +|++=
T Consensus       118 ~v~aR  122 (184)
T PF02527_consen  118 VVTAR  122 (184)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99984

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.50  E-value=0.00087  Score=60.04  Aligned_cols=90  Identities=14%  Similarity=0.175  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ..+++||=||-|-|..++.+.+...+|+-||+|++.++.+++.+..      .++++++.. +.+              .
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--------------~  135 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--------------L  135 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--------------c
Confidence            3578999999999999999999866999999999999999985542      257777751 111              2


Q ss_pred             CCCCceEEEEcCCCCCc-HHHHHHhccCCCce
Q 023240          214 SSSGFAKVVANIPFNIS-TDVIKQLLPMGDIF  244 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~~-~~i~~~l~~~g~~~  244 (285)
                      ..++||+||.+..+... -+.+++.+..++.+
T Consensus       136 ~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~  167 (262)
T PRK00536        136 DIKKYDLIICLQEPDIHKIDGLKRMLKEDGVF  167 (262)
T ss_pred             cCCcCCEEEEcCCCChHHHHHHHHhcCCCcEE
Confidence            34679999999544321 12345555555555

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.49  E-value=0.00046  Score=59.91  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +.+++|||+|.|.=++.+|-.  +.+|+-+|....-+...+.-....  +|++++++.+++...             ...
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-------------~~~  134 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-------------EKK  134 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-------------ccc
Confidence            589999999999998887743  567999999988887777766544  489999999999852             233


Q ss_pred             -ceEEEEc--CCCCCcHHHHHHhccCCCc
Q 023240          218 -FAKVVAN--IPFNISTDVIKQLLPMGDI  243 (285)
Q Consensus       218 -~D~Vv~n--~P~~~~~~i~~~l~~~g~~  243 (285)
                       ||+|.+=  -+.....+....++..++.
T Consensus       135 ~~D~vtsRAva~L~~l~e~~~pllk~~g~  163 (215)
T COG0357         135 QYDVVTSRAVASLNVLLELCLPLLKVGGG  163 (215)
T ss_pred             cCcEEEeehccchHHHHHHHHHhcccCCc
Confidence             9999883  3344445555566655443

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.47  E-value=0.0002  Score=62.66  Aligned_cols=46  Identities=24%  Similarity=0.356  Sum_probs=41.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI  186 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~  186 (285)
                      .+..+|||||-+|.+|+.+|+. + ..|.|+|||+..+..|+++++..
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            5678999999999999999997 4 47999999999999999998753

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.47  E-value=0.00071  Score=61.27  Aligned_cols=72  Identities=19%  Similarity=0.303  Sum_probs=60.2

Q ss_pred             CCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcC------CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~------~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      +++||-||-|.|..+..+.+..  .+++.||+++..++.+++.+...      ++++++.+|+.++--           .
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~-----------~  145 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR-----------D  145 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH-----------h
Confidence            3699999999999999999984  69999999999999999987632      488999999987631           1


Q ss_pred             CCCCceEEEEc
Q 023240          214 SSSGFAKVVAN  224 (285)
Q Consensus       214 ~~~~~D~Vv~n  224 (285)
                      ....||+||.+
T Consensus       146 ~~~~fDvIi~D  156 (282)
T COG0421         146 CEEKFDVIIVD  156 (282)
T ss_pred             CCCcCCEEEEc
Confidence            23379999997

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.46  E-value=0.00023  Score=59.84  Aligned_cols=74  Identities=23%  Similarity=0.427  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++.+|||+||++|..+..+.+.+   .+|+|+|+.+.         ....++..+.+|+.+........+.+.  .....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLP--ESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHG--TTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhcc--ccccC
Confidence            34799999999999999999986   79999999865         222478888888866533222222221  12368


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      +|+|+++.
T Consensus        92 ~dlv~~D~   99 (181)
T PF01728_consen   92 FDLVLSDM   99 (181)
T ss_dssp             ESEEEE--
T ss_pred             cceecccc
Confidence            99999986

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.45  E-value=0.00028  Score=61.91  Aligned_cols=87  Identities=21%  Similarity=0.324  Sum_probs=53.2

Q ss_pred             HHHHHhcCCCC--CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh---cC--------CCeEEEEccccc
Q 023240          132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SI--------DQLKVLQEDFVK  198 (285)
Q Consensus       132 ~l~~~l~~~~~--~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~---~~--------~~v~~~~gD~~~  198 (285)
                      .+++.+.++++  .+|||.-+|-|.-+..+|..|++|+++|.|+-+....+.-+.   ..        .+++++++|..+
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~  143 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE  143 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence            35555555554  489999999999999999889999999999988766654332   11        278999999988


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +-.           ....++|+|..+|-|..
T Consensus       144 ~L~-----------~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  144 YLR-----------QPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             HCC-----------CHSS--SEEEE--S---
T ss_pred             HHh-----------hcCCCCCEEEECCCCCC
Confidence            632           23478999999998864

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.44  E-value=0.00051  Score=63.68  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhc--------CC----CeEEEEcccccccchhhhhh
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS--------ID----QLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~--------~~----~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ++.+|||+|||-|.-..-.... -..++|+|++...++.|++++..        ..    ...++.+|.....+.+.   
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~---  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK---  138 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT---
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh---
Confidence            5789999999988755555544 57999999999999999999831        11    35678888775433211   


Q ss_pred             HHhhhcCCCCceEEEEcCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                       +.  .....||+|=+-..+|
T Consensus       139 -~~--~~~~~FDvVScQFalH  156 (331)
T PF03291_consen  139 -LP--PRSRKFDVVSCQFALH  156 (331)
T ss_dssp             -SS--STTS-EEEEEEES-GG
T ss_pred             -cc--ccCCCcceeehHHHHH
Confidence             10  1225899998765543

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.43  E-value=0.0019  Score=56.73  Aligned_cols=109  Identities=14%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             CCCCccccCCcccCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHH-HHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-
Q 023240          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTN-VLLNAGATVLAIEKDQHMVGLVRERFASID-  187 (285)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~-~la~~~~~V~giD~~~~~v~~a~~~~~~~~-  187 (285)
                      ...+...|.|.+.+.+..+.+..-.....  .|++||=+|=.--.+.. ++.....+|+.+|+++..++..++..++.+ 
T Consensus        13 RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl   92 (243)
T PF01861_consen   13 RPEPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL   92 (243)
T ss_dssp             -----GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred             CCCCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Confidence            33566778888888888888776666543  58899999854443322 222236799999999999999998887665 


Q ss_pred             CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      +|+.++.|+.+--+.          .-.+.||.++.+|||...
T Consensus        93 ~i~~~~~DlR~~LP~----------~~~~~fD~f~TDPPyT~~  125 (243)
T PF01861_consen   93 PIEAVHYDLRDPLPE----------ELRGKFDVFFTDPPYTPE  125 (243)
T ss_dssp             -EEEE---TTS---T----------TTSS-BSEEEE---SSHH
T ss_pred             ceEEEEecccccCCH----------HHhcCCCEEEeCCCCCHH
Confidence            799999999774321          234789999999999854

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.40  E-value=0.00073  Score=58.42  Aligned_cols=55  Identities=24%  Similarity=0.350  Sum_probs=47.8

Q ss_pred             EEEEcCcccHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccc
Q 023240          145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (285)
Q Consensus       145 VLDiGcG~G~~t~~la~~~~--~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~  199 (285)
                      |.||||--|++...|.+.+.  +++++|+++.-++.|+++++..+   ++++..||.++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~   60 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV   60 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence            68999999999999999864  89999999999999999998764   899999997653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.33  E-value=0.00067  Score=61.24  Aligned_cols=74  Identities=19%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             EEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv  222 (285)
                      +++|+.||.|.++..+.+.|.+ |.++|+++.+++..+.|+..   . ++.+|+.++...+          ..+.+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~----------~~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKD----------FIPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhh----------cCCCCCEEE
Confidence            5899999999999998888764 78899999999999998742   2 6788888875321          035689999


Q ss_pred             EcCCCCCcH
Q 023240          223 ANIPFNIST  231 (285)
Q Consensus       223 ~n~P~~~~~  231 (285)
                      +.||-+..+
T Consensus        68 ~gpPCq~fS   76 (275)
T cd00315          68 GGFPCQPFS   76 (275)
T ss_pred             eCCCChhhh
Confidence            999965444

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.26  E-value=0.0027  Score=57.46  Aligned_cols=95  Identities=11%  Similarity=0.246  Sum_probs=75.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC  199 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~  199 (285)
                      ..-+-++..+++.+.+.++...+|.--|.|..+..+....   ++++|+|.|+.+++.|++.+..+ ++++++++++.++
T Consensus         6 ~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l   85 (314)
T COG0275           6 RHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL   85 (314)
T ss_pred             CccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence            3446678889999999999999999999999999998872   68999999999999999998875 5999999998776


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      ....      .. .....+|.|+.++
T Consensus        86 ~~~l------~~-~~i~~vDGiL~DL  104 (314)
T COG0275          86 AEAL------KE-LGIGKVDGILLDL  104 (314)
T ss_pred             HHHH------Hh-cCCCceeEEEEec
Confidence            5321      11 2234677777653

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.26  E-value=0.0026  Score=55.32  Aligned_cols=100  Identities=12%  Similarity=0.118  Sum_probs=68.7

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      +.+.+|.+||-+|+++|....+++.-   .+.|+|||.++.....+-.-.++.+||--+-+|+..-.-..         .
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~---------~  139 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR---------M  139 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT---------T
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh---------c
Confidence            34568899999999999999999886   46999999999877766666666679999999998543211         1


Q ss_pred             CCCCceEEEEcCCCCCcHHHH----HHhccCCCcee
Q 023240          214 SSSGFAKVVANIPFNISTDVI----KQLLPMGDIFS  245 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~~~~i~----~~l~~~g~~~~  245 (285)
                      .-+.+|+|+.+.......+++    +.++..|+.+-
T Consensus       140 lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~  175 (229)
T PF01269_consen  140 LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLI  175 (229)
T ss_dssp             TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEE
Confidence            235789999998766666554    35556656553

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.18  E-value=0.0014  Score=56.39  Aligned_cols=58  Identities=24%  Similarity=0.353  Sum_probs=46.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~  181 (285)
                      ...+.+++++++.... .+++.|||.-||+|..+.+..+.+.+.+|+|+++..++.|++
T Consensus       174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            4456788888887764 468899999999999999999899999999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=97.18  E-value=0.0015  Score=59.27  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=51.6

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~  184 (285)
                      .+.+++++++.... .+|+.|||..||+|..+.+..+.+.+.+|+|++++.++.|++++.
T Consensus       193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            34577777777665 468899999999999999988889999999999999999999985

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.003  Score=55.29  Aligned_cols=90  Identities=20%  Similarity=0.306  Sum_probs=58.6

Q ss_pred             HHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEE-EcccccccchhhhhhH
Q 023240          132 QLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHMLSL  208 (285)
Q Consensus       132 ~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~-~gD~~~~~~~~~~~d~  208 (285)
                      ..++...+. ++..+||||+-||.+|..+.++| .+|+|||.....+..   .++..+++... ..|+..+...+     
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~rV~~~E~tN~r~l~~~~-----  140 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPRVIVLERTNVRYLTPED-----  140 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCcEEEEecCChhhCCHHH-----
Confidence            344444443 67899999999999999999996 489999987543322   33334555544 34565554321     


Q ss_pred             HhhhcCCCCceEEEEcCCCCCcHHHH
Q 023240          209 FERRKSSSGFAKVVANIPFNISTDVI  234 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~~~~~i~  234 (285)
                           -....|+++++..|-....++
T Consensus       141 -----~~~~~d~~v~DvSFISL~~iL  161 (245)
T COG1189         141 -----FTEKPDLIVIDVSFISLKLIL  161 (245)
T ss_pred             -----cccCCCeEEEEeehhhHHHHH
Confidence                 123678999988876555433

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.10  E-value=0.0022  Score=55.85  Aligned_cols=102  Identities=14%  Similarity=0.205  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCC------CCCEEEEEcCcccHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEc
Q 023240          127 SEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID----QLKVLQE  194 (285)
Q Consensus       127 ~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~t~~la~--~~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~g  194 (285)
                      .+.+..+..+|...      +.-++||||.|.-.+--.+--  .|.+.+|-|+|+..++.|+.++..++    .|++...
T Consensus        58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q  137 (292)
T COG3129          58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ  137 (292)
T ss_pred             hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence            45556666665422      345799999887665433332  37799999999999999999998774    4555443


Q ss_pred             ccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~  235 (285)
                      .=.+--+.    +++   .....||...+||||+...+-..
T Consensus       138 k~~~~if~----gii---g~nE~yd~tlCNPPFh~s~~da~  171 (292)
T COG3129         138 KDSDAIFN----GII---GKNERYDATLCNPPFHDSAADAR  171 (292)
T ss_pred             cCcccccc----ccc---cccceeeeEecCCCcchhHHHHH
Confidence            22111111    111   23467999999999998765543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.02  E-value=0.0012  Score=54.56  Aligned_cols=50  Identities=8%  Similarity=0.171  Sum_probs=39.2

Q ss_pred             EEEeCCHHHHHHHHHHhhcC-----CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          167 LAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       167 ~giD~~~~~v~~a~~~~~~~-----~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +|+|+|++|++.|+++....     .+++++++|+.++|+            ..+.||.|+++.-++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------------~~~~fD~v~~~~~l~   55 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------------DDCEFDAVTMGYGLR   55 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------------CCCCeeEEEecchhh
Confidence            48999999999998765421     379999999999874            456799998875443

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.00  E-value=0.003  Score=54.78  Aligned_cols=71  Identities=14%  Similarity=0.119  Sum_probs=49.0

Q ss_pred             CCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC-CC-eEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~-~~-v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ..++||.|+|+|..|..+... -.+|..||.++.+++.|++.+... ++ .++.+....++.            +....|
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------------P~~~~Y  123 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------------PEEGKY  123 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-E
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc------------CCCCcE
Confidence            468999999999999876544 568999999999999999887652 23 456666666664            345789


Q ss_pred             eEEEEc
Q 023240          219 AKVVAN  224 (285)
Q Consensus       219 D~Vv~n  224 (285)
                      |+|...
T Consensus       124 DlIW~Q  129 (218)
T PF05891_consen  124 DLIWIQ  129 (218)
T ss_dssp             EEEEEE
T ss_pred             eEEEeh
Confidence            999885

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.97  E-value=0.0046  Score=55.82  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=38.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID  187 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~  187 (285)
                      .+.+|||+|||.|..+.++...   -.+++++|.|+.|++.++..+...+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~   82 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP   82 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence            5779999999999877665553   3489999999999999998776543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PHA01634 hypothetical protein

Probab=96.91  E-value=0.0022  Score=50.88  Aligned_cols=46  Identities=24%  Similarity=0.219  Sum_probs=41.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI  186 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~  186 (285)
                      .+++|+|||++.|.+++.++-+|+ +|+++|.++...+..+++.+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            578999999999999999999875 7999999999999999988754

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.91  E-value=0.0025  Score=58.08  Aligned_cols=81  Identities=22%  Similarity=0.341  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC----C----CeEEEEcccccccchhhhhhHHh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~----~----~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      .+++.++|+|||-|.-.+..-+.| .+++|+||.+-.++.|++++...    .    .+.++.+|.....+.    |+++
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~----d~~e  191 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLM----DLLE  191 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHH----Hhcc
Confidence            467889999999999887776665 58999999999999999988742    1    478999998765533    2221


Q ss_pred             hhcCCCCceEEEEcCC
Q 023240          211 RRKSSSGFAKVVANIP  226 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P  226 (285)
                        .+.++||+|=+--.
T Consensus       192 --~~dp~fDivScQF~  205 (389)
T KOG1975|consen  192 --FKDPRFDIVSCQFA  205 (389)
T ss_pred             --CCCCCcceeeeeee
Confidence              23344899876544

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.91  E-value=0.0016  Score=61.55  Aligned_cols=57  Identities=33%  Similarity=0.473  Sum_probs=48.3

Q ss_pred             EEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~  200 (285)
                      .|||||+|||-++...++.|+ .|+|+|.-.+|.+.|++-..++|   +|+++.---.++.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence            699999999999998888865 79999999999999999998875   7888765554443

>PRK13699 putative methylase; Provisional

Probab=96.90  E-value=0.0041  Score=54.63  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      ..+.++.+.+++... .+|+.|||.-||+|..+.+..+.+.+.+|+|++++.++.+.++++.
T Consensus       147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            345677777776554 3688999999999999999888899999999999999999998864

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.88  E-value=0.0064  Score=52.33  Aligned_cols=79  Identities=22%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCe-EEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQL-KVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v-~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +.+|||||||||..+..+|+.  ...-.--|.++......+......  +|+ .-+.-|+.+-+..-..    .+.....
T Consensus        26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~----~~~~~~~  101 (204)
T PF06080_consen   26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL----PAPLSPE  101 (204)
T ss_pred             CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc----ccccCCC
Confidence            336999999999999999987  567778899988876666655543  243 2345565544221000    0001345


Q ss_pred             CceEEEEc
Q 023240          217 GFAKVVAN  224 (285)
Q Consensus       217 ~~D~Vv~n  224 (285)
                      .||.|++.
T Consensus       102 ~~D~i~~~  109 (204)
T PF06080_consen  102 SFDAIFCI  109 (204)
T ss_pred             Ccceeeeh
Confidence            79999884

The function of this family is unknown.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.0058  Score=52.59  Aligned_cols=74  Identities=18%  Similarity=0.337  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++..|+|+|+..|..+..+++. +  ..|+|||+.|         .+..++|.++.+|+.+-+..+.....    ....
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~~V~~iq~d~~~~~~~~~l~~~----l~~~  110 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIPGVIFLQGDITDEDTLEKLLEA----LGGA  110 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCCCceEEeeeccCccHHHHHHHH----cCCC
Confidence            36789999999999999999887 3  3599999985         23335799999999987654332222    3344


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      .+|+|++++.
T Consensus       111 ~~DvV~sD~a  120 (205)
T COG0293         111 PVDVVLSDMA  120 (205)
T ss_pred             CcceEEecCC
Confidence            5799998744

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.78  E-value=0.031  Score=50.26  Aligned_cols=40  Identities=25%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHH
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR  180 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~  180 (285)
                      .+.+||=.|||.|.++-.+|..|..+.|.|.|--|+-...
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~   95 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN   95 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH
Confidence            4568999999999999999999999999999999865544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.003  Score=51.40  Aligned_cols=75  Identities=13%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~  201 (285)
                      .+-++.++..+.-.+..+.+|+|+|.|.+-.+.++.+ ..-+|+|+|+..+.+++-+.-..   ...++..-|..+.++
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl  136 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL  136 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence            4456667777777776799999999999999999987 58999999999999998765433   367888888877764

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.76  E-value=0.004  Score=56.74  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             EEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv  222 (285)
                      +++|+.||.|.++..+...|. .|.++|+++.+++.-+.|+.     ....+|+.++...+         .+. .+|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~---------l~~-~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSD---------LPK-DVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHH---------HHH-T-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----cccccccccccccc---------ccc-cceEEE
Confidence            689999999999999999885 68999999999999999984     88999999886431         122 589999


Q ss_pred             EcCC
Q 023240          223 ANIP  226 (285)
Q Consensus       223 ~n~P  226 (285)
                      +.||
T Consensus        67 ggpP   70 (335)
T PF00145_consen   67 GGPP   70 (335)
T ss_dssp             EE--
T ss_pred             eccC
Confidence            9988

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.73  E-value=0.0019  Score=56.27  Aligned_cols=78  Identities=10%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             CCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      .+.++|||||-|++...+...+ .+++-+|.|..|++.++..-...-.+....+|-+.+++            .+.++|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf------------~ens~DL  140 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDF------------KENSVDL  140 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccc------------cccchhh
Confidence            4689999999999999998875 58999999999999988653211144567788777775            4567888


Q ss_pred             EEEcCCCCCcH
Q 023240          221 VVANIPFNIST  231 (285)
Q Consensus       221 Vv~n~P~~~~~  231 (285)
                      ||+.+..++..
T Consensus       141 iisSlslHW~N  151 (325)
T KOG2940|consen  141 IISSLSLHWTN  151 (325)
T ss_pred             hhhhhhhhhhc
Confidence            88877766554

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.67  E-value=0.012  Score=54.39  Aligned_cols=66  Identities=17%  Similarity=0.335  Sum_probs=49.9

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHhh--cCCCeEE--EEcccccc
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC  199 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~V~giD~~~~~v~~a~~~~~--~~~~v~~--~~gD~~~~  199 (285)
                      .|...+.  ++..++|+|||.|.=+..+.+.      ....++||+|.++++.+..++.  ..+.+++  ++||+.+.
T Consensus        69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            4444443  5668999999999977665542      3579999999999999999987  3366655  88988664

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.63  E-value=0.0041  Score=53.61  Aligned_cols=106  Identities=15%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             cccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCEEEEEeCCHHHHHHHH-HHhhcCCCe
Q 023240          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVR-ERFASIDQL  189 (285)
Q Consensus       117 ~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~V~giD~~~~~v~~a~-~~~~~~~~v  189 (285)
                      .|.|...+..+.-...+.+.+-..+++.|+|+|.-.|.+++.+|..      .++|+|||++-+...... +...-.++|
T Consensus         8 ~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI   87 (206)
T PF04989_consen    8 SWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI   87 (206)
T ss_dssp             EETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred             cCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence            4566655555544444444443336789999999999999888763      369999999755443322 211112589


Q ss_pred             EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      +++.||..+....+...+.    ...+...+||-+.-
T Consensus        88 ~~i~Gds~d~~~~~~v~~~----~~~~~~vlVilDs~  120 (206)
T PF04989_consen   88 TFIQGDSIDPEIVDQVREL----ASPPHPVLVILDSS  120 (206)
T ss_dssp             EEEES-SSSTHHHHTSGSS--------SSEEEEESS-
T ss_pred             EEEECCCCCHHHHHHHHHh----hccCCceEEEECCC
Confidence            9999999876543222211    23355678887765

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.63  E-value=0.034  Score=50.20  Aligned_cols=86  Identities=23%  Similarity=0.283  Sum_probs=50.8

Q ss_pred             CCEEEEEcCcccHHH-HHHHHh---CCEEEEEeCCHHHHHHHHHHhhc-C---CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          142 GDIVLEIGPGTGSLT-NVLLNA---GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t-~~la~~---~~~V~giD~~~~~v~~a~~~~~~-~---~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      +.+|+=||||.=-+| +.+++.   +..|+++|+++++++.+++-++. .   .+++++.+|+.+.+            .
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~------------~  188 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT------------Y  188 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-------------G
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc------------c
Confidence            459999999965554 555544   46899999999999999987762 2   38999999998765            2


Q ss_pred             CCCCceEEEEcCCCC----CcHHHHHHhcc
Q 023240          214 SSSGFAKVVANIPFN----ISTDVIKQLLP  239 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~----~~~~i~~~l~~  239 (285)
                      +...||+|+...--.    .-.+++.+|..
T Consensus       189 dl~~~DvV~lAalVg~~~e~K~~Il~~l~~  218 (276)
T PF03059_consen  189 DLKEYDVVFLAALVGMDAEPKEEILEHLAK  218 (276)
T ss_dssp             G----SEEEE-TT-S----SHHHHHHHHHH
T ss_pred             ccccCCEEEEhhhcccccchHHHHHHHHHh
Confidence            346789887764444    44567776653

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.56  E-value=0.066  Score=48.47  Aligned_cols=60  Identities=18%  Similarity=0.141  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--C--CEEEEEeCCHHHHHHHHHHhhcCC--Ce-EEEEcccccc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--G--ATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKC  199 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~--~~V~giD~~~~~v~~a~~~~~~~~--~v-~~~~gD~~~~  199 (285)
                      ..+-+||||.||.|.+.+-....  .  .+|.-.|.++..++..++.++..+  ++ +|.++|+.+.
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            35679999999999988766654  2  489999999999999999988754  55 9999999874

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.49  E-value=0.015  Score=50.45  Aligned_cols=58  Identities=17%  Similarity=0.151  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~  198 (285)
                      .+..+.||||--||+...+.+.+  ..+++.|+++..++.|.+++.+++   .+++..+|.+.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~   78 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA   78 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence            45569999999999999998873  589999999999999999998764   78888888754

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.46  E-value=0.021  Score=49.02  Aligned_cols=41  Identities=22%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCcccH--HHH--HHHHh-----C--CEEEEEeCCHHHHHHHHH
Q 023240          141 EGDIVLEIGPGTGS--LTN--VLLNA-----G--ATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       141 ~~~~VLDiGcG~G~--~t~--~la~~-----~--~~V~giD~~~~~v~~a~~  181 (285)
                      +.-+|+..||++|.  +++  .+.+.     +  .+|+|.|+|+.+++.|++
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            45689999999998  333  33441     1  489999999999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.42  E-value=0.037  Score=42.51  Aligned_cols=71  Identities=28%  Similarity=0.449  Sum_probs=48.3

Q ss_pred             EEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCCC--eEEEEccccc--ccchhhhhhHHhhhcCCCC
Q 023240          145 VLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK--CHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       145 VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~~--v~~~~gD~~~--~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++|+|||+|..+ .++...   ..++++|.++.+++.++........  +.+..+|...  .++.           ....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~  119 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFE-----------DSAS  119 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCC-----------CCCc
Confidence            999999999977 444432   4899999999999986655433111  6888888776  4431           1136


Q ss_pred             ceEEEEcCCC
Q 023240          218 FAKVVANIPF  227 (285)
Q Consensus       218 ~D~Vv~n~P~  227 (285)
                      +|.+......
T Consensus       120 ~d~~~~~~~~  129 (257)
T COG0500         120 FDLVISLLVL  129 (257)
T ss_pred             eeEEeeeeeh
Confidence            7888544443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.39  E-value=0.0066  Score=55.91  Aligned_cols=67  Identities=22%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             EEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEE
Q 023240          145 VLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       145 VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                      |+|+.||.|.++..+.+.|.+ +.++|+++.+++..+.|+.   + .++.+|+.++...           +.+.+|++++
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~-----------~~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPS-----------DIPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhh-----------hCCCcCEEEe
Confidence            689999999999999888876 5679999999999998874   3 5667888887532           2245799999


Q ss_pred             cCC
Q 023240          224 NIP  226 (285)
Q Consensus       224 n~P  226 (285)
                      .||
T Consensus        66 g~P   68 (315)
T TIGR00675        66 GFP   68 (315)
T ss_pred             cCC
Confidence            988

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.39  E-value=0.01  Score=55.90  Aligned_cols=85  Identities=14%  Similarity=0.229  Sum_probs=68.7

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhH
Q 023240          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      +..+.++++.+|||..+..|.=|.++|..   .+.|+|.|.+...+...+.|+...+  |..+...|..++|-.      
T Consensus       234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~------  307 (460)
T KOG1122|consen  234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEK------  307 (460)
T ss_pred             eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccc------
Confidence            34567789999999999999988888876   4689999999999999999998775  778888898876522      


Q ss_pred             HhhhcCCCCceEEEEcCCCC
Q 023240          209 FERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~  228 (285)
                          .-+++||.|+.+.|=+
T Consensus       308 ----~~~~~fDRVLLDAPCS  323 (460)
T KOG1122|consen  308 ----EFPGSFDRVLLDAPCS  323 (460)
T ss_pred             ----ccCcccceeeecCCCC
Confidence                1234799999987743

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.38  E-value=0.0068  Score=58.39  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcC--CCC--CEEEEEcCcccHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHhhcCCCeEEEEcc--cc
Q 023240          127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAI---EKDQHMVGLVRERFASIDQLKVLQED--FV  197 (285)
Q Consensus       127 ~~~~~~l~~~l~~--~~~--~~VLDiGcG~G~~t~~la~~~~~V~gi---D~~~~~v~~a~~~~~~~~~v~~~~gD--~~  197 (285)
                      ...++.|.+.+..  ..+  ..+||+|||+|.++..|..++..+.++   |..+..++.|.++     .+-.+.+-  ..
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-----Gvpa~~~~~~s~  173 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-----GVPAMIGVLGSQ  173 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-----Ccchhhhhhccc
Confidence            4556666666655  233  479999999999999999987654444   3345556666554     23233222  46


Q ss_pred             cccchhhhhhHHhh
Q 023240          198 KCHIRSHMLSLFER  211 (285)
Q Consensus       198 ~~~~~~~~~d~~~~  211 (285)
                      .+|+++..||++++
T Consensus       174 rLPfp~~~fDmvHc  187 (506)
T PF03141_consen  174 RLPFPSNAFDMVHC  187 (506)
T ss_pred             cccCCccchhhhhc
Confidence            78888888888875

; GO: 0008168 methyltransferase activity

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.36  E-value=0.012  Score=51.99  Aligned_cols=60  Identities=25%  Similarity=0.330  Sum_probs=45.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEccccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH  200 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~  200 (285)
                      .+.+|+|||||.=-++......  +..++|+|+|..+++....-+...+ +.++...|...-+
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~  167 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP  167 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence            4789999999999999876554  5799999999999999998876554 7788888887654

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=96.32  E-value=0.018  Score=56.43  Aligned_cols=98  Identities=21%  Similarity=0.352  Sum_probs=69.8

Q ss_pred             cccCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHh---C---CEEEEEeCCHHHHHHHHHHhhcC----CCe
Q 023240          122 HYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFASI----DQL  189 (285)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~---~---~~V~giD~~~~~v~~a~~~~~~~----~~v  189 (285)
                      .+.++.+++..+.+.+.+.  ++..|.|.-||+|.+.......   +   ..++|.|....+...++.+..-.    +..
T Consensus       196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~  275 (501)
T TIGR00497       196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF  275 (501)
T ss_pred             eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence            3888999999998887754  4578999999999987654331   1   36999999999999999885322    133


Q ss_pred             EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      ....+|-+.-+      |+    .....||.|++||||..
T Consensus       276 ~~~~~dtl~~~------d~----~~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       276 NIINADTLTTK------EW----ENENGFEVVVSNPPYSI  305 (501)
T ss_pred             CcccCCcCCCc------cc----cccccCCEEeecCCccc
Confidence            44455544322      11    12356899999999964

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.21  E-value=0.0047  Score=55.77  Aligned_cols=91  Identities=23%  Similarity=0.321  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCcccHHHH-HHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTN-VLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~-~la~~~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+..|.|+.+|.||+|. .+..+| ..|+++|.+|..++.++++++.++   ...+++||-...-             ..
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-------------~~  260 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-------------PR  260 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-------------cc
Confidence            35789999999999999 666665 489999999999999999998763   5567777766542             23


Q ss_pred             CCceEEEEc-CCCC--CcHHHHHHhccCCCce
Q 023240          216 SGFAKVVAN-IPFN--ISTDVIKQLLPMGDIF  244 (285)
Q Consensus       216 ~~~D~Vv~n-~P~~--~~~~i~~~l~~~g~~~  244 (285)
                      ...|.|... +|-.  ...-.++.|.+.|+.+
T Consensus       261 ~~AdrVnLGLlPSse~~W~~A~k~Lk~eggsi  292 (351)
T KOG1227|consen  261 LRADRVNLGLLPSSEQGWPTAIKALKPEGGSI  292 (351)
T ss_pred             ccchheeeccccccccchHHHHHHhhhcCCcE
Confidence            456776554 5532  2334566777766644

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.21  E-value=0.034  Score=47.66  Aligned_cols=96  Identities=15%  Similarity=0.199  Sum_probs=71.5

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          138 AVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+.++.+||=+|+.+|....+++.- + +.++|||.+++....+-...++.+|+--+.+|+..-.-.   ..      --
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y---~~------~V  143 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKY---RH------LV  143 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHh---hh------hc
Confidence            4668999999999999999999986 3 689999999998887777777678999999999764311   11      12


Q ss_pred             CCceEEEEcCCCCCcHHHH----HHhccCCC
Q 023240          216 SGFAKVVANIPFNISTDVI----KQLLPMGD  242 (285)
Q Consensus       216 ~~~D~Vv~n~P~~~~~~i~----~~l~~~g~  242 (285)
                      ...|+|+.+...-...+++    +.+++.++
T Consensus       144 e~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G  174 (231)
T COG1889         144 EKVDVIYQDVAQPNQAEILADNAEFFLKKGG  174 (231)
T ss_pred             ccccEEEEecCCchHHHHHHHHHHHhcccCC
Confidence            4589999887665555554    34555555

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.19  E-value=0.011  Score=51.02  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             ccCCHHHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhc
Q 023240          123 YMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      +..+-.++..+.+..    .-..+-++.|..||.|++.-.+.-.    -..|+|-|+|+++++.|++|+.-
T Consensus        29 p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L   99 (246)
T PF11599_consen   29 PAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL   99 (246)
T ss_dssp             ----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence            334445555555443    2334568999999999987666543    24899999999999999988753

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.14  E-value=0.02  Score=53.28  Aligned_cols=75  Identities=20%  Similarity=0.311  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhh--c-------CCCeEEEEcccccccchhhhhhHH
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--S-------IDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~--~-------~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ...+||=+|-|-|-....+.+.  -.+++-+|.||+|++.++++..  +       .++++++..|+.++--        
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr--------  360 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR--------  360 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH--------
Confidence            4578999999999999999887  3589999999999999995432  1       1489999999987632        


Q ss_pred             hhhcCCCCceEEEEcCC
Q 023240          210 ERRKSSSGFAKVVANIP  226 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P  226 (285)
                         .....||.||.+.|
T Consensus       361 ---~a~~~fD~vIVDl~  374 (508)
T COG4262         361 ---TAADMFDVVIVDLP  374 (508)
T ss_pred             ---hhcccccEEEEeCC
Confidence               24468999999866

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.08  E-value=0.0039  Score=58.71  Aligned_cols=81  Identities=12%  Similarity=0.229  Sum_probs=62.3

Q ss_pred             cccCCcccCCHHHH--HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---C-CeE
Q 023240          117 KSLGQHYMLNSEIN--DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---D-QLK  190 (285)
Q Consensus       117 ~~~g~~~~~~~~~~--~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~-~v~  190 (285)
                      -.||..|+-++-..  .++..  -.++|..|.|+.||.|-+++.++..++.|++-|.++++++.++.|++.+   + +++
T Consensus       225 ~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~ie  302 (495)
T KOG2078|consen  225 FDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIE  302 (495)
T ss_pred             EecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhhee
Confidence            34566554433222  22222  3347889999999999999999999999999999999999999999865   2 589


Q ss_pred             EEEcccccc
Q 023240          191 VLQEDFVKC  199 (285)
Q Consensus       191 ~~~gD~~~~  199 (285)
                      ++..|+.+.
T Consensus       303 i~Nmda~~F  311 (495)
T KOG2078|consen  303 IFNMDAKDF  311 (495)
T ss_pred             eecccHHHH
Confidence            999888654

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.08  E-value=0.031  Score=50.80  Aligned_cols=60  Identities=17%  Similarity=0.150  Sum_probs=39.7

Q ss_pred             ccCCHHHHHHHHHHhcCC-CCCEEEEEcCcccH--HHHHH--HHh------CCEEEEEeCCHHHHHHHHHH
Q 023240          123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS--LTNVL--LNA------GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~--~t~~l--a~~------~~~V~giD~~~~~v~~a~~~  182 (285)
                      |+-++...+.+.+.+... ..-+|+..||+||.  ++++|  .+.      ..+|+|+|+|+.+++.|++-
T Consensus        96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611         96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            444444444444433222 23599999999998  44444  332      24799999999999999864

>PRK10458 DNA cytosine methylase; Provisional

Probab=96.00  E-value=0.055  Score=52.49  Aligned_cols=86  Identities=14%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             CEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh----hhHHhhh-cCCC
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSSS  216 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~----~d~~~~~-~~~~  216 (285)
                      -+++|+.||.|.+...+-..|. -|.++|+++.+++.-+.|+...+....+.+|+.++...+..    .+..... ...+
T Consensus        89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p  168 (467)
T PRK10458         89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIP  168 (467)
T ss_pred             ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCC
Confidence            4899999999999999988776 57889999999999888874334556677888877532110    0000000 1124


Q ss_pred             CceEEEEcCCCC
Q 023240          217 GFAKVVANIPFN  228 (285)
Q Consensus       217 ~~D~Vv~n~P~~  228 (285)
                      ..|++++.||=+
T Consensus       169 ~~DvL~gGpPCQ  180 (467)
T PRK10458        169 DHDVLLAGFPCQ  180 (467)
T ss_pred             CCCEEEEcCCCC
Confidence            579999998843

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.86  E-value=0.03  Score=47.46  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEc-ccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~g-D~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.+|||+||..|..+....++   .+.|.|||+-         ++..-+.+.++.+ |+.+-...   ..+.++ .+..
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~~Ga~~i~~~dvtdp~~~---~ki~e~-lp~r  135 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPPEGATIIQGNDVTDPETY---RKIFEA-LPNR  135 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCCCCcccccccccCCHHHH---HHHHHh-CCCC
Confidence            6889999999999999887765   4689999975         3333346777777 66664322   233333 3556


Q ss_pred             CceEEEEcCCC
Q 023240          217 GFAKVVANIPF  227 (285)
Q Consensus       217 ~~D~Vv~n~P~  227 (285)
                      ..|+|++++.-
T Consensus       136 ~VdvVlSDMap  146 (232)
T KOG4589|consen  136 PVDVVLSDMAP  146 (232)
T ss_pred             cccEEEeccCC
Confidence            78999998554

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.79  E-value=0.047  Score=47.19  Aligned_cols=92  Identities=14%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh
Q 023240          127 SEINDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (285)
                      ..-++.+++++.-.+ ...|.|+|||.+.++..+. .+.+|...|+..             .|-.++.+|+..+|+    
T Consensus        57 ~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva-------------~n~~Vtacdia~vPL----  118 (219)
T PF05148_consen   57 VNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA-------------PNPRVTACDIANVPL----  118 (219)
T ss_dssp             S-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS--------------SSTTEEES-TTS-S-----
T ss_pred             CCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccC-------------CCCCEEEecCccCcC----
Confidence            334567777776554 4689999999999996643 356899999763             123478899999996    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCCc--HHHH---HHhccCCCce
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNIS--TDVI---KQLLPMGDIF  244 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~---~~l~~~g~~~  244 (285)
                              +.+..|++|..+..-.+  .+.+   .+++..++.+
T Consensus       119 --------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L  154 (219)
T PF05148_consen  119 --------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGIL  154 (219)
T ss_dssp             ---------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEE
T ss_pred             --------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEE
Confidence                    44778998887665322  2222   3555555544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=95.78  E-value=0.022  Score=51.98  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=54.8

Q ss_pred             EEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          145 VLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       145 VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      =+|||+|+-.+--.+...  +...+++|+++..+..|+.|+.+++   .+.+++-...+.-+.+    .+.. .....||
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d----~~~~-~~e~~yd  180 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMD----ALKE-ESEIIYD  180 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchh----hhcc-Cccceee
Confidence            378887766655444333  6789999999999999999998764   6777766554332211    1111 1234599


Q ss_pred             EEEEcCCCCCc
Q 023240          220 KVVANIPFNIS  230 (285)
Q Consensus       220 ~Vv~n~P~~~~  230 (285)
                      .+.+||||...
T Consensus       181 FcMcNPPFfe~  191 (419)
T KOG2912|consen  181 FCMCNPPFFEN  191 (419)
T ss_pred             EEecCCchhhc
Confidence            99999999765

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.78  E-value=0.031  Score=51.72  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC-Cce
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS-GFA  219 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~-~~D  219 (285)
                      ..+++|+.||.|.+...+...|. -+.++|+++.+++.-+.|+.   .-.++.+|+.++....          ... .+|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~---~~~~~~~di~~~~~~~----------~~~~~~D   69 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP---HGDIILGDIKELDGEA----------LRKSDVD   69 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC---CCceeechHhhcChhh----------ccccCCC
Confidence            35799999999999999988886 47889999999999999975   2567778887765321          112 789


Q ss_pred             EEEEcCCC
Q 023240          220 KVVANIPF  227 (285)
Q Consensus       220 ~Vv~n~P~  227 (285)
                      ++++.||=
T Consensus        70 vligGpPC   77 (328)
T COG0270          70 VLIGGPPC   77 (328)
T ss_pred             EEEeCCCC
Confidence            99999884

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=95.57  E-value=0.045  Score=48.69  Aligned_cols=93  Identities=11%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHhcCCCC-CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240          125 LNSEINDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~-~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (285)
                      ++..-++.+++.+...++ ..|.|+|||.+.++.   ..-.+|...|+..             .|-+++.+|+.++|+. 
T Consensus       163 WP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~-  225 (325)
T KOG3045|consen  163 WPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLE-  225 (325)
T ss_pred             CCCChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCc-
Confidence            344446777888776654 579999999999876   3346799998652             2567899999999964 


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCC--cHH---HHHHhccCCCcee
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNI--STD---VIKQLLPMGDIFS  245 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~--~~~---i~~~l~~~g~~~~  245 (285)
                                 ..+.|++|.-+..-.  ..+   ...+++..|+.+.
T Consensus       226 -----------d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~  261 (325)
T KOG3045|consen  226 -----------DESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLY  261 (325)
T ss_pred             -----------cCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEE
Confidence                       466788776544321  122   2346777777664

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.50  E-value=0.032  Score=49.08  Aligned_cols=100  Identities=14%  Similarity=0.128  Sum_probs=69.6

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+.++++.+||=+|+++|+.-.....-   ..-|++||.+...=..+-.-.++..||--+.-|+....-.-         
T Consensus       151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR---------  221 (317)
T KOG1596|consen  151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR---------  221 (317)
T ss_pred             ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee---------
Confidence            345668999999999999999888876   35799999987665555444444468888888886532100         


Q ss_pred             cCCCCceEEEEcCCCCCcHHHH----HHhccCCCce
Q 023240          213 KSSSGFAKVVANIPFNISTDVI----KQLLPMGDIF  244 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~~i~----~~l~~~g~~~  244 (285)
                      ..-+..|+||++.+.....+++    ..++..++.|
T Consensus       222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhf  257 (317)
T KOG1596|consen  222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHF  257 (317)
T ss_pred             eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeE
Confidence            1235789999997765555554    3555666655

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.36  E-value=0.01  Score=45.19  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=24.7

Q ss_pred             EEEcCcccHHHHHHHHh---C--CEEEEEeCCHH---HHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       146 LDiGcG~G~~t~~la~~---~--~~V~giD~~~~---~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ||||+..|.++..+++.   .  .+++++|..+.   .-+..++ ....++++++.+|..+.-. .         ....+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~-~---------~~~~~   69 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLP-S---------LPDGP   69 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH-H---------HHH--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHH-H---------cCCCC
Confidence            69999999999988864   2  37999999984   3333332 1222489999999966421 0         12367


Q ss_pred             ceEEEEcCCC
Q 023240          218 FAKVVANIPF  227 (285)
Q Consensus       218 ~D~Vv~n~P~  227 (285)
                      +|+++.+-..
T Consensus        70 ~dli~iDg~H   79 (106)
T PF13578_consen   70 IDLIFIDGDH   79 (106)
T ss_dssp             EEEEEEES--
T ss_pred             EEEEEECCCC
Confidence            9999998653

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.24  E-value=0.0074  Score=51.87  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=57.9

Q ss_pred             HhCCCCCccccCCcccCCHHHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Q 023240          109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       109 ~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~  182 (285)
                      .+..+..-..+|..|+.+++--++++..-.+.   .+.++||+|+|.|.++..|+..-.+|++.|.|..|....++.
T Consensus        77 s~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen   77 SQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             hhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence            33345545567888998888877776655332   357999999999999999998767899999999999988765

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.12  E-value=0.19  Score=42.88  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=60.2

Q ss_pred             cccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHhhcCCCeE
Q 023240          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLK  190 (285)
Q Consensus       117 ~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~--~~V~giD~~~~~v~~a~~~~~~~~~v~  190 (285)
                      .|.|...+..+.-...+.+.+-..++..|+|+|.-.|.+++..|..    |  .+|+++|+|-..+..+...   .+.|.
T Consensus        45 twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~  121 (237)
T COG3510          45 TWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDIL  121 (237)
T ss_pred             eEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeE
Confidence            4567766666665555555555557889999999999999988864    4  6999999986655444433   36899


Q ss_pred             EEEcccccccc
Q 023240          191 VLQEDFVKCHI  201 (285)
Q Consensus       191 ~~~gD~~~~~~  201 (285)
                      +++|+..+...
T Consensus       122 f~egss~dpai  132 (237)
T COG3510         122 FIEGSSTDPAI  132 (237)
T ss_pred             EEeCCCCCHHH
Confidence            99999887653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.47  E-value=0.3  Score=45.36  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=57.9

Q ss_pred             hcCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcc-cccccchhhhhhHHhhhc
Q 023240          137 AAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQED-FVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       137 l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD-~~~~~~~~~~~d~~~~~~  213 (285)
                      ...+++++|+=+|+| .|.++..+|+. +++|+++|++++-.+.|++.-    .-.++.+. .....            .
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG----Ad~~i~~~~~~~~~------------~  225 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG----ADHVINSSDSDALE------------A  225 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC----CcEEEEcCCchhhH------------H
Confidence            456688888888877 45577888885 899999999999999998763    23344432 11111            0


Q ss_pred             CCCCceEEEEcCCCCCcHHHHHHhccCCCce
Q 023240          214 SSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~  244 (285)
                      -.+.+|+|+...|.....+.++.|..+|.+.
T Consensus       226 ~~~~~d~ii~tv~~~~~~~~l~~l~~~G~~v  256 (339)
T COG1064         226 VKEIADAIIDTVGPATLEPSLKALRRGGTLV  256 (339)
T ss_pred             hHhhCcEEEECCChhhHHHHHHHHhcCCEEE
Confidence            1123888888766333344455554444443

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=94.40  E-value=0.14  Score=48.01  Aligned_cols=41  Identities=34%  Similarity=0.487  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~  181 (285)
                      +-+.|.|+|+|.|+++..|+-. +..|.|||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            3478999999999999999876 8899999999877776653

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.30  E-value=0.048  Score=46.84  Aligned_cols=58  Identities=24%  Similarity=0.358  Sum_probs=46.6

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---------CCeEEEEcccccc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQEDFVKC  199 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---------~~v~~~~gD~~~~  199 (285)
                      .-.+.|||||-|.+...++..  ..-+.|.||-....++.+.++.+.         .|+.+.+.++...
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~  129 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF  129 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence            346999999999999999987  568999999888888877776532         3788888887664

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=94.24  E-value=0.21  Score=39.69  Aligned_cols=75  Identities=13%  Similarity=0.308  Sum_probs=43.0

Q ss_pred             CCCEEEEEcCcccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          141 EGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       141 ~~~~VLDiGcG~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      ...+|.|+|-|.=. .+..|++.|..|+++|+++.       +..  ..+.++..|+.+-.+.     +      =...|
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~--~g~~~v~DDif~P~l~-----i------Y~~a~   72 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP--EGVNFVVDDIFNPNLE-----I------YEGAD   72 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HH-----H------HTTEE
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc--cCcceeeecccCCCHH-----H------hcCCc
Confidence            34599999988655 56667777999999999987       111  3688999999875431     1      13568


Q ss_pred             EEEE-cCCCCCcHHHHH
Q 023240          220 KVVA-NIPFNISTDVIK  235 (285)
Q Consensus       220 ~Vv~-n~P~~~~~~i~~  235 (285)
                      +|.+ +||-....++++
T Consensus        73 lIYSiRPP~El~~~il~   89 (127)
T PF03686_consen   73 LIYSIRPPPELQPPILE   89 (127)
T ss_dssp             EEEEES--TTSHHHHHH
T ss_pred             EEEEeCCChHHhHHHHH
Confidence            9988 688887777665

; PDB: 2K4M_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=94.19  E-value=0.15  Score=47.51  Aligned_cols=89  Identities=24%  Similarity=0.269  Sum_probs=65.3

Q ss_pred             HHhcCCCCCEEEEEcCcccHHHHHHHHhCC------EEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhh
Q 023240          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~~~------~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~  206 (285)
                      -.+.++++++|||..+..|.-|+.+.+..+      .|++=|.+...+.......+..  +++.+...|+...|-.... 
T Consensus       149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-  227 (375)
T KOG2198|consen  149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-  227 (375)
T ss_pred             hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-
Confidence            345677999999999999999988887632      8999999999999998887654  3777777887766532100 


Q ss_pred             hHHhhhcCCCCceEEEEcCC
Q 023240          207 SLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      ++-+  .....||.|+++-|
T Consensus       228 ~~~~--~~~~~fDrVLvDVP  245 (375)
T KOG2198|consen  228 DGND--KEQLKFDRVLVDVP  245 (375)
T ss_pred             cCch--hhhhhcceeEEecc
Confidence            1100  13356999999866

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.18  E-value=0.51  Score=42.90  Aligned_cols=94  Identities=18%  Similarity=0.224  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .|+.||==|.|.|-   ++..+|+++++++-.|++++..+...+.+++.|.+.....|..+..--....+-++  .+-+.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk--~e~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK--KEVGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence            57889998888876   67777888999999999999999988888776788899999887653334444444  34567


Q ss_pred             ceEEEEcC-------CCCCcHHHHHH
Q 023240          218 FAKVVANI-------PFNISTDVIKQ  236 (285)
Q Consensus       218 ~D~Vv~n~-------P~~~~~~i~~~  236 (285)
                      .|++|-|.       -++...+.+++
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k  140 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQK  140 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHH
Confidence            88888872       24455555554

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.18  E-value=0.2  Score=46.71  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             CCEEEEEcCcccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhcC-C-CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~~-~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +.+|+|.-+|+|.=++..|.. +. +|+.-|+|+.+++.+++|++.+ + +..+++.|+..+-.           .....
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~-----------~~~~~  121 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH-----------ELHRA  121 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH-----------hcCCC
Confidence            679999999999999998876 44 8999999999999999999977 3 67777788877642           22366


Q ss_pred             ceEEEEcCCCCCcHHHHH
Q 023240          218 FAKVVANIPFNISTDVIK  235 (285)
Q Consensus       218 ~D~Vv~n~P~~~~~~i~~  235 (285)
                      ||+|=.+ ||.-+.|+++
T Consensus       122 fd~IDiD-PFGSPaPFlD  138 (380)
T COG1867         122 FDVIDID-PFGSPAPFLD  138 (380)
T ss_pred             ccEEecC-CCCCCchHHH
Confidence            7777554 5666666665

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=93.85  E-value=0.23  Score=44.62  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhcCCCC-CEEEEEcCcccH--HHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCC--eEEEEccccc
Q 023240          127 SEINDQLAAAAAVQEG-DIVLEIGPGTGS--LTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK  198 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~-~~VLDiGcG~G~--~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~--v~~~~gD~~~  198 (285)
                      +..+.+.++.+.-..| ...||||||.-.  .+-.+|+.   .++|+=+|.++-.++.++..+..+++  ..++.+|+.+
T Consensus        53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~  132 (267)
T PF04672_consen   53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD  132 (267)
T ss_dssp             HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred             HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence            4445566666655434 579999999764  34455554   68999999999999999999887766  8999999987


Q ss_pred             cc
Q 023240          199 CH  200 (285)
Q Consensus       199 ~~  200 (285)
                      ..
T Consensus       133 p~  134 (267)
T PF04672_consen  133 PE  134 (267)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.75  E-value=0.18  Score=48.58  Aligned_cols=79  Identities=13%  Similarity=0.263  Sum_probs=66.7

Q ss_pred             EEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHh-hcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEE
Q 023240          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~-~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~V  221 (285)
                      ++|-+|||.-.++..+-+.|. .|+.+|+|+-.++...... ...+-.++...|+....+++..||++   .+.+..|..
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiV---IdkGtlDal  127 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIV---IDKGTLDAL  127 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEE---EecCccccc
Confidence            899999999999988887764 7999999999999887765 34468899999999999998888887   567778888


Q ss_pred             EEcC
Q 023240          222 VANI  225 (285)
Q Consensus       222 v~n~  225 (285)
                      +...
T Consensus       128 ~~de  131 (482)
T KOG2352|consen  128 FEDE  131 (482)
T ss_pred             cCCc
Confidence            7763

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=93.66  E-value=0.49  Score=41.17  Aligned_cols=96  Identities=17%  Similarity=0.217  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+|.+||++|.|.|.....+.++. .+-+-||.++..++..+..--. ..||.++.|-..+.-..          ...+.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~----------L~d~~  169 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT----------LPDKH  169 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc----------ccccC
Confidence            468899999999999998888773 4566799999999998877432 24899999877665211          34566


Q ss_pred             ceEEEEcC--CCC-Cc---HHHHHHhccCCCcee
Q 023240          218 FAKVVANI--PFN-IS---TDVIKQLLPMGDIFS  245 (285)
Q Consensus       218 ~D~Vv~n~--P~~-~~---~~i~~~l~~~g~~~~  245 (285)
                      ||.|+-+-  |+. ..   .+.+-+|+.+++.++
T Consensus       170 FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S  203 (271)
T KOG1709|consen  170 FDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS  203 (271)
T ss_pred             cceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence            99998762  322 11   123346666666664

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.94  E-value=0.2  Score=46.95  Aligned_cols=96  Identities=14%  Similarity=0.212  Sum_probs=70.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      ++......=...+.+.+.+|.+|+|+.|..|.-|.++|..   ..+++|.|.++...+..++.+...+  .++..++|+.
T Consensus       195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~  274 (413)
T KOG2360|consen  195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFL  274 (413)
T ss_pred             eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcccccccccc
Confidence            4444444445566777888999999999999999998874   5799999999999999988877554  7788899998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ..+.++          .-...-.++.+|+-+
T Consensus       275 ~t~~~~----------~~~~v~~iL~DpscS  295 (413)
T KOG2360|consen  275 NTATPE----------KFRDVTYILVDPSCS  295 (413)
T ss_pred             CCCCcc----------cccceeEEEeCCCCC
Confidence            863221          123345677776643

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=92.90  E-value=0.35  Score=44.78  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=47.4

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccc
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~  199 (285)
                      ...+|+|.|+|..+..+...-.+|-+++.+.+.+-.++.++.  +.|+.+.||+.+-
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~  233 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD  233 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc
Confidence            689999999999999998865679999999999988888875  4588899997664

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.81  E-value=0.64  Score=43.38  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=37.1

Q ss_pred             CCEEEEEcCcccHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHhhc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~----------~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      +-.++|||+|.|.++.-+++.          ..++.-||.|++..+.=+++++.
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            457999999999998877652          45899999999999988888864

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=92.68  E-value=0.69  Score=41.59  Aligned_cols=62  Identities=23%  Similarity=0.244  Sum_probs=52.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI  186 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~  186 (285)
                      .-+.++..+++.. -..++..|||.-+|+|....+....+...+|+|++++.++.+.+++...
T Consensus       206 ~~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         206 QKPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            3445666777776 5557899999999999999998888999999999999999999998753

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=92.66  E-value=0.53  Score=41.76  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             CCEEEEEcCcccHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHhhc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~----------~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      +-+|+|+|+|+|.++.-+++.          ..+++-||.|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            468999999999999888763          24899999999999998888765

; PDB: 4F3N_A 1ZKD_B.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.47  E-value=0.27  Score=44.25  Aligned_cols=106  Identities=11%  Similarity=0.179  Sum_probs=72.8

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--  187 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--  187 (285)
                      .+...+.|.|.+++-.+.++.-...-  -.|+.|+=+| ----.+++++-.  ..+|..||+++..+....+-.+..+  
T Consensus       123 ~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~  201 (354)
T COG1568         123 EPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN  201 (354)
T ss_pred             CcchhcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc
Confidence            45556777788887766554433221  2467899998 333344444433  4689999999999999888877654  


Q ss_pred             CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      |++.+.-|..+.-..          .-...||+.+.+||+.+.
T Consensus       202 ~ie~~~~Dlr~plpe----------~~~~kFDvfiTDPpeTi~  234 (354)
T COG1568         202 NIEAFVFDLRNPLPE----------DLKRKFDVFITDPPETIK  234 (354)
T ss_pred             chhheeehhcccChH----------HHHhhCCeeecCchhhHH
Confidence            799999998774322          123679999999998754

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=92.20  E-value=0.49  Score=44.74  Aligned_cols=83  Identities=14%  Similarity=0.130  Sum_probs=60.1

Q ss_pred             CCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccchhhhhhHHhhhcC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +-+|||.=+|+|.=++..+.. +  .+|++-|+|+++++..++|++.++    .+++.+.|+..+-.           ..
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-----------~~  118 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-----------SR  118 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-----------HS
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-----------hc
Confidence            458999999999999888876 2  589999999999999999988763    47888999987632           24


Q ss_pred             CCCceEEEEcCCCCCcHHHHHH
Q 023240          215 SSGFAKVVANIPFNISTDVIKQ  236 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~~~~~i~~~  236 (285)
                      ...||+|=.+ ||.-+.+++..
T Consensus       119 ~~~fD~IDlD-PfGSp~pflds  139 (377)
T PF02005_consen  119 QERFDVIDLD-PFGSPAPFLDS  139 (377)
T ss_dssp             TT-EEEEEE---SS--HHHHHH
T ss_pred             cccCCEEEeC-CCCCccHhHHH
Confidence            5778988775 57777777763

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=92.16  E-value=0.65  Score=41.15  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             EEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       146 LDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      |...||+-.++..+.+..-++.+.|+.+.=....++++....++++..+|.....-+..        +++..--.|+.+|
T Consensus        93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~L--------PP~erRglVLIDP  164 (279)
T COG2961          93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHL--------PPKERRGLVLIDP  164 (279)
T ss_pred             cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhC--------CCCCcceEEEeCC
Confidence            99999999999999988889999999999999999999866699999999865432110        3344457899999


Q ss_pred             CCCCcH
Q 023240          226 PFNIST  231 (285)
Q Consensus       226 P~~~~~  231 (285)
                      ||....
T Consensus       165 PfE~~~  170 (279)
T COG2961         165 PFELKD  170 (279)
T ss_pred             Cccccc
Confidence            998765

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.01  E-value=0.14  Score=39.49  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=27.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD  172 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~  172 (285)
                      +...-.|||||.|-+.-.|...|..=.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            35579999999999999999989998999954

; GO: 0008168 methyltransferase activity

>PRK05867 short chain dehydrogenase; Provisional

Probab=91.82  E-value=1.5  Score=38.24  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+++..+.....+... +++..+.+|+.+..-....++-+.  ...+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVT--AELG   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            46789999975443   33445556899999999988877776665543 367788889877543222222221  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|..
T Consensus        86 ~id~lv~~ag   95 (253)
T PRK05867         86 GIDIAVCNAG   95 (253)
T ss_pred             CCCEEEECCC
Confidence            6899998753

>PRK08339 short chain dehydrogenase; Provisional

Probab=91.69  E-value=1.5  Score=38.68  Aligned_cols=82  Identities=17%  Similarity=0.239  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...  .++.++.+|+.+..-....++.+   ...
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~---~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL---KNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH---Hhh
Confidence            46788888875443   44455666899999999988777766655432  36888999998764333223322   223


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        84 g~iD~lv~na   93 (263)
T PRK08339         84 GEPDIFFFST   93 (263)
T ss_pred             CCCcEEEECC
Confidence            5689988874

>PRK06172 short chain dehydrogenase; Provisional

Probab=91.52  E-value=1.6  Score=38.00  Aligned_cols=83  Identities=11%  Similarity=0.091  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++++||=.|++ |.++.    .+++.|.+|+.++.+++-++.+.+.+... +++.++.+|+.+..-....++.+.  ...
T Consensus         6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~   82 (253)
T PRK06172          6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTI--AAY   82 (253)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            46788888864 44443    34455889999999988776666555443 378899999987542222222221  123


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|.+|.|.-
T Consensus        83 g~id~li~~ag   93 (253)
T PRK06172         83 GRLDYAFNNAG   93 (253)
T ss_pred             CCCCEEEECCC
Confidence            56799998743

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.50  E-value=0.73  Score=35.23  Aligned_cols=64  Identities=23%  Similarity=0.293  Sum_probs=44.2

Q ss_pred             CcccHHHHHHHHh---C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          150 PGTGSLTNVLLNA---G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       150 cG~G~~t~~la~~---~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      ||.|.++..+++.   + .+|+.+|.+++.++.++..     .+.++.||+.+....       +. ..-...+.++...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l-------~~-a~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVL-------ER-AGIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHH-------HH-TTGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHH-------hh-cCccccCEEEEcc
Confidence            6777888777664   4 4899999999999888866     478999999886421       11 2334567777654


Q ss_pred             C
Q 023240          226 P  226 (285)
Q Consensus       226 P  226 (285)
                      +
T Consensus        71 ~   71 (116)
T PF02254_consen   71 D   71 (116)
T ss_dssp             S
T ss_pred             C
Confidence            4

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=91.49  E-value=0.57  Score=42.18  Aligned_cols=40  Identities=20%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             CCEEEEEcCcccH--HHHHH--HHh-------CCEEEEEeCCHHHHHHHHH
Q 023240          142 GDIVLEIGPGTGS--LTNVL--LNA-------GATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       142 ~~~VLDiGcG~G~--~t~~l--a~~-------~~~V~giD~~~~~v~~a~~  181 (285)
                      .-+|+-+||+||.  ++++|  .+.       ..+|+|.|+|..+++.|+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            5689999999997  44444  332       2489999999999999984

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=91.47  E-value=1.6  Score=38.24  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=50.8

Q ss_pred             EEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      ++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...+++.++..|+.+..-....++-+.  ...+..|+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~--~~~g~id~   79 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW--ELLGGIDA   79 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH--HhcCCCCE
Confidence            46666754332   33444556899999999988887777666544578888999877542222222221  22356899


Q ss_pred             EEEcC
Q 023240          221 VVANI  225 (285)
Q Consensus       221 Vv~n~  225 (285)
                      +|.|.
T Consensus        80 li~na   84 (259)
T PRK08340         80 LVWNA   84 (259)
T ss_pred             EEECC
Confidence            98874

>PRK12829 short chain dehydrogenase; Provisional

Probab=91.43  E-value=2  Score=37.42  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.++|=.|++ |.++..++    +.|.+|++++.+++..+...+..... ++.++.+|+.+..-....++.+.  ...+
T Consensus        10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~~   85 (264)
T PRK12829         10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAV--ERFG   85 (264)
T ss_pred             CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            67899988865 55555544    34889999999987766655444322 56888999887543222222221  1224


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      .+|.||.+..
T Consensus        86 ~~d~vi~~ag   95 (264)
T PRK12829         86 GLDVLVNNAG   95 (264)
T ss_pred             CCCEEEECCC
Confidence            6899988643

>PRK07063 short chain dehydrogenase; Provisional

Probab=91.28  E-value=1.8  Score=37.77  Aligned_cols=83  Identities=16%  Similarity=0.215  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+...+.+..   ..++.++..|+.+..-....++-+.  ..
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~   83 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE--EA   83 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH--HH
Confidence            46788988865432   3344555689999999998888777666653   2368888999877543222222221  22


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|.+|.|.
T Consensus        84 ~g~id~li~~a   94 (260)
T PRK07063         84 FGPLDVLVNNA   94 (260)
T ss_pred             hCCCcEEEECC
Confidence            35689999874

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=91.26  E-value=0.17  Score=45.61  Aligned_cols=56  Identities=20%  Similarity=0.296  Sum_probs=43.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (285)
                      .+..++|+|||.|-++..-  -.+.++|.|++...+..++..    +...+..+|++++|+.
T Consensus        45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~  100 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFR  100 (293)
T ss_pred             CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC----CCceeehhhhhcCCCC
Confidence            3778999999999877431  245799999999888888754    2237899999999854

>PRK09072 short chain dehydrogenase; Provisional

Probab=91.19  E-value=1.9  Score=37.81  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=.|++.|.   ++..+++.|.+|++++.+++..+.+...+...+++.++..|+.+..-....++.+.   ..+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAR---EMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH---hcCC
Confidence            35678888865432   34445556899999999988777666555333478899999887543333333332   2356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|.+|.+..
T Consensus        81 id~lv~~ag   89 (263)
T PRK09072         81 INVLINNAG   89 (263)
T ss_pred             CCEEEECCC
Confidence            799988743

>PRK07326 short chain dehydrogenase; Provisional

Probab=91.10  E-value=1.9  Score=37.02  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+.+||=.| |+|.++..+++    .|.+|++++.++.....+.+.+.....+.++.+|+.+.......++-+.  ...+
T Consensus         5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   81 (237)
T PRK07326          5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIV--AAFG   81 (237)
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            357899888 46666655544    4789999999987776665555433568889999876432111111111  1224


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      .+|.||.+.
T Consensus        82 ~~d~vi~~a   90 (237)
T PRK07326         82 GLDVLIANA   90 (237)
T ss_pred             CCCEEEECC
Confidence            678888763

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=91.06  E-value=1.8  Score=40.58  Aligned_cols=48  Identities=29%  Similarity=0.403  Sum_probs=39.7

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      ....+.++.+||.+|||. |..+..+|+. +. +|++++.+++..+.+++.
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            344566788999999988 8888888887 65 699999999999998875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK06949 short chain dehydrogenase; Provisional

Probab=90.92  E-value=2.1  Score=37.17  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.| |+|.++..+++    .|.+|++++.+++.++.+...+... .++.++.+|+.+..-.....+.+.  ...
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   84 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAE--TEA   84 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--Hhc
Confidence            467888888 55555555543    4789999999988877766655432 478889999876432211111111  223


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|..
T Consensus        85 ~~~d~li~~ag   95 (258)
T PRK06949         85 GTIDILVNNSG   95 (258)
T ss_pred             CCCCEEEECCC
Confidence            56799888743

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.88  E-value=2.3  Score=39.25  Aligned_cols=51  Identities=27%  Similarity=0.433  Sum_probs=42.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHH
Q 023240          131 DQLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~  181 (285)
                      -........+.+.+||=+|+| +|-++...|+. | .+|+.+|.++..++.|++
T Consensus       159 ~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  159 VHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             hhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            345556667789999999999 57777777776 5 589999999999999998

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.88  E-value=0.34  Score=45.61  Aligned_cols=112  Identities=13%  Similarity=0.213  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhh----------c-CCCeEE
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA----------S-IDQLKV  191 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~----------~-~~~v~~  191 (285)
                      +.++-+..+++.+++++++.-.|+|+|.|......+.. + ..=+|+|+....-+.|..+.+          . .+.++.
T Consensus       176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~  255 (419)
T KOG3924|consen  176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET  255 (419)
T ss_pred             hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence            34566788899999999999999999999998887765 3 366788876554444433322          1 136889


Q ss_pred             EEcccccccchhhhhhHHhhhcCCCCceEEEEc-CCCCC-----cHHHHHHhccCCCcee
Q 023240          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNI-----STDVIKQLLPMGDIFS  245 (285)
Q Consensus       192 ~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n-~P~~~-----~~~i~~~l~~~g~~~~  245 (285)
                      +++++.......         ......++|++| .-|..     ...++.++..+.++++
T Consensus       256 i~gsf~~~~~v~---------eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS  306 (419)
T KOG3924|consen  256 IHGSFLDPKRVT---------EIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIIS  306 (419)
T ss_pred             cccccCCHHHHH---------HHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEec
Confidence            999998764322         123456777776 33321     1255556655555543

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=90.75  E-value=2.3  Score=37.05  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|+ +|.++..+++    .|.+|+.++.+++..+.+...++.. .++.++.+|+.+.......++-+.  ...
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   85 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI   85 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence            4678998884 5665555544    5889999999988777666666543 257888889877543222222221  233


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|.+|.|..
T Consensus        86 ~~~d~li~~ag   96 (255)
T PRK07523         86 GPIDILVNNAG   96 (255)
T ss_pred             CCCCEEEECCC
Confidence            56799988753

>PLN02253 xanthoxin dehydrogenase

Probab=90.53  E-value=2.3  Score=37.70  Aligned_cols=82  Identities=13%  Similarity=0.135  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|+ +|.++..+    ++.|.+|+.++.+++..+.....+....++.++.+|+.+..-....++.+.  ...+
T Consensus        17 ~~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~~g   93 (280)
T PLN02253         17 LGKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV--DKFG   93 (280)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHH--HHhC
Confidence            3668888884 45555444    445889999999887766655555433468899999987643333333222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|.+|.|.
T Consensus        94 ~id~li~~A  102 (280)
T PLN02253         94 TLDIMVNNA  102 (280)
T ss_pred             CCCEEEECC
Confidence            689998874

>PRK06139 short chain dehydrogenase; Provisional

Probab=90.45  E-value=2.2  Score=39.42  Aligned_cols=84  Identities=15%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++...+.+...+ ++.++..|+.+..-.....+.+.  ...+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA--SFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HhcC
Confidence            45788888864333   334455568999999999988877766665433 67788888876543222222222  1236


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        84 ~iD~lVnnAG   93 (330)
T PRK06139         84 RIDVWVNNVG   93 (330)
T ss_pred             CCCEEEECCC
Confidence            6899998843

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=90.39  E-value=2.7  Score=36.59  Aligned_cols=83  Identities=17%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|+ +|.++..    +++.|++|+.++.+++.++.+...++.. .++.++.+|+.+..-....++-+.  ...
T Consensus        10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   86 (256)
T PRK06124         10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARID--AEH   86 (256)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence            4778888885 4444444    4445899999999987766655555433 368889999877532222222211  223


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|.+|.|.-
T Consensus        87 ~~id~vi~~ag   97 (256)
T PRK06124         87 GRLDILVNNVG   97 (256)
T ss_pred             CCCCEEEECCC
Confidence            56799998744

>PRK07677 short chain dehydrogenase; Provisional

Probab=90.32  E-value=2.4  Score=36.94  Aligned_cols=81  Identities=14%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             CEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       143 ~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +++|=.|++.|.   ++..+++.|.+|+.++.++...+.+...+... +++.++.+|..+.......++.+.  ...+..
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~i   79 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQID--EKFGRI   79 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHhCCc
Confidence            567777775442   33344556889999999987776666555433 478889999876443222222221  123567


Q ss_pred             eEEEEcC
Q 023240          219 AKVVANI  225 (285)
Q Consensus       219 D~Vv~n~  225 (285)
                      |.+|.|.
T Consensus        80 d~lI~~a   86 (252)
T PRK07677         80 DALINNA   86 (252)
T ss_pred             cEEEECC
Confidence            9988874

>PRK07454 short chain dehydrogenase; Provisional

Probab=90.28  E-value=3.4  Score=35.56  Aligned_cols=83  Identities=10%  Similarity=0.049  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +.+++|=.|+ +|.++..++    +.|.+|+.++.+++-.+...+..+.. .++.++.+|+.+.......++.+.  ...
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   81 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELL--EQF   81 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            4567888884 555555444    45889999999987666655554432 378889999987643222222221  123


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|.+|.|.-
T Consensus        82 ~~id~lv~~ag   92 (241)
T PRK07454         82 GCPDVLINNAG   92 (241)
T ss_pred             CCCCEEEECCC
Confidence            45799988753

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.20  E-value=2.6  Score=36.87  Aligned_cols=81  Identities=10%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             CEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          143 DIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +++|=.|++ |.++.    .+++.|.+|+.++.+++.++.+..... ..++.++.+|+.+..-....++-+.. ...+..
T Consensus         2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~-~~~~~i   78 (260)
T PRK08267          2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAA-ATGGRL   78 (260)
T ss_pred             cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH-HcCCCC
Confidence            357777754 44444    445558899999999888777666543 24788999999775422222211111 114568


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |.||.|.-
T Consensus        79 d~vi~~ag   86 (260)
T PRK08267         79 DVLFNNAG   86 (260)
T ss_pred             CEEEECCC
Confidence            99998753

>PRK07890 short chain dehydrogenase; Provisional

Probab=90.18  E-value=2.6  Score=36.66  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++++||=.|+ +|.++.    .+++.|.+|+.++.+++..+.+...+... .++.++..|+.+.......++.+.  ..-
T Consensus         4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   80 (258)
T PRK07890          4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALAL--ERF   80 (258)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHH--HHc
Confidence            4568887775 444444    44556899999999988776666555432 368889999876543222222221  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|.+|.|.
T Consensus        81 g~~d~vi~~a   90 (258)
T PRK07890         81 GRVDALVNNA   90 (258)
T ss_pred             CCccEEEECC
Confidence            5679998874

>PRK07024 short chain dehydrogenase; Provisional

Probab=90.17  E-value=2.4  Score=37.02  Aligned_cols=80  Identities=15%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             CEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ++||=.|+ +|.++..    +++.|.+|+.++.+++.++...+.+...+++.++.+|+.+..-....++.+.  ...+..
T Consensus         3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~g~i   79 (257)
T PRK07024          3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFI--AAHGLP   79 (257)
T ss_pred             CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH--HhCCCC
Confidence            46777775 4444444    4455889999999988777665554432378889999987542222222221  223557


Q ss_pred             eEEEEcC
Q 023240          219 AKVVANI  225 (285)
Q Consensus       219 D~Vv~n~  225 (285)
                      |++|.|.
T Consensus        80 d~lv~~a   86 (257)
T PRK07024         80 DVVIANA   86 (257)
T ss_pred             CEEEECC
Confidence            9999873

>PRK06194 hypothetical protein; Provisional

Probab=90.04  E-value=2.7  Score=37.30  Aligned_cols=83  Identities=7%  Similarity=0.085  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|. +|.++..+    ++.|.+|+.+|.+.+..+.....+... .++.++.+|+.+.......++.+.  ...
T Consensus         5 ~~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~   81 (287)
T PRK06194          5 AGKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAAL--ERF   81 (287)
T ss_pred             CCCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            3567887774 45444444    445889999999987766665554432 367889999887542222222221  123


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|+||.|.-
T Consensus        82 g~id~vi~~Ag   92 (287)
T PRK06194         82 GAVHLLFNNAG   92 (287)
T ss_pred             CCCCEEEECCC
Confidence            56799998754

>PRK07478 short chain dehydrogenase; Provisional

Probab=89.95  E-value=3.1  Score=36.20  Aligned_cols=84  Identities=14%  Similarity=0.200  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+++..+.+...+... +++.++.+|+.+..-....++-+.  ...+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   82 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAV--ERFG   82 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence            35678877765432   33445556899999999988777766665543 368888899877543222222221  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.|..
T Consensus        83 ~id~li~~ag   92 (254)
T PRK07478         83 GLDIAFNNAG   92 (254)
T ss_pred             CCCEEEECCC
Confidence            6899998753

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=89.87  E-value=0.77  Score=40.77  Aligned_cols=79  Identities=16%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             EEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       146 LDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      |...+|+-.++..+.+..-+.+..|+.+.-.+..++++....++++++.|..+.-.+     ++   ++...--+|+.+|
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~a-----ll---PP~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKA-----LL---PPPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHH-----H----S-TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhh-----hC---CCCCCCeEEEECC
Confidence            889999999999998888899999999999999999988766999999998774211     11   3344457899999


Q ss_pred             CCCCcHH
Q 023240          226 PFNISTD  232 (285)
Q Consensus       226 P~~~~~~  232 (285)
                      ||....+
T Consensus       134 pYE~~~d  140 (245)
T PF04378_consen  134 PYEQKDD  140 (245)
T ss_dssp             ---STTH
T ss_pred             CCCCchH
Confidence            9987764

; PDB: 2OO3_A.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.80  E-value=2.9  Score=36.04  Aligned_cols=83  Identities=12%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++ |.++.    .+++.|.+|++++.++.-.+.+...+....++.++.+|+.+..-....++-+.  ...+
T Consensus         4 ~~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   80 (251)
T PRK07231          4 EGKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAAL--ERFG   80 (251)
T ss_pred             CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence            35678888754 34443    44555889999999987776666555432368889999887643322222111  2235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      .+|.||.+..
T Consensus        81 ~~d~vi~~ag   90 (251)
T PRK07231         81 SVDILVNNAG   90 (251)
T ss_pred             CCCEEEECCC
Confidence            6899998754

>PRK05876 short chain dehydrogenase; Provisional

Probab=89.75  E-value=3  Score=37.20  Aligned_cols=84  Identities=13%  Similarity=0.061  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+++.++.+.+.+...+ ++.++..|+.+..-....++-+.  ...+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAF--RLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--HHcC
Confidence            46778877765433   333444558899999999887776665554333 67888889877542222222221  2235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        83 ~id~li~nAg   92 (275)
T PRK05876         83 HVDVVFSNAG   92 (275)
T ss_pred             CCCEEEECCC
Confidence            6799998754

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=89.52  E-value=1.3  Score=39.35  Aligned_cols=32  Identities=31%  Similarity=0.317  Sum_probs=25.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKD  172 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~  172 (285)
                      .+.+|||+|+|+|-.++.+|.. +++|.--|.-
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~  118 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLP  118 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCch
Confidence            3568999999999888888875 6777776654

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=89.51  E-value=3  Score=34.66  Aligned_cols=94  Identities=15%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             ccCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccc
Q 023240          123 YMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~-~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~  199 (285)
                      |+-+++.++.+++.+.-  .++.+|+=|||=+-+..+.-.. .+.+++-.|+|.......       ++ .++.-|..+.
T Consensus         5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~~~p   76 (162)
T PF10237_consen    5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDYNEP   76 (162)
T ss_pred             cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCCCCh
Confidence            55666777777666654  3467899999888777665411 256899999996554321       13 4555555432


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHH
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i  233 (285)
                      .      ++.+  .-.+.+|+||.+||| ...+.
T Consensus        77 ~------~~~~--~l~~~~d~vv~DPPF-l~~ec  101 (162)
T PF10237_consen   77 E------ELPE--ELKGKFDVVVIDPPF-LSEEC  101 (162)
T ss_pred             h------hhhh--hcCCCceEEEECCCC-CCHHH
Confidence            1      1111  124689999999999 44433

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK05854 short chain dehydrogenase; Provisional

Probab=89.50  E-value=3.4  Score=37.64  Aligned_cols=83  Identities=14%  Similarity=0.147  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++++=.|++.|.   ++..+++.|++|+.+..+++..+.+.+.+...   .++.++..|+.+..-....++.+.  ..
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~--~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR--AE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH--Hh
Confidence            46788888865443   34445556899999999987766665554322   268889999887653333333332  23


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|++|.|.
T Consensus        91 ~~~iD~li~nA  101 (313)
T PRK05854         91 GRPIHLLINNA  101 (313)
T ss_pred             CCCccEEEECC
Confidence            45689999874

>PRK05866 short chain dehydrogenase; Provisional

Probab=89.50  E-value=3.2  Score=37.39  Aligned_cols=82  Identities=18%  Similarity=0.325  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++. .++..    +++.|.+|+.++.+++.++.+.+.+... +.+.++.+|+.+.......++.+.  ...
T Consensus        39 ~~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~  115 (293)
T PRK05866         39 TGKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVE--KRI  115 (293)
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            356888888643 44433    4455889999999988777666555432 367788899887543222222221  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus       116 g~id~li~~A  125 (293)
T PRK05866        116 GGVDILINNA  125 (293)
T ss_pred             CCCCEEEECC
Confidence            5679999874

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.43  E-value=2  Score=40.74  Aligned_cols=95  Identities=20%  Similarity=0.338  Sum_probs=66.6

Q ss_pred             CEEEEEcCcc-cHHHHH-HHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          143 DIVLEIGPGT-GSLTNV-LLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       143 ~~VLDiGcG~-G~~t~~-la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .+||=||||. |..... ||+.+ .+|+..|.+.+.++.+.....  ++++.+.-|+.+.+-   ...++      ..+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~a---l~~li------~~~d   70 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDA---LVALI------KDFD   70 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHH---HHHHH------hcCC
Confidence            4689999952 333332 24445 799999999999888877653  378899999988742   12222      3359


Q ss_pred             EEEEcCCCCCcHHHHHHhccCCCceeeeE
Q 023240          220 KVVANIPFNISTDVIKQLLPMGDIFSEVV  248 (285)
Q Consensus       220 ~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~  248 (285)
                      +||.-.|+.....+++...+.|-....+.
T Consensus        71 ~VIn~~p~~~~~~i~ka~i~~gv~yvDts   99 (389)
T COG1748          71 LVINAAPPFVDLTILKACIKTGVDYVDTS   99 (389)
T ss_pred             EEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence            99998888888888888877776664443

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.42  E-value=1.9  Score=33.71  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=49.5

Q ss_pred             CCEEEEEcCcccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          142 GDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       142 ~~~VLDiGcG~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      ..+|.|+|-|-=. .+..|++.|..|+++|+++.       +..  ..++++..|+.+-...           --...|+
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~--~g~~~v~DDitnP~~~-----------iY~~A~l   73 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP--EGLRFVVDDITNPNIS-----------IYEGADL   73 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc--ccceEEEccCCCccHH-----------HhhCccc
Confidence            3489999876543 45677778999999999976       221  3688999999885532           1133577


Q ss_pred             EEEc-CCCCCcHHHHH
Q 023240          221 VVAN-IPFNISTDVIK  235 (285)
Q Consensus       221 Vv~n-~P~~~~~~i~~  235 (285)
                      |.+= ||-...+.+++
T Consensus        74 IYSiRpppEl~~~ild   89 (129)
T COG1255          74 IYSIRPPPELQSAILD   89 (129)
T ss_pred             eeecCCCHHHHHHHHH
Confidence            8774 55444444443

>PRK07109 short chain dehydrogenase; Provisional

Probab=89.40  E-value=3.2  Score=38.27  Aligned_cols=84  Identities=12%  Similarity=0.148  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++...+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~--~~~g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAE--EELG   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HHCC
Confidence            45678888854333   23344556899999999988877766665543 378888999877543222222222  2235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        85 ~iD~lInnAg   94 (334)
T PRK07109         85 PIDTWVNNAM   94 (334)
T ss_pred             CCCEEEECCC
Confidence            6899998754

>PRK08862 short chain dehydrogenase; Provisional

Probab=89.38  E-value=3.3  Score=35.82  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++.+|=.|++.|.   ++..+++.|.+|+.++.+++.++.+.+.+...+ ++..+..|..+..-....++-+.  ..-+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   81 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIE--QQFN   81 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            46788888888766   455666679999999999988877766654433 56667777765432222222221  1224


Q ss_pred             -CceEEEEcC
Q 023240          217 -GFAKVVANI  225 (285)
Q Consensus       217 -~~D~Vv~n~  225 (285)
                       ..|++|.|.
T Consensus        82 ~~iD~li~na   91 (227)
T PRK08862         82 RAPDVLVNNW   91 (227)
T ss_pred             CCCCEEEECC
Confidence             689999885

>PRK07904 short chain dehydrogenase; Provisional

Probab=89.33  E-value=2.9  Score=36.73  Aligned_cols=82  Identities=9%  Similarity=0.118  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhC-CEEEEEeCCHHH-HHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhh
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAG-ATVLAIEKDQHM-VGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~-~~V~giD~~~~~-v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+++||=.|++ |.++..+    ++.+ .+|+.++.+++- ++.+.+.+...+  +++++.+|+.+..-.   .++++..
T Consensus         7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~---~~~~~~~   82 (253)
T PRK07904          7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSH---PKVIDAA   82 (253)
T ss_pred             CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHH---HHHHHHH
Confidence            56789999974 4444444    4444 799999998764 555544444332  688999998774422   2222221


Q ss_pred             cCCCCceEEEEcCC
Q 023240          213 KSSSGFAKVVANIP  226 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P  226 (285)
                      ...+..|++|.|..
T Consensus        83 ~~~g~id~li~~ag   96 (253)
T PRK07904         83 FAGGDVDVAIVAFG   96 (253)
T ss_pred             HhcCCCCEEEEeee
Confidence            22357898887643

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.31  E-value=2.7  Score=36.99  Aligned_cols=83  Identities=12%  Similarity=0.060  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCcc----cH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~----G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++.+|=.|+++    |. ++..+++.|++|+.++.+++..+.+++..+..+.+.++..|+.+..-....++.+.+  ..
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~   86 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAE--EW   86 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHH--Hc
Confidence            467899999754    33 344455568999999988654333333222223456778888776543334444322  23


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        87 g~ld~lv~nA   96 (258)
T PRK07533         87 GRLDFLLHSI   96 (258)
T ss_pred             CCCCEEEEcC
Confidence            5789999884

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=89.28  E-value=3.5  Score=35.96  Aligned_cols=83  Identities=14%  Similarity=0.113  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.| |+|.++..+++    .|.+|+.++.+.+-.+.+...+... .++.++.+|+.+..-....++-+.  ...
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~--~~~   87 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETL--ERF   87 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            467899888 55666665554    4889999999988777666655433 367889999987543222222221  122


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|.||.+..
T Consensus        88 ~~id~vi~~ag   98 (259)
T PRK08213         88 GHVDILVNNAG   98 (259)
T ss_pred             CCCCEEEECCC
Confidence            46799988754

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=89.25  E-value=3.3  Score=36.25  Aligned_cols=82  Identities=23%  Similarity=0.364  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.....  .++.++.+|+.+.......++-+.  ...+.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~   80 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTV--DAFGK   80 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HhcCC
Confidence            46788888864333   333455568999999999887766655432  367888999877543332222221  23356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|..
T Consensus        81 id~li~~ag   89 (263)
T PRK06200         81 LDCFVGNAG   89 (263)
T ss_pred             CCEEEECCC
Confidence            899988754

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.24  E-value=3.7  Score=35.35  Aligned_cols=83  Identities=8%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|+ +|.++..+    ++.|.+|+.++.+++.++.+...+... .++.++..|+.+........+-+.  ...
T Consensus         4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   80 (253)
T PRK08217          4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIA--EDF   80 (253)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            4678898885 34444444    445889999999987776666555433 367888999876532222122111  122


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|.||.|..
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            56799998754

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=89.23  E-value=3.4  Score=36.29  Aligned_cols=84  Identities=21%  Similarity=0.228  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+...+...+ ++.++.+|+.+..-....++.+.  ...+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE--KEVG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence            46788888876543   344556668999999999887777666665433 68889999877643332333222  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.|..
T Consensus        87 ~id~li~~ag   96 (265)
T PRK07097         87 VIDILVNNAG   96 (265)
T ss_pred             CCCEEEECCC
Confidence            6899998754

>PRK06138 short chain dehydrogenase; Provisional

Probab=89.18  E-value=3.7  Score=35.45  Aligned_cols=83  Identities=16%  Similarity=0.221  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|+. |.++..    +++.|++|+.++.+.+.............++.++.+|+.+.......++.+.  ...+
T Consensus         4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~   80 (252)
T PRK06138          4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVA--ARWG   80 (252)
T ss_pred             CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            35688888874 444444    4445889999999987766655555422468889999887543222222221  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.||.+..
T Consensus        81 ~id~vi~~ag   90 (252)
T PRK06138         81 RLDVLVNNAG   90 (252)
T ss_pred             CCCEEEECCC
Confidence            6899988744

>PRK05872 short chain dehydrogenase; Provisional

Probab=89.14  E-value=3.3  Score=37.24  Aligned_cols=84  Identities=18%  Similarity=0.227  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+++.++...+.+.....+..+..|+.+..-.....+-+.  ...+.
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~   85 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAV--ERFGG   85 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46788988854432   33344556899999999988777666555432345556688776532222222111  22356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus        86 id~vI~nAG   94 (296)
T PRK05872         86 IDVVVANAG   94 (296)
T ss_pred             CCEEEECCC
Confidence            899998854

>PRK08226 short chain dehydrogenase; Provisional

Probab=89.11  E-value=3.7  Score=35.88  Aligned_cols=83  Identities=12%  Similarity=0.113  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|+. |.++..++    +.|.+|+.++.++...+.+++......++.++.+|+.+..-....++.+.  ...+
T Consensus         5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~   81 (263)
T PRK08226          5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAK--EKEG   81 (263)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            45788888864 55555444    45889999999876444443332222467888999877543333333322  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.|.-
T Consensus        82 ~id~vi~~ag   91 (263)
T PRK08226         82 RIDILVNNAG   91 (263)
T ss_pred             CCCEEEECCC
Confidence            6788888643

>PRK07035 short chain dehydrogenase; Provisional

Probab=88.86  E-value=3.7  Score=35.63  Aligned_cols=84  Identities=15%  Similarity=0.239  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++||=.|++.|.   ++..+++.|.+|+.++.++...+...+.+... .++.++..|..+..-....++.+.  ...+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   84 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIR--ERHG   84 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            35678888866553   33445556889999999987777666655433 357778888876542222222211  1234


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.+..
T Consensus        85 ~id~li~~ag   94 (252)
T PRK07035         85 RLDILVNNAA   94 (252)
T ss_pred             CCCEEEECCC
Confidence            6799887653

>PRK08643 acetoin reductase; Validated

Probab=88.86  E-value=3.7  Score=35.68  Aligned_cols=81  Identities=11%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             CCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++|=.|+. |.++..+    ++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         2 ~k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   78 (256)
T PRK08643          2 SKVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVV--DTFG   78 (256)
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            3467767744 4444444    445889999999988777666655433 367888999887653333333322  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|.+|.|.
T Consensus        79 ~id~vi~~a   87 (256)
T PRK08643         79 DLNVVVNNA   87 (256)
T ss_pred             CCCEEEECC
Confidence            689998875

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.81  E-value=3.9  Score=34.99  Aligned_cols=83  Identities=13%  Similarity=0.208  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++||=.|++ |.++..++    +.|.+|++++.+++..+.+.+.....+++.++.+|+.+..-....++-+.  ...+
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAA--KVLN   80 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence            36789999975 44444443    45889999999988777665555444578889999887542222111111  1124


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.++.+..
T Consensus        81 ~id~ii~~ag   90 (238)
T PRK05786         81 AIDGLVVTVG   90 (238)
T ss_pred             CCCEEEEcCC
Confidence            5688877653

>PRK08589 short chain dehydrogenase; Validated

Probab=88.74  E-value=4.2  Score=36.00  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+ +..+...+.+... +++.++..|+.+..-....++.+.  ...+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIK--EQFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH--HHcC
Confidence            46688888865443   344455568999999999 4444444444332 368888999877543222222222  2335


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        82 ~id~li~~Ag   91 (272)
T PRK08589         82 RVDVLFNNAG   91 (272)
T ss_pred             CcCEEEECCC
Confidence            6899998753

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.70  E-value=3.2  Score=36.94  Aligned_cols=83  Identities=19%  Similarity=0.133  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++.+|=.|++    .|. ++..+++.|++|+.++.++...+.+++..+..+....+..|+.+..-....++.+.  ...
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~--~~~   83 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALE--KKW   83 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHH--HHh
Confidence            46788888875    444 45566667999999988764433333332222333467888877543333333322  233


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        84 g~iD~lVnnA   93 (271)
T PRK06505         84 GKLDFVVHAI   93 (271)
T ss_pred             CCCCEEEECC
Confidence            6789999874

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=88.69  E-value=4  Score=36.06  Aligned_cols=84  Identities=13%  Similarity=0.166  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++.|.   ++..+++.|.+|+.++.+++..+.+.+.+... .++.++.+|+.+..-....++.+.  ..-+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~g   86 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQIL--EDFG   86 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46778888865433   33344556889999999987776665555433 368888999877543222222221  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|..
T Consensus        87 ~id~li~~ag   96 (278)
T PRK08277         87 PCDILINGAG   96 (278)
T ss_pred             CCCEEEECCC
Confidence            6899998743

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=88.66  E-value=0.34  Score=45.58  Aligned_cols=68  Identities=18%  Similarity=0.247  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      .++..++|+|||.|.....++.. ++.++|++.++.-+..+.......   .+..++.+|+.+.++++..+|
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd  180 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFD  180 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccC
Confidence            35668999999999999999987 589999999988887776654432   245558899999887654443

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.59  E-value=3.9  Score=35.12  Aligned_cols=82  Identities=11%  Similarity=0.162  Sum_probs=51.3

Q ss_pred             CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +.++|=.|+ +|.++..+++    .|.+|+.++.++...+.....+...+ ++.++.+|+.+..-....++.+.  ...+
T Consensus         7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   83 (239)
T PRK07666          7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK--NELG   83 (239)
T ss_pred             CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            567888884 6676665544    48899999999876655544444333 68888999877542222222111  1234


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.||.+..
T Consensus        84 ~id~vi~~ag   93 (239)
T PRK07666         84 SIDILINNAG   93 (239)
T ss_pred             CccEEEEcCc
Confidence            6799988743

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=88.50  E-value=1.3  Score=35.84  Aligned_cols=53  Identities=13%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       165 ~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      +|+|.|+.+++++.++++++..   +++++++.+=.++.-.          .+.+.+|.++.|+-|
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~----------i~~~~v~~~iFNLGY   56 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY----------IPEGPVDAAIFNLGY   56 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------------S--EEEEEEEESB
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh----------CccCCcCEEEEECCc
Confidence            6999999999999999999876   3799998876665421          122579999999544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK07774 short chain dehydrogenase; Provisional

Probab=88.47  E-value=3.9  Score=35.26  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.| |+|.++..++    +.|.+|+.++.++...+.....+... +++.++..|..+..-....+..+.  ...
T Consensus         5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   81 (250)
T PRK07774          5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATV--SAF   81 (250)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            456788888 5556555554    45889999999987665555554332 367788889877543222222221  122


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|+||.|..
T Consensus        82 ~~id~vi~~ag   92 (250)
T PRK07774         82 GGIDYLVNNAA   92 (250)
T ss_pred             CCCCEEEECCC
Confidence            46899998754

>PRK08303 short chain dehydrogenase; Provisional

Probab=88.45  E-value=3.4  Score=37.63  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCH----------HHHHHHHHHhhcCC-CeEEEEcccccccchhhhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ----------HMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~----------~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~  206 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+.          +.++.+.+.++..+ ++.++..|+.+..-....+
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            46789999976553   3444555689999999873          33444444444333 5778889988754333333


Q ss_pred             hHHhhhcCCCCceEEEEcC
Q 023240          207 SLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~  225 (285)
                      +.+.  ...+..|++|.|.
T Consensus        87 ~~~~--~~~g~iDilVnnA  103 (305)
T PRK08303         87 ERID--REQGRLDILVNDI  103 (305)
T ss_pred             HHHH--HHcCCccEEEECC
Confidence            3322  2235689999886

>PRK09242 tropinone reductase; Provisional

Probab=88.41  E-value=3.9  Score=35.63  Aligned_cols=85  Identities=24%  Similarity=0.336  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCccc--H-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G--~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++.|  . ++..+++.|.+|+.++.+++..+.....+...   .++.++.+|+.+..-....++.+.  ..
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~   85 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE--DH   85 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH--HH
Confidence            4678888887443  2 33344555899999999988777666665432   367888999877542222222221  23


Q ss_pred             CCCceEEEEcCCC
Q 023240          215 SSGFAKVVANIPF  227 (285)
Q Consensus       215 ~~~~D~Vv~n~P~  227 (285)
                      .+..|.+|.+.-.
T Consensus        86 ~g~id~li~~ag~   98 (257)
T PRK09242         86 WDGLHILVNNAGG   98 (257)
T ss_pred             cCCCCEEEECCCC
Confidence            3568999887643

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=88.32  E-value=5.8  Score=34.46  Aligned_cols=72  Identities=14%  Similarity=0.195  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccH--HHHHHH--Hh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGS--LTNVLL--NA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~--~t~~la--~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      ++...+++-.+..-...+.++|+.|+.|.  .++.|+  .+  |++++.|-.+++.....++.+...+   -++|+.||.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            35566666666655567899999776543  344443  32  7899999999888777777776443   468888885


Q ss_pred             c
Q 023240          197 V  197 (285)
Q Consensus       197 ~  197 (285)
                      .
T Consensus       106 ~  106 (218)
T PF07279_consen  106 P  106 (218)
T ss_pred             H
Confidence            3

The function of this family is unknown.

>PRK07062 short chain dehydrogenase; Provisional

Probab=88.31  E-value=4  Score=35.75  Aligned_cols=84  Identities=21%  Similarity=0.280  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...   .++..+..|+.+..-.....+.+.  ..
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   84 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE--AR   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH--Hh
Confidence            46788989965443   33445556899999999988777665554332   257788888877543222222221  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|.+|.|.-
T Consensus        85 ~g~id~li~~Ag   96 (265)
T PRK07062         85 FGGVDMLVNNAG   96 (265)
T ss_pred             cCCCCEEEECCC
Confidence            356899988753

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=88.29  E-value=4.2  Score=35.16  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=52.1

Q ss_pred             CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++||=.| |+|.++..+++    .|.+|+.++.+++..+.+...++.. .++.++.+|+.+..-....++.+.  ...+
T Consensus         4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   80 (258)
T PRK12429          4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAV--ETFG   80 (258)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            46777666 45676666655    4889999999988776665555433 478889999876543222222222  1224


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|+||.|.
T Consensus        81 ~~d~vi~~a   89 (258)
T PRK12429         81 GVDILVNNA   89 (258)
T ss_pred             CCCEEEECC
Confidence            579988864

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=88.18  E-value=4.8  Score=35.03  Aligned_cols=82  Identities=13%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++.|.   ++..+++.|.+|+.++.++.. ..+...+.. ..++.++.+|+.+..-....++.+.  ...+
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAGGEALALTADLETYAGAQAAMAAAV--EAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHH--HHcC
Confidence            45688888864332   334445568899999998643 333333332 2367788889877532222222221  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|.+|.|.
T Consensus        84 ~id~lv~nA   92 (260)
T PRK12823         84 RIDVLINNV   92 (260)
T ss_pred             CCeEEEECC
Confidence            689999875

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=88.17  E-value=4.6  Score=34.72  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|+ +|.++..+    ++.|.+|++++.++.....+...+... .++.++.+|+.+..-....++-+.  ...
T Consensus         5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   81 (251)
T PRK12826          5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV--EDF   81 (251)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence            3568887775 56655554    445889999999977665555544433 368889999877532222222111  123


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +.+|.||.+..
T Consensus        82 ~~~d~vi~~ag   92 (251)
T PRK12826         82 GRLDILVANAG   92 (251)
T ss_pred             CCCCEEEECCC
Confidence            46799888754

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=87.97  E-value=5.6  Score=34.23  Aligned_cols=82  Identities=12%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++|=.|+ +|.++..++    +.|.+|+.++.+.+....+...+... .++.++.+|+.+.......++.+.  ...+
T Consensus         3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~   79 (250)
T TIGR03206         3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAE--QALG   79 (250)
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            567888885 455554444    45789999999987776666555433 378899999877543222222221  1234


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.+..
T Consensus        80 ~~d~vi~~ag   89 (250)
T TIGR03206        80 PVDVLVNNAG   89 (250)
T ss_pred             CCCEEEECCC
Confidence            5798888764

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07814 short chain dehydrogenase; Provisional

Probab=87.84  E-value=4.7  Score=35.40  Aligned_cols=82  Identities=17%  Similarity=0.253  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|+ +|.++..++    +.|.+|+.++.+++..+.+...+... .++.++..|..+.......++.+.  ...
T Consensus         9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   85 (263)
T PRK07814          9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAV--EAF   85 (263)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            4678888884 555555544    45889999999987766655554432 368888899877543222222221  122


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|.||.+.
T Consensus        86 ~~id~vi~~A   95 (263)
T PRK07814         86 GRLDIVVNNV   95 (263)
T ss_pred             CCCCEEEECC
Confidence            5689998864

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=87.72  E-value=4.9  Score=34.89  Aligned_cols=82  Identities=13%  Similarity=0.150  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|+ +|.++..+    ++.|.+|+.++.+++..+.+.+.+...+ ++.++.+|+.+..-....++-+.  ...
T Consensus         6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   82 (262)
T PRK13394          6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA--ERF   82 (262)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            3567886665 45555444    4458899999999977766666654433 67888999887653222222221  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|.||.+.
T Consensus        83 ~~~d~vi~~a   92 (262)
T PRK13394         83 GSVDILVSNA   92 (262)
T ss_pred             CCCCEEEECC
Confidence            5678888864

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.72  E-value=2.6  Score=42.42  Aligned_cols=69  Identities=19%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             EEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      +|+=  ||.|..+..+++    .+.+++.+|.|++.++.+++.     ...++.||+.+...       +++ ..-...|
T Consensus       402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~-------L~~-agi~~A~  466 (601)
T PRK03659        402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLEL-------LRA-AGAEKAE  466 (601)
T ss_pred             CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHH-------HHh-cCCccCC
Confidence            4444  455666665554    378999999999999988753     57899999988643       221 2345667


Q ss_pred             EEEEcCCC
Q 023240          220 KVVANIPF  227 (285)
Q Consensus       220 ~Vv~n~P~  227 (285)
                      .++...+-
T Consensus       467 ~vv~~~~d  474 (601)
T PRK03659        467 AIVITCNE  474 (601)
T ss_pred             EEEEEeCC
Confidence            77775554

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=87.59  E-value=4.4  Score=34.94  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             CEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++|=.| |+|.++..+++    .|.+|++++.+++..+.+...+... .++.++.+|+.+..-....+..+.  ...+.
T Consensus         2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~   78 (255)
T TIGR01963         2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAA--AEFGG   78 (255)
T ss_pred             CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HhcCC
Confidence            3566666 55666666554    4889999999987766665554332 368889999987542222222221  12345


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|.||.+.
T Consensus        79 ~d~vi~~a   86 (255)
T TIGR01963        79 LDILVNNA   86 (255)
T ss_pred             CCEEEECC
Confidence            78888764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07791 short chain dehydrogenase; Provisional

Probab=87.46  E-value=5.1  Score=35.88  Aligned_cols=84  Identities=15%  Similarity=0.225  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCH---------HHHHHHHHHhhcC-CCeEEEEcccccccchhhhhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ---------HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~---------~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+.         +.++.+.+.+... .++.++..|+.+..-....++
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~   84 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD   84 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence            56788988976554   3444556688999988764         4444444444332 367788889877543222222


Q ss_pred             HHhhhcCCCCceEEEEcCC
Q 023240          208 LFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P  226 (285)
                      .+.  ...+..|++|.|.-
T Consensus        85 ~~~--~~~g~id~lv~nAG  101 (286)
T PRK07791         85 AAV--ETFGGLDVLVNNAG  101 (286)
T ss_pred             HHH--HhcCCCCEEEECCC
Confidence            221  23367899998743

>PRK05650 short chain dehydrogenase; Provisional

Probab=87.44  E-value=4.8  Score=35.45  Aligned_cols=80  Identities=11%  Similarity=0.035  Sum_probs=49.1

Q ss_pred             EEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          144 IVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +||=.|+ +|.++..    +++.|.+|+.++.+.+..+.+...+... .++.++.+|+.+..-....++.+.  ...+.+
T Consensus         2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~~i   78 (270)
T PRK05650          2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACE--EKWGGI   78 (270)
T ss_pred             EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHcCCC
Confidence            4666664 4444444    4455889999999987766665554433 478888999877543222222221  123568


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |.+|.|..
T Consensus        79 d~lI~~ag   86 (270)
T PRK05650         79 DVIVNNAG   86 (270)
T ss_pred             CEEEECCC
Confidence            99998743

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=87.25  E-value=4.3  Score=35.43  Aligned_cols=82  Identities=13%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+..  +.+.+..+.. .++.++..|+.+..-....++.+.  ...+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g   82 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAV--EVMG   82 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHH--HHcC
Confidence            46789988865544   33445556899999887642  2222233222 368888999887643332222221  2235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        83 ~iD~lv~~ag   92 (251)
T PRK12481         83 HIDILINNAG   92 (251)
T ss_pred             CCCEEEECCC
Confidence            6899998743

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=87.16  E-value=5.9  Score=35.99  Aligned_cols=82  Identities=12%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++++||=.|+. |.++..    +++.|.+|+.++.+++..+.+.+.+... +++.++..|+.+..-....++.+.  ...
T Consensus         5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   81 (322)
T PRK07453          5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR--ALG   81 (322)
T ss_pred             CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH--HhC
Confidence            46678888854 444444    4445889999999987766665555322 368888899877543222222221  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        82 ~~iD~li~nA   91 (322)
T PRK07453         82 KPLDALVCNA   91 (322)
T ss_pred             CCccEEEECC
Confidence            4689999874

>PRK08265 short chain dehydrogenase; Provisional

Probab=87.13  E-value=5.3  Score=35.06  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCccc--H-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G--~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=.|++.|  . ++..+++.|++|+.++.+++..+.+.+..  ..++.++.+|+.+..-....++.+.  ...+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g~   80 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVV--ARFGR   80 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            4678888885433  2 33444556899999999987655544443  2368888999987542222222221  22356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|.+|.|..
T Consensus        81 id~lv~~ag   89 (261)
T PRK08265         81 VDILVNLAC   89 (261)
T ss_pred             CCEEEECCC
Confidence            799988743

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.10  E-value=6.1  Score=34.06  Aligned_cols=94  Identities=26%  Similarity=0.382  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          140 QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       140 ~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++.+||-.|+|. |..+..+++. |.+|++++.+++..+.++..-    .-.++  |..+.....   .+.  ......
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g----~~~~~--~~~~~~~~~---~~~--~~~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG----ADHVI--DYKEEDLEE---ELR--LTGGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC----Cceec--cCCcCCHHH---HHH--HhcCCC
Confidence            5788999999985 6666666665 789999999988887775431    11111  111111110   000  023456


Q ss_pred             ceEEEEcCCC-CCcHHHHHHhccCCCce
Q 023240          218 FAKVVANIPF-NISTDVIKQLLPMGDIF  244 (285)
Q Consensus       218 ~D~Vv~n~P~-~~~~~i~~~l~~~g~~~  244 (285)
                      +|+++.+.+- ......++.+.+.|.++
T Consensus       202 ~d~vi~~~~~~~~~~~~~~~l~~~G~~v  229 (271)
T cd05188         202 ADVVIDAVGGPETLAQALRLLRPGGRIV  229 (271)
T ss_pred             CCEEEECCCCHHHHHHHHHhcccCCEEE
Confidence            8999987654 34444555555544433

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=86.92  E-value=6.4  Score=34.32  Aligned_cols=83  Identities=17%  Similarity=0.187  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.++ ..+.+.+.... .+++.++.+|+.+..-....++-+.  ...+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~g   90 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEAL--EEFG   90 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            46789988875543   3344555689999998883 33334433332 2478889999887543322222221  2235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.|..
T Consensus        91 ~id~li~~ag  100 (258)
T PRK06935         91 KIDILVNNAG  100 (258)
T ss_pred             CCCEEEECCC
Confidence            6799988753

>PLN02780 ketoreductase/ oxidoreductase

Probab=86.90  E-value=5.4  Score=36.60  Aligned_cols=83  Identities=19%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+..+|=.|++.|.   ++..+++.|.+|+.++++++.++...+.+...   .++..+..|+.+ ...+...++.+. ..
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~-~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKET-IE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHH-hc
Confidence            36789988975553   45556667899999999998887776665432   256677778763 111212222221 22


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      ....|++|.|.
T Consensus       130 ~~didilVnnA  140 (320)
T PLN02780        130 GLDVGVLINNV  140 (320)
T ss_pred             CCCccEEEEec
Confidence            22356788774

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.87  E-value=5.2  Score=35.43  Aligned_cols=84  Identities=20%  Similarity=0.207  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|++    .|. ++..+++.|++|+.++.+....+.+++.....+.+.++..|+.+..-....++.+.  ..-
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELG--KVW   82 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHH--hhc
Confidence            46788888975    443 45566667899998888743323333222222456678888877543333333332  223


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus        83 g~iD~linnAg   93 (262)
T PRK07984         83 PKFDGFVHSIG   93 (262)
T ss_pred             CCCCEEEECCc
Confidence            56899998853

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=86.79  E-value=5.9  Score=34.37  Aligned_cols=83  Identities=12%  Similarity=0.097  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++ |.++.    .+++.|++|+.++.+++....+...+... .++.++..|+.+..-....++.+.  ...
T Consensus         8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   84 (254)
T PRK08085          8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIE--KDI   84 (254)
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH--Hhc
Confidence            46688888854 44444    44445889999999987776666555433 367778888877542222222221  233


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +.+|.+|.|..
T Consensus        85 ~~id~vi~~ag   95 (254)
T PRK08085         85 GPIDVLINNAG   95 (254)
T ss_pred             CCCCEEEECCC
Confidence            56899998753

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.75  E-value=5.4  Score=35.56  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++.+|=.|++    .|. ++..+++.|++|+.++++++..+.+++.....+.-..+..|+.+..-....++.+.  ...
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~--~~~   81 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLK--KDL   81 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHH--HHc
Confidence            46788888964    454 34455666899999998854322222222222211567788877653333333332  234


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus        82 g~iDilVnnAG   92 (274)
T PRK08415         82 GKIDFIVHSVA   92 (274)
T ss_pred             CCCCEEEECCc
Confidence            67899998843

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=86.59  E-value=0.52  Score=42.48  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHh--cC-CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHH
Q 023240          127 SEINDQLAAAA--AV-QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG  177 (285)
Q Consensus       127 ~~~~~~l~~~l--~~-~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~  177 (285)
                      -+++..+.+.+  +. ..+++|||+|||.|--.+.....+ ..+...|.|.+.++
T Consensus        99 ~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen   99 VDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            34555555443  22 268899999999999998887776 68999999887773

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=86.49  E-value=7.6  Score=33.75  Aligned_cols=84  Identities=17%  Similarity=0.204  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.+.+..+.+...+... .++.++..|+.+..-.......+.  ...+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~~   87 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAL--SKLG   87 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            46789999955442   23334555889999999888777665554432 367788889877542221111111  2235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.+..
T Consensus        88 ~~d~li~~ag   97 (255)
T PRK06113         88 KVDILVNNAG   97 (255)
T ss_pred             CCCEEEECCC
Confidence            6799988743

>PRK06196 oxidoreductase; Provisional

Probab=86.44  E-value=5.7  Score=36.02  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++ |.++..++    +.|.+|+.++.+++..+.+...+.   ++.++.+|+.+..-.....+.+.  ...+
T Consensus        25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~---~v~~~~~Dl~d~~~v~~~~~~~~--~~~~   98 (315)
T PRK06196         25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID---GVEVVMLDLADLESVRAFAERFL--DSGR   98 (315)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---hCeEEEccCCCHHHHHHHHHHHH--hcCC
Confidence            46788888854 55555444    458899999999877665554442   47888999887643222222221  2235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|..
T Consensus        99 ~iD~li~nAg  108 (315)
T PRK06196         99 RIDILINNAG  108 (315)
T ss_pred             CCCEEEECCC
Confidence            6899998753

>PRK05993 short chain dehydrogenase; Provisional

Probab=86.42  E-value=5.1  Score=35.53  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             CCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++||=.|++ |.++..+    ++.|.+|++++.+++.++.+..     ..++++.+|+.+..-....++.+.. ...+.
T Consensus         4 ~k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~-~~~g~   76 (277)
T PRK05993          4 KRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLE-LSGGR   76 (277)
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHH-HcCCC
Confidence            4678888864 4444444    4458899999999877665442     2577888898774322222222111 12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        77 id~li~~A   84 (277)
T PRK05993         77 LDALFNNG   84 (277)
T ss_pred             ccEEEECC
Confidence            89999874

>PRK07576 short chain dehydrogenase; Provisional

Probab=86.42  E-value=6.9  Score=34.42  Aligned_cols=82  Identities=15%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|. +|.++..    ++..|++|+.++.+++-.+.....+... .++.++..|+.+..-....++-+.  ...
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~--~~~   84 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIA--DEF   84 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            4678888885 4554444    4445889999999987766555444432 367788889876432222111111  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        85 ~~iD~vi~~a   94 (264)
T PRK07576         85 GPIDVLVSGA   94 (264)
T ss_pred             CCCCEEEECC
Confidence            5679998775

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.39  E-value=4.9  Score=35.12  Aligned_cols=82  Identities=12%  Similarity=0.172  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|.+    .|. ++..+++.|.+|+.++.+++..+.+++..  ..++.++..|+.+..-....++.+.  ...
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   81 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV--DEEDLLVECDVASDESIERAFATIK--ERV   81 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHH--HHh
Confidence            46788888865    444 34555666899999988854433333321  1367788889877543333333332  123


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus        82 g~iD~lv~nAg   92 (252)
T PRK06079         82 GKIDGIVHAIA   92 (252)
T ss_pred             CCCCEEEEccc
Confidence            67899998753

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.25  E-value=2.2  Score=40.47  Aligned_cols=52  Identities=19%  Similarity=0.194  Sum_probs=41.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~  184 (285)
                      -.+.|++.++++||-|.+|.......+.....+|++||+|+.-+..++-+..
T Consensus        27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   27 DMEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence            4456778889999999988777666666667899999999998888776654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK12939 short chain dehydrogenase; Provisional

Probab=86.18  E-value=7.1  Score=33.51  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|+ +|.++..++    +.|.+|+.++.+++......+.++.. .++.++.+|+.+..-....++.+.  ..-
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   82 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAA--AAL   82 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            4577887774 556555554    34889999999988776665555432 378899999987543222222221  122


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|.||.+.
T Consensus        83 ~~id~vi~~a   92 (250)
T PRK12939         83 GGLDGLVNNA   92 (250)
T ss_pred             CCCCEEEECC
Confidence            5689988864

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.17  E-value=5.5  Score=35.04  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|+    |.|. ++..+++.|++|+....+....+.+++.....+....+..|+.+..-....++.+.  ...
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   82 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLG--KHW   82 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHH--HHh
Confidence            4678898896    3444 33444556889988776544333343333322445567888877543333333322  233


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        83 g~iD~lVnnA   92 (261)
T PRK08690         83 DGLDGLVHSI   92 (261)
T ss_pred             CCCcEEEECC
Confidence            6789999985

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=86.16  E-value=4  Score=40.76  Aligned_cols=80  Identities=15%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhc----------CCCeEEEEcccccccch
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVKCHIR  202 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~----------~~~v~~~~gD~~~~~~~  202 (285)
                      ++...+++||=.|+ +|.++..++    +.|.+|++++++.+........+..          ..++.++.+|+.+....
T Consensus        75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI  153 (576)
T PLN03209         75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI  153 (576)
T ss_pred             cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence            34446778888885 466665554    4488999999998776655443321          13588999999875311


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                         .+.      -+..|+||.+.-
T Consensus       154 ---~~a------LggiDiVVn~AG  168 (576)
T PLN03209        154 ---GPA------LGNASVVICCIG  168 (576)
T ss_pred             ---HHH------hcCCCEEEEccc
Confidence               111      245788888743

>PRK06720 hypothetical protein; Provisional

Probab=86.16  E-value=9.2  Score=31.73  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++.+|=.|.+.|.   ++..+++.|.+|+.+|.+++..+.+.+.+... +.+.++..|..+..-....++.+.  ...+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~--~~~G   92 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITL--NAFS   92 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            46678888865433   34445566899999999987776655554432 356677888766532222222221  2335


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.|..
T Consensus        93 ~iDilVnnAG  102 (169)
T PRK06720         93 RIDMLFQNAG  102 (169)
T ss_pred             CCCEEEECCC
Confidence            6899998854

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=86.11  E-value=8.8  Score=34.51  Aligned_cols=86  Identities=14%  Similarity=0.280  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+.++|=-|+-.|.   ++..+|++|.+|+-+-++++.++.+++.++...  .+.++..|..+..-.....+.+.  ...
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~--~~~   82 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK--ERG   82 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH--hcC
Confidence            45677777764443   566777789999999999999998888887532  67899999988764444444332  233


Q ss_pred             CCceEEEEcCCCC
Q 023240          216 SGFAKVVANIPFN  228 (285)
Q Consensus       216 ~~~D~Vv~n~P~~  228 (285)
                      ...|++|-|--|.
T Consensus        83 ~~IdvLVNNAG~g   95 (265)
T COG0300          83 GPIDVLVNNAGFG   95 (265)
T ss_pred             CcccEEEECCCcC
Confidence            5789999886554

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=86.05  E-value=7.1  Score=33.73  Aligned_cols=83  Identities=16%  Similarity=0.234  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhh-c
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR-K  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~-~  213 (285)
                      ++++||=.|+ +|.++..++    +.|.+|++++.+.+..+.....+...  .++.++.+|+......+ ..++++.. .
T Consensus        11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~   88 (247)
T PRK08945         11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQN-YQQLADTIEE   88 (247)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHH-HHHHHHHHHH
Confidence            5778999994 566655544    44889999999987766655555433  26778888875432211 11111111 1


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+..|.||.|.
T Consensus        89 ~~~~id~vi~~A  100 (247)
T PRK08945         89 QFGRLDGVLHNA  100 (247)
T ss_pred             HhCCCCEEEECC
Confidence            235689998874

>PRK06182 short chain dehydrogenase; Validated

Probab=85.82  E-value=6.4  Score=34.68  Aligned_cols=78  Identities=12%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++||=.|+ +|.++..++    +.|.+|++++.+++.++....     .+++++.+|+.+.......++.+.  ...+.
T Consensus         3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~--~~~~~   74 (273)
T PRK06182          3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTII--AEEGR   74 (273)
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence            467887885 444555444    458899999999876544322     258888999877543222222221  22356


Q ss_pred             ceEEEEcCCC
Q 023240          218 FAKVVANIPF  227 (285)
Q Consensus       218 ~D~Vv~n~P~  227 (285)
                      .|.+|.|..+
T Consensus        75 id~li~~ag~   84 (273)
T PRK06182         75 IDVLVNNAGY   84 (273)
T ss_pred             CCEEEECCCc
Confidence            8999988643

>PRK06181 short chain dehydrogenase; Provisional

Probab=85.81  E-value=7.2  Score=34.00  Aligned_cols=80  Identities=15%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             CEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+||=.|+ +|.++..+    ++.|.+|++++.++.-.+.+...+... .++.++.+|+.+..-....++-+.  ...+.
T Consensus         2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~   78 (263)
T PRK06181          2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAV--ARFGG   78 (263)
T ss_pred             CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            35776674 44555444    445889999999987666555554433 368888999877543222222221  12245


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|.||.+.
T Consensus        79 id~vi~~a   86 (263)
T PRK06181         79 IDILVNNA   86 (263)
T ss_pred             CCEEEECC
Confidence            78888873

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=85.79  E-value=12  Score=33.63  Aligned_cols=44  Identities=34%  Similarity=0.530  Sum_probs=35.3

Q ss_pred             cCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240          138 AVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       138 ~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~  181 (285)
                      .+.++.+||..|+| .|..++.+|+. |.+|++++.+++..+.+++
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            45677889988876 47777777776 8899999999998888855

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.51  E-value=6.5  Score=34.94  Aligned_cols=83  Identities=17%  Similarity=0.100  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++    .|. ++..+++.|++|+.+..++...+.+++..+..+....+..|+.+..-....++.+.  ...
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   86 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLE--KKW   86 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHH--Hhc
Confidence            45788888964    554 34555666899988876643333333332222445567888877543333333332  233


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        87 g~iD~lv~nA   96 (272)
T PRK08159         87 GKLDFVVHAI   96 (272)
T ss_pred             CCCcEEEECC
Confidence            5789999885

>PRK06125 short chain dehydrogenase; Provisional

Probab=85.48  E-value=8.2  Score=33.65  Aligned_cols=78  Identities=15%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++.| ++.    .+++.|++|+.++.+++..+.+...+...  .++.++..|+.+..-   ...+++   .
T Consensus         6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~---~~~~~~---~   78 (259)
T PRK06125          6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEA---REQLAA---E   78 (259)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHH---HHHHHH---H
Confidence            4678888886433 443    34556889999999988777666555432  367888888876431   122222   2


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|.+|.|.
T Consensus        79 ~g~id~lv~~a   89 (259)
T PRK06125         79 AGDIDILVNNA   89 (259)
T ss_pred             hCCCCEEEECC
Confidence            35689998874

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=85.28  E-value=1.4  Score=38.40  Aligned_cols=61  Identities=18%  Similarity=0.205  Sum_probs=42.1

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv  222 (285)
                      -++|||||=+........ .-.+|+.||+++             ..-.+.+.|+.+.|.+.         .+.+.||+|+
T Consensus        53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns-------------~~~~I~qqDFm~rplp~---------~~~e~FdvIs  109 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNS-------------QHPGILQQDFMERPLPK---------NESEKFDVIS  109 (219)
T ss_pred             ceEEeecccCCCCccccc-CceeeEEeecCC-------------CCCCceeeccccCCCCC---------CcccceeEEE
Confidence            489999998666443311 124799999884             13457899999988643         3457799998


Q ss_pred             EcCC
Q 023240          223 ANIP  226 (285)
Q Consensus       223 ~n~P  226 (285)
                      ..+-
T Consensus       110 ~SLV  113 (219)
T PF11968_consen  110 LSLV  113 (219)
T ss_pred             EEEE
Confidence            7644

>PRK06197 short chain dehydrogenase; Provisional

Probab=85.28  E-value=7.4  Score=35.04  Aligned_cols=82  Identities=12%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .+++||=.|+ +|.++..    +++.|.+|+.+..+++..+.+.+.+..   ..++.++.+|+.+..-....++-+.  .
T Consensus        15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~   91 (306)
T PRK06197         15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR--A   91 (306)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH--h
Confidence            4678887775 3444444    444588999999988776655544432   1368888999887653322222221  1


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+..|++|.|.
T Consensus        92 ~~~~iD~li~nA  103 (306)
T PRK06197         92 AYPRIDLLINNA  103 (306)
T ss_pred             hCCCCCEEEECC
Confidence            235689998874

>PTZ00357 methyltransferase; Provisional

Probab=85.25  E-value=2.7  Score=42.67  Aligned_cols=82  Identities=24%  Similarity=0.272  Sum_probs=50.7

Q ss_pred             EEEEEcCcccHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHhh---cC--------CCeEEEEcccccccchhhhh
Q 023240          144 IVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFA---SI--------DQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~----~--~~V~giD~~~~~v~~a~~~~~---~~--------~~v~~~~gD~~~~~~~~~~~  206 (285)
                      .|+=+|+|-|-+.....+.    +  .+|++||.|+..+.....+..   ..        +.|+++..|+.++.......
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999976544332    2  489999999775555444432   22        24899999999985421000


Q ss_pred             hHHhhhcCCCCceEEEEcCC
Q 023240          207 SLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      .. .....-+++|+||+.+-
T Consensus       783 s~-~~P~~~gKaDIVVSELL  801 (1072)
T PTZ00357        783 SL-TLPADFGLCDLIVSELL  801 (1072)
T ss_pred             cc-cccccccccceehHhhh
Confidence            00 00011136899999643

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.22  E-value=7.5  Score=34.17  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCcc----cH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~----G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++.+|=.|++.    |. ++..+++.|++|+..+.++...+.+++.....+...++..|+.+..-....++.+.  ...
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~--~~~   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK--EKW   84 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH--HHc
Confidence            467888888854    43 34556667899998888753323333322222333456778877543333333222  233


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|..
T Consensus        85 g~iDilVnnag   95 (260)
T PRK06603         85 GSFDFLLHGMA   95 (260)
T ss_pred             CCccEEEEccc
Confidence            67899988753

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=85.15  E-value=3.3  Score=37.13  Aligned_cols=64  Identities=14%  Similarity=0.250  Sum_probs=42.3

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHhC-------CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240          138 AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~-------~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (285)
                      .+.+...++|+|||.|.++.+++..-       ..++.||....... +-..+...   +.++=+..|+.++.+.
T Consensus        15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~l~   88 (259)
T PF05206_consen   15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLDLS   88 (259)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccchh
Confidence            34466789999999999999998752       47899998543321 11222222   2566677788777653

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK06500 short chain dehydrogenase; Provisional

Probab=85.09  E-value=8.6  Score=33.01  Aligned_cols=81  Identities=16%  Similarity=0.210  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++||=.|++ |.++..    +++.|.+|+.++.+++.++.+.+.+.  .++.++..|..+..-....++.+.  ...+
T Consensus         5 ~~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (249)
T PRK06500          5 QGKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALA--EAFG   79 (249)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHH--HHhC
Confidence            35677777754 444443    44558899999999776665554432  367788888876543222333332  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|..
T Consensus        80 ~id~vi~~ag   89 (249)
T PRK06500         80 RLDAVFINAG   89 (249)
T ss_pred             CCCEEEECCC
Confidence            6899988754

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=85.03  E-value=4.5  Score=32.50  Aligned_cols=82  Identities=13%  Similarity=0.171  Sum_probs=51.7

Q ss_pred             EEEEEcCcccH---HHHHHHHhC-CEEEEEeCC--HHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          144 IVLEIGPGTGS---LTNVLLNAG-ATVLAIEKD--QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~-~~V~giD~~--~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +||=.|++.|.   ++..+++.+ ..|+.+..+  .+..+.....++. ..++.++..|+.+..-....++.+.  ...+
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI--KRFG   79 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH--HHHS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence            46667766443   444555564 488999998  6666666555543 2488999999877643333333332  2456


Q ss_pred             CceEEEEcCCC
Q 023240          217 GFAKVVANIPF  227 (285)
Q Consensus       217 ~~D~Vv~n~P~  227 (285)
                      ..|++|.|...
T Consensus        80 ~ld~li~~ag~   90 (167)
T PF00106_consen   80 PLDILINNAGI   90 (167)
T ss_dssp             SESEEEEECSC
T ss_pred             ccccccccccc
Confidence            78999998543

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07831 short chain dehydrogenase; Provisional

Probab=85.02  E-value=8.3  Score=33.67  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC---cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-C--CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGP---GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGc---G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~--~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .++++|=.|+   |.|. ++..+++.|.+|+.+|.+++.++.+.+.++. .  .++.++.+|+.+..-....++.+.  .
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~   93 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV--E   93 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH--H
Confidence            4678888885   3454 3445556689999999998877766665543 2  267888999877532222222221  1


Q ss_pred             CCCCceEEEEcCC
Q 023240          214 SSSGFAKVVANIP  226 (285)
Q Consensus       214 ~~~~~D~Vv~n~P  226 (285)
                      ..+..|++|.|.-
T Consensus        94 ~~g~id~li~~ag  106 (262)
T PRK07831         94 RLGRLDVLVNNAG  106 (262)
T ss_pred             HcCCCCEEEECCC
Confidence            2356899988754

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=85.01  E-value=0.56  Score=40.86  Aligned_cols=73  Identities=16%  Similarity=0.216  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC  199 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~  199 (285)
                      |-+....++.+.+.++.+.+|.--|.|..+..+.+.  ..+++++|.+|-+.+.|....+..  +.+..+.|.+..+
T Consensus        29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~  105 (303)
T KOG2782|consen   29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYI  105 (303)
T ss_pred             ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHH
Confidence            456778888999999999999999999999998887  468999999999999988776421  3444445555444

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=84.83  E-value=8  Score=35.48  Aligned_cols=48  Identities=25%  Similarity=0.371  Sum_probs=34.3

Q ss_pred             HHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      ......++++||=.||| .|.++..+|+. |+ +|+++|.+++..+.+++.
T Consensus       163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l  213 (343)
T PRK09880        163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM  213 (343)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence            33444568889888875 34455566665 66 799999999999888763

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.66  E-value=5.4  Score=34.99  Aligned_cols=81  Identities=21%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCc-ccHHHH----HHHHhCCEEEEEeCCH--HHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPG-TGSLTN----VLLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG-~G~~t~----~la~~~~~V~giD~~~--~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .++++|=.|+| ++.++.    .+++.|++|+.++++.  +..+.....+.  .++.++..|+.+..-....++.+.  .
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~--~   81 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP--EPAPVLELDVTNEEHLASLADRVR--E   81 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC--CCCcEEeCCCCCHHHHHHHHHHHH--H
Confidence            46789999983 344443    4455688999988763  44444444332  256778888877643333333322  2


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+..|++|.|.
T Consensus        82 ~~g~iD~li~nA   93 (256)
T PRK07889         82 HVDGLDGVVHSI   93 (256)
T ss_pred             HcCCCcEEEEcc
Confidence            336789999874

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.64  E-value=2.4  Score=42.09  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=44.5

Q ss_pred             CcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          150 PGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       150 cG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      ||.|..+..+++    .+.+|+.||.|++.++.+++.     +...+.||+.+...       +++ ..-...|.++...
T Consensus       423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~-------L~~-a~i~~a~~viv~~  489 (558)
T PRK10669        423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEI-------MQL-AHLDCARWLLLTI  489 (558)
T ss_pred             ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHH-------HHh-cCccccCEEEEEc
Confidence            555666665554    378999999999999888753     68899999988542       111 2335678776654


Q ss_pred             CC
Q 023240          226 PF  227 (285)
Q Consensus       226 P~  227 (285)
                      +-
T Consensus       490 ~~  491 (558)
T PRK10669        490 PN  491 (558)
T ss_pred             CC
Confidence            43

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=84.62  E-value=1.9  Score=42.28  Aligned_cols=59  Identities=22%  Similarity=0.503  Sum_probs=45.4

Q ss_pred             CEEEEEcCcccHHHHHHHHh------CCEEEEEeCCHHHHHHHHHH-hhcC-CCeEEEEcccccccc
Q 023240          143 DIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRER-FASI-DQLKVLQEDFVKCHI  201 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~------~~~V~giD~~~~~v~~a~~~-~~~~-~~v~~~~gD~~~~~~  201 (285)
                      ..|+=+|+|-|-+.....+.      ..++++||.+|.++-.++.. ++.. ++|+++.+|+.+++.
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a  435 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA  435 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC
Confidence            36888999999987655432      35899999999999887753 3322 489999999999873

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=84.57  E-value=6.3  Score=34.40  Aligned_cols=72  Identities=22%  Similarity=0.302  Sum_probs=46.0

Q ss_pred             EEEEEcCcc-cH-HHHHHHHhCCEEEEEeCCHHHHHHHHH-HhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          144 IVLEIGPGT-GS-LTNVLLNAGATVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       144 ~VLDiGcG~-G~-~t~~la~~~~~V~giD~~~~~v~~a~~-~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      +++=+|||. |+ ++..|.+.|..|+.||.+++.++.... ..    ....+++|+.+...       +++ ..-..+|+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~-------L~~-agi~~aD~   69 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDV-------LEE-AGIDDADA   69 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHH-------HHh-cCCCcCCE
Confidence            455566663 22 334444558899999999999888443 32    67899999988642       221 33456777


Q ss_pred             EEEcCCC
Q 023240          221 VVANIPF  227 (285)
Q Consensus       221 Vv~n~P~  227 (285)
                      +++--.-
T Consensus        70 vva~t~~   76 (225)
T COG0569          70 VVAATGN   76 (225)
T ss_pred             EEEeeCC
Confidence            7774443

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=84.50  E-value=1.8  Score=38.10  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~  181 (285)
                      .++..+.+.+...+..+++|+-||+|.++..+...+..|+.-|+++..+...+.
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~   60 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA   60 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence            345666666654356799999999999999887778899999999987766663

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.33  E-value=3.4  Score=39.49  Aligned_cols=88  Identities=18%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc
Q 023240          127 SEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~  200 (285)
                      ++.+..+...+...  ...+|+=+|+  |.++..+++    .+.+|+.+|.+++.++.+++..   +++.++.||+.+..
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~  288 (453)
T PRK09496        214 REHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---PNTLVLHGDGTDQE  288 (453)
T ss_pred             HHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHH
Confidence            44455555544322  2467887777  555555544    3789999999999988877754   36788999987653


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      .       ++. .....+|.|++-.+-
T Consensus       289 ~-------L~~-~~~~~a~~vi~~~~~  307 (453)
T PRK09496        289 L-------LEE-EGIDEADAFIALTND  307 (453)
T ss_pred             H-------HHh-cCCccCCEEEECCCC
Confidence            2       111 233556777775553

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=84.27  E-value=2.5  Score=38.01  Aligned_cols=84  Identities=20%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .++....|+|+..|..|-.+.+++-.|++||-- .|.+.    +-..|.|+....|..++.            +.....|
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng-~ma~s----L~dtg~v~h~r~DGfk~~------------P~r~~id  272 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNG-PMAQS----LMDTGQVTHLREDGFKFR------------PTRSNID  272 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcceEEEEeccc-hhhhh----hhcccceeeeeccCcccc------------cCCCCCc
Confidence            468899999999999999999999999999954 33322    223478999999998875            2345678


Q ss_pred             EEEEcCC---CCCcHHHHHHhccC
Q 023240          220 KVVANIP---FNISTDVIKQLLPM  240 (285)
Q Consensus       220 ~Vv~n~P---~~~~~~i~~~l~~~  240 (285)
                      -.|++.-   -....-+.+||.++
T Consensus       273 WmVCDmVEkP~rv~~li~~Wl~nG  296 (358)
T COG2933         273 WMVCDMVEKPARVAALIAKWLVNG  296 (358)
T ss_pred             eEEeehhcCcHHHHHHHHHHHHcc
Confidence            8888753   33334445566543

>PRK08251 short chain dehydrogenase; Provisional

Probab=84.08  E-value=9.5  Score=32.83  Aligned_cols=81  Identities=12%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      ++++|=.| |+|.++..+++    .+.+|+.++.++...+.....+...   .++.++.+|+.+..-....++-+.  ..
T Consensus         2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   78 (248)
T PRK08251          2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR--DE   78 (248)
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH--HH
Confidence            35688778 45666655544    4789999999988777665554322   268888999887542222222221  22


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|.+|.|.
T Consensus        79 ~~~id~vi~~a   89 (248)
T PRK08251         79 LGGLDRVIVNA   89 (248)
T ss_pred             cCCCCEEEECC
Confidence            35679998874

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.79  E-value=8.3  Score=34.90  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC-HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~-~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.+|.+ ....+.+...+... +++.++.+|+.+..-....++.+.  . .
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~--~-~   87 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAV--G-L   87 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--H-h
Confidence            46788888876544   344556668999999874 33444444444332 378888999887543332222221  2 4


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        88 g~iD~li~nA   97 (306)
T PRK07792         88 GGLDIVVNNA   97 (306)
T ss_pred             CCCCEEEECC
Confidence            6789999874

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=83.74  E-value=10  Score=32.96  Aligned_cols=80  Identities=13%  Similarity=0.179  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.| |+|.++..++    +.|.+|+.++.+.+..+.......  .++.++.+|+.+..-....++.+.  ...+
T Consensus         5 ~~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (257)
T PRK07067          5 QGKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAV--ERFG   79 (257)
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            356788787 4455555444    458899999999887766655442  368888999876543322232222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|.+|.|.
T Consensus        80 ~id~li~~a   88 (257)
T PRK07067         80 GIDILFNNA   88 (257)
T ss_pred             CCCEEEECC
Confidence            678888864

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=83.73  E-value=8.4  Score=33.68  Aligned_cols=81  Identities=15%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCccc--H-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G--~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=.|++.|  . ++..+++.|.+|+.++.+.+.++..+...  .+++..+.+|+.+..-....++.+.  ...+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~   79 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCV--AAFGK   79 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHH--HHhCC
Confidence            4668888886433  2 33344556899999999987666554332  1367888888876532222222211  12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        80 id~li~~A   87 (262)
T TIGR03325        80 IDCLIPNA   87 (262)
T ss_pred             CCEEEECC
Confidence            78888874

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=83.71  E-value=4.1  Score=35.27  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC-CCceEEEEcC
Q 023240          151 GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS-SGFAKVVANI  225 (285)
Q Consensus       151 G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~-~~~D~Vv~n~  225 (285)
                      |.|. .+..+++.|++|+.++.+.+.++.+.+.+......+++..|+.+..-....++.+.+  .. +..|++|.|.
T Consensus         7 GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~g~iD~lV~~a   81 (241)
T PF13561_consen    7 GIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVE--RFGGRIDILVNNA   81 (241)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHH--HHCSSESEEEEEE
T ss_pred             ChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHh--hcCCCeEEEEecc
Confidence            3444 445566679999999999997544444433222355799998765443333333322  23 7889988763

...

>PRK05717 oxidoreductase; Validated

Probab=83.34  E-value=9.6  Score=33.10  Aligned_cols=82  Identities=13%  Similarity=0.130  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|.+ |.++..    +++.|++|+.++.++...+...+...  .++.++.+|+.+..-.....+-+.  ...+
T Consensus         9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g   83 (255)
T PRK05717          9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALG--ENAWFIAMDVADEAQVAAGVAEVL--GQFG   83 (255)
T ss_pred             CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcC--CceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            46788888853 444444    44458899999988765544433331  367888999887542222122221  1235


Q ss_pred             CceEEEEcCCC
Q 023240          217 GFAKVVANIPF  227 (285)
Q Consensus       217 ~~D~Vv~n~P~  227 (285)
                      .+|.+|.|..+
T Consensus        84 ~id~li~~ag~   94 (255)
T PRK05717         84 RLDALVCNAAI   94 (255)
T ss_pred             CCCEEEECCCc
Confidence            68999987543

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=83.01  E-value=2.6  Score=33.88  Aligned_cols=50  Identities=20%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             EEcCccc--HHHHHHH--Hh--CCEEEEEeCCHHHHHHHHHH--hhcC---CCeEEEEccc
Q 023240          147 EIGPGTG--SLTNVLL--NA--GATVLAIEKDQHMVGLVRER--FASI---DQLKVLQEDF  196 (285)
Q Consensus       147 DiGcG~G--~~t~~la--~~--~~~V~giD~~~~~v~~a~~~--~~~~---~~v~~~~gD~  196 (285)
                      |||+..|  ..+..+.  ..  +.+|+++|.++..++.++.+  +..+   +.+++.....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  6666554  23  57899999999999999998  4433   2456555433

; PDB: 2PY6_A.

>PRK06057 short chain dehydrogenase; Provisional

Probab=83.00  E-value=11  Score=32.81  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++||=.|++ |.++..    +++.|++|+.++.++.-.+.....+.    ..++..|..+.......++.+.  ...+
T Consensus         6 ~~~~vlItGas-ggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~--~~~~   78 (255)
T PRK06057          6 AGRVAVITGGG-SGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDAVNALFDTAA--ETYG   78 (255)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence            46789999974 444444    44458899999998776655544432    2567778776543222222221  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.|..
T Consensus        79 ~id~vi~~ag   88 (255)
T PRK06057         79 SVDIAFNNAG   88 (255)
T ss_pred             CCCEEEECCC
Confidence            6798888743

>PRK06914 short chain dehydrogenase; Provisional

Probab=82.92  E-value=12  Score=32.97  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=50.1

Q ss_pred             CCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      ++++|=.|+ +|.++..+    ++.|++|++++.+++..+........   ..++.++.+|+.+...... ++-+.  ..
T Consensus         3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~--~~   78 (280)
T PRK06914          3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVL--KE   78 (280)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHH--Hh
Confidence            457888885 44444444    44588999999988776655544332   1378899999987543222 22221  22


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|.||.+..
T Consensus        79 ~~~id~vv~~ag   90 (280)
T PRK06914         79 IGRIDLLVNNAG   90 (280)
T ss_pred             cCCeeEEEECCc
Confidence            356799888753

>PRK08628 short chain dehydrogenase; Provisional

Probab=82.83  E-value=11  Score=32.67  Aligned_cols=83  Identities=13%  Similarity=0.094  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++ |.++..    +++.|.+|+.++.++...+..+.......++.++..|+.+..-....++-+.  ...+
T Consensus         6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   82 (258)
T PRK08628          6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTV--AKFG   82 (258)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HhcC
Confidence            46688888854 444444    4455889999998877663333222222478889999876542222222211  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.||.|..
T Consensus        83 ~id~vi~~ag   92 (258)
T PRK08628         83 RIDGLVNNAG   92 (258)
T ss_pred             CCCEEEECCc
Confidence            6799988754

>PRK06940 short chain dehydrogenase; Provisional

Probab=82.73  E-value=11  Score=33.53  Aligned_cols=79  Identities=13%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             EEEEEcCcccHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          144 IVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~---~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .+|=-|+  |.++..+++   .|.+|+.++.+++.++.+.+.+...+ ++.++..|+.+..-....++.+   ...+..|
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~---~~~g~id   78 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA---QTLGPVT   78 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH---HhcCCCC
Confidence            4555554  456666554   37899999999877666555554333 6788889987754332222222   2235689


Q ss_pred             EEEEcCCC
Q 023240          220 KVVANIPF  227 (285)
Q Consensus       220 ~Vv~n~P~  227 (285)
                      .+|.|.-.
T Consensus        79 ~li~nAG~   86 (275)
T PRK06940         79 GLVHTAGV   86 (275)
T ss_pred             EEEECCCc
Confidence            99998543

>PRK05855 short chain dehydrogenase; Validated

Probab=82.73  E-value=9.3  Score=37.34  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=52.7

Q ss_pred             CCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +.++|=+|+ +|.++..    +++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..-....++.+.  ...+
T Consensus       315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g  391 (582)
T PRK05855        315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVR--AEHG  391 (582)
T ss_pred             CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence            457887775 4444444    4455889999999988777666555433 378889999987653333333322  2335


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus       392 ~id~lv~~A  400 (582)
T PRK05855        392 VPDIVVNNA  400 (582)
T ss_pred             CCcEEEECC
Confidence            689999874

>PRK09186 flagellin modification protein A; Provisional

Probab=82.66  E-value=11  Score=32.54  Aligned_cols=82  Identities=22%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ++++||=.|++ |.++..+    ++.|.+|+.++.+++..+.+...+...   ..+.++.+|+.+..-....++.+.  .
T Consensus         3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~   79 (256)
T PRK09186          3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA--E   79 (256)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH--H
Confidence            45788888864 4444444    445889999999988777666555321   256677889887542222222221  1


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      .-+..|.+|.|.
T Consensus        80 ~~~~id~vi~~A   91 (256)
T PRK09186         80 KYGKIDGAVNCA   91 (256)
T ss_pred             HcCCccEEEECC
Confidence            234579999874

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=82.61  E-value=0.71  Score=35.35  Aligned_cols=15  Identities=27%  Similarity=0.406  Sum_probs=12.4

Q ss_pred             CceEEEEcCCCCCcH
Q 023240          217 GFAKVVANIPFNIST  231 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~  231 (285)
                      .||+||+||||....
T Consensus         2 kFD~VIGNPPY~~~~   16 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIK   16 (106)
T ss_pred             CcCEEEECCCChhhc
Confidence            489999999996554

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK07825 short chain dehydrogenase; Provisional

Probab=82.53  E-value=11  Score=33.09  Aligned_cols=78  Identities=17%  Similarity=0.108  Sum_probs=49.3

Q ss_pred             CCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++++|=.|++. .++.    .+++.|.+|+.++.+++.++.+...+.   ++.++.+|+.+..-....++-+..  ..+.
T Consensus         5 ~~~ilVtGasg-giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~--~~~~   78 (273)
T PRK07825          5 GKVVAITGGAR-GIGLATARALAALGARVAIGDLDEALAKETAAELG---LVVGGPLDVTDPASFAAFLDAVEA--DLGP   78 (273)
T ss_pred             CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---cceEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence            56888888654 3444    345558899999999887766554432   577888998775432222222221  2256


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        79 id~li~~a   86 (273)
T PRK07825         79 IDVLVNNA   86 (273)
T ss_pred             CCEEEECC
Confidence            79999874

>PRK06701 short chain dehydrogenase; Provisional

Probab=82.52  E-value=10  Score=33.96  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCH-HHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~-~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|++.|.   ++..+++.|.+|+.++.++ ...+.....++.. .++.++.+|+.+.......++.+.  ...
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~--~~~  122 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV--REL  122 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            46788888854333   3334455688999998874 2333333333332 368889999877543332222222  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|.+|.|.
T Consensus       123 ~~iD~lI~~A  132 (290)
T PRK06701        123 GRLDILVNNA  132 (290)
T ss_pred             CCCCEEEECC
Confidence            4679988764

>PRK07074 short chain dehydrogenase; Provisional

Probab=82.44  E-value=13  Score=32.25  Aligned_cols=79  Identities=18%  Similarity=0.210  Sum_probs=47.9

Q ss_pred             CEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +++|=.|++. .++..    |++.|.+|+.++.++.-.+.....+. ..++.++.+|+.+..-....++-+.  ...+..
T Consensus         3 k~ilItGat~-~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~~   78 (257)
T PRK07074          3 RTALVTGAAG-GIGQALARRFLAAGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAASLAAALANAA--AERGPV   78 (257)
T ss_pred             CEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHH--HHcCCC
Confidence            4677777644 34444    44558899999999877665554442 2368888999877643222221111  122457


Q ss_pred             eEEEEcC
Q 023240          219 AKVVANI  225 (285)
Q Consensus       219 D~Vv~n~  225 (285)
                      |.||.+.
T Consensus        79 d~vi~~a   85 (257)
T PRK07074         79 DVLVANA   85 (257)
T ss_pred             CEEEECC
Confidence            9988875

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=82.35  E-value=13  Score=32.51  Aligned_cols=83  Identities=8%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEe-CCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD-~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.+. .+++.++...+.++.  ..++.++..|+.+..-....++.+.  ..
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   84 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID--ED   84 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence            46788888865443   4445566688988875 455555544444332  2368889999987543333333332  12


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|++|.|.
T Consensus        85 ~g~id~lv~nA   95 (260)
T PRK08416         85 FDRVDFFISNA   95 (260)
T ss_pred             cCCccEEEECc
Confidence            35689999875

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=82.33  E-value=12  Score=32.19  Aligned_cols=82  Identities=17%  Similarity=0.260  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.++.  ..+....... +++.++..|+.+..-....++.+.  ...+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV--EEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46789988975432   23344455889999998752  2222222222 368889999887543222222221  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|.+|.|.-
T Consensus        80 ~~d~li~~ag   89 (248)
T TIGR01832        80 HIDILVNNAG   89 (248)
T ss_pred             CCCEEEECCC
Confidence            6899998753

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.26  E-value=11  Score=33.15  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCC---HHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD---QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~---~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .++++|=.|.+    .|. ++..+++.|++|+.++.+   ++.++.+.+... .+++.++..|+.+..-....++.+.  
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~--   82 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIK--   82 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHH--
Confidence            46789999964    444 344455568899988654   334444433332 2467888899877643333333322  


Q ss_pred             cCCCCceEEEEcC
Q 023240          213 KSSSGFAKVVANI  225 (285)
Q Consensus       213 ~~~~~~D~Vv~n~  225 (285)
                      ..-+..|++|.|.
T Consensus        83 ~~~g~ld~lv~na   95 (257)
T PRK08594         83 EEVGVIHGVAHCI   95 (257)
T ss_pred             HhCCCccEEEECc
Confidence            2236789998774

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=82.20  E-value=11  Score=32.65  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=48.9

Q ss_pred             CCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhc-C--CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~-~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +++||=.|+ +|.++..    +++.|++|+.++.+....+.....+.. .  .++.++.+|+.+.......++-+.  ..
T Consensus         2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~   78 (259)
T PRK12384          2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVD--EI   78 (259)
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHH--HH
Confidence            356888885 4555544    445588999999998766555444332 1  368889999876532222222111  12


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|.+|.|.
T Consensus        79 ~~~id~vv~~a   89 (259)
T PRK12384         79 FGRVDLLVYNA   89 (259)
T ss_pred             cCCCCEEEECC
Confidence            25678888874

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=82.16  E-value=7.2  Score=30.05  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          151 GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       151 G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      |.|..+..+|+. |++|+++|.++.-.+.+++.    +--.++..+-.+  +.    +.+.+......+|+||-...-
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~~~~~~~~~~--~~----~~i~~~~~~~~~d~vid~~g~   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GADHVIDYSDDD--FV----EQIRELTGGRGVDVVIDCVGS   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TESEEEETTTSS--HH----HHHHHHTTTSSEEEEEESSSS
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cccccccccccc--cc----cccccccccccceEEEEecCc
Confidence            578899999887 89999999999999998865    211222222221  11    122221344579999987663

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK07102 short chain dehydrogenase; Provisional

Probab=82.12  E-value=10  Score=32.57  Aligned_cols=77  Identities=13%  Similarity=0.173  Sum_probs=47.2

Q ss_pred             CEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++|+=.|+ +|.++..+    ++.|.+|+.++.+++..+...+....  .+++.++.+|..+..-   ..++++.  -..
T Consensus         2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~--~~~   75 (243)
T PRK07102          2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTAS---HAAFLDS--LPA   75 (243)
T ss_pred             cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHH---HHHHHHH--Hhh
Confidence            36777774 45555544    44588999999998766655444332  2478899999887532   1222221  112


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      .+|.+|.|.
T Consensus        76 ~~d~vv~~a   84 (243)
T PRK07102         76 LPDIVLIAV   84 (243)
T ss_pred             cCCEEEECC
Confidence            458888764

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=82.07  E-value=3.1  Score=42.00  Aligned_cols=68  Identities=18%  Similarity=0.343  Sum_probs=45.1

Q ss_pred             CEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ++|+=+|||  ..+..+    .+.+.+++.+|.|++.++.+++.     +..++.||+.+...       +++ ..-...
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~-------L~~-agi~~A  465 (621)
T PRK03562        401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDL-------LES-AGAAKA  465 (621)
T ss_pred             CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHH-------HHh-cCCCcC
Confidence            467766665  333333    33478999999999999988753     57899999988643       221 233456


Q ss_pred             eEEEEcC
Q 023240          219 AKVVANI  225 (285)
Q Consensus       219 D~Vv~n~  225 (285)
                      +.+|.-.
T Consensus       466 ~~vvv~~  472 (621)
T PRK03562        466 EVLINAI  472 (621)
T ss_pred             CEEEEEe
Confidence            6666543

>PRK05599 hypothetical protein; Provisional

Probab=82.03  E-value=12  Score=32.48  Aligned_cols=80  Identities=11%  Similarity=0.149  Sum_probs=50.1

Q ss_pred             EEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ++|=.|++.|.   ++..++ .|.+|+.++.+++.++.+.+.++..+  .+.++..|+.+..-.....+.+.  ...+..
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~i   78 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ--ELAGEI   78 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH--HhcCCC
Confidence            45666665443   233344 38899999999888877766665433  47788899887653333333332  223568


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |++|.|.-
T Consensus        79 d~lv~nag   86 (246)
T PRK05599         79 SLAVVAFG   86 (246)
T ss_pred             CEEEEecC
Confidence            99988743

>PRK06180 short chain dehydrogenase; Provisional

Probab=81.94  E-value=11  Score=33.33  Aligned_cols=81  Identities=16%  Similarity=0.083  Sum_probs=48.7

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +++||=.|++.|.   ++..+++.|.+|++++.+++.++......  .+++..+.+|+.+..-....++-+.  ...+.+
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~--~~~~~~   79 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAE--ATFGPI   79 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHH--HHhCCC
Confidence            4678888874432   23344455889999999987765544332  2368888889877542222222111  122457


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |+||.|..
T Consensus        80 d~vv~~ag   87 (277)
T PRK06180         80 DVLVNNAG   87 (277)
T ss_pred             CEEEECCC
Confidence            99988743

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=81.84  E-value=13  Score=32.89  Aligned_cols=81  Identities=17%  Similarity=0.229  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh-hcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER-RKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~-~~~~~  216 (285)
                      +++.++==|+.+|.   .+..+++.|.+|+.+.+..+.++.++..+.. +.+..+..|..+..--   ...++. ...-+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~---~~~i~~~~~~~g   80 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAV---EAAIEALPEEFG   80 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHH---HHHHHHHHHhhC
Confidence            34567776766665   4566777799999999999999998888765 5688888888876321   112221 13446


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|-|-
T Consensus        81 ~iDiLvNNA   89 (246)
T COG4221          81 RIDILVNNA   89 (246)
T ss_pred             cccEEEecC
Confidence            789999983

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.80  E-value=0.76  Score=38.27  Aligned_cols=59  Identities=17%  Similarity=0.242  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      +.++..++.......+..|||+|.|.-.++..|...   ...|.-.|-+++.++..++....
T Consensus        15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~   76 (201)
T KOG3201|consen   15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS   76 (201)
T ss_pred             HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence            444455555555556789999999966665555433   46899999999999888776543

>TIGR02415 23BDH acetoin reductases

Probab=81.63  E-value=15  Score=31.64  Aligned_cols=80  Identities=11%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             EEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ++|=.|+ +|.++..+    ++.|.+|+.++.++...+...+.+... .++.++.+|+.+.......++.+.  ...+..
T Consensus         2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~~~i   78 (254)
T TIGR02415         2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAA--EKFGGF   78 (254)
T ss_pred             EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcCCC
Confidence            4566674 45555544    445889999999877666555544433 368889999877542222222221  223467


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |.+|.|..
T Consensus        79 d~vi~~ag   86 (254)
T TIGR02415        79 DVMVNNAG   86 (254)
T ss_pred             CEEEECCC
Confidence            99988754

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK05875 short chain dehydrogenase; Provisional

Probab=81.61  E-value=13  Score=32.60  Aligned_cols=81  Identities=14%  Similarity=0.201  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhh-
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR-  212 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~-  212 (285)
                      +++++|=.|++ |.++..+    ++.|.+|++++.+++..+.....+...   .++.++.+|+.+..-..   .+++.. 
T Consensus         6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~   81 (276)
T PRK05875          6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVA---RAVDAAT   81 (276)
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHH---HHHHHHH
Confidence            35788988854 4444444    445889999999877665554444322   36788889987653221   122110 


Q ss_pred             cCCCCceEEEEcC
Q 023240          213 KSSSGFAKVVANI  225 (285)
Q Consensus       213 ~~~~~~D~Vv~n~  225 (285)
                      ...+..|.+|.|.
T Consensus        82 ~~~~~~d~li~~a   94 (276)
T PRK05875         82 AWHGRLHGVVHCA   94 (276)
T ss_pred             HHcCCCCEEEECC
Confidence            1234678988764

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=81.58  E-value=14  Score=33.65  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++|=.|++.|.   ++..+++.| .+|+.+..+++..+.+.+.+... .++.++..|+.+..-....++.+.  ...+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~   80 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFR--ESGR   80 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence            4577777765433   334455568 89999999887776665555422 367788888877643332333222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        81 ~iD~lI~nA   89 (314)
T TIGR01289        81 PLDALVCNA   89 (314)
T ss_pred             CCCEEEECC
Confidence            689999884

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08703 short chain dehydrogenase; Provisional

Probab=81.09  E-value=15  Score=31.50  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccc--hhhhhhHHhhh
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI--RSHMLSLFERR  212 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~--~~~~~d~~~~~  212 (285)
                      ++++||=.|+ +|.++..    +++.|.+|+.++.+++..+.....+...  ..+.++..|..+...  .....+.+.. 
T Consensus         5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~-   82 (239)
T PRK08703          5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE-   82 (239)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH-
Confidence            4678999995 4444444    4445889999999988776665554332  246677777754321  1111222211 


Q ss_pred             cCCCCceEEEEcC
Q 023240          213 KSSSGFAKVVANI  225 (285)
Q Consensus       213 ~~~~~~D~Vv~n~  225 (285)
                      ...+..|.||.|.
T Consensus        83 ~~~~~id~vi~~a   95 (239)
T PRK08703         83 ATQGKLDGIVHCA   95 (239)
T ss_pred             HhCCCCCEEEEec
Confidence            1114678888763

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=80.93  E-value=12  Score=32.57  Aligned_cols=81  Identities=19%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|+. |.++..    +++.|++|++++.+..  +...+.+... .++..+..|+.+..-....++-+.  ...
T Consensus         9 ~~k~~lItG~~-~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   83 (253)
T PRK08993          9 EGKVAVVTGCD-TGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAV--AEF   83 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence            46788888864 444444    4445889999987642  1222222222 367788888876432222222221  223


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus        84 ~~~D~li~~Ag   94 (253)
T PRK08993         84 GHIDILVNNAG   94 (253)
T ss_pred             CCCCEEEECCC
Confidence            56899998753

>PRK08324 short chain dehydrogenase; Validated

Probab=80.78  E-value=11  Score=38.47  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++ |.++.    .+++.|.+|+.+|++++..+.+...+...+++.++.+|+.+..-....++-+.  ...+
T Consensus       421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~--~~~g  497 (681)
T PRK08324        421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAA--LAFG  497 (681)
T ss_pred             CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHH--HHcC
Confidence            45788988853 33333    34445889999999998877766655433478888899876532222121111  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|+||.|.-
T Consensus       498 ~iDvvI~~AG  507 (681)
T PRK08324        498 GVDIVVSNAG  507 (681)
T ss_pred             CCCEEEECCC
Confidence            6899998754

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=80.78  E-value=4.8  Score=36.75  Aligned_cols=49  Identities=20%  Similarity=0.312  Sum_probs=40.7

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      ++...+.+|.-||+|.-.....+++...+|..||+|+.-++.-+-+++.
T Consensus        59 m~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          59 MQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             HhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHH
Confidence            4455789999999998878888888889999999999998887766553

>PRK09291 short chain dehydrogenase; Provisional

Probab=80.74  E-value=12  Score=32.42  Aligned_cols=74  Identities=19%  Similarity=0.147  Sum_probs=46.3

Q ss_pred             CEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++||=.|++ |.++..    +++.|.+|+++..++...+......... .++.++.+|+.+..-      +..  .....
T Consensus         3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~--~~~~~   73 (257)
T PRK09291          3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAID------RAQ--AAEWD   73 (257)
T ss_pred             CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHH------HHH--HhcCC
Confidence            468878864 444443    4445889999999877666555544333 368888999877431      111  11236


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|+||.|.
T Consensus        74 id~vi~~a   81 (257)
T PRK09291         74 VDVLLNNA   81 (257)
T ss_pred             CCEEEECC
Confidence            79999873

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=80.73  E-value=2.7  Score=36.09  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=29.0

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCC
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKD  172 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~  172 (285)
                      ...++++.+|+|+-.|.|++|..++.. +  +.|++.=.+
T Consensus        43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~   82 (238)
T COG4798          43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA   82 (238)
T ss_pred             EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence            344568899999999999999999876 2  477776543

>PRK06198 short chain dehydrogenase; Provisional

Probab=80.42  E-value=12  Score=32.37  Aligned_cols=82  Identities=11%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCE-EEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGAT-VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~-V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++ |.++..++    +.|.+ |+.++.+++........+... .++.++..|+.+.......++.+.  ..
T Consensus         5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   81 (260)
T PRK06198          5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD--EA   81 (260)
T ss_pred             CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HH
Confidence            46788888853 44555444    44777 999999876655444444322 367788889877543222222221  12


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|.+|.+.
T Consensus        82 ~g~id~li~~a   92 (260)
T PRK06198         82 FGRLDALVNAA   92 (260)
T ss_pred             hCCCCEEEECC
Confidence            24578988874

>PRK07806 short chain dehydrogenase; Provisional

Probab=80.40  E-value=16  Score=31.34  Aligned_cols=83  Identities=14%  Similarity=0.188  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCH-HHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~-~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +++++|=.|+ +|.++..+    ++.|.+|+++..+. ...+.+...++.. .++.++.+|+.+..-....++.+.  ..
T Consensus         5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   81 (248)
T PRK07806          5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAR--EE   81 (248)
T ss_pred             CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence            4578998885 34444444    44588999988764 3333333333322 367888999877542222222111  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|.+|.|..
T Consensus        82 ~~~~d~vi~~ag   93 (248)
T PRK07806         82 FGGLDALVLNAS   93 (248)
T ss_pred             CCCCcEEEECCC
Confidence            246788888753

>PRK08278 short chain dehydrogenase; Provisional

Probab=80.39  E-value=12  Score=33.09  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHH-------HHHHHHHhhcC-CCeEEEEcccccccchhhhhhHH
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-------VGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~-------v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+.+.       +..+.+.+... .++.++.+|+.+..-....++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            45688888875433   333445568899999986532       23333333322 37888899987764322222222


Q ss_pred             hhhcCCCCceEEEEcCC
Q 023240          210 ERRKSSSGFAKVVANIP  226 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P  226 (285)
                      .  ...+..|.+|.|..
T Consensus        85 ~--~~~g~id~li~~ag   99 (273)
T PRK08278         85 V--ERFGGIDICVNNAS   99 (273)
T ss_pred             H--HHhCCCCEEEECCC
Confidence            1  12246899988744

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.20  E-value=15  Score=31.89  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCC------------HHHHHHHHHHhhcC-CCeEEEEcccccccch
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~------------~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~  202 (285)
                      .+++||=.|++    .|. ++..+++.|++|+.++.+            +.... +...+... .++.++..|+.+..-.
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~   82 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPYAP   82 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHHHH
Confidence            35689999974    443 344455568899999876            22222 22223222 3688899998775432


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      ...++.+.  ...+..|.||.|.
T Consensus        83 ~~~~~~~~--~~~g~id~vi~~a  103 (256)
T PRK12748         83 NRVFYAVS--ERLGDPSILINNA  103 (256)
T ss_pred             HHHHHHHH--HhCCCCCEEEECC
Confidence            22222222  1235689888875

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.15  E-value=9.5  Score=35.14  Aligned_cols=87  Identities=21%  Similarity=0.332  Sum_probs=59.3

Q ss_pred             CCEEEEEcC--cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          142 GDIVLEIGP--GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       142 ~~~VLDiGc--G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +..++=-|+  |.|. .+..||.+|++|+-.-.+.+..+.+++.+...   .++.+++.|..++.---...+.++  ...
T Consensus        35 ~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~--~~~  112 (314)
T KOG1208|consen   35 GKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFK--KKE  112 (314)
T ss_pred             CcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHH--hcC
Confidence            456666664  5565 45667778999999999998888887777642   378889999988754333344443  245


Q ss_pred             CCceEEEEc-----CCCCCc
Q 023240          216 SGFAKVVAN-----IPFNIS  230 (285)
Q Consensus       216 ~~~D~Vv~n-----~P~~~~  230 (285)
                      .+.|+.|.|     +|+...
T Consensus       113 ~~ldvLInNAGV~~~~~~~t  132 (314)
T KOG1208|consen  113 GPLDVLINNAGVMAPPFSLT  132 (314)
T ss_pred             CCccEEEeCcccccCCcccC
Confidence            667888876     566433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
2h1r_A	299	Crystal Structure Of A Dimethyladenosine Transferas		3e-14
1zq9_A	285	Crystal Structure Of Human Dimethyladenosine Transf		3e-13
3fuu_A	271	T. Thermophilus 16s Rrna A1518 And A1519 Methyltran		2e-12
3uzu_A	279	The Structure Of The Ribosomal Rna Small Subunit Me		3e-12
3fut_A	271	Apo-Form Of T. Thermophilus 16s Rrna A1518 And A151		3e-12
3tqs_A	255	Structure Of The Dimethyladenosine Transferase (Ksg		8e-12
3ftc_A	249	Crystal Structure Of A. Aeolicus Ksga At 1.72-Angst		6e-11
3r9x_B	248	Crystal Structure Of Era In Complex With Mggdpnp, N		6e-11
3grr_A	295	Crystal Structure Of The Complex Between S-Adenosyl		2e-10
2erc_A	244	Crystal Structure Of Ermc' A Rrna-Methyl Transferas		1e-08
3tpz_A	273	2.1 Angstrom Crystal Structure Of The L114p Mutant		2e-08
1yub_A	245	Solution Structure Of An Rrna Methyltransferase (Er		5e-08
3fyc_A	265	Crystal Structure Of Dim1 From The Thermophilic Arc		2e-07
3fyd_A	263	Crystal Structure Of Dim1 From The Thermophilic Arc		3e-07
1qyr_A	252	2.1 Angstrom Crystal Structure Of Ksga: A Universal		4e-06

>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum Length = 299

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 16/143 (11%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
           GQH + N  I D++  AA ++  DIVLEIG GTG+LT  LL     V+ I+ D  M+  V
Sbjct: 21  GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEV 80
Query: 180 RER--FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
           ++R  +   + L+V + D +K        ++F +      F    ANIP+ IS+ +I +L
Sbjct: 81  KKRCLYEGYNNLEVYEGDAIK--------TVFPK------FDVCTANIPYKISSPLIFKL 126
Query: 238 LPMGDIFSEVVLLLQEETALRLV 260
           +    +F   VL+ Q+E A R++
Sbjct: 127 ISHRPLFKCAVLMFQKEFAERML 149

>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase Length = 285

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
           +GQH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +V  
Sbjct: 6   IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAE 65
Query: 179 VRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           + +R        +L+VL  D +K  +                F   VAN+P+ IS+  + 
Sbjct: 66  LHKRVQGTPVASKLQVLVGDVLKTDL--------------PFFDTCVANLPYQISSPFVF 111
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV 260
           +LL     F   +L+ Q E ALRLV
Sbjct: 112 KLLLHRPFFRCAILMFQREFALRLV 136

>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With Adenosine In Space Group P212121 Length = 271

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           L   G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL AGA V 
Sbjct: 14  LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
           AIEKD  +  ++ E  + +    V Q+             L+   +   G + +VAN+P+
Sbjct: 73  AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
           +I+T ++ +LL  G  F+ +V L+Q+E A R+
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERM 151

>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit Methyltransferase A From Burkholderia Pseudomallei Length = 279

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV----LLNAGATV 166
           +G F RK  GQ+++++  + D + AA   + G+ ++EIGPG G+LT      L   G+ +
Sbjct: 12  QGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPL 71
Query: 167 LAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
            A+E D+ ++G + +RF  + +L     L  DF               R       +++ 
Sbjct: 72  HAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSI-----------ARPGDEPSLRIIG 120
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRT 266
           N+P+NIS+ ++  L+    +  +   +LQ E   R+V EP  + 
Sbjct: 121 NLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKA 164

>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 Length = 271

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           L   G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL AGA V 
Sbjct: 14  LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
           AIEKD  +  ++ E  + +    V Q+             L+   +   G + +VAN+P+
Sbjct: 73  AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
           +I+T ++ +LL  G  F+ +V L+Q+E A R
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAER 150

>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From Coxiella Burnetii Length = 255

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ +
Sbjct: 4   RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           V  +++++     + + Q D ++          F   K+     +VV N+P+NIST ++ 
Sbjct: 64  VAFLQKKYNQQKNITIYQNDALQFD--------FSSVKTDKPL-RVVGNLPYNISTPLLF 114
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
            L        +    LQ+E   R+
Sbjct: 115 HLFSQIHCIEDXHFXLQKEVVRRI 138

>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom Resolution Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 24/150 (16%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
           +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ 
Sbjct: 6   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 65
Query: 175 MVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
           MV    E   SI  ++L+V+ ED   F  C +   +              KVV N+P+N+
Sbjct: 66  MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 107
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRL 259
           ++ +I+  +   D     V ++Q+E A +L
Sbjct: 108 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL 137

>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp, Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga Length = 248

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 24/150 (16%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
           +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ 
Sbjct: 5   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 64
Query: 175 MVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
           MV    E   SI  ++L+V+ ED   F  C +   +              KVV N+P+N+
Sbjct: 65  MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 106
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRL 259
           ++ +I+  +   D     V ++Q+E A +L
Sbjct: 107 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL 136

>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Homocysteine And Methanocaldococcus Jannaschi Dim1. Length = 295

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ 
Sbjct: 24  PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS 83
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +     +     + ++++  D +K  +            +   F KVVAN+P+ IS+ + 
Sbjct: 84  LEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPIT 131
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV 260
            +L+  G  F   VL+ Q E A R+V
Sbjct: 132 FKLIKRG--FDLAVLMYQYEFAKRMV 155

>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase Length = 244

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
           D++     + E D + EIG G G  T  L+     V AIE D  +      +    D  +
Sbjct: 20  DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQ 79
Query: 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
           VL +D ++          F+  K+ S   K+  NIP+NISTD+I++++    I  E+ L+
Sbjct: 80  VLNKDILQ----------FKFPKNQS--YKIFGNIPYNISTDIIRKIV-FDSIADEIYLI 126
Query: 251 LQEETALRLV 260
           ++   A RL+
Sbjct: 127 VEYGFAKRLL 136

>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E. Coli Ksga Length = 273

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
           +G   RK  GQ+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE
Sbjct: 7   QGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIE 66
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
            D+ +   ++       +L + Q+D       +   +  E  +      +V  N P+NIS
Sbjct: 67  LDRDLAARLQTHPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNPPYNIS 119
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
           T ++  L    D  +++  +LQ+E   RLV
Sbjct: 120 TPLMFHLFSYTDAIADMHFMLQKEVVNRLV 149

>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam) That Confers Macrolide-Lincosamide-Streptogramin Antibiotic Resistance, Nmr, Minimized Average Structure Length = 245

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
            Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H+  L 
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLS 67
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            E+     ++ ++ +D ++          F  ++      K+V NIP+++ST +IK+++ 
Sbjct: 68  SEKLKLNTRVTLIHQDILQFQ--------FPNKQR----YKIVGNIPYHLSTQIIKKVV- 114
Query: 240 MGDIFSEVVLLLQE 253
                S++ L+++E
Sbjct: 115 FESRASDIYLIVEE 128

>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 265

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
            Q ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +    
Sbjct: 2   AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYA 61
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+ 
Sbjct: 62  NKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIK 109
Query: 240 MGDIFSEVVLLLQEETALRLV 260
            G  F   VL+ Q E A R+V
Sbjct: 110 RG--FDLAVLMYQYEFAKRMV 128

>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 263

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +     
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYAN 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
           +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+  
Sbjct: 61  KLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIKR 108
Query: 241 GDIFSEVVLLLQEETALRLV 260
           G  F   VL+ Q E A R+V
Sbjct: 109 G--FDLAVLMYQYEFAKRMV 126

>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase Length = 252

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D       +   +  E  +      +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSY 113
Query: 241 GDIFSEVVLLLQEETALRLV 260
            D  +++  +LQ+E   RLV
Sbjct: 114 TDAIADMHFMLQKEVVNRLV 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	5e-39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	4e-38
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	4e-37
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	6e-37
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	1e-36
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	5e-36
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	4e-34
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	1e-31
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	5e-31
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	1e-29
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	5e-25
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-07
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	8e-07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	8e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	8e-07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	5e-06
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	6e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	6e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	7e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	1e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	4e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	5e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	6e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	7e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	7e-05
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	8e-05
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-04
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	1e-04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	2e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-04
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	2e-04
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	3e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	4e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	4e-04
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	5e-04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	5e-04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	5e-04
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	5e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	7e-04
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	8e-04

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299

 Score =  137 bits (347), Expect = 5e-39
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 19/175 (10%)

Query: 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLA 168
           +S GR      GQH + N  I D++  AA ++  DIVLEIG GTG+LT  LL     V+ 
Sbjct: 10  HSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVIT 69

Query: 169 IEKDQHMVGLVRERF--ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
           I+ D  M+  V++R      + L+V + D +K                   F    ANIP
Sbjct: 70  IDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK--------------FDVCTANIP 115

Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
           + IS+ +I +L+    +F   VL+ Q+E A R++       S Y  + I V  + 
Sbjct: 116 YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG--DSNYSRLTINVKLFC 168

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285

 Score =  134 bits (340), Expect = 4e-38
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
              +GQH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +
Sbjct: 3   NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRL 62

Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
           V  + +R        +L+VL  D +K  +                F   VAN+P+ IS+ 
Sbjct: 63  VAELHKRVQGTPVASKLQVLVGDVLKTDLPF--------------FDTCVANLPYQISSP 108

Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
            + +LL     F   +L+ Q E ALRLV +P      Y  ++I     +
Sbjct: 109 FVFKLLLHRPFFRCAILMFQREFALRLVAKPG--DKLYCRLSINTQLLA 155

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295

 Score =  132 bits (334), Expect = 4e-37
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 17/178 (9%)

Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
           + +    S    P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L   
Sbjct: 12  SGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN 71

Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
              V  IE D+ +     +     + ++++  D +K  +            +   F KVV
Sbjct: 72  AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVV 119

Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
           AN+P+ IS+ +  +L+  G  F   VL+ Q E A R+V      T +Y  +++ V   
Sbjct: 120 ANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMVAAAG--TKDYGRLSVAVQSR 173

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244

 Score =  130 bits (330), Expect = 6e-37
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ +    D++     + E D + EIG G G  T  L+     V AIE D  
Sbjct: 4   KNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +      +    D  +VL +D ++                 +   K+  NIP+NISTD+I
Sbjct: 64  LCKTTENKLVDHDNFQVLNKDILQFKF------------PKNQSYKIFGNIPYNISTDII 111

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           ++++    I  E+ L+++   A RL+      +  R + +F+   
Sbjct: 112 RKIV-FDSIADEIYLIVEYGFAKRLL------NTKRSLALFLMAE 149

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245

 Score =  129 bits (328), Expect = 1e-36
 Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 19/165 (11%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  L  E+     ++ ++ +D ++                +    K+V NIP+++ST +I
Sbjct: 63  LFNLSSEKLKLNTRVTLIHQDILQFQF------------PNKQRYKIVGNIPYHLSTQII 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           K+++      S++ L+++E    R          +R + + ++  
Sbjct: 111 KKVV-FESRASDIYLIVEEGFYKRT------LDIHRTLGLLLHTQ 148

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} Length = 255

 Score =  128 bits (324), Expect = 5e-36
 Identities = 40/166 (24%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
            RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ 
Sbjct: 3   MRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +V  +++++     + + Q D ++        S+   +       +VV N+P+NIST ++
Sbjct: 63  LVAFLQKKYNQQKNITIYQNDALQFDFS----SVKTDKP-----LRVVGNLPYNISTPLL 113

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
             L        ++  +LQ+E   R+  E    + +Y  +++   ++
Sbjct: 114 FHLFSQIHCIEDMHFMLQKEVVRRITAEVG--SHDYGRLSVMAQYF 157

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Length = 279

 Score =  124 bits (313), Expect = 4e-34
 Identities = 43/171 (25%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--- 160
              +   +G F RK  GQ+++++  + D + AA   + G+ ++EIGPG G+LT  ++   
Sbjct: 5   MSNSRQHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARL 64

Query: 161 -NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
              G+ + A+E D+ ++G + +RF   + L++   D +     S      E         
Sbjct: 65  ATPGSPLHAVELDRDLIGRLEQRFG--ELLELHAGDALTFDFGSIARPGDEPS------L 116

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEY 269
           +++ N+P+NIS+ ++  L+    +  +   +LQ E   R+V EP   T  +
Sbjct: 117 RIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPG--TKAF 165

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Length = 252

 Score =  116 bits (294), Expect = 1e-31
 Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 10/160 (6%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D +  +       + +         +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQPL-------RVFGNLPYNISTPLMFHLFSY 113

Query: 241 GDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
            D  +++  +LQ+E   RLV  P+  +  Y  +++   +Y
Sbjct: 114 TDAIADMHFMLQKEVVNRLVAGPN--SKAYGRLSVMAQYY 151

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* Length = 249

 Score =  115 bits (290), Expect = 5e-31
 Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 18/166 (10%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQ 173
            +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      +  IE D+
Sbjct: 5   LKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDR 64

Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
            MV  ++      ++L+V+ ED  K        SL +         KVV N+P+N+++ +
Sbjct: 65  EMVENLKSIGD--ERLEVINEDASKFPFC----SLGKE-------LKVVGNLPYNVASLI 111

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           I+  +   D     V ++Q+E A +L        +   +++FV  +
Sbjct: 112 IENTVYNKDCVPLAVFMVQKEVAEKLQG----KKDTGWLSVFVRTF 153

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Length = 271

 Score =  112 bits (282), Expect = 1e-29
 Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 18/180 (10%)

Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
            +++AL  + G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL 
Sbjct: 8   QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLE 66

Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
           AGA V AIEKD  +  ++ E  + +  ++++ +D +          + +          +
Sbjct: 67  AGAEVTAIEKDLRLRPVLEETLSGLP-VRLVFQDALLYPWE----EVPQGS-------LL 114

Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
           VAN+P++I+T ++ +LL  G   + +V L+Q+E A R+   P   T  Y  + + V  ++
Sbjct: 115 VANLPYHIATPLVTRLLKTGRF-ARLVFLVQKEVAERMTARPK--TPAYGVLTLRVAHHA 171

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Length = 353

 Score =  101 bits (253), Expect = 5e-25
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 25/189 (13%)

Query: 115 PRKSLGQHYMLNSEINDQ------LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TV 166
            +   G  Y+ N  + ++      L       E   VL++ PG G  + +  N       
Sbjct: 26  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 85

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS---LFERRKSSSGFA---- 219
             +EK   +   +  +F     L++L+ D       S+++    +F     SS       
Sbjct: 86  SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 144

Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
             VAN+    S  +I Q L               +++L +   TA +L+           
Sbjct: 145 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 203

Query: 272 INIFVNFYS 280
            ++    ++
Sbjct: 204 CSVVREAFT 212

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
           + +      +    VLE G GTG+LTN LL AG TV  IE  + M  + +E+     +  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFS 92

Query: 191 VLQEDF 196
           + + DF
Sbjct: 93  ITEGDF 98

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
            I + +     + +G ++ +IG GTG  +  L N G  V A+E    M       
Sbjct: 21  RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH 75

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 10/56 (17%), Positives = 24/56 (42%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
           ++        +  ++++ G G G     LL     +  I+ +   +  V+E+F S+
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSV 62

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
            +A     E  + LE+G GTG +   L+  G   +A++ D  M+ + R++ A +D
Sbjct: 31  ASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVD 85

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
           + L      Q G+ +L++G GTG LT  +  +GA VL  +    M+   R+ +  + 
Sbjct: 47  EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLH 103

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKV 191
             A   + D+ +++G GTG +T  L      V AI+++   +        R    D + +
Sbjct: 27  CLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL 86

Query: 192 LQEDF 196
           ++ D 
Sbjct: 87  MEGDA 91

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
            L    A     ++L++G GTG  T  L + G  +  +E    +V L R+   S+     
Sbjct: 32  VLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVT---F 88

Query: 192 LQEDF 196
                
Sbjct: 89  HHGTI 93

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           L  + +       LEIG   G+ T  L      +  I+     +G   +R      +   
Sbjct: 43  LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWA 102

Query: 193 QEDF 196
             D 
Sbjct: 103 ATDI 106

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 94  ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
           A +   + +  +       R P   +      + E+   L  +  +     VLE G G G
Sbjct: 3   AMNHSRESYDRLARELGGYRHPWARVLSGP--DPELTFDLWLSRLLTPQTRVLEAGCGHG 60

Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
                     A   A +    ++ L R      D
Sbjct: 61  PDAARFGPQAARWAAYDFSPELLKLARANAPHAD 94

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           L    A      VLE+  GTG  T  L      V A++    M+          D ++  
Sbjct: 38  LERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGL--DNVEFR 95

Query: 193 QEDF 196
           Q+D 
Sbjct: 96  QQDL 99

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLK 190
           ++ A+   E   +L++G GTG L+  L+     AT   ++  + M+ + + RF    ++K
Sbjct: 36  VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVK 95

Query: 191 VLQEDFVK 198
            ++ D+ K
Sbjct: 96  YIEADYSK 103

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 24/155 (15%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATVLAIEKDQHMVGLVRERFASI---- 186
           LA+  A      + ++G G G+    +      A V   E+ Q M    R          
Sbjct: 28  LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA 87

Query: 187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ-------- 236
              +++VL+ D     +     +  E       F  V+ N P+N + D            
Sbjct: 88  FSARIEVLEAD-----VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAH 142

Query: 237 ---LLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268
                   D       ++     L L+      +E
Sbjct: 143 AMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAE 177

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           +LE+G   G  T+ L      +  +E  +  +   + R    D +  +   F
Sbjct: 46  LLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRF 95

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
                +  G  +LE+G G G     +L AG  V A +    +      R  
Sbjct: 36  KFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLG 86

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 99  DDYHATIKALNSKGRFPRKSLG--------QHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
             +H     L  +G    +  G           +  S +     AA A + G+++ +IG 
Sbjct: 5   HHHHHHSSGLVPRGSHMSQVPGRPESAFAHDGQITKSPMRALTLAALAPRRGELLWDIGG 64

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKVLQEDF 196
           G+GS++     AG   + IE     +  +++    +    +++ +Q   
Sbjct: 65  GSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA 113

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERFAS 185
           +   L        G  VLE G G G+ T +L   N  A + +I+     +   RE    
Sbjct: 25  LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           +E   VL+IG  +G+L   +   G  V  IE         +E+   +    +   D 
Sbjct: 31  KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDM 87

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
             +   A  +    VL+IG G G             + ++  + MV +    
Sbjct: 11  GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF 62

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
            A    G  +L+ G G G +   L   G  VL  + D  ++   ++ F    
Sbjct: 41  DAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEAR 92

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
           +  A   ++ + VL++G G G L   L + G   + ++ D+ +V   R   A
Sbjct: 44  ILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGA 95

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 118 SLGQHYMLNSEINDQLAAA--AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           +     M +S     +       V++   VL++G G G  T  L   G   + ++  + M
Sbjct: 28  NQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVM 87

Query: 176 VGLVRERFASIDQLKVLQED 195
           +   +ER      L  ++ D
Sbjct: 88  IQKGKER-GEGPDLSFIKGD 106

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195
              + +G  VLEIG G G  T ++      V+++E ++ M     +  +  + +K++  D
Sbjct: 65  ELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGD 124

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 10/140 (7%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
            +A    + +   VLE G G+G+L  VL      V   E  +      ++        K 
Sbjct: 82  YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-----KF 136

Query: 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI--FSEVVL 249
                VK        +        + F  V    P++    V K L+    +        
Sbjct: 137 NLGKNVKFFNVDFKDAEVPEGIFHAAFVDVRE--PWHYLEKVHKSLMEGAPVGFLLPTAN 194

Query: 250 LLQEET-ALRLVEPSLRTSE 268
            + +   ++     +L   E
Sbjct: 195 QVIKLLESIENYFGNLEVVE 214

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 111 KGRFPRKSLGQHYMLNSEIN--DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATV 166
           +   P ++L   Y     +      AA    + G+  + IG G   LT +LL    G  V
Sbjct: 90  ESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRV 149

Query: 167 LAIEKDQHMVGLVRERFAS--IDQLKVLQED 195
             +E +  +  L R+      +D + V+  D
Sbjct: 150 NVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQE 194
           A         VLE+  G G LT   L+ G  V A+E    ++   R+R A        + 
Sbjct: 76  ATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRC 135

Query: 195 DFVKCHIRSHMLSLFER 211
             V+  + +   +L +R
Sbjct: 136 TLVQGDMSA--FALDKR 150

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN--VLLNAGATVLAIEKDQHMVGLVRE 181
           +    +     +A A +  + + +IG G+GS+    +      T +  E  +     +  
Sbjct: 8   LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67

Query: 182 RFAS--IDQLKVLQEDF 196
              +  +     +Q+  
Sbjct: 68  NAINLGVSDRIAVQQGA 84

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQ 188
            +L   AA++  + VL++  G G + N        V+A +  + ++ + R         Q
Sbjct: 27  AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 86

Query: 189 LKVLQED 195
           ++ +Q D
Sbjct: 87  VEYVQGD 93

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
              +     VLEIG G+G  T +L +    V ++E+ + +    R R  ++D
Sbjct: 72  LLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD 123

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198
           VL+IG G G    +    G   + ++ ++ M+     +        V++ D ++
Sbjct: 45  VLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIE 92

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-- 185
           +++     ++EG  VL++G G G     L         V AI+  + MV    E+     
Sbjct: 27  EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG 86

Query: 186 IDQLKVLQED 195
           +  ++VL+ +
Sbjct: 87  LKNVEVLKSE 96

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 5/49 (10%), Positives = 16/49 (32%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
                    +++   G G+ T  L      V+ ++  +  + +  +   
Sbjct: 51  ELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT 99

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185
           A  + +  IV++   G G+ T  L      V A +  +  +G   +R + 
Sbjct: 17  AEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSD 66

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERF--ASIDQLKVL 192
            A ++ G  +LE+G G+G    ++       V  IE+   +V   +     A +  + V+
Sbjct: 86  IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVI 145

Query: 193 QED 195
             D
Sbjct: 146 LGD 148

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           ++  D +L +G G  +L+  L   G   V +++    +V  ++  +A + QL+    D 
Sbjct: 40  LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV 98

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 137 AAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS 185
             + +   +++ G G G L  VL   L  G+    I+  + ++   RE F  
Sbjct: 18  WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID 187
             L A   ++      ++G G G+ T +L +      +  I+ D  M+    +R  + +
Sbjct: 23  RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN 81

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI--- 186
             L     ++ G  +L++G G+G +      + G T   I+         + R   +   
Sbjct: 26  ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS 85

Query: 187 DQLKVLQEDF 196
           +++  +  D 
Sbjct: 86  ERVHFIHNDA 95

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 9/47 (19%), Positives = 23/47 (48%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181
               + + D+V+++G G+G +T  +      V AI+     + + ++
Sbjct: 29  GKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQ 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.96
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.96
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.95
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.94
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.92
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.91
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.88
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.88
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	99.87
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.86
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.76
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.58
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.56
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.55
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.51
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.48
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.46
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.46
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.46
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.46
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.46
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.45
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.45
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.45
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.45
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.44
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.44
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.44
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.43
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.43
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.43
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.43
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.42
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.42
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.41
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.41
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.39
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.39
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.39
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.38
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.38
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.38
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.38
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.37
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.37
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.37
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.37
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.37
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.37
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.37
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.35
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.35
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.35
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.35
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.35
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.34
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.34
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.34
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.33
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.33
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.33
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.33
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.33
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.32
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.32
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.32
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.32
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.31
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.31
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.31
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.31
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.31
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.31
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.3
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.3
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.3
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.3
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.3
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.29
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.29
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.29
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.29
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.29
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.29
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.29
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.29
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.29
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.29
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.29
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.29
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.28
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.28
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.28
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.28
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.28
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.27
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.27
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.27
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.27
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.26
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.26
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.26
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.26
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.26
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.26
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.26
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.26
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.26
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.25
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.25
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.25
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.25
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.24
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.24
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.24
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.24
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.23
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.23
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.23
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.23
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.23
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.23
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.23
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.23
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.23
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.23
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.23
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.23
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.23
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.22
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.22
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.22
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.22
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.22
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.22
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.22
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.21
3lkd_A	542	Type I restriction-modification system methyltrans	99.21
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.21
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.21
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.21
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.21
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.2
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.2
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.2
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.2
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.19
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.19
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.19
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.19
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.18
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.18
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.18
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.18
3khk_A	544	Type I restriction-modification system methylation	99.18
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.18
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.18
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.18
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.17
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.17
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.17
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.17
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.17
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.17
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.17
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.16
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.15
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.15
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.14
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.14
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.14
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.14
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.13
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.13
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.13
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.13
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.12
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.12
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.12
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.12
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.12
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.11
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.11
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.11
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.11
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.11
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.1
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.1
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.1
3ocj_A	305	Putative exported protein; structural genomics, PS	99.1
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.09
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.09
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.09
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.09
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.09
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.08
3ufb_A	530	Type I restriction-modification system methyltran	99.08
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.08
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.07
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.07
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.07
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.06
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.06
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.06
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.06
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.05
2o07_A	304	Spermidine synthase; structural genomics, structur	99.05
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.05
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.05
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.04
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.04
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.04
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.04
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.03
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.03
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.03
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.02
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.02
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.01
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.0
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.0
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.0
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.99
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.98
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.97
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.96
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.96
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.96
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.95
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.95
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.95
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.93
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.92
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.92
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.9
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.89
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.88
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.87
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.87
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.87
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.86
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.85
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.85
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.84
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.84
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.82
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.81
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.77
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.75
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.74
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.74
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.74
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.73
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.72
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.72
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.7
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.7
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.7
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.69
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.68
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.67
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.67
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.66
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.65
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.63
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.63
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.61
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.55
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.54
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.42
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.39
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.36
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.34
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.34
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.32
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.29
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.23
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.22
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.2
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.18
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.11
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.07
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.06
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.04
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.0
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.95
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.92
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.91
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.76
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.69
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.67
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.54
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.38
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.34
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.3
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.27
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.18
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.16
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.04
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.01
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.0
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.97
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.93
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.76
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.71
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.72
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	95.53
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	95.26
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.16
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.04
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.01
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.95
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.67
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	94.62
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.46
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.45
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.45
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.44
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.39
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.35
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.31
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.27
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.21
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.18
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.13
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	94.11
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	94.07
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.07
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.01
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.0
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.83
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.81
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.81
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.76
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.62
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.59
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.55
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.52
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.51
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	93.42
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.42
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.37
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.33
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	93.3
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	93.24
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	93.14
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.11
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.06
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.05
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	93.04
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	93.04
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	93.03
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.03
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.0
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	92.96
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	92.92
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.91
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	92.9
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.89
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.88
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	92.88
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	92.86
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	92.85
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	92.81
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	92.8
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.73
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	92.69
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	92.63
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	92.62
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.61
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	92.57
3cxt_A	291	Dehydrogenase with different specificities; rossma	92.57
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.56
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.53
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	92.49
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.48
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.46
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	92.38
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	92.38
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.32
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.31
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.3
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.22
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	92.2
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	92.16
1xkq_A	280	Short-chain reductase family member (5D234); parra	92.1
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.1
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.09
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.08
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	92.03
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.97
3rih_A	293	Short chain dehydrogenase or reductase; structural	91.97
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	91.95
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	91.93
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	91.92
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	91.88
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	91.87
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	91.86
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	91.81
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	91.81
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	91.65
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	91.62
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	91.55
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	91.5
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	91.49
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	91.44
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	91.38
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	91.37
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.34
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	91.34
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	91.34
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.28
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	91.25
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	91.22
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	91.22
1xq1_A	266	Putative tropinone reducatse; structural genomics,	91.21
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	91.18
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	91.17
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	91.16
4dqx_A	277	Probable oxidoreductase protein; structural genomi	91.1
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.1
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	91.1
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.09
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	91.06
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	91.02
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	90.99
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	90.95
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	90.95
1xhl_A	297	Short-chain dehydrogenase/reductase family member	90.93
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	90.91
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.91
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	90.84
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	90.81
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.75
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	90.74
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.72
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	90.72
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	90.7
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	90.69
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	90.66
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	90.65
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	90.6
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	90.6
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	90.57
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.52
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	90.52
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.51
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	90.46
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	90.39
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	90.36
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	90.3
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.29
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	90.28
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	90.27
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	90.25
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.22
1spx_A	278	Short-chain reductase family member (5L265); paral	90.2
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	90.2
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	90.19
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.19
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	90.16
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	90.08
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	90.06
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	90.02
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	89.98
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	89.97
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	89.92
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	89.91
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	89.85
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	89.65
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	89.64
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	89.57
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	89.44
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	89.35
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	89.35
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.34
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	89.32
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	89.32
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	89.3
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	89.16
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	89.12
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	89.03
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	88.94
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	88.9
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.88
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	88.85
1id1_A	153	Putative potassium channel protein; RCK domain, E.	88.75
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	88.72
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	88.67
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	88.65
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	88.57
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.56
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	88.54
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	88.51
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	88.35
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	88.25
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	88.17
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	88.15

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.96  E-value=1e-28  Score=220.69  Aligned_cols=169  Identities=28%  Similarity=0.428  Sum_probs=155.4

Q ss_pred             hHHHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHH
Q 023240          101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR  180 (285)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~  180 (285)
                      ...+.+.+..+++.+++.+||||..++.+++.+++.+.+.++ +|||||||+|.+|..+++.+.+|+|+|+|+++++.++
T Consensus         7 ~~~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~   85 (271)
T 3fut_A            7 PQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLE   85 (271)
T ss_dssp             HHHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred             HHHHHHHHHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            455677888889999999999999999999999999999888 9999999999999999999999999999999999999


Q ss_pred             HHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhc
Q 023240          181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV  260 (285)
Q Consensus       181 ~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~  260 (285)
                      +++.. ++++++++|+.++++.           ....+|.||+|+||++.++++.+++.. ..+..+++++|+++++|++
T Consensus        86 ~~~~~-~~v~vi~~D~l~~~~~-----------~~~~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~QkEva~Rl~  152 (271)
T 3fut_A           86 ETLSG-LPVRLVFQDALLYPWE-----------EVPQGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQKEVAERMT  152 (271)
T ss_dssp             HHTTT-SSEEEEESCGGGSCGG-----------GSCTTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEHHHHHHHT
T ss_pred             HhcCC-CCEEEEECChhhCChh-----------hccCccEEEecCcccccHHHHHHHhcC-CCCCEEEEEeeeeeeeecc
Confidence            99863 5899999999998753           223589999999999999999999987 8889999999999999999


Q ss_pred             CCCCCCCCchhHHHHHHHhhcccc
Q 023240          261 EPSLRTSEYRPINIFVNFYSGQFC  284 (285)
Q Consensus       261 ~~~~~~~~y~~l~~~~~~f~~~~~  284 (285)
                       +.||++.|+++|+++|+||++.+
T Consensus       153 -A~pg~k~yg~lSv~~q~~~~~~~  175 (271)
T 3fut_A          153 -ARPKTPAYGVLTLRVAHHAVAER  175 (271)
T ss_dssp             -CCTTSTTCSHHHHHHHHHEEEEE
T ss_pred             -cCCCCCcccHHHHHHHHHeeEEE
Confidence             99999999999999999999854

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.96  E-value=1.3e-28  Score=218.29  Aligned_cols=161  Identities=25%  Similarity=0.494  Sum_probs=141.5

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~  193 (285)
                      .+++.|||||.+++.+++.+++.+.+.++.+|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...+++++++
T Consensus         2 ~~~k~~GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~   81 (255)
T 3tqs_A            2 PMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQ   81 (255)
T ss_dssp             -------CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CCCCcCCcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEE
Confidence            46778999999999999999999999999999999999999999999998999999999999999999987667999999


Q ss_pred             cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (285)
Q Consensus       194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~  273 (285)
                      +|+.++++.+.        ...+.+| ||+|+||++.++++.+++.....+..+++++|+++++|++ +.||++.|+++|
T Consensus        82 ~D~~~~~~~~~--------~~~~~~~-vv~NlPY~is~~il~~ll~~~~~~~~~~lm~QkEva~Rl~-a~pg~k~yg~ls  151 (255)
T 3tqs_A           82 NDALQFDFSSV--------KTDKPLR-VVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRIT-AEVGSHDYGRLS  151 (255)
T ss_dssp             SCTTTCCGGGS--------CCSSCEE-EEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEHHHHHHHT-CCTTSTTCSHHH
T ss_pred             cchHhCCHHHh--------ccCCCeE-EEecCCcccCHHHHHHHHhCCCChheEEEEEeHHHHHHhh-CCCCCCccchhh
Confidence            99999876431        1134577 9999999999999999998888889999999999999999 999999999999


Q ss_pred             HHHHHhhcccc
Q 023240          274 IFVNFYSGQFC  284 (285)
Q Consensus       274 ~~~~~f~~~~~  284 (285)
                      +++|+||++.+
T Consensus       152 v~~q~~~~~~~  162 (255)
T 3tqs_A          152 VMAQYFCDNTY  162 (255)
T ss_dssp             HHHHHHEEEEE
T ss_pred             heeeeeEEEEE
Confidence            99999999854

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.95  E-value=2.6e-27  Score=212.49  Aligned_cols=164  Identities=25%  Similarity=0.463  Sum_probs=142.6

Q ss_pred             CCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCE----EEEEeCCHHHHHHHHHHhhcCC
Q 023240          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASID  187 (285)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~----V~giD~~~~~v~~a~~~~~~~~  187 (285)
                      ++.+++.+||+|..++.+++.+++.+.+.++.+|||||||+|.+|..+++.+.+    |+|+|+|+.+++.++++.  .+
T Consensus        13 ~~~~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~   90 (279)
T 3uzu_A           13 GHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GE   90 (279)
T ss_dssp             -----CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GG
T ss_pred             CCCccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CC
Confidence            578889999999999999999999999999999999999999999999998766    999999999999999984  45


Q ss_pred             CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCC
Q 023240          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS  267 (285)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~  267 (285)
                      +++++++|+.++++.+...      ......+.||+|+||++.++++.+++.....+..+++++|+++++||+ +.||++
T Consensus        91 ~v~~i~~D~~~~~~~~~~~------~~~~~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~QkEva~Rl~-A~pg~k  163 (279)
T 3uzu_A           91 LLELHAGDALTFDFGSIAR------PGDEPSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMV-AEPGTK  163 (279)
T ss_dssp             GEEEEESCGGGCCGGGGSC------SSSSCCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEHHHHHHHT-CCTTST
T ss_pred             CcEEEECChhcCChhHhcc------cccCCceEEEEccCccccHHHHHHHHhccCCccEEEEEeeHHHHHHHh-CCCCCC
Confidence            8999999999998653210      001145789999999999999999998888899999999999999999 999999


Q ss_pred             CchhHHHHHHHhhcccc
Q 023240          268 EYRPINIFVNFYSGQFC  284 (285)
Q Consensus       268 ~y~~l~~~~~~f~~~~~  284 (285)
                      .|+++|+++|+||++.+
T Consensus       164 ~yg~lSv~~q~~~~~~~  180 (279)
T 3uzu_A          164 AFSRLSVMLQYRYVMDK  180 (279)
T ss_dssp             TCCHHHHHHHHHEEEEE
T ss_pred             cccHHHHHHhhheEEEE
Confidence            99999999999999854

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.94  E-value=1.3e-26  Score=209.32  Aligned_cols=165  Identities=28%  Similarity=0.421  Sum_probs=137.4

Q ss_pred             HHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh
Q 023240          105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (285)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~  184 (285)
                      ++...++++.+++.|||||.+++.+++.+++.+.+.++.+|||||||+|.+|..+++.+.+|+|||+|+.+++.+++++.
T Consensus        14 ~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~   93 (295)
T 3gru_A           14 LVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE   93 (295)
T ss_dssp             ----------------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH
T ss_pred             hchhHhcCCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc
Confidence            34455668899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCC
Q 023240          185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSL  264 (285)
Q Consensus       185 ~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~  264 (285)
                      ..++++++++|+.++++.            ...||.|++|+||++.++++.+++..+  +..+.+++|++.+.|++ +.|
T Consensus        94 ~~~~v~vi~gD~l~~~~~------------~~~fD~Iv~NlPy~is~pil~~lL~~~--~~~~~lm~Q~eva~Rl~-a~p  158 (295)
T 3gru_A           94 LYNNIEIIWGDALKVDLN------------KLDFNKVVANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMV-AAA  158 (295)
T ss_dssp             HCSSEEEEESCTTTSCGG------------GSCCSEEEEECCGGGHHHHHHHHHHHC--CSEEEEEEEHHHHHHHH-CCT
T ss_pred             cCCCeEEEECchhhCCcc------------cCCccEEEEeCcccccHHHHHHHHhcc--cceEEEeeecccccEEE-ecC
Confidence            667999999999998752            246899999999999999999888753  67788999999999999 999


Q ss_pred             CCCCchhHHHHHHHhhcccc
Q 023240          265 RTSEYRPINIFVNFYSGQFC  284 (285)
Q Consensus       265 ~~~~y~~l~~~~~~f~~~~~  284 (285)
                      +++.|+.+++++|+||++.+
T Consensus       159 g~k~yg~Lsv~~q~~~~~~~  178 (295)
T 3gru_A          159 GTKDYGRLSVAVQSRADVEI  178 (295)
T ss_dssp             TSTTCSHHHHHHHTTEEEEE
T ss_pred             CCcchhHHHHHHHhhccEEE
Confidence            99999999999999998754

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.92  E-value=7.4e-25  Score=193.52  Aligned_cols=156  Identities=29%  Similarity=0.417  Sum_probs=136.5

Q ss_pred             CCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCeE
Q 023240          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLK  190 (285)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v~  190 (285)
                      ++.+++.|||||.+++.+++.+++.+.+.++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++  ..++++
T Consensus         2 ~~~~~k~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~   79 (249)
T 3ftd_A            2 MVRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLE   79 (249)
T ss_dssp             ------CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEE
T ss_pred             CCCCCCcccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeE
Confidence            3567889999999999999999999999889999999999999999999985 8999999999999999988  346899


Q ss_pred             EEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCch
Q 023240          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYR  270 (285)
Q Consensus       191 ~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~  270 (285)
                      ++++|+.++++.+.          .+ ...|++|+||+..++++.+++..+..+..+.+++|+++++|++ +   ++.|+
T Consensus        80 ~i~~D~~~~~~~~~----------~~-~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Qkeva~Rl~-a---~k~yg  144 (249)
T 3ftd_A           80 VINEDASKFPFCSL----------GK-ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQ-G---KKDTG  144 (249)
T ss_dssp             EECSCTTTCCGGGS----------CS-SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEEHHHHHHHH-T---SSCCC
T ss_pred             EEEcchhhCChhHc----------cC-CcEEEEECchhccHHHHHHHHhcCCCCceEEEEEeHHHHHHhh-c---ccccc
Confidence            99999999886431          12 3589999999999999999999888899999999999999999 4   99999


Q ss_pred             hHHHHHHHhhcccc
Q 023240          271 PINIFVNFYSGQFC  284 (285)
Q Consensus       271 ~l~~~~~~f~~~~~  284 (285)
                      .+++++|+||++.+
T Consensus       145 ~lsv~~q~~~~~~~  158 (249)
T 3ftd_A          145 WLSVFVRTFYDVNY  158 (249)
T ss_dssp             HHHHHHHHHEEEEE
T ss_pred             HHHHHHHhHEEEEE
Confidence            99999999999754

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.91  E-value=1.9e-24  Score=191.26  Aligned_cols=154  Identities=23%  Similarity=0.385  Sum_probs=135.2

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCE--EEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc
Q 023240          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT--VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (285)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~--V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~  198 (285)
                      |||.+++.+++.+++.+.+.++.+|||||||+|.+|. ++. +.+  |+|+|+|+.|++.+++++...++++++++|+.+
T Consensus         1 QnfL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~   78 (252)
T 1qyr_A            1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             CCCcCCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence            6899999999999999999888999999999999999 654 567  999999999999999988655689999999999


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHHHHHHH
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF  278 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~~~~~~  278 (285)
                      +++.+. +++      .+..+.||+|+||++.++++.+++.....+..+++++|++++.||+ +.||++.|+.+++++|+
T Consensus        79 ~~~~~~-~~~------~~~~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~QkEva~Rl~-a~pG~k~yg~lsv~~q~  150 (252)
T 1qyr_A           79 FNFGEL-AEK------MGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQY  150 (252)
T ss_dssp             CCHHHH-HHH------HTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHH-CCTTSTTCSHHHHHHHH
T ss_pred             CCHHHh-hcc------cCCceEEEECCCCCccHHHHHHHHhcCCCcceEEEEEeHHHHHHhc-CCCCCccccHHHHHHHH
Confidence            876432 110      1345899999999999999998888777789999999999999999 99999999999999999


Q ss_pred             hhcccc
Q 023240          279 YSGQFC  284 (285)
Q Consensus       279 f~~~~~  284 (285)
                      ||++.+
T Consensus       151 ~~~~~~  156 (252)
T 1qyr_A          151 YCNVIP  156 (252)
T ss_dssp             HEEEEE
T ss_pred             HheEEE
Confidence            998753

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.88  E-value=2.7e-22  Score=180.30  Aligned_cols=153  Identities=33%  Similarity=0.488  Sum_probs=136.5

Q ss_pred             ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEE
Q 023240          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVL  192 (285)
Q Consensus       116 ~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~  192 (285)
                      ++.+||+|..++.+++.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.+++++...   ++++++
T Consensus         3 ~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~   82 (285)
T 1zq9_A            3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVL   82 (285)
T ss_dssp             -----CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred             CCCCCcCccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            46799999999999999999999988999999999999999999999899999999999999999998654   379999


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhH
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l  272 (285)
                      ++|+.+.++              +.||.|++|+||++.++++.+++.....+..+..+++++++.|++ ..||.+.|+.+
T Consensus        83 ~~D~~~~~~--------------~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~v-lkPGg~~y~~l  147 (285)
T 1zq9_A           83 VGDVLKTDL--------------PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV-AKPGDKLYCRL  147 (285)
T ss_dssp             ESCTTTSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHH-CCTTCTTCSHH
T ss_pred             Ecceecccc--------------hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHh-cCCCCcccchh
Confidence            999998753              368999999999999999999988878888999999999999988 89999999999


Q ss_pred             HHHHHHhhccc
Q 023240          273 NIFVNFYSGQF  283 (285)
Q Consensus       273 ~~~~~~f~~~~  283 (285)
                      ++..++++++.
T Consensus       148 sv~~~~~~~~~  158 (285)
T 1zq9_A          148 SINTQLLARVD  158 (285)
T ss_dssp             HHHHHHHEEEE
T ss_pred             hhhhhhhhhee
Confidence            99999998763

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.88  E-value=2.1e-22  Score=182.28  Aligned_cols=156  Identities=35%  Similarity=0.502  Sum_probs=130.8

Q ss_pred             CCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCe
Q 023240          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQL  189 (285)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v  189 (285)
                      +-.+++.|||+|..++.+++.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++++...  +++
T Consensus        13 ~~~~~k~~Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v   92 (299)
T 2h1r_A           13 GRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNL   92 (299)
T ss_dssp             ----------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred             cccchhccccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            456778899999999999999999999888899999999999999999998889999999999999999998643  589


Q ss_pred             EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCc
Q 023240          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEY  269 (285)
Q Consensus       190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y  269 (285)
                      +++++|+.+.++              +.||+|++|+||++..+++.+++.....+..+.++++++.+.|++ +.||...|
T Consensus        93 ~~~~~D~~~~~~--------------~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rll-a~~G~~~y  157 (299)
T 2h1r_A           93 EVYEGDAIKTVF--------------PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERML-ANVGDSNY  157 (299)
T ss_dssp             EC----CCSSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHT-CCTTSTTC
T ss_pred             EEEECchhhCCc--------------ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHh-cCCCCcch
Confidence            999999998753              478999999999999999988888888888889999999999999 89999999


Q ss_pred             hhHHHHHHHhhcc
Q 023240          270 RPINIFVNFYSGQ  282 (285)
Q Consensus       270 ~~l~~~~~~f~~~  282 (285)
                      +.+++..++|+++
T Consensus       158 ~~ls~~~~~~~~~  170 (299)
T 2h1r_A          158 SRLTINVKLFCKV  170 (299)
T ss_dssp             CHHHHHHHHHEEE
T ss_pred             hHHHHHHHHhhce
Confidence            9999999999865

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=99.87  E-value=1.1e-21  Score=180.78  Aligned_cols=165  Identities=17%  Similarity=0.176  Sum_probs=136.7

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCC------CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~------~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      .+++.|||||+.++.+++.+++.+.+.+      +..|||||+|.|.+|..|++.  +.+|++||+|+.++..+++.+ .
T Consensus        25 ~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~  103 (353)
T 1i4w_A           25 KLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E  103 (353)
T ss_dssp             SSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T
T ss_pred             CCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c
Confidence            5788999999999999999999998764      589999999999999999986  569999999999999999887 4


Q ss_pred             CCCeEEEEccccccc-chhhhhhHHhhh--c-----C---CCCceEEEEcCCCCCcHHHHHHhccCC--------Cceee
Q 023240          186 IDQLKVLQEDFVKCH-IRSHMLSLFERR--K-----S---SSGFAKVVANIPFNISTDVIKQLLPMG--------DIFSE  246 (285)
Q Consensus       186 ~~~v~~~~gD~~~~~-~~~~~~d~~~~~--~-----~---~~~~D~Vv~n~P~~~~~~i~~~l~~~g--------~~~~~  246 (285)
                      .++++++++|+.++. +.+    +++..  .     .   .+..-.||+|+||++.++++.+++...        ..+.+
T Consensus       104 ~~~l~ii~~D~l~~~~~~~----l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~  179 (353)
T 1i4w_A          104 GSPLQILKRDPYDWSTYSN----LIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVK  179 (353)
T ss_dssp             TSSCEEECSCTTCHHHHHH----HTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEE
T ss_pred             CCCEEEEECCccchhhHHH----hhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHhccccccccccCcce
Confidence            579999999998775 221    11100  0     0   001238999999999999998888631        13468


Q ss_pred             eEeeehHhHHHHhcCCCCCCCCchhHHHHHHHhhcccc
Q 023240          247 VVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFC  284 (285)
Q Consensus       247 ~~~~~~~~~~~rl~~~~~~~~~y~~l~~~~~~f~~~~~  284 (285)
                      +.+|+|+++++||+ +.||++.|+++|+++|+||++.+
T Consensus       180 m~lmvQkEvA~Rl~-A~PGsk~yg~LSV~~q~~~~v~~  216 (353)
T 1i4w_A          180 MLLWMPSTTARKLL-ARPGMHSRSKCSVVREAFTDTKL  216 (353)
T ss_dssp             EEEEEEHHHHHHHH-CCTTSTTCCHHHHHHHHHEEEEE
T ss_pred             EEEEeEHHHHHHhc-CCCCCccccHHHHHHHHHcceEE
Confidence            89999999999999 99999999999999999999854

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.86  E-value=4.2e-21  Score=168.81  Aligned_cols=151  Identities=25%  Similarity=0.406  Sum_probs=125.7

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~  193 (285)
                      .+++.|||+|.+++.++..+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.+++++...+++++++
T Consensus         3 ~~~k~~gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~   82 (244)
T 1qam_A            3 EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLN   82 (244)
T ss_dssp             -------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEEC
T ss_pred             CCCccCCccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEE
Confidence            56778999999999999999999998888999999999999999999999999999999999999999987667999999


Q ss_pred             cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (285)
Q Consensus       194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~  273 (285)
                      +|+.++++.           ....+ .|++|+||++.++++.+++.. .......++++++.+.|++ +.+     +.++
T Consensus        83 ~D~~~~~~~-----------~~~~~-~vv~nlPy~~~~~~l~~~l~~-~~~~~~~lm~q~e~a~rll-~~~-----G~l~  143 (244)
T 1qam_A           83 KDILQFKFP-----------KNQSY-KIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLL-NTK-----RSLA  143 (244)
T ss_dssp             CCGGGCCCC-----------SSCCC-EEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHT-CTT-----SHHH
T ss_pred             ChHHhCCcc-----------cCCCe-EEEEeCCcccCHHHHHHHHhc-CCCCeEEEEEEHHHHHHHh-cCC-----cchh
Confidence            999998752           12334 799999999999999888765 3456777899999999998 444     6899


Q ss_pred             HHHHHhhccc
Q 023240          274 IFVNFYSGQF  283 (285)
Q Consensus       274 ~~~~~f~~~~  283 (285)
                      +..+++|++.
T Consensus       144 v~~~~~~~~~  153 (244)
T 1qam_A          144 LFLMAEVDIS  153 (244)
T ss_dssp             HHHTTTEEEE
T ss_pred             HHhhhhEeEE
Confidence            9999998763

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.76  E-value=8.9e-20  Score=160.06  Aligned_cols=151  Identities=23%  Similarity=0.404  Sum_probs=127.3

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~  193 (285)
                      .+++.+||+|.+++.+.+.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|++++...+++++++
T Consensus         2 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~   81 (245)
T 1yub_A            2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH   81 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC
T ss_pred             CCCcccCCCCCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEE
Confidence            46788999999999999999999998888999999999999999999999999999999999999998876446899999


Q ss_pred             cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (285)
Q Consensus       194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~  273 (285)
                      +|+.++++.           ..+.| .|++||||+..++++.+++.. .......++++.+.+.+++ ..+     |.+.
T Consensus        82 ~D~~~~~~~-----------~~~~f-~vv~n~Py~~~~~~~~~~~~~-~~~~~~~lm~q~e~a~rll-~~~-----G~l~  142 (245)
T 1yub_A           82 QDILQFQFP-----------NKQRY-KIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTL-DIH-----RTLG  142 (245)
T ss_dssp             SCCTTTTCC-----------CSSEE-EEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHH-CGG-----GSHH
T ss_pred             CChhhcCcc-----------cCCCc-EEEEeCCccccHHHHHHHHhC-CCCCeEEEEeeHHHHHHHh-CCC-----Cchh
Confidence            999988641           22457 899999999999988877654 3345667789999999998 322     6688


Q ss_pred             HHHHHhhccc
Q 023240          274 IFVNFYSGQF  283 (285)
Q Consensus       274 ~~~~~f~~~~  283 (285)
                      +..+.++++.
T Consensus       143 v~~~~~~~~~  152 (245)
T 1yub_A          143 LLLHTQVSIQ  152 (245)
T ss_dssp             HHTTTTBCCC
T ss_pred             hhheeheeEE
Confidence            8888877654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.58  E-value=2.9e-14  Score=121.02  Aligned_cols=146  Identities=17%  Similarity=0.201  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhcCCC-chHHHHHHHHhCCC---CCc-------------cccCCcccCCHHHHHHHHHHhcCCCCCEEEEE
Q 023240           86 AASACIVCARSQDD-DYHATIKALNSKGR---FPR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (285)
Q Consensus        86 ~r~~mv~~q~~~~~-~~~~~~~~~~~~~~---~~~-------------~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDi  148 (285)
                      .|..|+.++++.++ ...++.+.+.....   .+.             ...++ +...+.+...+++.+...++.+|||+
T Consensus         6 ~~~~~~~~~l~~~gv~~~~~~~~~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~vLdi   84 (210)
T 3lbf_A            6 RRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQ-TISQPYMVARMTELLELTPQSRVLEI   84 (210)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECTTSC-EECCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHhCCHHHcCCcchhhhccCCCccccCCCC-EeCCHHHHHHHHHhcCCCCCCEEEEE
Confidence            45567777777777 55555555543211   010             01233 55688999999999999899999999


Q ss_pred             cCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          149 GPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       149 GcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      |||+|.++..+++.+.+|+++|+++.+++.|++++...  ++++++.+|+.+...            ..+.||+|+++..
T Consensus        85 G~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------~~~~~D~i~~~~~  152 (210)
T 3lbf_A           85 GTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ------------ARAPFDAIIVTAA  152 (210)
T ss_dssp             CCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG------------GGCCEEEEEESSB
T ss_pred             cCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc------------cCCCccEEEEccc
Confidence            99999999999999999999999999999999998765  379999999988642            3468999999855


Q ss_pred             CC-CcHHHHHHhccCCCce
Q 023240          227 FN-ISTDVIKQLLPMGDIF  244 (285)
Q Consensus       227 ~~-~~~~i~~~l~~~g~~~  244 (285)
                      ++ ....+.+.|.++|.++
T Consensus       153 ~~~~~~~~~~~L~pgG~lv  171 (210)
T 3lbf_A          153 PPEIPTALMTQLDEGGILV  171 (210)
T ss_dssp             CSSCCTHHHHTEEEEEEEE
T ss_pred             hhhhhHHHHHhcccCcEEE
Confidence            43 4445555555554443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.56  E-value=1.8e-14  Score=124.13  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=89.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (285)
                      ....+.++..+++.+...++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++...++++++.+|+.+..  
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~--  129 (231)
T 1vbf_A           52 NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY--  129 (231)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC--
T ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc--
Confidence            467889999999999888899999999999999999999889999999999999999999876668999999998732  


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCCc-HHHHHHhccCCCc
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLLPMGDI  243 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~~g~~  243 (285)
                                ...+.||+|+++.+++.. ..+.+.|.++|.+
T Consensus       130 ----------~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l  161 (231)
T 1vbf_A          130 ----------EEEKPYDRVVVWATAPTLLCKPYEQLKEGGIM  161 (231)
T ss_dssp             ----------GGGCCEEEEEESSBBSSCCHHHHHTEEEEEEE
T ss_pred             ----------ccCCCccEEEECCcHHHHHHHHHHHcCCCcEE
Confidence                      223679999998775544 4444444444443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.55  E-value=6.5e-14  Score=118.55  Aligned_cols=102  Identities=29%  Similarity=0.405  Sum_probs=86.3

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-C
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q  188 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~  188 (285)
                      .++..+++ |.+++.+...++..+.   ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++..++ +
T Consensus        20 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~   98 (207)
T 1wy7_A           20 NPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   98 (207)
T ss_dssp             SCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             Ccccceee-ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            45667788 8888888888776654   45678999999999999999998864 79999999999999999988666 8


Q ss_pred             eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (285)
Q Consensus       189 v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~  231 (285)
                      ++++++|+.+++               ..||+|++||||+...
T Consensus        99 ~~~~~~d~~~~~---------------~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           99 FKVFIGDVSEFN---------------SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             EEEEESCGGGCC---------------CCCSEEEECCCCSSSS
T ss_pred             EEEEECchHHcC---------------CCCCEEEEcCCCcccc
Confidence            999999998863               3799999999987653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.51  E-value=8.2e-14  Score=116.57  Aligned_cols=98  Identities=20%  Similarity=0.312  Sum_probs=77.7

Q ss_pred             ccCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~  196 (285)
                      ..+.+.+.+.++..+..   .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++++.++  +++++++|+
T Consensus        23 rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~  102 (189)
T 3p9n_A           23 RPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAV  102 (189)
T ss_dssp             ---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCH
T ss_pred             ccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccH
Confidence            34556666667666643   467899999999999999888775 489999999999999999987653  899999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .+.+..          .....||+|++||||+..
T Consensus       103 ~~~~~~----------~~~~~fD~i~~~~p~~~~  126 (189)
T 3p9n_A          103 AAVVAA----------GTTSPVDLVLADPPYNVD  126 (189)
T ss_dssp             HHHHHH----------CCSSCCSEEEECCCTTSC
T ss_pred             HHHHhh----------ccCCCccEEEECCCCCcc
Confidence            886421          125789999999999884

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.49  E-value=5.6e-13  Score=113.48  Aligned_cols=114  Identities=17%  Similarity=0.167  Sum_probs=89.0

Q ss_pred             CCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--C-CeEEEEccc
Q 023240          120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDF  196 (285)
Q Consensus       120 g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~-~v~~~~gD~  196 (285)
                      ....++.+++...++..+.+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++++..  + +++++.+|+
T Consensus        34 ~~~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~  113 (204)
T 3njr_A           34 HDGQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA  113 (204)
T ss_dssp             CSSCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred             cCCCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch
Confidence            3446778888889999999989999999999999999999999889999999999999999998755  3 799999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCC-cHHHHHHhccCCCcee
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPMGDIFS  245 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~-~~~i~~~l~~~g~~~~  245 (285)
                      .+..            ...+.||+|+++..... .-+.+.+++.+|+.+.
T Consensus       114 ~~~~------------~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv  151 (204)
T 3njr_A          114 PAAL------------ADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIV  151 (204)
T ss_dssp             TGGG------------TTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEE
T ss_pred             hhhc------------ccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEE
Confidence            8842            22357999999875432 1122234444555543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.48  E-value=6.2e-13  Score=112.41  Aligned_cols=111  Identities=13%  Similarity=0.232  Sum_probs=90.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~  198 (285)
                      .++.+++...++..+.+.++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.|+++++..  ++++++.+|+.+
T Consensus        22 ~~~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  101 (204)
T 3e05_A           22 LITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE  101 (204)
T ss_dssp             TSCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTT
T ss_pred             cCChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhh
Confidence            34788888999999999999999999999999999999986  79999999999999999998754  489999999976


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCcee
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIFS  245 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~~  245 (285)
                      ..            ...+.||+|+++.++.....+++   +++.+|+.+.
T Consensus       102 ~~------------~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~  139 (204)
T 3e05_A          102 GL------------DDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIV  139 (204)
T ss_dssp             TC------------TTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEE
T ss_pred             hh------------hcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEE
Confidence            53            22367999999988765555543   4445555553

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.46  E-value=3.1e-13  Score=112.35  Aligned_cols=79  Identities=14%  Similarity=0.278  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++++..  ++++++++|+.+++.           ...+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----------~~~~   88 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----------YVRE   88 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----------TCCS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----------hccC
Confidence            457889999999999999999999899999999999999999998754  589999988877542           1346


Q ss_pred             CceEEEEcCCCC
Q 023240          217 GFAKVVANIPFN  228 (285)
Q Consensus       217 ~~D~Vv~n~P~~  228 (285)
                      .||+|++|++|.
T Consensus        89 ~fD~v~~~~~~~  100 (185)
T 3mti_A           89 PIRAAIFNLGYL  100 (185)
T ss_dssp             CEEEEEEEEC--
T ss_pred             CcCEEEEeCCCC
Confidence            799999997663

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.46  E-value=9.9e-13  Score=111.86  Aligned_cols=149  Identities=16%  Similarity=0.157  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHhcCCC-chHHHHHHHHhCCC---CCcc----cc--------CCcccCCHHHHHHHHHHhcCCCCCEEEE
Q 023240           84 KGAASACIVCARSQDD-DYHATIKALNSKGR---FPRK----SL--------GQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (285)
Q Consensus        84 ~~~r~~mv~~q~~~~~-~~~~~~~~~~~~~~---~~~~----~~--------g~~~~~~~~~~~~l~~~l~~~~~~~VLD  147 (285)
                      ..+|..|+++..+.+. ...++.+.+.....   .+..    .|        ....+..+.++..+++.+...++.+|||
T Consensus         4 ~~~~~~~~~~l~~~~~~~~~~v~~a~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLd   83 (215)
T 2yxe_A            4 EEQKKAVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLDLKPGMKVLE   83 (215)
T ss_dssp             HHHHHHHHHHHHHHTSCCCHHHHHHHHHSCGGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             HHHHHHHHHHhHHhcCCCCHHHHHHHHhCCHHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhCCCCCCEEEE
Confidence            3467777754327666 55666666655321   1110    01        1124566888999999998888999999


Q ss_pred             EcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240          148 IGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (285)
Q Consensus       148 iGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv  222 (285)
                      ||||+|.++..+++..   .+|+++|+++.+++.|++++...  ++++++.+|+....            ...+.||+|+
T Consensus        84 iG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~~~~fD~v~  151 (215)
T 2yxe_A           84 IGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY------------EPLAPYDRIY  151 (215)
T ss_dssp             ECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC------------GGGCCEEEEE
T ss_pred             ECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC------------CCCCCeeEEE
Confidence            9999999999999874   79999999999999999987643  47999999985432            2246799999


Q ss_pred             EcCCCCCcHHHHHHhccCCCce
Q 023240          223 ANIPFNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       223 ~n~P~~~~~~i~~~l~~~g~~~  244 (285)
                      ++.+++...+.+.+++.+|+.+
T Consensus       152 ~~~~~~~~~~~~~~~L~pgG~l  173 (215)
T 2yxe_A          152 TTAAGPKIPEPLIRQLKDGGKL  173 (215)
T ss_dssp             ESSBBSSCCHHHHHTEEEEEEE
T ss_pred             ECCchHHHHHHHHHHcCCCcEE
Confidence            9977655444444444444433

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.46  E-value=4.1e-13  Score=113.17  Aligned_cols=95  Identities=19%  Similarity=0.262  Sum_probs=75.0

Q ss_pred             ccCCcccCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240          118 SLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (285)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~  193 (285)
                      .+++ +.++..+...++..+.   ..++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|++++.   ++++++
T Consensus        26 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~  101 (200)
T 1ne2_A           26 YLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVNFMV  101 (200)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSEEEE
T ss_pred             ceee-cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCEEEE
Confidence            4455 6777777777776653   44678999999999999999998865 79999999999999999975   799999


Q ss_pred             cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (285)
Q Consensus       194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~  231 (285)
                      +|+.+++               +.||+|++||||+...
T Consensus       102 ~d~~~~~---------------~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A          102 ADVSEIS---------------GKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             CCGGGCC---------------CCEEEEEECCCC----
T ss_pred             CcHHHCC---------------CCeeEEEECCCchhcc
Confidence            9998853               5799999999987654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.46  E-value=1.5e-13  Score=116.79  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=75.1

Q ss_pred             CCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240          125 LNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~  200 (285)
                      +...+...+++.+... ++.+|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|+++++.++  +++++++|+.+..
T Consensus        37 ~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~  116 (202)
T 2fpo_A           37 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  116 (202)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence            3455666666666543 67899999999999999888776 499999999999999999987664  8999999998742


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      .           .....||+|++||||+.
T Consensus       117 ~-----------~~~~~fD~V~~~~p~~~  134 (202)
T 2fpo_A          117 A-----------QKGTPHNIVFVDPPFRR  134 (202)
T ss_dssp             S-----------SCCCCEEEEEECCSSST
T ss_pred             h-----------hcCCCCCEEEECCCCCC
Confidence            1           23467999999999763

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.46  E-value=3.7e-13  Score=127.48  Aligned_cols=106  Identities=20%  Similarity=0.221  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchh
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~  203 (285)
                      .+.++..+++.+...++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|++.++  +++++++|+.+.....
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~  350 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ  350 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh
Confidence            34567777788877778899999999999999999988899999999999999999987654  8999999998732100


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhcc
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~  239 (285)
                      .        .....||+|++|||+....++++.+..
T Consensus       351 ~--------~~~~~fD~Vv~dPPr~g~~~~~~~l~~  378 (433)
T 1uwv_A          351 P--------WAKNGFDKVLLDPARAGAAGVMQQIIK  378 (433)
T ss_dssp             G--------GGTTCCSEEEECCCTTCCHHHHHHHHH
T ss_pred             h--------hhcCCCCEEEECCCCccHHHHHHHHHh
Confidence            0        123579999999999988888877754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.45  E-value=7e-13  Score=113.93  Aligned_cols=93  Identities=16%  Similarity=0.244  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccch
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIR  202 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~  202 (285)
                      +....+.+.......++.+|||+||| +|.++..+++. +.+|+|+|+++.+++.|++++..++ +++++++|+..... 
T Consensus        40 p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-  118 (230)
T 3evz_A           40 TTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKG-  118 (230)
T ss_dssp             CCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTT-
T ss_pred             CCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhh-
Confidence            33334555334445678899999999 99999999998 8999999999999999999998765 89999999754421 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                ...+.||+|++||||..
T Consensus       119 ----------~~~~~fD~I~~npp~~~  135 (230)
T 3evz_A          119 ----------VVEGTFDVIFSAPPYYD  135 (230)
T ss_dssp             ----------TCCSCEEEEEECCCCC-
T ss_pred             ----------cccCceeEEEECCCCcC
Confidence                      23478999999999965

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.45  E-value=2.7e-13  Score=119.28  Aligned_cols=89  Identities=15%  Similarity=0.246  Sum_probs=72.5

Q ss_pred             HHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhh
Q 023240          132 QLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       132 ~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~  206 (285)
                      .+..++... ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++..++   +++++++|+.+.+..    
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~----  114 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL----  114 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT----
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh----
Confidence            344555666 788999999999999999998854 99999999999999999988654   699999999887521    


Q ss_pred             hHHhhhcCCCCceEEEEcCCCCCc
Q 023240          207 SLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                            ...+.||+|++||||...
T Consensus       115 ------~~~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A          115 ------IPKERADIVTCNPPYFAT  132 (259)
T ss_dssp             ------SCTTCEEEEEECCCC---
T ss_pred             ------hccCCccEEEECCCCCCC
Confidence                  135789999999998644

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.45  E-value=1.9e-12  Score=112.10  Aligned_cols=141  Identities=12%  Similarity=0.158  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH--h
Q 023240           85 GAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--A  162 (285)
Q Consensus        85 ~~r~~mv~~q~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~--~  162 (285)
                      ...+++........+....+.+.....+.         +.+.+.....+...+...++.+|||||||+|+++..++.  .
T Consensus        24 ~l~~yl~~~~~~~~~~l~~l~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~   94 (232)
T 3ntv_A           24 LNKKYLIDLHQHQNSSIEVLREFAEVNEV---------PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD   94 (232)
T ss_dssp             HHHHHHHHHHGGGCCGGGGHHHHHHHTTC---------CCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHcCC---------CCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC
Confidence            34445544444444444444444433222         456688888888877777889999999999999999998  4


Q ss_pred             CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---H
Q 023240          163 GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---Q  236 (285)
Q Consensus       163 ~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~  236 (285)
                      +.+|+++|+++.+++.|+++++..+   +++++.+|+.+.....          ..+.||+|+.+.+......+++   +
T Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----------~~~~fD~V~~~~~~~~~~~~l~~~~~  164 (232)
T 3ntv_A           95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV----------NDKVYDMIFIDAAKAQSKKFFEIYTP  164 (232)
T ss_dssp             TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH----------TTSCEEEEEEETTSSSHHHHHHHHGG
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh----------ccCCccEEEEcCcHHHHHHHHHHHHH
Confidence            6899999999999999999987653   8999999998753100          1467999999988776666554   3


Q ss_pred             hccCCCce
Q 023240          237 LLPMGDIF  244 (285)
Q Consensus       237 l~~~g~~~  244 (285)
                      ++.+|+.+
T Consensus       165 ~LkpgG~l  172 (232)
T 3ntv_A          165 LLKHQGLV  172 (232)
T ss_dssp             GEEEEEEE
T ss_pred             hcCCCeEE
Confidence            33444444

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.45  E-value=8.5e-13  Score=121.49  Aligned_cols=95  Identities=21%  Similarity=0.221  Sum_probs=83.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      ....+.++..++..+.+.++.+|||+|||+|.+++.++..+   .+|+|+|+|+.+++.|++|++..+  +++++++|+.
T Consensus       185 a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~  264 (354)
T 3tma_A          185 GSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR  264 (354)
T ss_dssp             CSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG
T ss_pred             CCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh
Confidence            45667888899999998888999999999999999999864   799999999999999999998765  7999999999


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +++.            ....||+|++||||..
T Consensus       265 ~~~~------------~~~~~D~Ii~npPyg~  284 (354)
T 3tma_A          265 HLPR------------FFPEVDRILANPPHGL  284 (354)
T ss_dssp             GGGG------------TCCCCSEEEECCCSCC
T ss_pred             hCcc------------ccCCCCEEEECCCCcC
Confidence            9863            3355899999999975

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.44  E-value=3.4e-13  Score=114.58  Aligned_cols=88  Identities=17%  Similarity=0.067  Sum_probs=72.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc--------------CCCeEEEEcc
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKVLQED  195 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~--------------~~~v~~~~gD  195 (285)
                      +..++..+.+.++.+|||+|||+|..+..+++.|.+|+|||+|+.|++.|+++...              .++++++++|
T Consensus        11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d   90 (203)
T 1pjz_A           11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   90 (203)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence            34445666666788999999999999999999999999999999999999988652              3589999999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +.++++.+           .++||+|+++..++
T Consensus        91 ~~~l~~~~-----------~~~fD~v~~~~~l~  112 (203)
T 1pjz_A           91 FFALTARD-----------IGHCAAFYDRAAMI  112 (203)
T ss_dssp             CSSSTHHH-----------HHSEEEEEEESCGG
T ss_pred             cccCCccc-----------CCCEEEEEECcchh
Confidence            99987421           15799999875553

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.44  E-value=6.6e-13  Score=123.33  Aligned_cols=95  Identities=18%  Similarity=0.224  Sum_probs=82.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~--~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~  197 (285)
                      ....+.++..++... +.++.+|||+|||+|.+++.++..+.  +|+|+|+|+.+++.|++|+..++   +++++++|+.
T Consensus       200 a~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          200 AHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             TCCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             CCccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            345788888888888 77889999999999999999999865  99999999999999999998664   7999999999


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      +++.            ..+.||+|++||||...
T Consensus       279 ~~~~------------~~~~fD~Ii~npPyg~r  299 (373)
T 3tm4_A          279 QLSQ------------YVDSVDFAISNLPYGLK  299 (373)
T ss_dssp             GGGG------------TCSCEEEEEEECCCC--
T ss_pred             hCCc------------ccCCcCEEEECCCCCcc
Confidence            9863            34679999999999753

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.44  E-value=1.6e-12  Score=106.82  Aligned_cols=102  Identities=16%  Similarity=0.232  Sum_probs=86.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~  200 (285)
                      ....+.+...++..+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++++.+  ++++++++|+.+ +
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~   95 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V   95 (183)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred             CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence            5777889999999998888899999999999999999997789999999999999999998765  479999999987 3


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhc
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL  238 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~  238 (285)
                      +            ..+.||+|+++++ .....+++.+.
T Consensus        96 ~------------~~~~~D~i~~~~~-~~~~~~l~~~~  120 (183)
T 2yxd_A           96 L------------DKLEFNKAFIGGT-KNIEKIIEILD  120 (183)
T ss_dssp             G------------GGCCCSEEEECSC-SCHHHHHHHHH
T ss_pred             c------------cCCCCcEEEECCc-ccHHHHHHHHh
Confidence            2            2367999999988 55566665444

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.43  E-value=5.4e-13  Score=108.82  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=82.4

Q ss_pred             ccCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccc
Q 023240          123 YMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~  199 (285)
                      ..+...+...++..+...  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...+ +++++++|+.+.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  100 (171)
T 1ws6_A           21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF  100 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHH
Confidence            445677777777777642  67899999999999999999998889999999999999999987655 899999999874


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCC-CcHHHHHHh
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQL  237 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~-~~~~i~~~l  237 (285)
                      ...     ..   .....||+|++|+||+ ...++++.+
T Consensus       101 ~~~-----~~---~~~~~~D~i~~~~~~~~~~~~~~~~~  131 (171)
T 1ws6_A          101 LPE-----AK---AQGERFTVAFMAPPYAMDLAALFGEL  131 (171)
T ss_dssp             HHH-----HH---HTTCCEEEEEECCCTTSCTTHHHHHH
T ss_pred             HHh-----hh---ccCCceEEEEECCCCchhHHHHHHHH
Confidence            210     00   1234799999999984 334444443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.43  E-value=2.8e-13  Score=114.97  Aligned_cols=101  Identities=18%  Similarity=0.251  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC----CCeEEEEccccccc
Q 023240          127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~----~~v~~~~gD~~~~~  200 (285)
                      ..+...++..+... ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++++.+    ++++++++|+.+..
T Consensus        38 ~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~  117 (201)
T 2ift_A           38 DRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  117 (201)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH
Confidence            34555555555432 67899999999999999877776 59999999999999999998754    37999999998753


Q ss_pred             chhhhhhHHhhhcCCCC-ceEEEEcCCCCCc--HHHHHHh
Q 023240          201 IRSHMLSLFERRKSSSG-FAKVVANIPFNIS--TDVIKQL  237 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~-~D~Vv~n~P~~~~--~~i~~~l  237 (285)
                      ..          ..... ||+|++||||...  ..++..+
T Consensus       118 ~~----------~~~~~~fD~I~~~~~~~~~~~~~~l~~~  147 (201)
T 2ift_A          118 KQ----------PQNQPHFDVVFLDPPFHFNLAEQAISLL  147 (201)
T ss_dssp             TS----------CCSSCCEEEEEECCCSSSCHHHHHHHHH
T ss_pred             Hh----------hccCCCCCEEEECCCCCCccHHHHHHHH
Confidence            21          12467 9999999997643  2344444

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.43  E-value=2.2e-12  Score=111.62  Aligned_cols=150  Identities=13%  Similarity=0.148  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHhcCCC-chHHHHHHHHhCC---CCCcc------------ccCCcccCCHHHHHHHHHHhcCCCCCEEE
Q 023240           83 QKGAASACIVCARSQDD-DYHATIKALNSKG---RFPRK------------SLGQHYMLNSEINDQLAAAAAVQEGDIVL  146 (285)
Q Consensus        83 ~~~~r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~~------------~~g~~~~~~~~~~~~l~~~l~~~~~~~VL  146 (285)
                      ....|..|++...+... ......+.+....   +.+..            .........+.+...+++.+...++.+||
T Consensus        17 ~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vL   96 (235)
T 1jg1_A           17 LYEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNIL   96 (235)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTCCTTCCEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCHhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcCCCCCCEEE
Confidence            44577888877553443 4445555444321   11111            01223556788999999999988899999


Q ss_pred             EEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEE
Q 023240          147 EIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       147 DiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                      |||||+|.++..+++.. .+|+++|+++.+++.|++++...  ++++++.+|+. .++           .....||+|++
T Consensus        97 diG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~-----------~~~~~fD~Ii~  164 (235)
T 1jg1_A           97 EVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KGF-----------PPKAPYDVIIV  164 (235)
T ss_dssp             EECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCC-----------GGGCCEEEEEE
T ss_pred             EEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cCC-----------CCCCCccEEEE
Confidence            99999999999999885 89999999999999999998755  37999999983 332           22346999999


Q ss_pred             cCCCC-CcHHHHHHhccCCCce
Q 023240          224 NIPFN-ISTDVIKQLLPMGDIF  244 (285)
Q Consensus       224 n~P~~-~~~~i~~~l~~~g~~~  244 (285)
                      +.+.. ....+.+.|.++|.++
T Consensus       165 ~~~~~~~~~~~~~~L~pgG~lv  186 (235)
T 1jg1_A          165 TAGAPKIPEPLIEQLKIGGKLI  186 (235)
T ss_dssp             CSBBSSCCHHHHHTEEEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCCcEEE
Confidence            87654 4455555555554443

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.43  E-value=3.6e-13  Score=111.30  Aligned_cols=83  Identities=24%  Similarity=0.268  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240          126 NSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       126 ~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (285)
                      +......+++.+..  .++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++.       .++++++++|+.+ ++  
T Consensus         6 P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-------~~~~~~~~~d~~~-~~--   74 (170)
T 3q87_B            6 PGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-------HRGGNLVRADLLC-SI--   74 (170)
T ss_dssp             CCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-------CSSSCEEECSTTT-TB--
T ss_pred             cCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-------ccCCeEEECChhh-hc--
Confidence            33444455555554  567899999999999999999988 99999999999988       3589999999987 32  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                ..+.||+|++||||..
T Consensus        75 ----------~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           75 ----------NQESVDVVVFNPPYVP   90 (170)
T ss_dssp             ----------CGGGCSEEEECCCCBT
T ss_pred             ----------ccCCCCEEEECCCCcc
Confidence                      2367999999999974

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.42  E-value=4.7e-13  Score=115.98  Aligned_cols=95  Identities=20%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240          125 LNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~  200 (285)
                      .+..+...+...+.. .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...+   +++++++|+.+.+
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  140 (241)
T 3gdh_A           61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA  140 (241)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG
T ss_pred             CHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc
Confidence            344455555555432 367899999999999999999999999999999999999999987654   7999999998874


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcHH
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~  232 (285)
                                   ....||+|++|+|++....
T Consensus       141 -------------~~~~~D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          141 -------------SFLKADVVFLSPPWGGPDY  159 (241)
T ss_dssp             -------------GGCCCSEEEECCCCSSGGG
T ss_pred             -------------ccCCCCEEEECCCcCCcch
Confidence                         2367999999999986543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.42  E-value=1e-12  Score=108.42  Aligned_cols=92  Identities=14%  Similarity=0.294  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240          126 NSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (285)
Q Consensus       126 ~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~  200 (285)
                      ...+...++..+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...+   +++++.+|+.+..
T Consensus        15 ~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (177)
T 2esr_A           15 SDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI   94 (177)
T ss_dssp             ---CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence            3455667777776 5577899999999999999999885 599999999999999999988663   6999999998742


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      .           ...+.||+|++|+||.
T Consensus        95 ~-----------~~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           95 D-----------CLTGRFDLVFLDPPYA  111 (177)
T ss_dssp             H-----------HBCSCEEEEEECCSSH
T ss_pred             H-----------hhcCCCCEEEECCCCC
Confidence            1           1235699999999984

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.41  E-value=3.9e-12  Score=109.13  Aligned_cols=150  Identities=12%  Similarity=0.177  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhcCCC-chHHHHHHHHhCC---CCCccc---------cCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcC
Q 023240           86 AASACIVCARSQDD-DYHATIKALNSKG---RFPRKS---------LGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGP  150 (285)
Q Consensus        86 ~r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~~~---------~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGc  150 (285)
                      .++.|++++.+... ....+.+.+....   +.+...         .++ .+..+.+...+++.+  .+.++.+||||||
T Consensus        11 ~~~~~~~~l~~~~~~~~~~v~~~~~~~~r~~f~p~~~y~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~   89 (227)
T 2pbf_A           11 NHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGV-TISAPHMHALSLKRLINVLKPGSRAIDVGS   89 (227)
T ss_dssp             CHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSSTTSSSCEEEETTE-EECCHHHHHHHHHHHTTTSCTTCEEEEESC
T ss_pred             hHHHHHHHHHhcCCcCCHHHHHHHHhCCHHHcCCcccCCCCccccCCCC-ccCChHHHHHHHHHHHhhCCCCCEEEEECC
Confidence            35677777666553 4555666654421   111111         122 566788888888888  4677899999999


Q ss_pred             cccHHHHHHHHhC-------CEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          151 GTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       151 G~G~~t~~la~~~-------~~V~giD~~~~~v~~a~~~~~~~-------~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      |+|+++..+++..       .+|+++|+++.+++.|++++...       ++++++.+|+.+..... .       ....
T Consensus        90 G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~-------~~~~  161 (227)
T 2pbf_A           90 GSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE-K-------KELG  161 (227)
T ss_dssp             TTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH-H-------HHHC
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc-C-------ccCC
Confidence            9999999999874       39999999999999999997643       48999999998753100 0       0135


Q ss_pred             CceEEEEcCCCCCc-HHHHHHhccCCCce
Q 023240          217 GFAKVVANIPFNIS-TDVIKQLLPMGDIF  244 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~-~~i~~~l~~~g~~~  244 (285)
                      .||+|+++.+.... ..+.+.|.++|.++
T Consensus       162 ~fD~I~~~~~~~~~~~~~~~~LkpgG~lv  190 (227)
T 2pbf_A          162 LFDAIHVGASASELPEILVDLLAENGKLI  190 (227)
T ss_dssp             CEEEEEECSBBSSCCHHHHHHEEEEEEEE
T ss_pred             CcCEEEECCchHHHHHHHHHhcCCCcEEE
Confidence            79999998776544 45555555554444

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.41  E-value=2.6e-12  Score=106.50  Aligned_cols=90  Identities=17%  Similarity=0.320  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--C--eEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~--v~~~~gD~~~~~~~~  203 (285)
                      .....+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...+  +  ++++.+|+.+..   
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---  115 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---  115 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc---
Confidence            677888888888888999999999999999999888899999999999999999987543  4  999999998742   


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                                ....||+|++|+|++..
T Consensus       116 ----------~~~~~D~v~~~~~~~~~  132 (194)
T 1dus_A          116 ----------KDRKYNKIITNPPIRAG  132 (194)
T ss_dssp             ----------TTSCEEEEEECCCSTTC
T ss_pred             ----------ccCCceEEEECCCcccc
Confidence                      34679999999998863

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.39  E-value=1.3e-12  Score=115.25  Aligned_cols=93  Identities=23%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc---CC---CeEEEEcccccccchhh
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---ID---QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~---~~---~v~~~~gD~~~~~~~~~  204 (285)
                      +..++...++.+|||+|||+|.+++.++..  +.+|+|+|+++.+++.|++++..   ++   +++++++|+.+....  
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~--  105 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA--  105 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH--
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh--
Confidence            444555667789999999999999999987  46999999999999999999887   53   599999999886210  


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                         ..........||+|++||||...
T Consensus       106 ---~~~~~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          106 ---RVEAGLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             ---HHHTTCCTTCEEEEEECCCC---
T ss_pred             ---hhhhccCCCCcCEEEECCCCcCC
Confidence               00000134679999999999754

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.39  E-value=2.9e-12  Score=113.38  Aligned_cols=76  Identities=22%  Similarity=0.355  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhh
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ++++.+|||+|||+|..+..+++.    +++|+|||+|+.|++.|+++++..   .+++++++|+.++++          
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----------  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------  137 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence            447889999999999999999985    569999999999999999998754   389999999998764          


Q ss_pred             hcCCCCceEEEEcCCCC
Q 023240          212 RKSSSGFAKVVANIPFN  228 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~  228 (285)
                          +.+|+|+++.-.+
T Consensus       138 ----~~~d~v~~~~~l~  150 (261)
T 4gek_A          138 ----ENASMVVLNFTLQ  150 (261)
T ss_dssp             ----CSEEEEEEESCGG
T ss_pred             ----cccccceeeeeee
Confidence                4589999986654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.39  E-value=2.8e-12  Score=112.98  Aligned_cols=92  Identities=12%  Similarity=0.022  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh-------------------c
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA-------------------S  185 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~-------------------~  185 (285)
                      ..+.+.+.+...+...++.+|||+|||+|..+..|++.|.+|+|||+|+.|++.|+++..                   .
T Consensus        52 ~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~  131 (252)
T 2gb4_A           52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS  131 (252)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence            345555555554444567899999999999999999999999999999999999987763                   1


Q ss_pred             CCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          186 IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       186 ~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      .++++++++|+.+++.           ...+.||+|+.+..+
T Consensus       132 ~~~i~~~~~D~~~l~~-----------~~~~~FD~V~~~~~l  162 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPR-----------ANIGKFDRIWDRGAL  162 (252)
T ss_dssp             TSSEEEEESCTTTGGG-----------GCCCCEEEEEESSST
T ss_pred             CCceEEEECccccCCc-----------ccCCCEEEEEEhhhh
Confidence            2589999999999864           223689999987554

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.38  E-value=1.6e-12  Score=121.21  Aligned_cols=90  Identities=26%  Similarity=0.379  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhh
Q 023240          128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       128 ~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~  204 (285)
                      .+++.+...+.  ..++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|++++..++ +++++++|+.+...   
T Consensus       218 ~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~---  294 (381)
T 3dmg_A          218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALT---  294 (381)
T ss_dssp             HHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSC---
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccc---
Confidence            34444444442  3367899999999999999999999999999999999999999998765 79999999988752   


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                               ....||+|++||||+.
T Consensus       295 ---------~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          295 ---------EEARFDIIVTNPPFHV  310 (381)
T ss_dssp             ---------TTCCEEEEEECCCCCT
T ss_pred             ---------cCCCeEEEEECCchhh
Confidence                     3478999999999986

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.38  E-value=1.1e-12  Score=122.15  Aligned_cols=89  Identities=16%  Similarity=0.190  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEccccccc
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCH  200 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD~~~~~  200 (285)
                      ...+.+++.+...++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.|++++..++     +++++.+|+.+. 
T Consensus       209 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-  287 (375)
T 4dcm_A          209 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-  287 (375)
T ss_dssp             HHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-
T ss_pred             HHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-
Confidence            34556788887777789999999999999999998  6799999999999999999987654     588899999873 


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                  ...+.||+|++||||+.
T Consensus       288 ------------~~~~~fD~Ii~nppfh~  304 (375)
T 4dcm_A          288 ------------VEPFRFNAVLCNPPFHQ  304 (375)
T ss_dssp             ------------CCTTCEEEEEECCCC--
T ss_pred             ------------CCCCCeeEEEECCCccc
Confidence                        24468999999999974

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.38  E-value=1.5e-12  Score=118.18  Aligned_cols=109  Identities=16%  Similarity=0.189  Sum_probs=87.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~  197 (285)
                      ....+.....+++.+.+.++.+|||||||+|.++..+++.+   .+|+|+|+++++++.|+++++..  ++++++.+|+.
T Consensus        57 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~  136 (317)
T 1dl5_A           57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY  136 (317)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             eccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChh
Confidence            34567889999999999899999999999999999999874   45999999999999999998755  37999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH-HHhccCCCc
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI-KQLLPMGDI  243 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~-~~l~~~g~~  243 (285)
                      +.+.            ..+.||+|+++.+++...+.+ +.|.++|.+
T Consensus       137 ~~~~------------~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~l  171 (317)
T 1dl5_A          137 YGVP------------EFSPYDVIFVTVGVDEVPETWFTQLKEGGRV  171 (317)
T ss_dssp             GCCG------------GGCCEEEEEECSBBSCCCHHHHHHEEEEEEE
T ss_pred             hccc------------cCCCeEEEEEcCCHHHHHHHHHHhcCCCcEE
Confidence            8542            236799999998875554444 444444433

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.38  E-value=1.4e-12  Score=116.85  Aligned_cols=89  Identities=18%  Similarity=0.266  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccch
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIR  202 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~  202 (285)
                      +.+++.++..+...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++|+..++   +++++++|+.+..  
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~--  186 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF--  186 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG--
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc--
Confidence            355666776665446679999999999999999988 7899999999999999999988654   4999999998731  


Q ss_pred             hhhhhHHhhhcCCCCc---eEEEEcCCCCC
Q 023240          203 SHMLSLFERRKSSSGF---AKVVANIPFNI  229 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~---D~Vv~n~P~~~  229 (285)
                                 . +.|   |+|++||||..
T Consensus       187 -----------~-~~f~~~D~IvsnPPyi~  204 (284)
T 1nv8_A          187 -----------K-EKFASIEMILSNPPYVK  204 (284)
T ss_dssp             -----------G-GGTTTCCEEEECCCCBC
T ss_pred             -----------c-cccCCCCEEEEcCCCCC
Confidence                       1 357   99999999964

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.37  E-value=1.5e-12  Score=109.27  Aligned_cols=81  Identities=16%  Similarity=0.310  Sum_probs=68.7

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHH
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ...+.++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.|+++++..   ++++++++|+.+++.        
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------   88 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK--------   88 (197)
T ss_dssp             HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG--------
T ss_pred             HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh--------
Confidence            345567889999999999999999986   269999999999999999998764   479999999988752        


Q ss_pred             hhhcCCCCceEEEEcCCC
Q 023240          210 ERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~  227 (285)
                         ...+.||+|++|+||
T Consensus        89 ---~~~~~fD~v~~~~~~  103 (197)
T 3eey_A           89 ---YIDCPVKAVMFNLGY  103 (197)
T ss_dssp             ---TCCSCEEEEEEEESB
T ss_pred             ---hccCCceEEEEcCCc
Confidence               134689999999987

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.37  E-value=1.6e-12  Score=120.54  Aligned_cols=117  Identities=13%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~  204 (285)
                      +.+...+++.+... +.+|||+|||+|.+++.+|+.+.+|+|+|+++.+++.|++|++.++  +++++++|+.++.....
T Consensus       200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~  278 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN  278 (369)
T ss_dssp             HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHS
T ss_pred             HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHh
Confidence            55566677766654 5789999999999999999877899999999999999999998664  89999999987531100


Q ss_pred             ---hhhHHhhh-cCCCCceEEEEcCCCC-CcHHHHHHhccCCCce
Q 023240          205 ---MLSLFERR-KSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIF  244 (285)
Q Consensus       205 ---~~d~~~~~-~~~~~~D~Vv~n~P~~-~~~~i~~~l~~~g~~~  244 (285)
                         .++.+... .....||+||.|||+. ....+++.+.+++.++
T Consensus       279 ~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~iv  323 (369)
T 3bt7_A          279 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRIL  323 (369)
T ss_dssp             SCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEE
T ss_pred             hccccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEE
Confidence               00000000 0013799999999986 4456777776554433

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.37  E-value=1.7e-12  Score=107.46  Aligned_cols=107  Identities=15%  Similarity=0.318  Sum_probs=82.0

Q ss_pred             ccCCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~  197 (285)
                      ..+.+.++..++..+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++..+   ++++++++|+.
T Consensus        25 rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  104 (187)
T 2fhp_A           25 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN  104 (187)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHH
Confidence            3456778888888885 3467899999999999999888875 69999999999999999998754   37999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCC--cHHHHHHh
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQL  237 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~--~~~i~~~l  237 (285)
                      +....     +.   .....||+|++|+||..  ..+.+..+
T Consensus       105 ~~~~~-----~~---~~~~~fD~i~~~~~~~~~~~~~~~~~l  138 (187)
T 2fhp_A          105 RALEQ-----FY---EEKLQFDLVLLDPPYAKQEIVSQLEKM  138 (187)
T ss_dssp             HHHHH-----HH---HTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred             HHHHH-----HH---hcCCCCCEEEECCCCCchhHHHHHHHH
Confidence            74310     00   12468999999999762  23444444

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.37  E-value=6.1e-12  Score=108.20  Aligned_cols=145  Identities=17%  Similarity=0.247  Sum_probs=102.2

Q ss_pred             HHHHHHHHhcCCC-chHHHHHHHHhCC---CCCcc---------ccCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCc
Q 023240           87 ASACIVCARSQDD-DYHATIKALNSKG---RFPRK---------SLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPG  151 (285)
Q Consensus        87 r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~~---------~~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG  151 (285)
                      ++.|++++.+.+. ...++.+.+....   +.+..         ..++ .+..+.+...+++.+  .+.++.+|||||||
T Consensus        16 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~~y~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G   94 (227)
T 1r18_A           16 NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGV-TISAPHMHAFALEYLRDHLKPGARILDVGSG   94 (227)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCT
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHhCCHHHcCCcccccCCCcccCCCC-ccCChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            4567776665553 3455666554421   11111         1233 566888899999988  46778899999999


Q ss_pred             ccHHHHHHHHh-C-------CEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          152 TGSLTNVLLNA-G-------ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       152 ~G~~t~~la~~-~-------~~V~giD~~~~~v~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +|+++..+++. +       .+|+++|+++.+++.|++++..       .++++++.+|+.+. +           ....
T Consensus        95 ~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~-----------~~~~  162 (227)
T 1r18_A           95 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-Y-----------PPNA  162 (227)
T ss_dssp             TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-C-----------GGGC
T ss_pred             ccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC-C-----------CcCC
Confidence            99999999885 4       5999999999999999998764       34899999999872 2           2236


Q ss_pred             CceEEEEcCCCCC-cHHHHHHhccCCCce
Q 023240          217 GFAKVVANIPFNI-STDVIKQLLPMGDIF  244 (285)
Q Consensus       217 ~~D~Vv~n~P~~~-~~~i~~~l~~~g~~~  244 (285)
                      .||+|+++.+... ...+.+.|.++|.++
T Consensus       163 ~fD~I~~~~~~~~~~~~~~~~LkpgG~lv  191 (227)
T 1r18_A          163 PYNAIHVGAAAPDTPTELINQLASGGRLI  191 (227)
T ss_dssp             SEEEEEECSCBSSCCHHHHHTEEEEEEEE
T ss_pred             CccEEEECCchHHHHHHHHHHhcCCCEEE
Confidence            7999999877644 455555555554443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.37  E-value=3.3e-12  Score=104.93  Aligned_cols=111  Identities=13%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~  197 (285)
                      .++.+++...++..+.+.++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++++...+   ++ ++++|+.
T Consensus         7 ~~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~   85 (178)
T 3hm2_A            7 QLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAP   85 (178)
T ss_dssp             CSHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTT
T ss_pred             cccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchH
Confidence            3456778888999998888899999999999999999987  6799999999999999999987653   68 8889986


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCC--cHHHHHHhccCCCcee
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIFS  245 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~--~~~i~~~l~~~g~~~~  245 (285)
                      +. +.          ...+.||+|+++.+++.  .-..+.+++.+|+.+.
T Consensus        86 ~~-~~----------~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~  124 (178)
T 3hm2_A           86 RA-FD----------DVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLV  124 (178)
T ss_dssp             GG-GG----------GCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEE
T ss_pred             hh-hh----------ccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEE
Confidence            52 21          12267999999987765  2223334455555553

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.37  E-value=2e-12  Score=112.88  Aligned_cols=92  Identities=17%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (285)
                      ......+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++....++++++.+|+.+.++    
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----  116 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF----  116 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCC----
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCC----
Confidence            566778888888888899999999999999999997 899999999999999999998765789999999998863    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                              ..+.||+|+++..++..
T Consensus       117 --------~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A          117 --------PENNFDLIYSRDAILAL  133 (266)
T ss_dssp             --------CTTCEEEEEEESCGGGS
T ss_pred             --------CCCcEEEEeHHHHHHhc
Confidence                    45789999998665544

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.37  E-value=3.1e-13  Score=114.06  Aligned_cols=95  Identities=15%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~  203 (285)
                      .++..+++.+.. .++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.|++++...+ +++++++|+.+ ++.+
T Consensus        16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~   94 (215)
T 4dzr_A           16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIE   94 (215)
T ss_dssp             HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHH
T ss_pred             HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhh
Confidence            455666666655 57789999999999999999998  5699999999999999999987655 78889999887 3211


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .    .   ...+.||+|++||||...
T Consensus        95 ~----~---~~~~~fD~i~~npp~~~~  114 (215)
T 4dzr_A           95 R----A---ERGRPWHAIVSNPPYIPT  114 (215)
T ss_dssp             H----H---HTTCCBSEEEECCCCCC-
T ss_pred             h----h---hccCcccEEEECCCCCCC
Confidence            0    0   124789999999999654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.35  E-value=1.2e-11  Score=102.19  Aligned_cols=100  Identities=15%  Similarity=0.210  Sum_probs=84.9

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~  200 (285)
                      .+.+.+...++..+...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...   ++++++++|+.+ +
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~   94 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-A   94 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-H
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-h
Confidence            677888999999999888999999999999999999988889999999999999999988755   479999999877 2


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~  235 (285)
                      +           ...+.||+|+++.+++....+++
T Consensus        95 ~-----------~~~~~~D~v~~~~~~~~~~~~l~  118 (192)
T 1l3i_A           95 L-----------CKIPDIDIAVVGGSGGELQEILR  118 (192)
T ss_dssp             H-----------TTSCCEEEEEESCCTTCHHHHHH
T ss_pred             c-----------ccCCCCCEEEECCchHHHHHHHH
Confidence            1           22257999999988766666554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.35  E-value=9.4e-12  Score=106.44  Aligned_cols=113  Identities=15%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~  198 (285)
                      ..+.....+...+...++.+|||||||+|.++..+++.   +++|+++|+++.+++.|++++...+   +++++++|+.+
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34655555555555567889999999999999999987   6899999999999999999987553   69999999976


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      ....     +..  ...+.||+|+.+.+......+++   +++.+|+.+
T Consensus       122 ~~~~-----~~~--~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~l  163 (223)
T 3duw_A          122 SLQQ-----IEN--EKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVI  163 (223)
T ss_dssp             HHHH-----HHH--TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEE
T ss_pred             HHHH-----HHh--cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEE
Confidence            4210     000  11257999999988655555443   455555544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.35  E-value=4.8e-12  Score=110.19  Aligned_cols=91  Identities=13%  Similarity=0.214  Sum_probs=78.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~  199 (285)
                      ...+..+..++..+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|++++...   ++++++++|+.+.
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   98 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence            345678888999998888999999999999999999987 789999999999999999998754   3799999999987


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      ++             .+.||+|+++...
T Consensus        99 ~~-------------~~~fD~V~~~~~~  113 (256)
T 1nkv_A           99 VA-------------NEKCDVAACVGAT  113 (256)
T ss_dssp             CC-------------SSCEEEEEEESCG
T ss_pred             Cc-------------CCCCCEEEECCCh
Confidence            52             4679999986543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.35  E-value=1.2e-12  Score=111.35  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (285)
                      ......+...+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...++++++++|+.+.+      
T Consensus        37 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------  110 (216)
T 3ofk_A           37 ERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS------  110 (216)
T ss_dssp             HHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC------
T ss_pred             HHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC------
Confidence            34445555566666778999999999999999999888999999999999999999987779999999999875      


Q ss_pred             hHHhhhcCCCCceEEEEcCCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                             ..+.||+|+++..++
T Consensus       111 -------~~~~fD~v~~~~~l~  125 (216)
T 3ofk_A          111 -------TAELFDLIVVAEVLY  125 (216)
T ss_dssp             -------CSCCEEEEEEESCGG
T ss_pred             -------CCCCccEEEEccHHH
Confidence                   247799999986654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.35  E-value=1.7e-12  Score=121.21  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhc-----------CCCeEE
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS-----------IDQLKV  191 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~-----------~~~v~~  191 (285)
                      +.+..+..+++.+.+.++.+|||||||+|.+++.+|.. ++ +|+|||+++.+++.|+++.+.           .++|++
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            44778899999999999999999999999999999875 55 599999999999999876421           258999


Q ss_pred             EEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       192 ~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      ++||+.+.++.+.          -..+|+|++|+++..
T Consensus       237 i~GD~~~lp~~d~----------~~~aDVVf~Nn~~F~  264 (438)
T 3uwp_A          237 ERGDFLSEEWRER----------IANTSVIFVNNFAFG  264 (438)
T ss_dssp             EECCTTSHHHHHH----------HHTCSEEEECCTTCC
T ss_pred             EECcccCCccccc----------cCCccEEEEcccccC
Confidence            9999999875321          135899999988754

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.34  E-value=9.2e-12  Score=107.41  Aligned_cols=112  Identities=15%  Similarity=0.199  Sum_probs=80.2

Q ss_pred             ccCCHHHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC----CCeEEE
Q 023240          123 YMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI----DQLKVL  192 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~----~~v~~~  192 (285)
                      +...+.....+...+...   ++.+|||||||+|+++..+++.   +++|+++|+++++++.|+++++..    ++++++
T Consensus        35 p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~  114 (221)
T 3dr5_A           35 PAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL  114 (221)
T ss_dssp             CCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence            344555544444433333   3449999999999999999985   679999999999999999998764    379999


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      ++|+.+....          ...++||+|+.+.+.......++   +++.+|+.+
T Consensus       115 ~gda~~~l~~----------~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  159 (221)
T 3dr5_A          115 LSRPLDVMSR----------LANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGAL  159 (221)
T ss_dssp             CSCHHHHGGG----------SCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEE
T ss_pred             EcCHHHHHHH----------hcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEE
Confidence            9999876321          12478999999987665554443   344444444

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.34  E-value=5.4e-12  Score=111.98  Aligned_cols=90  Identities=21%  Similarity=0.397  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccch
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR  202 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~  202 (285)
                      +.++..++..+. .++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|++++..++  +++++++|+.+..  
T Consensus        96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~--  172 (276)
T 2b3t_A           96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL--  172 (276)
T ss_dssp             HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG--
T ss_pred             HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc--
Confidence            445666777665 56789999999999999999976  6799999999999999999987543  7999999997741  


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                                 ..+.||+|++||||...
T Consensus       173 -----------~~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          173 -----------AGQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             -----------TTCCEEEEEECCCCBCT
T ss_pred             -----------ccCCccEEEECCCCCCc
Confidence                       24679999999999654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.34  E-value=3.4e-12  Score=116.86  Aligned_cols=95  Identities=20%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccc
Q 023240          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKC  199 (285)
Q Consensus       125 ~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~  199 (285)
                      ........+.+.+. ..++.+|||+|||+|.+++.++..+++|++||+|+.+++.|++|++.++    +++++++|+.+.
T Consensus       136 dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~  215 (332)
T 2igt_A          136 EQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF  215 (332)
T ss_dssp             GGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH
Confidence            34445555666654 4467899999999999999999988899999999999999999987543    499999999875


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      ...     ..   .....||+||+|||+
T Consensus       216 l~~-----~~---~~~~~fD~Ii~dPP~  235 (332)
T 2igt_A          216 IQR-----EE---RRGSTYDIILTDPPK  235 (332)
T ss_dssp             HHH-----HH---HHTCCBSEEEECCCS
T ss_pred             HHH-----HH---hcCCCceEEEECCcc
Confidence            311     00   124689999999995

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.33  E-value=5.4e-12  Score=108.18  Aligned_cols=110  Identities=16%  Similarity=0.263  Sum_probs=86.5

Q ss_pred             ccCCHHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhc-------CCCeE
Q 023240          123 YMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-------IDQLK  190 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~-------~~~v~  190 (285)
                      .+..+.....+++.+.  +.++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.|++++..       .++++
T Consensus        57 ~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~  136 (226)
T 1i1n_A           57 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ  136 (226)
T ss_dssp             EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred             eecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence            5667888888888886  677899999999999999999986 4  6999999999999999998765       34899


Q ss_pred             EEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC-cHHHHHHhccCCCce
Q 023240          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPMGDIF  244 (285)
Q Consensus       191 ~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~-~~~i~~~l~~~g~~~  244 (285)
                      ++.+|+.+.+.            ..+.||+|+++.+... ...+.+.|.++|.++
T Consensus       137 ~~~~d~~~~~~------------~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv  179 (226)
T 1i1n_A          137 LVVGDGRMGYA------------EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLI  179 (226)
T ss_dssp             EEESCGGGCCG------------GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEE
T ss_pred             EEECCcccCcc------------cCCCcCEEEECCchHHHHHHHHHhcCCCcEEE
Confidence            99999986542            2367999999977644 455555555544433

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.33  E-value=3.3e-12  Score=108.87  Aligned_cols=92  Identities=16%  Similarity=0.269  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC-------CeEEEEcc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-------QLKVLQED  195 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~-------~v~~~~gD  195 (285)
                      ..+.....+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+++.+++.|++++...+       +++++.+|
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS   92 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence            345556677777766678899999999999999999875  699999999999999999986542       89999999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +...+.            ..++||+|+++-.++
T Consensus        93 ~~~~~~------------~~~~fD~V~~~~~l~  113 (219)
T 3jwg_A           93 LVYRDK------------RFSGYDAATVIEVIE  113 (219)
T ss_dssp             SSSCCG------------GGTTCSEEEEESCGG
T ss_pred             cccccc------------ccCCCCEEEEHHHHH
Confidence            976653            346799999876543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.33  E-value=3.9e-12  Score=111.40  Aligned_cols=87  Identities=20%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++++...  ++++++.+|+.++++      
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~------   99 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF------   99 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS------
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC------
Confidence            456777777778899999999999999999998889999999999999999988654  479999999998874      


Q ss_pred             HHhhhcCCCCceEEEEcCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                            ..+.||+|+++..++
T Consensus       100 ------~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A          100 ------TDERFHIVTCRIAAH  114 (260)
T ss_dssp             ------CTTCEEEEEEESCGG
T ss_pred             ------CCCCEEEEEEhhhhH
Confidence                  346899999986553

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.33  E-value=5.6e-12  Score=110.16  Aligned_cols=83  Identities=18%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcC-
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS-  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~-  214 (285)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.|++++..++   +++++++|+.+.-...     +   .. 
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~---~~~  136 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA-----L---KEE  136 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT-----S---TTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhh-----h---hcc
Confidence            4679999999999999988876  6899999999999999999987653   5999999987621000     0   11 


Q ss_pred             -CCCceEEEEcCCCCCcH
Q 023240          215 -SSGFAKVVANIPFNIST  231 (285)
Q Consensus       215 -~~~~D~Vv~n~P~~~~~  231 (285)
                       ...||+|++||||....
T Consensus       137 ~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          137 SEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CSCCBSEEEECCCCC---
T ss_pred             cCCcccEEEECCCCccCc
Confidence             25799999999997543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.33  E-value=2.9e-12  Score=113.23  Aligned_cols=103  Identities=12%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhh
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~  204 (285)
                      -++++.+.+.+...  .+.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|++    .++++++++|+.++++   
T Consensus        25 yp~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e~~~~---   95 (257)
T 4hg2_A           25 YPRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR----HPRVTYAVAPAEDTGL---   95 (257)
T ss_dssp             CCHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC----CTTEEEEECCTTCCCC---
T ss_pred             cHHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh----cCCceeehhhhhhhcc---
Confidence            35777777777654  45699999999999999999999999999999999988764    3689999999999885   


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCCcH-----HHHHHhccCCCcee
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIFS  245 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~~-----~i~~~l~~~g~~~~  245 (285)
                               +.++||+|+++-.+++..     ..+.+++.+|+.+.
T Consensus        96 ---------~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~  132 (257)
T 4hg2_A           96 ---------PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFA  132 (257)
T ss_dssp             ---------CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEE
Confidence                     457899999987665543     12345566666553

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.32  E-value=2.3e-12  Score=120.64  Aligned_cols=94  Identities=22%  Similarity=0.334  Sum_probs=76.1

Q ss_pred             CccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEE
Q 023240          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKV  191 (285)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~  191 (285)
                      .++..|+ |.+++.+++.|++.+...++.+|||+|||+|.++..+++.   +.+++|+|+++.+++.|       .++++
T Consensus        14 ~~~~~g~-~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~~   85 (421)
T 2ih2_A           14 APRSLGR-VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEG   85 (421)
T ss_dssp             --------CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEE
T ss_pred             hcccCce-EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCcE
Confidence            4455677 8899999999999998766779999999999999999875   47999999999999877       47899


Q ss_pred             EEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       192 ~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +++|+.+..             ..+.||+|++||||..
T Consensus        86 ~~~D~~~~~-------------~~~~fD~Ii~NPPy~~  110 (421)
T 2ih2_A           86 ILADFLLWE-------------PGEAFDLILGNPPYGI  110 (421)
T ss_dssp             EESCGGGCC-------------CSSCEEEEEECCCCCC
T ss_pred             EeCChhhcC-------------ccCCCCEEEECcCccC
Confidence            999998863             2367999999999953

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.32  E-value=2.5e-11  Score=106.19  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~  199 (285)
                      .+.....+...+...++.+|||||||+|+.+..+++.   +.+|+++|+++.+++.|+++++..   ++++++.+|+.+.
T Consensus        48 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  127 (248)
T 3tfw_A           48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS  127 (248)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            4555555555445557889999999999999999987   679999999999999999998755   3799999999874


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH---HHhccCCCcee
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFS  245 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~~  245 (285)
                      ....         ...+.||+|+++.+.....+.+   .+++.+|+.+.
T Consensus       128 l~~~---------~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv  167 (248)
T 3tfw_A          128 LESL---------GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLII  167 (248)
T ss_dssp             HHTC---------CSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEE
T ss_pred             HHhc---------CCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEE
Confidence            2100         1235899999988765544444   34555666553

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.32  E-value=8e-12  Score=109.05  Aligned_cols=106  Identities=22%  Similarity=0.331  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~  198 (285)
                      ..+.....++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++++..+   +++++.+|+.+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            44666778888999889999999999999999999988   6799999999999999999987542   49999999986


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCC--CcHHHHHHhccCCCc
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDI  243 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~--~~~~i~~~l~~~g~~  243 (285)
                      .             .....||+|++|+|..  ....+.+.|.++|.+
T Consensus       157 ~-------------~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  190 (255)
T 3mb5_A          157 G-------------IEEENVDHVILDLPQPERVVEHAAKALKPGGFF  190 (255)
T ss_dssp             C-------------CCCCSEEEEEECSSCGGGGHHHHHHHEEEEEEE
T ss_pred             c-------------cCCCCcCEEEECCCCHHHHHHHHHHHcCCCCEE
Confidence            4             2346799999998864  334444444444433

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.32  E-value=9e-12  Score=106.11  Aligned_cols=91  Identities=16%  Similarity=0.307  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC-------CeEEEEccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDF  196 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~-------~v~~~~gD~  196 (285)
                      .+.....+++.+...++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|++++...+       +++++.+|+
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (217)
T 3jwh_A           14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL   93 (217)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence            34556677777776778899999999999999999874  699999999999999999986543       799999998


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ...+.            ..++||+|+++-.++
T Consensus        94 ~~~~~------------~~~~fD~v~~~~~l~  113 (217)
T 3jwh_A           94 TYQDK------------RFHGYDAATVIEVIE  113 (217)
T ss_dssp             TSCCG------------GGCSCSEEEEESCGG
T ss_pred             ccccc------------cCCCcCEEeeHHHHH
Confidence            76542            336799999986654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.31  E-value=7.4e-12  Score=111.57  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~  203 (285)
                      .....+...+  .++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|++.++   +++++++|+.+.+   
T Consensus       114 ~~~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~---  188 (278)
T 2frn_A          114 KERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP---  188 (278)
T ss_dssp             HHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC---
T ss_pred             HHHHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc---
Confidence            4445555544  3688999999999999999999876 69999999999999999988653   5999999999875   


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhccCCCcee
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPMGDIFS  245 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~~~g~~~~  245 (285)
                                ....||+|++|||+...  -+.+.+++.+|+.+.
T Consensus       189 ----------~~~~fD~Vi~~~p~~~~~~l~~~~~~LkpgG~l~  222 (278)
T 2frn_A          189 ----------GENIADRILMGYVVRTHEFIPKALSIAKDGAIIH  222 (278)
T ss_dssp             ----------CCSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEE
T ss_pred             ----------ccCCccEEEECCchhHHHHHHHHHHHCCCCeEEE
Confidence                      24679999999997532  222334444445443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.31  E-value=2.6e-11  Score=108.73  Aligned_cols=87  Identities=15%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~  204 (285)
                      .+..+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|++++...+   +++++.+|+.++     
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----  134 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----  134 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----
Confidence            4566778888888899999999999999999998 8999999999999999999987653   799999999775     


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                                .+.||+|+++..++..
T Consensus       135 ----------~~~fD~v~~~~~~~~~  150 (302)
T 3hem_A          135 ----------DEPVDRIVSLGAFEHF  150 (302)
T ss_dssp             ----------CCCCSEEEEESCGGGT
T ss_pred             ----------CCCccEEEEcchHHhc
Confidence                      2679999998665443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.31  E-value=3.1e-12  Score=114.20  Aligned_cols=84  Identities=19%  Similarity=0.237  Sum_probs=71.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~  206 (285)
                      .++.+.+  .+|.+|||+|||+|.+++.+|..+ ++|+++|+|+.+++.+++|++.++   +++++++|+.+++      
T Consensus       117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~------  188 (278)
T 3k6r_A          117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------  188 (278)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------
T ss_pred             HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc------
Confidence            3444444  478999999999999999999886 599999999999999999998764   7999999998874      


Q ss_pred             hHHhhhcCCCCceEEEEcCCCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                             ..+.||.|++|+|+..
T Consensus       189 -------~~~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          189 -------GENIADRILMGYVVRT  204 (278)
T ss_dssp             -------CCSCEEEEEECCCSSG
T ss_pred             -------cccCCCEEEECCCCcH
Confidence                   4577999999988753

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.31  E-value=7.3e-12  Score=105.84  Aligned_cols=90  Identities=19%  Similarity=0.324  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (285)
                      +.+...+++.+...++ +|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++...   ++++++++|+.++++ 
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-  107 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI-  107 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS-
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC-
Confidence            4567778888877666 9999999999999999987 679999999999999999998764   379999999998763 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                 ..+.||+|+++..++.
T Consensus       108 -----------~~~~~D~v~~~~~l~~  123 (219)
T 3dlc_A          108 -----------EDNYADLIVSRGSVFF  123 (219)
T ss_dssp             -----------CTTCEEEEEEESCGGG
T ss_pred             -----------CcccccEEEECchHhh
Confidence                       3478999999876543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.31  E-value=1.6e-11  Score=105.94  Aligned_cols=104  Identities=14%  Similarity=0.155  Sum_probs=84.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~  197 (285)
                      ++..+.....+...+...++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++++...+   +++++.+|+.
T Consensus        36 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           36 PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            5678888888888887778899999999999999999987  6899999999999999999987653   6999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~  235 (285)
                      +.....         ...+.||+|+++.+......+++
T Consensus       116 ~~~~~~---------~~~~~fD~I~~~~~~~~~~~~l~  144 (233)
T 2gpy_A          116 QLGEKL---------ELYPLFDVLFIDAAKGQYRRFFD  144 (233)
T ss_dssp             GSHHHH---------TTSCCEEEEEEEGGGSCHHHHHH
T ss_pred             HHHHhc---------ccCCCccEEEECCCHHHHHHHHH
Confidence            742100         11467999999988765555554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.31  E-value=6.4e-12  Score=110.50  Aligned_cols=107  Identities=18%  Similarity=0.270  Sum_probs=75.8

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEE
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVL  192 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~  192 (285)
                      ++...||.............+... ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..++ .++++
T Consensus        94 ~p~~~fgtg~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~  172 (254)
T 2nxc_A           94 EPGMAFGTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFL  172 (254)
T ss_dssp             CCC-----CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred             CCCccccCCCCHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence            445556554333333333333333 4567899999999999999999988899999999999999999987654 38999


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~  234 (285)
                      .+|+.+. +            ..+.||+|++|++.+....++
T Consensus       173 ~~d~~~~-~------------~~~~fD~Vv~n~~~~~~~~~l  201 (254)
T 2nxc_A          173 EGSLEAA-L------------PFGPFDLLVANLYAELHAALA  201 (254)
T ss_dssp             ESCHHHH-G------------GGCCEEEEEEECCHHHHHHHH
T ss_pred             ECChhhc-C------------cCCCCCEEEECCcHHHHHHHH
Confidence            9998763 1            235799999998876544444

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.30  E-value=1.1e-11  Score=104.76  Aligned_cols=83  Identities=24%  Similarity=0.292  Sum_probs=69.9

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++...+  +++++.+|+.+..              .
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------------~  123 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--------------D  123 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--------------C
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--------------C
Confidence            45678999999999999999998854 99999999999999999987654  5999999997742              3


Q ss_pred             CCceEEEEcCCCCCcHHHHH
Q 023240          216 SGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       216 ~~~D~Vv~n~P~~~~~~i~~  235 (285)
                      +.||+|++|++++....+++
T Consensus       124 ~~fD~i~~~~~~~~~~~~l~  143 (205)
T 3grz_A          124 GKFDLIVANILAEILLDLIP  143 (205)
T ss_dssp             SCEEEEEEESCHHHHHHHGG
T ss_pred             CCceEEEECCcHHHHHHHHH
Confidence            68999999999876555544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.30  E-value=1e-11  Score=105.61  Aligned_cols=84  Identities=29%  Similarity=0.481  Sum_probs=71.4

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      ..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++.  ++++++.+|+.+++.         
T Consensus        35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~~~---------  103 (220)
T 3hnr_A           35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFEV---------  103 (220)
T ss_dssp             HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSCCC---------
T ss_pred             HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhcCC---------
Confidence            345555555578899999999999999999999999999999999999999875  589999999999863         


Q ss_pred             hhcCCCCceEEEEcCCCCC
Q 023240          211 RRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~~  229 (285)
                         . +.||+|+++..++.
T Consensus       104 ---~-~~fD~v~~~~~l~~  118 (220)
T 3hnr_A          104 ---P-TSIDTIVSTYAFHH  118 (220)
T ss_dssp             ---C-SCCSEEEEESCGGG
T ss_pred             ---C-CCeEEEEECcchhc
Confidence               3 78999999866543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.30  E-value=1.8e-11  Score=114.53  Aligned_cols=95  Identities=12%  Similarity=0.177  Sum_probs=81.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---------------------------------------
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---------------------------------------  163 (285)
                      -.+.+.++..|+....+.++..|||++||+|.+++.+|..+                                       
T Consensus       183 Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  262 (393)
T 3k0b_A          183 APIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ  262 (393)
T ss_dssp             CSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence            44568888999999999888999999999999998887652                                       


Q ss_pred             -CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          164 -ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       164 -~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                       .+|+|+|+|+.+++.|+.|+..++   +++++++|+.+++.             ...||+||+||||...
T Consensus       263 ~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------------~~~fD~Iv~NPPYg~r  320 (393)
T 3k0b_A          263 PLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------------EDEYGVVVANPPYGER  320 (393)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------------CCCSCEEEECCCCCCS
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------------CCCCCEEEECCCCccc
Confidence             359999999999999999998664   59999999999752             3579999999999754

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.30  E-value=6.1e-11  Score=103.85  Aligned_cols=118  Identities=11%  Similarity=0.109  Sum_probs=83.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      ....+.....+...+...++.+|||||||+|++++.+++.   +++|+++|+++.+++.|+++++..+   +++++.+|+
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            4456666665555555557789999999999999999986   6899999999999999999987653   799999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH---HHhccCCCcee
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFS  245 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~~  245 (285)
                      .+....     +...-...+.||+|+++.+.......+   .+++.+|+.+.
T Consensus       141 ~~~l~~-----l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv  187 (247)
T 1sui_A          141 LPVLDE-----MIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG  187 (247)
T ss_dssp             HHHHHH-----HHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEE
T ss_pred             HHHHHH-----HHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEE
Confidence            774210     000000146899999987654444433   34555566553

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.30  E-value=1e-11  Score=113.91  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             cccCCcccCCHHHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHhC-------CEEEEEeCCHHHHHHHHHHhhc
Q 023240          117 KSLGQHYMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       117 ~~~g~~~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~~-------~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      ...|+ ++++..++..|...+    ...++.+|||+|||+|.++..+++..       .+++|+|+++.+++.|+.++..
T Consensus       103 ~~~g~-~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~  181 (344)
T 2f8l_A          103 IQVNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL  181 (344)
T ss_dssp             CCGGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             cccCc-CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh
Confidence            44566 568887766544443    34466799999999999999888752       6899999999999999998764


Q ss_pred             CC-CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          186 ID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       186 ~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      .+ ++.++++|+....             ....||+|++||||+.
T Consensus       182 ~g~~~~i~~~D~l~~~-------------~~~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          182 QRQKMTLLHQDGLANL-------------LVDPVDVVISDLPVGY  213 (344)
T ss_dssp             HTCCCEEEESCTTSCC-------------CCCCEEEEEEECCCSE
T ss_pred             CCCCceEEECCCCCcc-------------ccCCccEEEECCCCCC
Confidence            43 7899999987742             3467999999999753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.29  E-value=9.2e-12  Score=110.68  Aligned_cols=96  Identities=17%  Similarity=0.155  Sum_probs=75.1

Q ss_pred             CCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcc
Q 023240          120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQED  195 (285)
Q Consensus       120 g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD  195 (285)
                      +..|..+......+.....+.++.+|||+|||+|.+++.+++.+  .+|+|+|+++.+++.|++|++.++  +++++++|
T Consensus        98 ~~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d  177 (272)
T 3a27_A           98 AKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILAD  177 (272)
T ss_dssp             TTSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESC
T ss_pred             hhEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            33344444333333334445678899999999999999999884  499999999999999999998764  89999999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +.+.+            . ...||+|++|||+.
T Consensus       178 ~~~~~------------~-~~~~D~Vi~d~p~~  197 (272)
T 3a27_A          178 NRDVE------------L-KDVADRVIMGYVHK  197 (272)
T ss_dssp             GGGCC------------C-TTCEEEEEECCCSS
T ss_pred             hHHcC------------c-cCCceEEEECCccc
Confidence            98873            2 35799999999973

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.29  E-value=9.4e-12  Score=106.68  Aligned_cols=116  Identities=13%  Similarity=0.158  Sum_probs=83.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      ....+.....+...+...++.+|||||||+|.++..+++.   +++|+++|+++.+++.|+++++..+   +++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            4556666666666666667889999999999999999984   6799999999999999999987543   699999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH---HHH--HhccCCCce
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIK--QLLPMGDIF  244 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~---i~~--~l~~~g~~~  244 (285)
                      .+.....      ......+.||+|+.+.+.....+   .++  +++.+|+.+
T Consensus       120 ~~~l~~~------~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~l  166 (221)
T 3u81_A          120 QDLIPQL------KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVL  166 (221)
T ss_dssp             HHHGGGT------TTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCEE
T ss_pred             HHHHHHH------HHhcCCCceEEEEEcCCcccchHHHHHHHhccccCCCeEE
Confidence            7642100      00011267999999987654443   233  345555554

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.29  E-value=1.4e-11  Score=106.79  Aligned_cols=90  Identities=12%  Similarity=0.167  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchh
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~  203 (285)
                      +......++..+.+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...  ++++++.+|+.++++  
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--   83 (239)
T 1xxl_A            6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--   83 (239)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--
T ss_pred             cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--
Confidence            3556677888889989999999999999999999998889999999999999999987643  479999999988763  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                                ..+.||+|+++..+
T Consensus        84 ----------~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           84 ----------PDDSFDIITCRYAA   97 (239)
T ss_dssp             ----------CTTCEEEEEEESCG
T ss_pred             ----------CCCcEEEEEECCch
Confidence                      34689999998554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.29  E-value=1.3e-11  Score=115.04  Aligned_cols=94  Identities=12%  Similarity=0.150  Sum_probs=80.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---------------------------------------
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---------------------------------------  163 (285)
                      -.+.+.++..|+....+.++..+||++||+|.+.+..|..+                                       
T Consensus       176 Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  255 (384)
T 3ldg_A          176 APIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI  255 (384)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence            34567888899999999888999999999999998887642                                       


Q ss_pred             -CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          164 -ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       164 -~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                       .+|+|+|+|+.+++.|++|++.++   .++++++|+.+++.             ...||+||+||||..
T Consensus       256 ~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------------~~~fD~Iv~NPPYG~  312 (384)
T 3ldg_A          256 QLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------------NKINGVLISNPPYGE  312 (384)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------------CCCSCEEEECCCCTT
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------------cCCcCEEEECCchhh
Confidence             359999999999999999998664   69999999999752             357999999999974

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.29  E-value=1.6e-11  Score=107.93  Aligned_cols=94  Identities=12%  Similarity=0.116  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccc
Q 023240          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (285)
Q Consensus       125 ~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~  199 (285)
                      ........++..+. +.++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.|++++...   ++++++.+|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  108 (267)
T 3kkz_A           29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL  108 (267)
T ss_dssp             CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC
Confidence            44666777777776 5678899999999999999999984 59999999999999999998765   3699999999887


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      ++            ..+.||+|+++.+++..
T Consensus       109 ~~------------~~~~fD~i~~~~~~~~~  127 (267)
T 3kkz_A          109 PF------------RNEELDLIWSEGAIYNI  127 (267)
T ss_dssp             CC------------CTTCEEEEEESSCGGGT
T ss_pred             CC------------CCCCEEEEEEcCCceec
Confidence            63            35789999998775443

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.29  E-value=1.4e-11  Score=107.23  Aligned_cols=93  Identities=12%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHh-cCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccc
Q 023240          125 LNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (285)
Q Consensus       125 ~~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~  199 (285)
                      ..+.....++..+ .+.++.+|||||||+|..+..+++.+ .+|+|+|+++.+++.|++++...+   +++++++|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  108 (257)
T 3f4k_A           29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL  108 (257)
T ss_dssp             CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            3466677777776 45677899999999999999999984 499999999999999999987653   599999999887


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      ++            ..+.||+|+++..++.
T Consensus       109 ~~------------~~~~fD~v~~~~~l~~  126 (257)
T 3f4k_A          109 PF------------QNEELDLIWSEGAIYN  126 (257)
T ss_dssp             SS------------CTTCEEEEEEESCSCC
T ss_pred             CC------------CCCCEEEEEecChHhh
Confidence            63            3478999999866554

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.29  E-value=3.4e-11  Score=103.54  Aligned_cols=102  Identities=15%  Similarity=0.068  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccc-cccchhhhh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV-KCHIRSHML  206 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~-~~~~~~~~~  206 (285)
                      .++..++.... .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++   .++++++++|+. .+++     
T Consensus        36 ~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~~~~~~-----  106 (226)
T 3m33_A           36 LTFDLWLSRLL-TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---APHADVYEWNGKGELPA-----  106 (226)
T ss_dssp             HHHHHHHHHHC-CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---CTTSEEEECCSCSSCCT-----
T ss_pred             HHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---CCCceEEEcchhhccCC-----
Confidence            34444444332 4678999999999999999999999999999999999999998   358999999995 4542     


Q ss_pred             hHHhhhcCCCCceEEEEcCCCC-CcHHHHHHhccCCCce
Q 023240          207 SLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIF  244 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~-~~~~i~~~l~~~g~~~  244 (285)
                            .....||+|++++... ....+.+.|.++|.++
T Consensus       107 ------~~~~~fD~v~~~~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          107 ------GLGAPFGLIVSRRGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             ------TCCCCEEEEEEESCCSGGGGGHHHHEEEEEEEE
T ss_pred             ------cCCCCEEEEEeCCCHHHHHHHHHHHcCCCcEEE
Confidence                  1157899999985433 3344445555554444

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.29  E-value=1.5e-11  Score=116.64  Aligned_cols=101  Identities=18%  Similarity=0.238  Sum_probs=84.7

Q ss_pred             CccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---------------CCEEEEEeCCHHHHHHH
Q 023240          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGLV  179 (285)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---------------~~~V~giD~~~~~v~~a  179 (285)
                      .++..|+ |++++.+++.|++.+.+.++.+|||+|||+|.+...+++.               ..+++|+|+++.+++.|
T Consensus       146 ~~~~~G~-fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA  224 (445)
T 2okc_A          146 KKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  224 (445)
T ss_dssp             TTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             ccccCCc-ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence            3445666 8899999999999999888889999999999999888763               36799999999999999


Q ss_pred             HHHhhcCC----CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          180 RERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       180 ~~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +.++...+    ++.+.++|+...+.             ...||+|++||||..
T Consensus       225 ~~nl~l~g~~~~~~~i~~gD~l~~~~-------------~~~fD~Iv~NPPf~~  265 (445)
T 2okc_A          225 SMNLYLHGIGTDRSPIVCEDSLEKEP-------------STLVDVILANPPFGT  265 (445)
T ss_dssp             HHHHHHTTCCSSCCSEEECCTTTSCC-------------SSCEEEEEECCCSSC
T ss_pred             HHHHHHhCCCcCCCCEeeCCCCCCcc-------------cCCcCEEEECCCCCC
Confidence            99876432    67899999987642             247999999999975

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.29  E-value=1.3e-12  Score=112.50  Aligned_cols=79  Identities=23%  Similarity=0.273  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.+|||||||+|.++..+|+.  +..|+|||+++.+++.|+++++..  +|++++++|+.++...     .    ...+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~-----~----~~~~  104 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHK-----M----IPDN  104 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHH-----H----SCTT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-----H----cCCC
Confidence            5789999999999999999987  568999999999999999998765  3899999999874100     0    2457


Q ss_pred             CceEEEEc--CCCC
Q 023240          217 GFAKVVAN--IPFN  228 (285)
Q Consensus       217 ~~D~Vv~n--~P~~  228 (285)
                      .+|.|+++  .|+.
T Consensus       105 ~~d~v~~~~~~p~~  118 (218)
T 3dxy_A          105 SLRMVQLFFPDPWH  118 (218)
T ss_dssp             CEEEEEEESCCCCC
T ss_pred             ChheEEEeCCCCcc
Confidence            89999998  5553

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.29  E-value=2.5e-11  Score=105.74  Aligned_cols=106  Identities=16%  Similarity=0.202  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~  198 (285)
                      ..+..+..++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++++..   ++++++.+|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~  159 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE  159 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence            34556678888888888999999999999999999987   579999999999999999998654   589999999988


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCC--CcHHHHHHhccCCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGD  242 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~--~~~~i~~~l~~~g~  242 (285)
                      .++            ..+.||+|++++|..  ....+.+.|.++|.
T Consensus       160 ~~~------------~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~  193 (258)
T 2pwy_A          160 AEL------------EEAAYDGVALDLMEPWKVLEKAALALKPDRF  193 (258)
T ss_dssp             CCC------------CTTCEEEEEEESSCGGGGHHHHHHHEEEEEE
T ss_pred             cCC------------CCCCcCEEEECCcCHHHHHHHHHHhCCCCCE
Confidence            753            336799999998743  22333344444433

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.29  E-value=1e-11  Score=109.98  Aligned_cols=91  Identities=20%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (285)
                      +..++.++..+.+.++.+|||||||+|.++..+++.+++|+|+|+|+.|++.|++++...    ++.+|+.+.+.... .
T Consensus        31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~-~  105 (261)
T 3iv6_A           31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIP-K  105 (261)
T ss_dssp             CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCC-G
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccc-c
Confidence            456678888888888999999999999999999999999999999999999999998643    34555555432000 0


Q ss_pred             hHHhhhcCCCCceEEEEcCCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                            ...+.||+|+++..++
T Consensus       106 ------~~~~~fD~Vv~~~~l~  121 (261)
T 3iv6_A          106 ------ELAGHFDFVLNDRLIN  121 (261)
T ss_dssp             ------GGTTCCSEEEEESCGG
T ss_pred             ------ccCCCccEEEEhhhhH
Confidence                  1246799999997764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=1.2e-11  Score=108.58  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=78.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (285)
                      ....+.+...+++.+...++.+|||||||+|..+..+++.+.+|+|+|+++.+++.|+++.    +++++.+|+.++++ 
T Consensus        16 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~~~-   90 (261)
T 3ege_A           16 RVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP----QVEWFTGYAENLAL-   90 (261)
T ss_dssp             BCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT----TEEEECCCTTSCCS-
T ss_pred             ccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc----CCEEEECchhhCCC-
Confidence            4456788899999998888899999999999999999998899999999999999887664    89999999998774 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                 ..+.||+|+++..++
T Consensus        91 -----------~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           91 -----------PDKSVDGVISILAIH  105 (261)
T ss_dssp             -----------CTTCBSEEEEESCGG
T ss_pred             -----------CCCCEeEEEEcchHh
Confidence                       347899999987653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.28  E-value=7.4e-12  Score=108.32  Aligned_cols=84  Identities=20%  Similarity=0.223  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccc--cch
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC--HIR  202 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~--~~~  202 (285)
                      ..++..+...+ ..++.+|||||||+|.++..+++.+. +|+|+|+++.|++.|+++....+ +++++++|+.++  ++ 
T Consensus        47 ~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-  124 (236)
T 1zx0_A           47 TPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-  124 (236)
T ss_dssp             HHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-
T ss_pred             HHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhccc-
Confidence            44455555544 44678999999999999999987654 89999999999999999987654 799999999887  43 


Q ss_pred             hhhhhHHhhhcCCCCceEEEE
Q 023240          203 SHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                                 ..++||+|++
T Consensus       125 -----------~~~~fD~V~~  134 (236)
T 1zx0_A          125 -----------PDGHFDGILY  134 (236)
T ss_dssp             -----------CTTCEEEEEE
T ss_pred             -----------CCCceEEEEE
Confidence                       3478999999

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.28  E-value=5.4e-12  Score=110.23  Aligned_cols=95  Identities=20%  Similarity=0.181  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC---C---C---------
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---D---Q---------  188 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~---~---~---------  188 (285)
                      +++..++..+...++.+|||+|||+|.++..++..    +.+|+|+|+|+.+++.|++++...   +   +         
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~  117 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE  117 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence            34444555444445679999999999999999876    569999999999999999887654   2   2         


Q ss_pred             ----------------eE-------------EEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          189 ----------------LK-------------VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       189 ----------------v~-------------~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                      ++             ++++|+.+.....    ..   .....||+|++||||..
T Consensus       118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~---~~~~~fD~Iv~npp~~~  180 (250)
T 1o9g_A          118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALS----AV---LAGSAPDVVLTDLPYGE  180 (250)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHH----HH---HTTCCCSEEEEECCGGG
T ss_pred             hcccccchhhhhhhhhhhhhccccccccccceeecccccccccc----cc---cCCCCceEEEeCCCeec
Confidence                            66             9999987742100    00   02347999999999853

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.28  E-value=2.3e-11  Score=101.51  Aligned_cols=84  Identities=18%  Similarity=0.199  Sum_probs=71.1

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      .+++.+...++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|++++...  ++++++.+|+.+.++        
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------   94 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF--------   94 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC--------
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC--------
Confidence            4455566667889999999999999999999899999999999999999987643  379999999988752        


Q ss_pred             hhhcCCCCceEEEEcCCCC
Q 023240          210 ERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~  228 (285)
                           .+.||+|+++.+++
T Consensus        95 -----~~~~D~v~~~~~l~  108 (199)
T 2xvm_A           95 -----DRQYDFILSTVVLM  108 (199)
T ss_dssp             -----CCCEEEEEEESCGG
T ss_pred             -----CCCceEEEEcchhh
Confidence                 46799999987654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.28  E-value=2.4e-11  Score=103.52  Aligned_cols=77  Identities=13%  Similarity=0.234  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.|++++...  ++++++++|+.+++-.          ...+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------~~~~  110 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY----------FEDG  110 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----------SCTT
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----------cCCC
Confidence            5789999999999999999987  579999999999999999998654  4899999999886410          1346


Q ss_pred             CceEEEEcCCC
Q 023240          217 GFAKVVANIPF  227 (285)
Q Consensus       217 ~~D~Vv~n~P~  227 (285)
                      .||.|++|+|.
T Consensus       111 ~~D~i~~~~~~  121 (214)
T 1yzh_A          111 EIDRLYLNFSD  121 (214)
T ss_dssp             CCSEEEEESCC
T ss_pred             CCCEEEEECCC
Confidence            79999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.28  E-value=2e-11  Score=106.20  Aligned_cols=87  Identities=13%  Similarity=0.128  Sum_probs=72.4

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+.+++|.+|||+|||+|+++..+|+.   .++|+|+|++++|++.++++.+..+|+..+.+|+.+.....         
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~---------  142 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYR---------  142 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGT---------
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccc---------
Confidence            355789999999999999999999986   46999999999999999999888789999999987643211         


Q ss_pred             cCCCCceEEEEcCCCCCcH
Q 023240          213 KSSSGFAKVVANIPFNIST  231 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~  231 (285)
                      .....+|+|+++.++....
T Consensus       143 ~~~~~vDvVf~d~~~~~~~  161 (233)
T 4df3_A          143 HLVEGVDGLYADVAQPEQA  161 (233)
T ss_dssp             TTCCCEEEEEECCCCTTHH
T ss_pred             cccceEEEEEEeccCChhH
Confidence            2346799999998877543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.27  E-value=1.4e-11  Score=114.93  Aligned_cols=95  Identities=13%  Similarity=0.205  Sum_probs=80.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---------------------------------------
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---------------------------------------  163 (285)
                      -...+.++..|+....+.++..|||+|||+|.+++.+|..+                                       
T Consensus       177 Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  256 (385)
T 3ldu_A          177 APIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES  256 (385)
T ss_dssp             CCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             CCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence            34467788889999888888999999999999998887652                                       


Q ss_pred             -CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          164 -ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       164 -~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                       .+|+|+|+|+.+++.|+.|+..++   ++++.++|+.+++.             ...||+||+||||...
T Consensus       257 ~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------------~~~~D~Iv~NPPyg~r  314 (385)
T 3ldu_A          257 KFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------------EDEFGFIITNPPYGER  314 (385)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------------SCBSCEEEECCCCCCS
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------------CCCCcEEEECCCCcCc
Confidence             469999999999999999987654   69999999998752             3579999999999744

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.27  E-value=2e-11  Score=109.67  Aligned_cols=84  Identities=23%  Similarity=0.296  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHH-HHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLT-NVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t-~~la~~-~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~  203 (285)
                      .+++.....+.+.++.+|||||||+|.++ +.+++. +++|+|||+|+++++.|+++++..  ++++++++|+.+++   
T Consensus       109 ~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~---  185 (298)
T 3fpf_A          109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID---  185 (298)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG---
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC---
Confidence            34444456778889999999999998766 455654 889999999999999999998753  58999999998863   


Q ss_pred             hhhhHHhhhcCCCCceEEEEcC
Q 023240          204 HMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                                 ...||+|+.+-
T Consensus       186 -----------d~~FDvV~~~a  196 (298)
T 3fpf_A          186 -----------GLEFDVLMVAA  196 (298)
T ss_dssp             -----------GCCCSEEEECT
T ss_pred             -----------CCCcCEEEECC
Confidence                       26799998763

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.27  E-value=6.2e-11  Score=102.63  Aligned_cols=110  Identities=16%  Similarity=0.246  Sum_probs=85.5

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~  200 (285)
                      ...+.....++..+.+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|+++....   ++++++.+|+.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            344666678888888888999999999999999999988889999999999999999998654   47999999998753


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCC-CcHHHHHHhccCCCcee
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~-~~~~i~~~l~~~g~~~~  245 (285)
                      .            ....||+|++++|.. ..-..+.+++.+++.+.
T Consensus       154 ~------------~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~  187 (248)
T 2yvl_A          154 V------------PEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVG  187 (248)
T ss_dssp             C------------CTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEE
T ss_pred             c------------CCCcccEEEECCcCHHHHHHHHHHHcCCCCEEE
Confidence            1            345799999998843 22233344455555443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.27  E-value=1.4e-11  Score=106.26  Aligned_cols=86  Identities=12%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ++.+.+.++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+++.+..+++.++.+|+.+.....        
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~--------  138 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA--------  138 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGT--------
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccccc--------
Confidence            34445567889999999999999999987 4 7999999999999999999877689999999998721000        


Q ss_pred             hcCCCCceEEEEcCCCC
Q 023240          212 RKSSSGFAKVVANIPFN  228 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~  228 (285)
                       .....||+|+.+++..
T Consensus       139 -~~~~~~D~v~~~~~~~  154 (230)
T 1fbn_A          139 -NIVEKVDVIYEDVAQP  154 (230)
T ss_dssp             -TTSCCEEEEEECCCST
T ss_pred             -ccCccEEEEEEecCCh
Confidence             1126799999887643

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.26  E-value=1.4e-11  Score=116.25  Aligned_cols=85  Identities=18%  Similarity=0.304  Sum_probs=70.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ..++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|++.++ +++++.+|+.++.             . ..
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~-------------~-~~  353 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVS-------------V-KG  353 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCC-------------C-TT
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcC-------------c-cC
Confidence            4467899999999999999999988899999999999999999987543 3899999998864             1 27


Q ss_pred             ceEEEEcCCCCCcH-HHHHHh
Q 023240          218 FAKVVANIPFNIST-DVIKQL  237 (285)
Q Consensus       218 ~D~Vv~n~P~~~~~-~i~~~l  237 (285)
                      ||+|++|||+.... .+++.+
T Consensus       354 fD~Vv~dPPr~g~~~~~~~~l  374 (425)
T 2jjq_A          354 FDTVIVDPPRAGLHPRLVKRL  374 (425)
T ss_dssp             CSEEEECCCTTCSCHHHHHHH
T ss_pred             CCEEEEcCCccchHHHHHHHH
Confidence            99999999985443 344433

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.26  E-value=2.3e-11  Score=108.54  Aligned_cols=89  Identities=16%  Similarity=0.219  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccc
Q 023240          127 SEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (285)
Q Consensus       127 ~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~  198 (285)
                      ...+..++..+    ...++.+|||||||+|..+..+++. +.+|+|+|+++.+++.|+++....   ++++++.+|+.+
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            45567788888    7778899999999999999999987 889999999999999999987543   479999999999


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      +++            ..+.||+|+++-.+
T Consensus       144 ~~~------------~~~~fD~v~~~~~l  160 (297)
T 2o57_A          144 IPC------------EDNSYDFIWSQDAF  160 (297)
T ss_dssp             CSS------------CTTCEEEEEEESCG
T ss_pred             CCC------------CCCCEeEEEecchh
Confidence            874            34679999997554

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.26  E-value=4.7e-11  Score=101.78  Aligned_cols=86  Identities=19%  Similarity=0.203  Sum_probs=70.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhH
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      ...+...+.  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++.... ++++++.+|+.+.++       
T Consensus        29 ~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-------   99 (227)
T 1ve3_A           29 EPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSF-------   99 (227)
T ss_dssp             HHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCS-------
T ss_pred             HHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCC-------
Confidence            334444333  4789999999999999999998889999999999999999998755 489999999988753       


Q ss_pred             HhhhcCCCCceEEEEcCC--CCC
Q 023240          209 FERRKSSSGFAKVVANIP--FNI  229 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P--~~~  229 (285)
                           ..+.||+|+++.+  +..
T Consensus       100 -----~~~~~D~v~~~~~~~~~~  117 (227)
T 1ve3_A          100 -----EDKTFDYVIFIDSIVHFE  117 (227)
T ss_dssp             -----CTTCEEEEEEESCGGGCC
T ss_pred             -----CCCcEEEEEEcCchHhCC
Confidence                 3468999999988  544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.26  E-value=3.2e-11  Score=108.70  Aligned_cols=86  Identities=10%  Similarity=0.129  Sum_probs=73.2

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhh
Q 023240          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       130 ~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~  204 (285)
                      .+.+++.+. +.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++...+   +++++.+|+.++++   
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---  181 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF---  181 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC---
Confidence            345666666 677889999999999999999998 8999999999999999999987653   79999999998763   


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                               ..+.||+|+++-.+
T Consensus       182 ---------~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          182 ---------DKGAVTASWNNEST  195 (312)
T ss_dssp             ---------CTTCEEEEEEESCG
T ss_pred             ---------CCCCEeEEEECCch
Confidence                     34789999997554

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.26  E-value=3.8e-11  Score=104.47  Aligned_cols=108  Identities=13%  Similarity=0.118  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccc
Q 023240          128 EINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (285)
Q Consensus       128 ~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~  201 (285)
                      .+...++..+.   +.++.+|||+|||+|..+..+++.   .++|+|+|+++.|++.+.+......|+.++.+|+.....
T Consensus        60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~  139 (232)
T 3id6_C           60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQS  139 (232)
T ss_dssp             HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGG
T ss_pred             HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchh
Confidence            44555555554   778999999999999999999986   469999999999976555544444689999999986532


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH----HHhccCCCce
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVI----KQLLPMGDIF  244 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~----~~l~~~g~~~  244 (285)
                      ..         .....||+|++|.+......++    .+++.+|+.+
T Consensus       140 ~~---------~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~l  177 (232)
T 3id6_C          140 YK---------SVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDM  177 (232)
T ss_dssp             TT---------TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEE
T ss_pred             hh---------ccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEE
Confidence            11         1235799999998875444433    3245555544

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.26  E-value=2.3e-11  Score=105.89  Aligned_cols=85  Identities=18%  Similarity=0.229  Sum_probs=71.6

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      .+...+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++.. .++++++.+|+.++++         
T Consensus        35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~---------  104 (253)
T 3g5l_A           35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIAI---------  104 (253)
T ss_dssp             HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCCC---------
T ss_pred             HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCCC---------
Confidence            455555555788999999999999999999876 99999999999999999976 4589999999998763         


Q ss_pred             hhcCCCCceEEEEcCCCCC
Q 023240          211 RRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~~  229 (285)
                         ..+.||+|+++..++.
T Consensus       105 ---~~~~fD~v~~~~~l~~  120 (253)
T 3g5l_A          105 ---EPDAYNVVLSSLALHY  120 (253)
T ss_dssp             ---CTTCEEEEEEESCGGG
T ss_pred             ---CCCCeEEEEEchhhhh
Confidence               3478999999876543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.26  E-value=4.8e-11  Score=104.87  Aligned_cols=92  Identities=22%  Similarity=0.280  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (285)
                      ......+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|++++...   ++++++.+|+.++++ 
T Consensus        47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-  125 (273)
T 3bus_A           47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF-  125 (273)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC-
Confidence            345677888888888899999999999999999986 789999999999999999988754   379999999998764 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                                 ..+.||+|+++..++..
T Consensus       126 -----------~~~~fD~v~~~~~l~~~  142 (273)
T 3bus_A          126 -----------EDASFDAVWALESLHHM  142 (273)
T ss_dssp             -----------CTTCEEEEEEESCTTTS
T ss_pred             -----------CCCCccEEEEechhhhC
Confidence                       34689999998665443

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.26  E-value=3.2e-11  Score=103.62  Aligned_cols=89  Identities=21%  Similarity=0.383  Sum_probs=74.1

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh
Q 023240          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       129 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (285)
                      ....++..+. ..++.+|||+|||+|..+..+++.  +.+|+|+|+++.+++.|++++...++++++++|+.+.++    
T Consensus        31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----  106 (234)
T 3dtn_A           31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF----  106 (234)
T ss_dssp             HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCC----
T ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCC----
Confidence            3345555554 346789999999999999999998  789999999999999999998877799999999999863    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                              . +.||+|+++..++..
T Consensus       107 --------~-~~fD~v~~~~~l~~~  122 (234)
T 3dtn_A          107 --------E-EKYDMVVSALSIHHL  122 (234)
T ss_dssp             --------C-SCEEEEEEESCGGGS
T ss_pred             --------C-CCceEEEEeCccccC
Confidence                    2 789999998775433

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.26  E-value=3.4e-11  Score=106.46  Aligned_cols=107  Identities=21%  Similarity=0.330  Sum_probs=84.5

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEEcc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQED  195 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~-----~~v~~~~gD  195 (285)
                      ...+.....++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++++..     ++++++.+|
T Consensus        82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            345677788888888888999999999999999999986   579999999999999999998643     489999999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCCCC--CcHHHHHHhccCCC
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGD  242 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~--~~~~i~~~l~~~g~  242 (285)
                      +.+.++            ..+.||+|++++|..  ....+.+.|.++|.
T Consensus       162 ~~~~~~------------~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~  198 (280)
T 1i9g_A          162 LADSEL------------PDGSVDRAVLDMLAPWEVLDAVSRLLVAGGV  198 (280)
T ss_dssp             GGGCCC------------CTTCEEEEEEESSCGGGGHHHHHHHEEEEEE
T ss_pred             hHhcCC------------CCCceeEEEECCcCHHHHHHHHHHhCCCCCE
Confidence            988753            346799999997743  23333344444443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.25  E-value=3.2e-11  Score=101.38  Aligned_cols=72  Identities=21%  Similarity=0.342  Sum_probs=63.6

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEE
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~V  221 (285)
                      +.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++.   ++++++++|+.++++            ..+.||+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~------------~~~~fD~v  106 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH---PSVTFHHGTITDLSD------------SPKRWAGL  106 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC---TTSEEECCCGGGGGG------------SCCCEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC---CCCeEEeCccccccc------------CCCCeEEE
Confidence            779999999999999999999889999999999999999884   489999999998763            45789999


Q ss_pred             EEcCCCC
Q 023240          222 VANIPFN  228 (285)
Q Consensus       222 v~n~P~~  228 (285)
                      +++..++
T Consensus       107 ~~~~~l~  113 (203)
T 3h2b_A          107 LAWYSLI  113 (203)
T ss_dssp             EEESSST
T ss_pred             EehhhHh
Confidence            9975543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.25  E-value=4.9e-11  Score=110.62  Aligned_cols=104  Identities=13%  Similarity=0.221  Sum_probs=81.3

Q ss_pred             CCccccCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC--
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--  187 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~--  187 (285)
                      .+...|.+.+.+.+.....++...  ...++.+|||+| |+|.++..++..+  .+|+++|+++.+++.|+++++.++  
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~  221 (373)
T 2qm3_A          143 EPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE  221 (373)
T ss_dssp             CCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred             ccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            455567776777777666665432  223578999999 9999999998874  599999999999999999987554  


Q ss_pred             CeEEEEccccc-ccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          188 QLKVLQEDFVK-CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       188 ~v~~~~gD~~~-~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +++++.+|+.+ ++.           ...+.||+|++||||+.
T Consensus       222 ~v~~~~~D~~~~l~~-----------~~~~~fD~Vi~~~p~~~  253 (373)
T 2qm3_A          222 DIEIFTFDLRKPLPD-----------YALHKFDTFITDPPETL  253 (373)
T ss_dssp             CEEEECCCTTSCCCT-----------TTSSCBSEEEECCCSSH
T ss_pred             CEEEEEChhhhhchh-----------hccCCccEEEECCCCch
Confidence            89999999988 542           12357999999999964

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.25  E-value=1.7e-11  Score=104.27  Aligned_cols=86  Identities=21%  Similarity=0.355  Sum_probs=73.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~  205 (285)
                      ..++..+.+.++.+|||+|||+|.++..+++.+   .+|+|+|+++.+++.|++++...  ++++++.+|+.++++    
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----  102 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL----  102 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS----
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC----
Confidence            566777777788999999999999999999875   79999999999999999998654  379999999998763    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                              ..+.||+|+++..++
T Consensus       103 --------~~~~fD~v~~~~~l~  117 (219)
T 3dh0_A          103 --------PDNTVDFIFMAFTFH  117 (219)
T ss_dssp             --------CSSCEEEEEEESCGG
T ss_pred             --------CCCCeeEEEeehhhh
Confidence                    346799999986654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.25  E-value=7.7e-11  Score=99.98  Aligned_cols=101  Identities=15%  Similarity=0.188  Sum_probs=75.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      +...+.....+...+...++.+|||||||+|+.+..+++.   +.+|+++|+++.+++.|+++++..+   +++++.+|+
T Consensus        38 p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  117 (210)
T 3c3p_A           38 PIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP  117 (210)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecH
Confidence            3445555444444344446789999999999999999986   6799999999999999999987543   699999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~  235 (285)
                      .+...           ...+ ||+|+++.+......+++
T Consensus       118 ~~~~~-----------~~~~-fD~v~~~~~~~~~~~~l~  144 (210)
T 3c3p_A          118 LGIAA-----------GQRD-IDILFMDCDVFNGADVLE  144 (210)
T ss_dssp             HHHHT-----------TCCS-EEEEEEETTTSCHHHHHH
T ss_pred             HHHhc-----------cCCC-CCEEEEcCChhhhHHHHH
Confidence            77421           1234 999999977655555554

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.24  E-value=1.9e-11  Score=104.59  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=82.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      +...+.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|+++++..+   +++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            3455665555555555557889999999999999999987   6899999999999999999987653   699999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      .+....     .. .....+.||+|+.+++......+++   +++.+|+.+
T Consensus       126 ~~~~~~-----~~-~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~l  170 (225)
T 3tr6_A          126 KDTLAE-----LI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLI  170 (225)
T ss_dssp             HHHHHH-----HH-TTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHH-----hh-hccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence            764211     00 0001168999999988654444443   444444444

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.24  E-value=3e-11  Score=103.32  Aligned_cols=99  Identities=14%  Similarity=0.077  Sum_probs=70.2

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          138 AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+.++.+|||+|||+|..+..+++..  ++|+|+|+|+.|++.+.+..+..+++.++.+|+.+.....         ...
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~---------~~~  124 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS---------GIV  124 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT---------TTC
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhc---------ccc
Confidence            45578899999999999999999873  7999999999988776666554568999999987642100         113


Q ss_pred             CCceEEEEcCCCCCcHH----HHHHhccCCCcee
Q 023240          216 SGFAKVVANIPFNISTD----VIKQLLPMGDIFS  245 (285)
Q Consensus       216 ~~~D~Vv~n~P~~~~~~----i~~~l~~~g~~~~  245 (285)
                      +.||+|++|.+......    .+.+++.+|+.+.
T Consensus       125 ~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~  158 (210)
T 1nt2_A          125 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV  158 (210)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             cceeEEEEeccChhHHHHHHHHHHHHhCCCCEEE
Confidence            67999999966543222    1234455555443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.24  E-value=1.5e-11  Score=106.96  Aligned_cols=88  Identities=19%  Similarity=0.170  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~  205 (285)
                      .+...+.+.+. .+|.+|||||||+|.++..+++. +.+|++||+++.+++.|+++....+ +++++.+|+.++...   
T Consensus        48 ~~m~~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~---  123 (236)
T 3orh_A           48 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT---  123 (236)
T ss_dssp             HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG---
T ss_pred             HHHHHHHHhhc-cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc---
Confidence            34444444443 46789999999999999999887 4689999999999999999988664 789999999876421   


Q ss_pred             hhHHhhhcCCCCceEEEEcCC
Q 023240          206 LSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                             ....+||.|+.+..
T Consensus       124 -------~~~~~FD~i~~D~~  137 (236)
T 3orh_A          124 -------LPDGHFDGILYDTY  137 (236)
T ss_dssp             -------SCTTCEEEEEECCC
T ss_pred             -------ccccCCceEEEeee
Confidence                   34577999988754

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.24  E-value=2.2e-11  Score=108.09  Aligned_cols=102  Identities=18%  Similarity=0.314  Sum_probs=74.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (285)
                      ....++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++++..   ++++++.+|+.+.   
T Consensus        98 ~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~---  174 (275)
T 1yb2_A           98 DASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF---  174 (275)
T ss_dssp             --------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC---
T ss_pred             hHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc---
Confidence            3456777778888899999999999999999987   689999999999999999998766   4899999999873   


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCC--CcHHHHHHhccCCCc
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDI  243 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~--~~~~i~~~l~~~g~~  243 (285)
                                ...+.||+|++++|..  ....+.+.|.++|.+
T Consensus       175 ----------~~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l  207 (275)
T 1yb2_A          175 ----------ISDQMYDAVIADIPDPWNHVQKIASMMKPGSVA  207 (275)
T ss_dssp             ----------CCSCCEEEEEECCSCGGGSHHHHHHTEEEEEEE
T ss_pred             ----------CcCCCccEEEEcCcCHHHHHHHHHHHcCCCCEE
Confidence                      2346799999998743  233333444444433

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.23  E-value=3.6e-11  Score=106.74  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=70.1

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcC
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...+ +++++.+|+.+.+.             
T Consensus       115 ~~~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-------------  181 (286)
T 3m70_A          115 AAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-------------  181 (286)
T ss_dssp             HHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-------------
T ss_pred             HhhccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-------------
Confidence            3333468899999999999999999999999999999999999999988665 89999999998752             


Q ss_pred             CCCceEEEEcCCCCC
Q 023240          215 SSGFAKVVANIPFNI  229 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~~  229 (285)
                      .+.||+|+++.+++.
T Consensus       182 ~~~fD~i~~~~~~~~  196 (286)
T 3m70_A          182 QENYDFIVSTVVFMF  196 (286)
T ss_dssp             CSCEEEEEECSSGGG
T ss_pred             cCCccEEEEccchhh
Confidence            478999999987653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.23  E-value=4e-11  Score=102.86  Aligned_cols=92  Identities=11%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             HHHHHHHH---HhcCCCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccc
Q 023240          128 EINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (285)
Q Consensus       128 ~~~~~l~~---~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~  201 (285)
                      .....++.   .+.+.++.+|||+|||+|.++..+++. +  .+|+|+|+++.+++.++++.+..++++++.+|+.+...
T Consensus        57 ~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  136 (227)
T 1g8a_A           57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE  136 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG
T ss_pred             hHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcch
Confidence            33455533   333667889999999999999999976 3  79999999999999999998877799999999987431


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ..         .....||+|++++|..
T Consensus       137 ~~---------~~~~~~D~v~~~~~~~  154 (227)
T 1g8a_A          137 YR---------ALVPKVDVIFEDVAQP  154 (227)
T ss_dssp             GT---------TTCCCEEEEEECCCST
T ss_pred             hh---------cccCCceEEEECCCCH
Confidence            10         1235799999998844

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.23  E-value=1.6e-11  Score=114.86  Aligned_cols=91  Identities=21%  Similarity=0.303  Sum_probs=69.7

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchh
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~  203 (285)
                      .++...+.++..+ ..++.+|||+|||+|.+++.++..+++|+++|+|+.+++.|++|++.++ ..++.++|+.+...  
T Consensus       199 ~dqr~~r~~l~~~-~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~--  275 (393)
T 4dmg_A          199 LDQRENRRLFEAM-VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLR--  275 (393)
T ss_dssp             GGGHHHHHHHHTT-CCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHH--
T ss_pred             CCHHHHHHHHHHH-hcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHH--
Confidence            3344444444433 2258899999999999999999998889999999999999999987654 34677889877531  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                               ...+.||+|++|||+
T Consensus       276 ---------~~~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          276 ---------GLEGPFHHVLLDPPT  290 (393)
T ss_dssp             ---------TCCCCEEEEEECCCC
T ss_pred             ---------HhcCCCCEEEECCCc
Confidence                     112349999999997

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.23  E-value=3.3e-11  Score=108.79  Aligned_cols=96  Identities=10%  Similarity=0.305  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccch
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~  202 (285)
                      .+.+++.+++.+.+.++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|+++++.+ ++++++++|+.+++..
T Consensus        11 ~pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~   90 (301)
T 1m6y_A           11 IPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL   90 (301)
T ss_dssp             CCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence            3456777888888888899999999999999999987  579999999999999999998765 4899999999887521


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                            +.. .....||.|+.|+|+.
T Consensus        91 ------l~~-~g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           91 ------LKT-LGIEKVDGILMDLGVS  109 (301)
T ss_dssp             ------HHH-TTCSCEEEEEEECSCC
T ss_pred             ------HHh-cCCCCCCEEEEcCccc
Confidence                  100 1125799999999975

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.23  E-value=6.7e-11  Score=104.87  Aligned_cols=105  Identities=19%  Similarity=0.316  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~  198 (285)
                      ..+.....++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++++..   ++++++.+|+.+
T Consensus        96 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  175 (277)
T 1o54_A           96 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  175 (277)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            33455578888888888999999999999999999987   579999999999999999998765   379999999987


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCC--CcHHHHHHhccCCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGD  242 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~--~~~~i~~~l~~~g~  242 (285)
                      . +            ..+.||+|++|+|..  ....+.+.|.++|.
T Consensus       176 ~-~------------~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~  208 (277)
T 1o54_A          176 G-F------------DEKDVDALFLDVPDPWNYIDKCWEALKGGGR  208 (277)
T ss_dssp             C-C------------SCCSEEEEEECCSCGGGTHHHHHHHEEEEEE
T ss_pred             c-c------------cCCccCEEEECCcCHHHHHHHHHHHcCCCCE
Confidence            5 2            235799999998864  22333344444433

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.23  E-value=8.1e-11  Score=102.51  Aligned_cols=92  Identities=24%  Similarity=0.392  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHh-----cCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEccccccc
Q 023240          127 SEINDQLAAAA-----AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l-----~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~  200 (285)
                      ......+++.+     ...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++.. .++++++.+|+.+++
T Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   99 (263)
T 2yqz_A           20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP   99 (263)
T ss_dssp             HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC
Confidence            44455555554     455788999999999999999999889999999999999999999732 258999999998876


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      +            ..+.||+|+++..++..
T Consensus       100 ~------------~~~~fD~v~~~~~l~~~  117 (263)
T 2yqz_A          100 L------------PDESVHGVIVVHLWHLV  117 (263)
T ss_dssp             S------------CTTCEEEEEEESCGGGC
T ss_pred             C------------CCCCeeEEEECCchhhc
Confidence            3            34679999998775544

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.23  E-value=7.7e-11  Score=101.00  Aligned_cols=114  Identities=21%  Similarity=0.216  Sum_probs=84.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~  196 (285)
                      +...+.....+...+...++.+|||||||+|+++..+++.   +.+|+++|+++.+++.|+++++..   ++++++.+|+
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            5666777776666666667889999999999999999986   579999999999999999998765   3799999998


Q ss_pred             ccccchhhhhhHHhhhcC--CCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          197 VKCHIRSHMLSLFERRKS--SSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~--~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      .+....     +.   ..  .+.||+|+++++.......++   +++..|+.+
T Consensus       131 ~~~~~~-----~~---~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~l  175 (229)
T 2avd_A          131 LETLDE-----LL---AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGIL  175 (229)
T ss_dssp             HHHHHH-----HH---HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHH-----HH---hcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence            764210     00   11  167999999988654444443   334444444

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.23  E-value=3.9e-11  Score=109.98  Aligned_cols=83  Identities=18%  Similarity=0.351  Sum_probs=69.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (285)
                      .+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++ +++.|+++++.+   ++++++.+|+.++++    
T Consensus        53 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----  127 (340)
T 2fyt_A           53 RDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL----  127 (340)
T ss_dssp             HHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC----
T ss_pred             HHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC----
Confidence            34555555566788999999999999999999865 999999996 999999998765   489999999998763    


Q ss_pred             hhHHhhhcCCCCceEEEEcC
Q 023240          206 LSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~  225 (285)
                              +.++||+|++++
T Consensus       128 --------~~~~~D~Ivs~~  139 (340)
T 2fyt_A          128 --------PVEKVDVIISEW  139 (340)
T ss_dssp             --------SCSCEEEEEECC
T ss_pred             --------CCCcEEEEEEcC
Confidence                    346799999987

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.23  E-value=5.4e-11  Score=101.69  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.+|||||||+|.++..+|+.  +.+|+|||+++.+++.|++++...  +|++++++|+.+++.      .    ...+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~------~----~~~~  107 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD------V----FEPG  107 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH------H----CCTT
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh------h----cCcC
Confidence            5779999999999999999987  679999999999999999998755  489999999988541      0    2346


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      .+|.|+.+.|
T Consensus       108 ~~d~v~~~~~  117 (213)
T 2fca_A          108 EVKRVYLNFS  117 (213)
T ss_dssp             SCCEEEEESC
T ss_pred             CcCEEEEECC
Confidence            7899988754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.23  E-value=4.2e-11  Score=106.54  Aligned_cols=93  Identities=16%  Similarity=0.265  Sum_probs=77.5

Q ss_pred             ccCCHHHHHHHHHHh-cCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~  197 (285)
                      ++..+.....+++.+ ...++.+|||||||+|..+..+++.   +.+|+|+|+++.+++.|++++...+ +++++.+|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~   82 (284)
T 3gu3_A            3 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT   82 (284)
T ss_dssp             TTCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred             cccchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh
Confidence            344567777777766 4557889999999999999999987   5799999999999999999987665 8999999999


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ++++             .++||+|+++..++
T Consensus        83 ~~~~-------------~~~fD~v~~~~~l~  100 (284)
T 3gu3_A           83 EIEL-------------NDKYDIAICHAFLL  100 (284)
T ss_dssp             TCCC-------------SSCEEEEEEESCGG
T ss_pred             hcCc-------------CCCeeEEEECChhh
Confidence            8763             35899999986644

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.23  E-value=6.5e-11  Score=107.93  Aligned_cols=110  Identities=20%  Similarity=0.290  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhc-------------CCC
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-------------IDQ  188 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~-------------~~~  188 (285)
                      ..+.....++..+.+.++.+|||+|||+|.++..+++. +  .+|+|+|+++.+++.|++++..             .++
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            55667788888888889999999999999999999987 4  7999999999999999999874             248


Q ss_pred             eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc-HHHHHHhccCCCce
Q 023240          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLLPMGDIF  244 (285)
Q Consensus       189 v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~~g~~~  244 (285)
                      ++++.+|+.+....          ...+.||+|++|+|.... -+.+.+++.+|+.+
T Consensus       169 v~~~~~d~~~~~~~----------~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~l  215 (336)
T 2b25_A          169 VDFIHKDISGATED----------IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVC  215 (336)
T ss_dssp             EEEEESCTTCCC-----------------EEEEEECSSSTTTTHHHHGGGEEEEEEE
T ss_pred             eEEEECChHHcccc----------cCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEE
Confidence            99999999886310          123569999999764322 33333444444443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.23  E-value=4.1e-11  Score=105.42  Aligned_cols=106  Identities=24%  Similarity=0.282  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHH------HHHHHHHHhhcC---CCeEEEEcc
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQH------MVGLVRERFASI---DQLKVLQED  195 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~------~v~~a~~~~~~~---~~v~~~~gD  195 (285)
                      .....+++.+.+.++.+|||||||+|.++..+++. +  .+|+|+|+++.      +++.|++++...   ++++++.+|
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            44566777888888999999999999999999987 4  79999999997      999999998765   379999998


Q ss_pred             -c--ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc------HHHHHHhccCCCcee
Q 023240          196 -F--VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDIFS  245 (285)
Q Consensus       196 -~--~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~------~~i~~~l~~~g~~~~  245 (285)
                       .  ..++            ...+.||+|+++.+++..      ...++.++++|+.+.
T Consensus       110 ~~~~~~~~------------~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~  156 (275)
T 3bkx_A          110 NLSDDLGP------------IADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD  156 (275)
T ss_dssp             CTTTCCGG------------GTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEE
T ss_pred             hhhhccCC------------CCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEE
Confidence             3  3333            234789999998775433      244567777566554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.23  E-value=4.5e-11  Score=103.73  Aligned_cols=91  Identities=19%  Similarity=0.207  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (285)
                      .....++..+...++.+|||||||+|.++..++.. ..+|+++|+++.+++.|++++...++++++.+|+.++++     
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----  154 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL-----  154 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC-----
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCC-----
Confidence            34456666676667889999999999999999887 467999999999999999998765689999999988763     


Q ss_pred             hHHhhhcCCCCceEEEEcCCCCCc
Q 023240          207 SLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                             ..+.||+|+++..++..
T Consensus       155 -------~~~~fD~v~~~~~l~~~  171 (254)
T 1xtp_A          155 -------PPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             -------CSSCEEEEEEESCGGGS
T ss_pred             -------CCCCeEEEEEcchhhhC
Confidence                   34689999998765443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.22  E-value=9.2e-11  Score=104.02  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=77.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      .++..+... +.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++++...   ++++++.+|+.+.+.       
T Consensus        60 ~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------  131 (285)
T 4htf_A           60 RVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-------  131 (285)
T ss_dssp             HHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-------
T ss_pred             HHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-------
Confidence            445555443 679999999999999999999999999999999999999998765   479999999998762       


Q ss_pred             HhhhcCCCCceEEEEcCCCCCc---HHHH---HHhccCCCcee
Q 023240          209 FERRKSSSGFAKVVANIPFNIS---TDVI---KQLLPMGDIFS  245 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~~~---~~i~---~~l~~~g~~~~  245 (285)
                          ...+.||+|+++..++..   ..++   .+++.+|+.+.
T Consensus       132 ----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  170 (285)
T 4htf_A          132 ----HLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLS  170 (285)
T ss_dssp             ----GCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEE
T ss_pred             ----hcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEE
Confidence                234789999998665432   2232   34455555553

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.22  E-value=5e-11  Score=100.51  Aligned_cols=76  Identities=22%  Similarity=0.327  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++....++++++.+|+.++++            ..+.|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~------------~~~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDF------------PSASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCS------------CSSCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCC------------CCCcc
Confidence            4678999999999999999999865 8999999999999999998765689999999988753            34679


Q ss_pred             eEEEEcCCC
Q 023240          219 AKVVANIPF  227 (285)
Q Consensus       219 D~Vv~n~P~  227 (285)
                      |+|+++.++
T Consensus       109 D~v~~~~~~  117 (215)
T 2pxx_A          109 DVVLEKGTL  117 (215)
T ss_dssp             EEEEEESHH
T ss_pred             cEEEECcch
Confidence            999998775

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.22  E-value=1.9e-11  Score=106.45  Aligned_cols=109  Identities=15%  Similarity=0.188  Sum_probs=79.7

Q ss_pred             ccCC-HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcc
Q 023240          123 YMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFASIDQLKVLQED  195 (285)
Q Consensus       123 ~~~~-~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD  195 (285)
                      .+.. ++....+.+.+...++.+|||||||+|+++..+++.      +++|+|||+++.+++.|+. .  .++++++++|
T Consensus        62 ~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~--~~~v~~~~gD  138 (236)
T 2bm8_A           62 RMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D--MENITLHQGD  138 (236)
T ss_dssp             ECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G--CTTEEEEECC
T ss_pred             cccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c--CCceEEEECc
Confidence            4445 777777777666556789999999999999999986      6899999999999998872 2  3589999999


Q ss_pred             cccc---cchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---H-hccCCCcee
Q 023240          196 FVKC---HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---Q-LLPMGDIFS  245 (285)
Q Consensus       196 ~~~~---~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~-l~~~g~~~~  245 (285)
                      +.+.   +.           .....||+|+++........++.   + ++..|+.+.
T Consensus       139 ~~~~~~l~~-----------~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv  184 (236)
T 2bm8_A          139 CSDLTTFEH-----------LREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFI  184 (236)
T ss_dssp             SSCSGGGGG-----------GSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEE
T ss_pred             chhHHHHHh-----------hccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEE
Confidence            9885   32           12346999998766443344443   2 555555553

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.22  E-value=5.2e-12  Score=110.41  Aligned_cols=116  Identities=11%  Similarity=0.110  Sum_probs=84.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~  196 (285)
                      +...+.....+...+...++.+|||||||+|++++.+++.   +++|+++|+++++++.|+++++..   ++++++.+|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4566777777666666667889999999999999999984   579999999999999999998765   3899999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      .+....     +... ...+.||+|+.+.+.......++   +++.+|+.+
T Consensus       122 ~~~l~~-----~~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  166 (242)
T 3r3h_A          122 LDTLHS-----LLNE-GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLI  166 (242)
T ss_dssp             HHHHHH-----HHHH-HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHH-----Hhhc-cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEE
Confidence            775311     0000 01478999999987554444333   444444544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.22  E-value=3.2e-11  Score=112.42  Aligned_cols=95  Identities=12%  Similarity=0.122  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKC  199 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~  199 (285)
                      .++...+.++.... .++.+|||+|||+|.+++.+|..++ +|+|+|+++.+++.|++|++.++    +++++++|+.+.
T Consensus       197 ~~~~~~~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~  275 (385)
T 2b78_A          197 LDQRQVRNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY  275 (385)
T ss_dssp             GGGHHHHHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH
T ss_pred             CcHHHHHHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH
Confidence            55555555554432 4678999999999999999998765 89999999999999999998663    799999999874


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ...     +.   .....||+|++|||+.
T Consensus       276 l~~-----~~---~~~~~fD~Ii~DPP~~  296 (385)
T 2b78_A          276 FKY-----AR---RHHLTYDIIIIDPPSF  296 (385)
T ss_dssp             HHH-----HH---HTTCCEEEEEECCCCC
T ss_pred             HHH-----HH---HhCCCccEEEECCCCC
Confidence            210     00   1245799999999984

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.22  E-value=6.4e-11  Score=101.96  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=71.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      .+...+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++... .+++++.+|+.+.++         
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~---------  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLHL---------  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGCCC---------
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhccC---------
Confidence            455666666788999999999999999999887 999999999999999998754 379999999988763         


Q ss_pred             hhcCCCCceEEEEcCCCCC
Q 023240          211 RRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~~  229 (285)
                         ..+.||+|+++..++.
T Consensus       104 ---~~~~fD~v~~~~~l~~  119 (243)
T 3bkw_A          104 ---PQDSFDLAYSSLALHY  119 (243)
T ss_dssp             ---CTTCEEEEEEESCGGG
T ss_pred             ---CCCCceEEEEeccccc
Confidence               3468999999876543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.22  E-value=1.7e-10  Score=103.98  Aligned_cols=86  Identities=17%  Similarity=0.229  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (285)
                      ..+..+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|++++...   ++++++.+|+.+++   
T Consensus        77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---  153 (318)
T 2fk8_A           77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  153 (318)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence            44566777777778899999999999999999988 899999999999999999998764   36999999997752   


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                  +.||+|+++..++
T Consensus       154 ------------~~fD~v~~~~~l~  166 (318)
T 2fk8_A          154 ------------EPVDRIVSIEAFE  166 (318)
T ss_dssp             ------------CCCSEEEEESCGG
T ss_pred             ------------CCcCEEEEeChHH
Confidence                        6799999985543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.21  E-value=2.1e-10  Score=101.68  Aligned_cols=84  Identities=17%  Similarity=0.212  Sum_probs=70.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~-~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (285)
                      .+..+++.+.+.++.+|||||||+|.++..+++ .+.+|+|+|+++.+++.|++++...   ++++++.+|+.+++    
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----  127 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----  127 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----
Confidence            455667777777889999999999999999995 4889999999999999999998754   38999999997642    


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                                 +.||+|+++-.+
T Consensus       128 -----------~~fD~v~~~~~l  139 (287)
T 1kpg_A          128 -----------EPVDRIVSIGAF  139 (287)
T ss_dssp             -----------CCCSEEEEESCG
T ss_pred             -----------CCeeEEEEeCch
Confidence                       679999987544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.21  E-value=6.1e-11  Score=115.09  Aligned_cols=120  Identities=14%  Similarity=0.129  Sum_probs=89.5

Q ss_pred             chHHHHHHHHh-CCCCCccccCCcccCCHHHHHHHHHHhc----CCCCCEEEEEcCcccHHHHHHHHh-----CCEEEEE
Q 023240          100 DYHATIKALNS-KGRFPRKSLGQHYMLNSEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAI  169 (285)
Q Consensus       100 ~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~l~~~l~----~~~~~~VLDiGcG~G~~t~~la~~-----~~~V~gi  169 (285)
                      ..+.+.+.+-. .....++..|+ |+|++.++..|++.+.    +.++.+|||.+||+|.+...+++.     ...++|+
T Consensus       176 ~lG~~YE~ll~~~a~~~~k~~G~-fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          176 MLGDAYEYLIGQFATDSGKKAGE-FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             HHHHHHHHHHHHHHCC---CCSS-CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccCCe-ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            34455544322 12234556777 9999999999999998    456789999999999998887765     4689999


Q ss_pred             eCCHHHHHHHHHHhhcCC----CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          170 EKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       170 D~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      |+++.++..|+.|+...+    ++.+.++|.+..+++.         .....||+||+||||..
T Consensus       255 Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~---------~~~~~fD~IvaNPPf~~  309 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT---------QEPTNFDGVLMNPPYSA  309 (542)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC---------SSCCCBSEEEECCCTTC
T ss_pred             ECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc---------cccccccEEEecCCcCC
Confidence            999999999999875432    5789999998762110         23578999999999963

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.21  E-value=3.7e-11  Score=109.07  Aligned_cols=93  Identities=14%  Similarity=0.239  Sum_probs=76.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      +.........+...+.+.++.+|||+|||+|..+..+++.   +++|+|+|+++.+++.++++++..+  +++++++|+.
T Consensus       100 ~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~  179 (315)
T 1ixk_A          100 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL  179 (315)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG
T ss_pred             EEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChh
Confidence            3344455555667778888999999999999999999985   3699999999999999999987543  8999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      +++.            ..+.||.|++|+|.
T Consensus       180 ~~~~------------~~~~fD~Il~d~Pc  197 (315)
T 1ixk_A          180 HIGE------------LNVEFDKILLDAPC  197 (315)
T ss_dssp             GGGG------------GCCCEEEEEEECCT
T ss_pred             hccc------------ccccCCEEEEeCCC
Confidence            8752            23579999999995

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.21  E-value=1.2e-10  Score=101.13  Aligned_cols=83  Identities=22%  Similarity=0.314  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d  207 (285)
                      .+..++......++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++....+ +++++++|+.+.+.      
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------  102 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF------  102 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC------
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhccc------
Confidence            34445555555567899999999999999999999999999999999999999987554 79999999998753      


Q ss_pred             HHhhhcCCCCceEEEEc
Q 023240          208 LFERRKSSSGFAKVVAN  224 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n  224 (285)
                             .+.||+|++.
T Consensus       103 -------~~~fD~v~~~  112 (252)
T 1wzn_A          103 -------KNEFDAVTMF  112 (252)
T ss_dssp             -------CSCEEEEEEC
T ss_pred             -------CCCccEEEEc
Confidence                   3579999974

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.21  E-value=5.6e-11  Score=102.55  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+.+.++.+|||+|||+|.++..+++.   +.+|+|+|+++.+++.+.++.+.+++++++.+|+.+.....         
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~---------  142 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR---------  142 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGG---------
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhc---------
Confidence            344567889999999999999999987   37999999999988888877776678999999998743100         


Q ss_pred             cCCCCceEEEEcCCC
Q 023240          213 KSSSGFAKVVANIPF  227 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~  227 (285)
                      .....||+|++++|.
T Consensus       143 ~~~~~~D~V~~~~~~  157 (233)
T 2ipx_A          143 MLIAMVDVIFADVAQ  157 (233)
T ss_dssp             GGCCCEEEEEECCCC
T ss_pred             ccCCcEEEEEEcCCC
Confidence            234679999999883

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.21  E-value=2.5e-11  Score=104.55  Aligned_cols=85  Identities=14%  Similarity=0.192  Sum_probs=68.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~  206 (285)
                      +..++...... +.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++++...   ++++++++|+.+.+      
T Consensus        56 l~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------  128 (235)
T 3lcc_A           56 IVHLVDTSSLP-LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR------  128 (235)
T ss_dssp             HHHHHHTTCSC-CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC------
T ss_pred             HHHHHHhcCCC-CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC------
Confidence            33444444443 459999999999999999888889999999999999999998754   37999999999875      


Q ss_pred             hHHhhhcCCCCceEEEEcCCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                             ....||+|+++..++
T Consensus       129 -------~~~~fD~v~~~~~l~  143 (235)
T 3lcc_A          129 -------PTELFDLIFDYVFFC  143 (235)
T ss_dssp             -------CSSCEEEEEEESSTT
T ss_pred             -------CCCCeeEEEEChhhh
Confidence                   235899999986654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.20  E-value=1.8e-11  Score=112.20  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~  204 (285)
                      ...+.+++.+...++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.|++++..++ +++++.+|+.+..    
T Consensus       183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~----  258 (343)
T 2pjd_A          183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV----  258 (343)
T ss_dssp             HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC----
T ss_pred             HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc----
Confidence            356677787766667899999999999999999874  599999999999999999987654 6788899987642    


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                .+.||+|++|+||+.
T Consensus       259 ----------~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          259 ----------KGRFDMIISNPPFHD  273 (343)
T ss_dssp             ----------CSCEEEEEECCCCCS
T ss_pred             ----------cCCeeEEEECCCccc
Confidence                      367999999999985

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=2e-11  Score=108.15  Aligned_cols=84  Identities=24%  Similarity=0.405  Sum_probs=72.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.|++.|+++.   ++++++.+|+.++++        
T Consensus        46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~--------  114 (279)
T 3ccf_A           46 GEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY---PHLHFDVADARNFRV--------  114 (279)
T ss_dssp             CCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCCC--------
T ss_pred             HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC---CCCEEEECChhhCCc--------
Confidence            345667777778899999999999999999998889999999999999999886   589999999998763        


Q ss_pred             hhhcCCCCceEEEEcCCCCC
Q 023240          210 ERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~~  229 (285)
                           .+.||+|+++..++.
T Consensus       115 -----~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A          115 -----DKPLDAVFSNAMLHW  129 (279)
T ss_dssp             -----SSCEEEEEEESCGGG
T ss_pred             -----CCCcCEEEEcchhhh
Confidence                 367999999877643

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.20  E-value=2.2e-11  Score=108.18  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~-~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~  201 (285)
                      ......+...+.+.++.+|||+|||+|..+..+++.  + .+|+|+|+++.+++.++++++..+  +++++++|+.+++.
T Consensus        69 d~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~  148 (274)
T 3ajd_A           69 SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKD  148 (274)
T ss_dssp             CSGGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch
Confidence            333344556677788899999999999999999984  4 799999999999999999988664  89999999987652


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      ..     .   .....||+|++|+|+..
T Consensus       149 ~~-----~---~~~~~fD~Vl~d~Pcs~  168 (274)
T 3ajd_A          149 YL-----L---KNEIFFDKILLDAPCSG  168 (274)
T ss_dssp             HH-----H---HTTCCEEEEEEEECCC-
T ss_pred             hh-----h---hccccCCEEEEcCCCCC
Confidence            10     0   12467999999999853

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.20  E-value=7.8e-11  Score=102.09  Aligned_cols=121  Identities=12%  Similarity=0.102  Sum_probs=84.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      ....+.....+...+...++.+|||||||+|+++..+++.   +.+|+++|+++.+++.|+++++..+   +++++.+|+
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            4567778777777777777899999999999999999987   5799999999999999999987653   599999998


Q ss_pred             ccccchhhh----hhHHhhhcC-C-CCceEEEEcCCCCCcHHHH---HHhccCCCce
Q 023240          197 VKCHIRSHM----LSLFERRKS-S-SGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (285)
Q Consensus       197 ~~~~~~~~~----~d~~~~~~~-~-~~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~  244 (285)
                      .+.......    ..|-.. .. . +.||+|+.+.........+   .+++..|+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~-f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~l  177 (239)
T 2hnk_A          122 LETLQVLIDSKSAPSWASD-FAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLL  177 (239)
T ss_dssp             HHHHHHHHHCSSCCGGGTT-TCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHHHHhhccccccccc-ccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence            763210000    000000 01 2 6799999986654333333   2344444444

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.19  E-value=5.2e-11  Score=115.72  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=81.7

Q ss_pred             ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--------------------CCEEEEEeCCHHH
Q 023240          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--------------------GATVLAIEKDQHM  175 (285)
Q Consensus       116 ~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--------------------~~~V~giD~~~~~  175 (285)
                      ++..|+ |++++.++..|++.+.+.++.+|||.+||+|.+...+++.                    ...++|+|+++.+
T Consensus       145 ~~~~G~-fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~  223 (541)
T 2ar0_A          145 KSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT  223 (541)
T ss_dssp             -----C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHH
T ss_pred             cccCCe-eeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHH
Confidence            345677 8899999999999999888889999999999998877653                    1379999999999


Q ss_pred             HHHHHHHhhcCC--C-----eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          176 VGLVRERFASID--Q-----LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       176 v~~a~~~~~~~~--~-----v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      ++.|+.++...+  +     +.+.++|++..+.           .....||+|++||||...
T Consensus       224 ~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~-----------~~~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          224 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-----------ENLPKAHIVATNPPFGSA  274 (541)
T ss_dssp             HHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHH-----------HTSCCEEEEEECCCCTTC
T ss_pred             HHHHHHHHHHhCCCccccccCCeEeCCCccccc-----------ccccCCeEEEECCCcccc
Confidence            999999876443  3     7899999877542           234679999999999753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.19  E-value=4.6e-11  Score=109.88  Aligned_cols=75  Identities=17%  Similarity=0.306  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      ..++.+|||||||+|.++..+++.+. +|+|+|++ ++++.|+++++.++   +++++++|+.++++            +
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------~  130 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL------------P  130 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC------------S
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC------------C
Confidence            34688999999999999999999865 99999999 59999999987653   59999999999863            3


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .++||+|+++++
T Consensus       131 ~~~fD~Iis~~~  142 (349)
T 3q7e_A          131 VEKVDIIISEWM  142 (349)
T ss_dssp             SSCEEEEEECCC
T ss_pred             CCceEEEEEccc
Confidence            478999999875

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.19  E-value=1e-10  Score=100.72  Aligned_cols=86  Identities=19%  Similarity=0.223  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      .+...+...+.  ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.. ..+++++.+|+.++++      
T Consensus        42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~------  112 (242)
T 3l8d_A           42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE-GPDLSFIKGDLSSLPF------  112 (242)
T ss_dssp             THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC-BTTEEEEECBTTBCSS------
T ss_pred             HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc-cCCceEEEcchhcCCC------
Confidence            44555555544  67899999999999999999999999999999999999998853 3589999999998863      


Q ss_pred             HHhhhcCCCCceEEEEcCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                            ..+.||+|+++..++
T Consensus       113 ------~~~~fD~v~~~~~l~  127 (242)
T 3l8d_A          113 ------ENEQFEAIMAINSLE  127 (242)
T ss_dssp             ------CTTCEEEEEEESCTT
T ss_pred             ------CCCCccEEEEcChHh
Confidence                  357899999986654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.19  E-value=3.3e-11  Score=107.87  Aligned_cols=84  Identities=27%  Similarity=0.403  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEEccccccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCH  200 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-----~~v~~~~gD~~~~~  200 (285)
                      .......++..+...++ +|||||||+|.++..+++.+.+|+|+|+++.+++.|++++...     .+++++++|+.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           68 GTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             ccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            45667777787775444 9999999999999999999999999999999999999998765     47999999999976


Q ss_pred             chhhhhhHHhhhcCCCCceEEEE
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                      +             .+.||+|++
T Consensus       147 ~-------------~~~fD~v~~  156 (299)
T 3g2m_A          147 L-------------DKRFGTVVI  156 (299)
T ss_dssp             C-------------SCCEEEEEE
T ss_pred             c-------------CCCcCEEEE
Confidence            3             467998885

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.5e-10  Score=103.54  Aligned_cols=100  Identities=8%  Similarity=0.023  Sum_probs=76.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEEccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDF  196 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~---~~~~V~giD~~~~~v~~a~~~~~~~----~~v~~~~gD~  196 (285)
                      ..++.+...+..... .++.+|||||||+|..+..+++   .+.+|+|+|+++.+++.|++++...    ++++++++|+
T Consensus        20 ~y~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~   98 (299)
T 3g5t_A           20 SYPSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS   98 (299)
T ss_dssp             CCCHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT
T ss_pred             CCCHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH
Confidence            335566666666544 4678999999999999999995   4789999999999999999998754    4899999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .++++.+..  .    ...+.||+|+++..++..
T Consensus        99 ~~~~~~~~~--~----~~~~~fD~V~~~~~l~~~  126 (299)
T 3g5t_A           99 DDFKFLGAD--S----VDKQKIDMITAVECAHWF  126 (299)
T ss_dssp             TCCGGGCTT--T----TTSSCEEEEEEESCGGGS
T ss_pred             HhCCccccc--c----ccCCCeeEEeHhhHHHHh
Confidence            988742100  0    012689999998765433

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.18  E-value=1.4e-11  Score=108.82  Aligned_cols=84  Identities=13%  Similarity=0.014  Sum_probs=66.4

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCH-------HHHHHHHHHhhcC---CCeEEEEcccccccchhhhh
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ-------HMVGLVRERFASI---DQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~-------~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~  206 (285)
                      +...++.+|||+|||+|..++.+|..+++|+|+|+++       .+++.|++|.+.+   ++++++++|+.++...    
T Consensus        79 ~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~----  154 (258)
T 2r6z_A           79 VNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA----  154 (258)
T ss_dssp             TTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH----
T ss_pred             hCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh----
Confidence            3444678999999999999999999989999999999       9999999887644   2599999999875210    


Q ss_pred             hHHhhhcCC--CCceEEEEcCCCCCc
Q 023240          207 SLFERRKSS--SGFAKVVANIPFNIS  230 (285)
Q Consensus       207 d~~~~~~~~--~~~D~Vv~n~P~~~~  230 (285)
                            ...  ..||+|+.||||...
T Consensus       155 ------~~~~~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          155 ------LVKTQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             ------HHHHHCCCSEEEECCCC---
T ss_pred             ------hhccCCCccEEEECCCCCCc
Confidence                  111  579999999998653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.18  E-value=4e-11  Score=112.03  Aligned_cols=88  Identities=17%  Similarity=0.195  Sum_probs=69.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccchhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~~~~~  205 (285)
                      ..++..+  .++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|++|++.++    +++++++|+.+....   
T Consensus       212 ~~~l~~~--~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~---  286 (396)
T 3c0k_A          212 RLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRT---  286 (396)
T ss_dssp             HHHHHHH--CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHH---
T ss_pred             HHHHHHh--hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHH---
Confidence            4444444  367899999999999999999985 599999999999999999987542    789999999876311   


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                        +.   .....||+|++|||+.
T Consensus       287 --~~---~~~~~fD~Ii~dpP~~  304 (396)
T 3c0k_A          287 --YR---DRGEKFDVIVMDPPKF  304 (396)
T ss_dssp             --HH---HTTCCEEEEEECCSST
T ss_pred             --HH---hcCCCCCEEEECCCCC
Confidence              00   1246799999999984

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.18  E-value=7.9e-11  Score=107.37  Aligned_cols=84  Identities=18%  Similarity=0.340  Sum_probs=68.5

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~  206 (285)
                      +.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ ++++.|+++++.+   ++++++.+|+.++++     
T Consensus        28 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----  101 (328)
T 1g6q_1           28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL-----  101 (328)
T ss_dssp             HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC-----
T ss_pred             HHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC-----
Confidence            3444444445788999999999999999998865 99999999 6999999998765   379999999998763     


Q ss_pred             hHHhhhcCCCCceEEEEcCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                             +..+||+|+++++.
T Consensus       102 -------~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1          102 -------PFPKVDIIISEWMG  115 (328)
T ss_dssp             -------SSSCEEEEEECCCB
T ss_pred             -------CCCcccEEEEeCch
Confidence                   33679999999763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.18  E-value=5.8e-11  Score=115.39  Aligned_cols=102  Identities=18%  Similarity=0.124  Sum_probs=81.9

Q ss_pred             CccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-----------------CCEEEEEeCCHHHHH
Q 023240          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----------------GATVLAIEKDQHMVG  177 (285)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-----------------~~~V~giD~~~~~v~  177 (285)
                      .++..|+ |+|++.++..|++.+.+.++ +|||.+||+|.+...+++.                 ...++|+|+++.++.
T Consensus       220 ~~k~~G~-fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~  297 (544)
T 3khk_A          220 EGKQGGQ-YYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWK  297 (544)
T ss_dssp             TTCCSTT-TCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHH
T ss_pred             hCccCCe-EeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHH
Confidence            3455677 99999999999999988765 9999999999988776432                 358999999999999


Q ss_pred             HHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          178 LVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       178 ~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      .|+.|+...+   ++.+.++|.+..+.           .....||+||+||||..
T Consensus       298 lA~~Nl~l~gi~~~i~i~~gDtL~~~~-----------~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          298 LAAMNMVIRGIDFNFGKKNADSFLDDQ-----------HPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             HHHHHHHHTTCCCBCCSSSCCTTTSCS-----------CTTCCEEEEEECCCSSC
T ss_pred             HHHHHHHHhCCCcccceeccchhcCcc-----------cccccccEEEECCCcCC
Confidence            9999976543   44448888776542           23468999999999975

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.18  E-value=8.3e-11  Score=103.62  Aligned_cols=84  Identities=23%  Similarity=0.313  Sum_probs=70.1

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhH
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      +.......++.+|||||||+|..+..+++.  +.+|+|+|+++.+++.|++++...  ++++++.+|+.++++       
T Consensus        29 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-------  101 (276)
T 3mgg_A           29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF-------  101 (276)
T ss_dssp             HHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS-------
T ss_pred             HhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC-------
Confidence            333344457889999999999999999988  679999999999999999998755  389999999998763       


Q ss_pred             HhhhcCCCCceEEEEcCCCC
Q 023240          209 FERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~  228 (285)
                           ..+.||+|+++..++
T Consensus       102 -----~~~~fD~v~~~~~l~  116 (276)
T 3mgg_A          102 -----EDSSFDHIFVCFVLE  116 (276)
T ss_dssp             -----CTTCEEEEEEESCGG
T ss_pred             -----CCCCeeEEEEechhh
Confidence                 457899999986653

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.18  E-value=1.1e-10  Score=98.32  Aligned_cols=78  Identities=14%  Similarity=0.118  Sum_probs=63.1

Q ss_pred             CCCCCEEEEEcCcccHHH-HHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          139 VQEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t-~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ..++.+|||+|||+|..+ ..++..+.+|+|+|+++.+++.|++++... .+++++.+|+.++++            ..+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~------------~~~   88 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPF------------KDE   88 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCS------------CTT
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCC------------CCC
Confidence            346789999999999974 455556889999999999999999987643 479999999998763            346


Q ss_pred             CceEEEEcCCCC
Q 023240          217 GFAKVVANIPFN  228 (285)
Q Consensus       217 ~~D~Vv~n~P~~  228 (285)
                      .||+|+++..++
T Consensus        89 ~fD~v~~~~~l~  100 (209)
T 2p8j_A           89 SMSFVYSYGTIF  100 (209)
T ss_dssp             CEEEEEECSCGG
T ss_pred             ceeEEEEcChHH
Confidence            899999975543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.18  E-value=1e-10  Score=108.69  Aligned_cols=83  Identities=20%  Similarity=0.290  Sum_probs=69.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~  205 (285)
                      .+.+.......++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++++.++   +++++++|+.++++    
T Consensus        52 ~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----  126 (376)
T 3r0q_C           52 FNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL----  126 (376)
T ss_dssp             HHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC----
T ss_pred             HHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc----
Confidence            34444444556788999999999999999999876 99999999 99999999987653   59999999998863    


Q ss_pred             hhHHhhhcCCCCceEEEEcCC
Q 023240          206 LSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                               +++||+|++++.
T Consensus       127 ---------~~~~D~Iv~~~~  138 (376)
T 3r0q_C          127 ---------PEKVDVIISEWM  138 (376)
T ss_dssp             ---------SSCEEEEEECCC
T ss_pred             ---------CCcceEEEEcCh
Confidence                     278999999873

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.17  E-value=1.3e-10  Score=99.93  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhh
Q 023240          128 EINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       128 ~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~  204 (285)
                      .....+.+.+...  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....+ +++++++|+.+.++   
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---   98 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI---   98 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC---
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCc---
Confidence            4455555555443  67899999999999999999988999999999999999999987655 89999999988753   


Q ss_pred             hhhHHhhhcCCCCceEEEEcC-CCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANI-PFNI  229 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~-P~~~  229 (285)
                               . +.||+|+++. .++.
T Consensus        99 ---------~-~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           99 ---------N-RKFDLITCCLDSTNY  114 (246)
T ss_dssp             ---------S-CCEEEEEECTTGGGG
T ss_pred             ---------c-CCceEEEEcCccccc
Confidence                     2 6799999987 5543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.17  E-value=5.6e-11  Score=105.66  Aligned_cols=89  Identities=17%  Similarity=0.259  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC------CCeEEEEccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~------~~v~~~~gD~~~~~  200 (285)
                      ......+...+...++.+|||||||+|..+..+++.+.+|+|+|+|+.+++.|+++....      .++.+..+|+.+++
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            555666777776667889999999999999999999999999999999999999876321      37899999998875


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEc
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                      .     ++    ...+.||+|+++
T Consensus       123 ~-----~~----~~~~~fD~V~~~  137 (293)
T 3thr_A          123 K-----DV----PAGDGFDAVICL  137 (293)
T ss_dssp             H-----HS----CCTTCEEEEEEC
T ss_pred             c-----cc----ccCCCeEEEEEc
Confidence            1     00    134689999986

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.17  E-value=3.2e-11  Score=105.85  Aligned_cols=95  Identities=16%  Similarity=0.132  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++.+|||||||+|..++.++..  +.+|+++|+++.+++.|+++++..+  +++++++|+.+++..+         ...
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~---------~~~  149 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA---------GHR  149 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST---------TTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc---------ccC
Confidence            45789999999999999999986  6799999999999999999987653  7999999998875310         123


Q ss_pred             CCceEEEEcCCCCCcHHHH---HHhccCCCce
Q 023240          216 SGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (285)
Q Consensus       216 ~~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~  244 (285)
                      ..||+|+++--- ....++   .+++..|+.+
T Consensus       150 ~~fD~I~s~a~~-~~~~ll~~~~~~LkpgG~l  180 (249)
T 3g89_A          150 EAYARAVARAVA-PLCVLSELLLPFLEVGGAA  180 (249)
T ss_dssp             TCEEEEEEESSC-CHHHHHHHHGGGEEEEEEE
T ss_pred             CCceEEEECCcC-CHHHHHHHHHHHcCCCeEE
Confidence            679999997422 123333   3445555544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.17  E-value=8.4e-11  Score=102.04  Aligned_cols=95  Identities=9%  Similarity=0.146  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++.+|||||||+|..+..++..  +.+|+|+|+++.+++.|+++.+..  ++++++++|+.+++...         ...
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---------~~~  139 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRK---------DVR  139 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCT---------TTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccc---------ccc
Confidence            46789999999999999999864  679999999999999999988754  37999999998875310         114


Q ss_pred             CCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          216 SGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       216 ~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      +.||+|+++.. .....+++   +++.+|+.+
T Consensus       140 ~~fD~V~~~~~-~~~~~~l~~~~~~LkpgG~l  170 (240)
T 1xdz_A          140 ESYDIVTARAV-ARLSVLSELCLPLVKKNGLF  170 (240)
T ss_dssp             TCEEEEEEECC-SCHHHHHHHHGGGEEEEEEE
T ss_pred             CCccEEEEecc-CCHHHHHHHHHHhcCCCCEE
Confidence            67999999763 33344443   444445544

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.17  E-value=1.1e-10  Score=101.43  Aligned_cols=117  Identities=11%  Similarity=0.100  Sum_probs=81.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      ....+.....+...+...++.+|||||||+|+++..+++.   +.+|+++|+++.+++.|+++++..+   +++++.+|+
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            3445655555555555557789999999999999999986   6799999999999999999987653   699999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      .+....     +.+.-...+.||+|+.+.+.......++   +++.+|+.+
T Consensus       132 ~~~l~~-----l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~l  177 (237)
T 3c3y_A          132 MLALDN-----LLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIV  177 (237)
T ss_dssp             HHHHHH-----HHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHH-----HHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEE
Confidence            875210     0000001467999999876544444433   444444544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.17  E-value=1.2e-10  Score=101.42  Aligned_cols=88  Identities=17%  Similarity=0.222  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~  204 (285)
                      ......++..+...++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.++++.   ++++++.+|+.+++    
T Consensus        19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~----   91 (259)
T 2p35_A           19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLATWK----   91 (259)
T ss_dssp             GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTTCC----
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhhcC----
Confidence            455567777777778889999999999999999988  789999999999999999883   58999999998875    


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                               ..+.||+|+++..++..
T Consensus        92 ---------~~~~fD~v~~~~~l~~~  108 (259)
T 2p35_A           92 ---------PAQKADLLYANAVFQWV  108 (259)
T ss_dssp             ---------CSSCEEEEEEESCGGGS
T ss_pred             ---------ccCCcCEEEEeCchhhC
Confidence                     23679999998876554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.17  E-value=5.3e-11  Score=101.04  Aligned_cols=87  Identities=17%  Similarity=0.276  Sum_probs=69.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ...++..+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++    +++.++.+|+.++.....     
T Consensus        41 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~-----  111 (227)
T 3e8s_A           41 DQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKV-----  111 (227)
T ss_dssp             HHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCS-----
T ss_pred             cHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh----cccccchhhHHhhccccc-----
Confidence            34455566556778999999999999999999999999999999999999988    578899999887621100     


Q ss_pred             hhhcCCCCceEEEEcCCCC
Q 023240          210 ERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~  228 (285)
                         .....||+|+++..++
T Consensus       112 ---~~~~~fD~v~~~~~l~  127 (227)
T 3e8s_A          112 ---PVGKDYDLICANFALL  127 (227)
T ss_dssp             ---CCCCCEEEEEEESCCC
T ss_pred             ---ccCCCccEEEECchhh
Confidence               2345599999987765

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.16  E-value=4.7e-11  Score=97.53  Aligned_cols=80  Identities=14%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      +++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++   .++++++.+|   .+            
T Consensus         9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~v~~~~~d---~~------------   70 (170)
T 3i9f_A            9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---FDSVITLSDP---KE------------   70 (170)
T ss_dssp             THHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---CTTSEEESSG---GG------------
T ss_pred             HHHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---CCCcEEEeCC---CC------------
Confidence            44555666788999999999999999999866999999999999999998   4589999999   33            


Q ss_pred             cCCCCceEEEEcCCCCCc
Q 023240          213 KSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~  230 (285)
                      ...+.||+|+++..++..
T Consensus        71 ~~~~~~D~v~~~~~l~~~   88 (170)
T 3i9f_A           71 IPDNSVDFILFANSFHDM   88 (170)
T ss_dssp             SCTTCEEEEEEESCSTTC
T ss_pred             CCCCceEEEEEccchhcc
Confidence            245789999998776543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.15  E-value=1.4e-10  Score=101.59  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=64.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++++.   +++++++|+.++++             .+.||+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~d~~~~~~-------------~~~fD~  113 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP---DAVLHHGDMRDFSL-------------GRRFSA  113 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT---TSEEEECCTTTCCC-------------SCCEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCEEEECChHHCCc-------------cCCcCE
Confidence            56899999999999999999998899999999999999999864   89999999998752             478999


Q ss_pred             EEEcC-CCCC
Q 023240          221 VVANI-PFNI  229 (285)
Q Consensus       221 Vv~n~-P~~~  229 (285)
                      |+++. .++.
T Consensus       114 v~~~~~~l~~  123 (263)
T 3pfg_A          114 VTCMFSSIGH  123 (263)
T ss_dssp             EEECTTGGGG
T ss_pred             EEEcCchhhh
Confidence            99986 5543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.15  E-value=3.3e-11  Score=112.96  Aligned_cols=79  Identities=15%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.+|||+|||+|..++.+++.+.+|++||+|+.+++.|++|++.+    ++++++++|+.+....          ....
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~----------~~~~  162 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL----------IKTF  162 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH----------HHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh----------ccCC
Confidence            4789999999999999999998999999999999999999998854    4799999999885210          1124


Q ss_pred             CceEEEEcCCCCC
Q 023240          217 GFAKVVANIPFNI  229 (285)
Q Consensus       217 ~~D~Vv~n~P~~~  229 (285)
                      .||+|+.||||..
T Consensus       163 ~fDvV~lDPPrr~  175 (410)
T 3ll7_A          163 HPDYIYVDPARRS  175 (410)
T ss_dssp             CCSEEEECCEEC-
T ss_pred             CceEEEECCCCcC
Confidence            6999999999875

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.14  E-value=2e-10  Score=97.10  Aligned_cols=84  Identities=18%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhH
Q 023240          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       130 ~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      ...++..+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++  ...++++++++|+.+. .       
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~-~-------  103 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW-T-------  103 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC-C-------
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC-C-------
Confidence            344555554 4567899999999999999999999999999999999999998  2235899999999886 2       


Q ss_pred             HhhhcCCCCceEEEEcCCCC
Q 023240          209 FERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~  228 (285)
                           ..+.||+|+++..++
T Consensus       104 -----~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A          104 -----PDRQWDAVFFAHWLA  118 (218)
T ss_dssp             -----CSSCEEEEEEESCGG
T ss_pred             -----CCCceeEEEEechhh
Confidence                 347899999986543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.14  E-value=2.9e-10  Score=95.35  Aligned_cols=82  Identities=15%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHH
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ..++..+.  ++ +|||||||+|.++..+++.+.+|+|+|+++.+++.|+++....+ +++++.+|+.+.++        
T Consensus        22 ~~~~~~~~--~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--------   90 (202)
T 2kw5_A           22 VSVANQIP--QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDI--------   90 (202)
T ss_dssp             HHHHHHSC--SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSC--------
T ss_pred             HHHHHhCC--CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCC--------
Confidence            33444433  45 99999999999999999988999999999999999999986543 89999999988763        


Q ss_pred             hhhcCCCCceEEEEcCCC
Q 023240          210 ERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~  227 (285)
                          ..+.||+|+++..+
T Consensus        91 ----~~~~fD~v~~~~~~  104 (202)
T 2kw5_A           91 ----VADAWEGIVSIFCH  104 (202)
T ss_dssp             ----CTTTCSEEEEECCC
T ss_pred             ----CcCCccEEEEEhhc
Confidence                34679999997554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.14  E-value=1.2e-10  Score=98.58  Aligned_cols=82  Identities=20%  Similarity=0.221  Sum_probs=67.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhH
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      .+..++..+  .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++    +++++.+|+.+++        
T Consensus        33 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~--------   98 (211)
T 3e23_A           33 TLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----GRPVRTMLFHQLD--------   98 (211)
T ss_dssp             HHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC--------
T ss_pred             HHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----CCceEEeeeccCC--------
Confidence            334444433  35789999999999999999999899999999999999999987    6788999998875        


Q ss_pred             HhhhcCCCCceEEEEcCCCCC
Q 023240          209 FERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                           ..+.||+|+++..++.
T Consensus        99 -----~~~~fD~v~~~~~l~~  114 (211)
T 3e23_A           99 -----AIDAYDAVWAHACLLH  114 (211)
T ss_dssp             -----CCSCEEEEEECSCGGG
T ss_pred             -----CCCcEEEEEecCchhh
Confidence                 3478999999876543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.14  E-value=1.4e-10  Score=108.22  Aligned_cols=98  Identities=22%  Similarity=0.246  Sum_probs=74.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~  198 (285)
                      ++.++.....++..+. .++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++|++.++   +++++++|+.+
T Consensus       200 ~f~~~~~~~~~~~~~~-~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~  278 (396)
T 2as0_A          200 FFLDQRENRLALEKWV-QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  278 (396)
T ss_dssp             CCSTTHHHHHHHGGGC-CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             ccCCHHHHHHHHHHHh-hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHH
Confidence            3334444444444442 367899999999999999999985 499999999999999999998764   79999999987


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      ....     +.   .....||+|++|||+..
T Consensus       279 ~~~~-----~~---~~~~~fD~Vi~dpP~~~  301 (396)
T 2as0_A          279 EMEK-----LQ---KKGEKFDIVVLDPPAFV  301 (396)
T ss_dssp             HHHH-----HH---HTTCCEEEEEECCCCSC
T ss_pred             HHHH-----HH---hhCCCCCEEEECCCCCC
Confidence            6321     00   12468999999999843

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.13  E-value=3.8e-10  Score=93.32  Aligned_cols=73  Identities=22%  Similarity=0.383  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++..   +++++.+|+.+.++            ..+.|
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~---~~~~~~~d~~~~~~------------~~~~~  108 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP---EARWVVGDLSVDQI------------SETDF  108 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT---TSEEEECCTTTSCC------------CCCCE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC---CCcEEEcccccCCC------------CCCce
Confidence            3467899999999999999999998999999999999999999873   69999999988753            34679


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |+|+++++
T Consensus       109 D~i~~~~~  116 (195)
T 3cgg_A          109 DLIVSAGN  116 (195)
T ss_dssp             EEEEECCC
T ss_pred             eEEEECCc
Confidence            99999854

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.13  E-value=2.5e-10  Score=96.19  Aligned_cols=95  Identities=15%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240          128 EINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (285)
Q Consensus       128 ~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~  200 (285)
                      .+...++..+...   ++.+|||+|||+|..+..++..  +.+|+++|+++.+++.|++++...+  +++++++|+.+.+
T Consensus        49 ~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  128 (207)
T 1jsx_A           49 MLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP  128 (207)
T ss_dssp             HHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC
T ss_pred             HHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC
Confidence            3455555555432   3789999999999999999986  6799999999999999999987653  6999999998864


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHH
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~  236 (285)
                                   ..+.||+|+++.. .....++..
T Consensus       129 -------------~~~~~D~i~~~~~-~~~~~~l~~  150 (207)
T 1jsx_A          129 -------------SEPPFDGVISRAF-ASLNDMVSW  150 (207)
T ss_dssp             -------------CCSCEEEEECSCS-SSHHHHHHH
T ss_pred             -------------ccCCcCEEEEecc-CCHHHHHHH
Confidence                         2367999998742 333445543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.13  E-value=2e-10  Score=108.45  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHH-------HHHhhcC----CCeEEE
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLV-------RERFASI----DQLKVL  192 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a-------~~~~~~~----~~v~~~  192 (285)
                      .+.++..+++.+.+.++.+|||||||+|.+++.+|.. + .+|+|||+++.+++.|       ++++...    ++++++
T Consensus       227 ~p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          227 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            3888899999999889999999999999999999986 5 4899999999999988       7777643    489999


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      ++|....+..   +.     ...+.||+|++|...
T Consensus       307 ~gD~~~~~~~---~~-----~~~~~FDvIvvn~~l  333 (433)
T 1u2z_A          307 LKKSFVDNNR---VA-----ELIPQCDVILVNNFL  333 (433)
T ss_dssp             ESSCSTTCHH---HH-----HHGGGCSEEEECCTT
T ss_pred             EcCccccccc---cc-----cccCCCCEEEEeCcc
Confidence            9875532110   00     012569999997543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.13  E-value=2.7e-10  Score=100.08  Aligned_cols=90  Identities=16%  Similarity=0.264  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.|+++.   +++.++.+|+.++++            ..+.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~------------~~~~  148 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLPF------------SDTS  148 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCSB------------CTTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhhCCC------------CCCc
Confidence            46789999999999999999987  679999999999999999885   478999999988764            3467


Q ss_pred             ceEEEEcCCCCCcHHHHHHhccCCCce
Q 023240          218 FAKVVANIPFNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       218 ~D~Vv~n~P~~~~~~i~~~l~~~g~~~  244 (285)
                      ||+|+++........+.+.|.++|.++
T Consensus       149 fD~v~~~~~~~~l~~~~~~L~pgG~l~  175 (269)
T 1p91_A          149 MDAIIRIYAPCKAEELARVVKPGGWVI  175 (269)
T ss_dssp             EEEEEEESCCCCHHHHHHHEEEEEEEE
T ss_pred             eeEEEEeCChhhHHHHHHhcCCCcEEE
Confidence            999999876666666655555555444

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.12  E-value=7.2e-11  Score=109.82  Aligned_cols=81  Identities=20%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++|++.++  +++++++|+.+....     +.   .....|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~-----~~---~~~~~f  280 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRR-----LE---KEGERF  280 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHH-----HH---HTTCCE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHH-----HH---hcCCCe
Confidence            67899999999999999999887799999999999999999998764  699999999876321     00   124689


Q ss_pred             eEEEEcCCCCC
Q 023240          219 AKVVANIPFNI  229 (285)
Q Consensus       219 D~Vv~n~P~~~  229 (285)
                      |+|++|||+..
T Consensus       281 D~Ii~dpP~~~  291 (382)
T 1wxx_A          281 DLVVLDPPAFA  291 (382)
T ss_dssp             EEEEECCCCSC
T ss_pred             eEEEECCCCCC
Confidence            99999999843

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.12  E-value=2e-10  Score=114.80  Aligned_cols=91  Identities=15%  Similarity=0.187  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKC  199 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~  199 (285)
                      .+....+.++..+.  ++.+|||+|||+|.+++.++..++ +|++||+|+.+++.|++|++.++    +++++++|+.+.
T Consensus       525 ~d~r~~r~~l~~~~--~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~  602 (703)
T 3v97_A          525 LDHRIARRMLGQMS--KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW  602 (703)
T ss_dssp             GGGHHHHHHHHHHC--TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH
T ss_pred             ccHHHHHHHHHHhc--CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH
Confidence            33444444444432  678999999999999999998765 69999999999999999998663    699999999874


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ..           ....+||+|++|||+.
T Consensus       603 l~-----------~~~~~fD~Ii~DPP~f  620 (703)
T 3v97_A          603 LR-----------EANEQFDLIFIDPPTF  620 (703)
T ss_dssp             HH-----------HCCCCEEEEEECCCSB
T ss_pred             HH-----------hcCCCccEEEECCccc
Confidence            21           2346899999999974

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.12  E-value=1.9e-10  Score=99.46  Aligned_cols=113  Identities=13%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~  197 (285)
                      ...+.....+...+...++.+|||||||+|+++..+++.   +.+|+++|+++.+++.|+++++..   ++++++.+|+.
T Consensus        55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~  134 (232)
T 3cbg_A           55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL  134 (232)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            445666555555555556789999999999999999986   569999999999999999998654   36999999987


Q ss_pred             cccchhhhhhHHhhhcCC--CCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240          198 KCHIRSHMLSLFERRKSS--SGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~--~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~  244 (285)
                      +....     +.   ...  +.||+|+.+.+.......++   .++.+|+.+
T Consensus       135 ~~l~~-----l~---~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~l  178 (232)
T 3cbg_A          135 ATLEQ-----LT---QGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLM  178 (232)
T ss_dssp             HHHHH-----HH---TSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             HHHHH-----HH---hcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence            63210     00   112  67999999877443333343   344444444

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.12  E-value=1.5e-10  Score=105.87  Aligned_cols=75  Identities=16%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++.+|||+|||+|.+++. ++.+.+|+|+|+|+.+++.|++|++.++   +++++++|+.+..               .
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------------~  257 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------------V  257 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------C
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------C
Confidence            4678999999999999999 8766799999999999999999988663   7999999998852               6


Q ss_pred             CceEEEEcCCCCCc
Q 023240          217 GFAKVVANIPFNIS  230 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~  230 (285)
                      .||+|++|||+...
T Consensus       258 ~fD~Vi~dpP~~~~  271 (336)
T 2yx1_A          258 KGNRVIMNLPKFAH  271 (336)
T ss_dssp             CEEEEEECCTTTGG
T ss_pred             CCcEEEECCcHhHH
Confidence            79999999997643

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.12  E-value=2.1e-10  Score=98.68  Aligned_cols=82  Identities=13%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       131 ~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ..+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++...  +++++++|+.+.+         
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~~---------   99 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQ---------   99 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCC---------
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHcC---------
Confidence            44455543 23677899999999999999999888999999999999999999764  8999999998862         


Q ss_pred             hhhcCCCCceEEEEcCCC
Q 023240          210 ERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~  227 (285)
                          ..+.||+|+++-.+
T Consensus       100 ----~~~~fD~v~~~~~l  113 (250)
T 2p7i_A          100 ----LPRRYDNIVLTHVL  113 (250)
T ss_dssp             ----CSSCEEEEEEESCG
T ss_pred             ----cCCcccEEEEhhHH
Confidence                34679999997554

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.11  E-value=4e-10  Score=96.92  Aligned_cols=83  Identities=16%  Similarity=0.247  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~  205 (285)
                      ..+.+.+...+.  ++.+|||+|||+|.++..+++. .+|+|+|+++.+++.|+++.... .+++++.+|+.+.+.    
T Consensus        21 ~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----   93 (243)
T 3d2l_A           21 PEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELEL----   93 (243)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCC----
T ss_pred             HHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCC----
Confidence            345566666654  4689999999999999999988 89999999999999999998754 379999999988752    


Q ss_pred             hhHHhhhcCCCCceEEEEcC
Q 023240          206 LSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~  225 (285)
                               ...||+|+++.
T Consensus        94 ---------~~~fD~v~~~~  104 (243)
T 3d2l_A           94 ---------PEPVDAITILC  104 (243)
T ss_dssp             ---------SSCEEEEEECT
T ss_pred             ---------CCCcCEEEEeC
Confidence                     26799999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.11  E-value=3.5e-10  Score=103.88  Aligned_cols=87  Identities=18%  Similarity=0.234  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (285)
                      ...+.+++.+...++.+|||||||+|.++..+++.+. +|+|+|+++ +++.|+++++.+   ++++++.+|+.++++  
T Consensus        37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~--  113 (348)
T 2y1w_A           37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL--  113 (348)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--
T ss_pred             HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC--
Confidence            3455677777767889999999999999999998864 999999996 889999988755   479999999998753  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                 +.+||+|++++++.
T Consensus       114 -----------~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A          114 -----------PEQVDIIISEPMGY  127 (348)
T ss_dssp             -----------SSCEEEEEECCCBT
T ss_pred             -----------CCceeEEEEeCchh
Confidence                       25799999997743

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.11  E-value=2.6e-10  Score=99.18  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc--------CCCeEEEEccccc-ccchhhhhhHH
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--------IDQLKVLQEDFVK-CHIRSHMLSLF  209 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~--------~~~v~~~~gD~~~-~~~~~~~~d~~  209 (285)
                      ++.+|||||||+|.++..+|+.  +..|+|||+++.|++.|++++..        .+|++++++|+.+ ++..       
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~-------  118 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNF-------  118 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHH-------
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhh-------
Confidence            5678999999999999999987  57999999999999999987642        2589999999987 4310       


Q ss_pred             hhhcCCCCceEEEEcCC
Q 023240          210 ERRKSSSGFAKVVANIP  226 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P  226 (285)
                         ...+.+|.|+.+.|
T Consensus       119 ---~~~~~~D~v~~~~~  132 (235)
T 3ckk_A          119 ---FYKGQLTKMFFLFP  132 (235)
T ss_dssp             ---CCTTCEEEEEEESC
T ss_pred             ---CCCcCeeEEEEeCC
Confidence               23568999998754

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.11  E-value=4.8e-10  Score=96.90  Aligned_cols=83  Identities=14%  Similarity=0.266  Sum_probs=64.5

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       129 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      +...+...+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++      ++++.+|+.+....     
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~-----   96 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKS-----   96 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT------SEEECSCHHHHHHT-----
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cceeeccHHHHhhh-----
Confidence            3444444443 34568999999999999999999998999999999999999876      78899998775200     


Q ss_pred             HHhhhcCCCCceEEEEcCCC
Q 023240          208 LFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~  227 (285)
                           ...++||+|+++-.+
T Consensus        97 -----~~~~~fD~i~~~~~l  111 (240)
T 3dli_A           97 -----LPDKYLDGVMISHFV  111 (240)
T ss_dssp             -----SCTTCBSEEEEESCG
T ss_pred             -----cCCCCeeEEEECCch
Confidence                 245789999997554

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.11  E-value=1.6e-10  Score=107.35  Aligned_cols=86  Identities=19%  Similarity=0.229  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC----------CCeEEEEcccccccchhhh
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI----------DQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~----------~~v~~~~gD~~~~~~~~~~  205 (285)
                      ..++.+|||||||+|..+..+++.   +.+|+|+|+++.+++.|+++++..          ++++++.+|+.++..... 
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS-
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc-
Confidence            346789999999999999999885   469999999999999999987532          589999999988621000 


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          206 LSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                           .....+.||+|+++..++..
T Consensus       160 -----~~~~~~~fD~V~~~~~l~~~  179 (383)
T 4fsd_A          160 -----EGVPDSSVDIVISNCVCNLS  179 (383)
T ss_dssp             -----CCCCTTCEEEEEEESCGGGC
T ss_pred             -----CCCCCCCEEEEEEccchhcC
Confidence                 00245789999999876544

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.10  E-value=1.3e-10  Score=102.65  Aligned_cols=88  Identities=17%  Similarity=0.255  Sum_probs=68.2

Q ss_pred             HHHHHhcCCCC--CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc----------C-CCeEEEEccccc
Q 023240          132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS----------I-DQLKVLQEDFVK  198 (285)
Q Consensus       132 ~l~~~l~~~~~--~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~----------~-~~v~~~~gD~~~  198 (285)
                      .+.+.+.+.++  .+|||+|||+|..++.++..+++|++||+++.+++.++.+++.          . .+++++++|+.+
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~  156 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence            34455555566  8999999999999999999988999999999887777666431          1 368999999987


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      +..           .....||+|+.||||...
T Consensus       157 ~L~-----------~~~~~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          157 ALT-----------DITPRPQVVYLDPMFPHK  177 (258)
T ss_dssp             HST-----------TCSSCCSEEEECCCCCCC
T ss_pred             HHH-----------hCcccCCEEEEcCCCCCc
Confidence            521           112369999999999654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.10  E-value=2.7e-10  Score=111.29  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      .+.+|||||||.|.++..||+.|++|+|||.++.+++.|+.+....+  ++++.++|+.++.-.          ...++|
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~----------~~~~~f  135 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA----------LEEGEF  135 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH----------CCTTSC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh----------ccCCCc
Confidence            46799999999999999999999999999999999999999987665  789999999887321          245789


Q ss_pred             eEEEEcCCC
Q 023240          219 AKVVANIPF  227 (285)
Q Consensus       219 D~Vv~n~P~  227 (285)
                      |+|++.-.+
T Consensus       136 D~v~~~e~~  144 (569)
T 4azs_A          136 DLAIGLSVF  144 (569)
T ss_dssp             SEEEEESCH
T ss_pred             cEEEECcch
Confidence            999986544

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.10  E-value=4.2e-10  Score=97.36  Aligned_cols=84  Identities=12%  Similarity=0.117  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +.++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++.. ..+++++++|+.+.+.....       .....|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~-------~~~~~~  125 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT-AANISYRLLDGLVPEQAAQI-------HSEIGD  125 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC-CTTEEEEECCTTCHHHHHHH-------HHHHCS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc-ccCceEEECccccccccccc-------ccccCc
Confidence            3467899999999999999999998899999999999999999874 34899999999987643211       112358


Q ss_pred             eEEEEcCCCCCc
Q 023240          219 AKVVANIPFNIS  230 (285)
Q Consensus       219 D~Vv~n~P~~~~  230 (285)
                      |+|+++..++..
T Consensus       126 d~v~~~~~~~~~  137 (245)
T 3ggd_A          126 ANIYMRTGFHHI  137 (245)
T ss_dssp             CEEEEESSSTTS
T ss_pred             cEEEEcchhhcC
Confidence            999998655433

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.10  E-value=1.8e-10  Score=103.52  Aligned_cols=79  Identities=18%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHH--h-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhh
Q 023240          138 AVQEGDIVLEIGPGTGSLTNVLLN--A-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~--~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .+.++.+|||||||+|..+..++.  . +.+|+|+|+++.+++.|++++...+   +++++++|+.++++          
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------  184 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT----------  184 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC----------
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc----------
Confidence            345788999999999999999852  2 6799999999999999999987653   59999999999863          


Q ss_pred             hcCCCCceEEEEcCCCCC
Q 023240          212 RKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~  229 (285)
                        . +.||+|+++.+++.
T Consensus       185 --~-~~fD~v~~~~~~~~  199 (305)
T 3ocj_A          185 --R-EGYDLLTSNGLNIY  199 (305)
T ss_dssp             --C-SCEEEEECCSSGGG
T ss_pred             --c-CCeEEEEECChhhh
Confidence              3 78999999887653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.09  E-value=4.7e-10  Score=112.10  Aligned_cols=98  Identities=12%  Similarity=0.152  Sum_probs=80.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---------------------------------------
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---------------------------------------  163 (285)
                      ..+.+.++..|+....+.++..|||++||+|.+.+.+|..+                                       
T Consensus       172 apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          172 APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             CSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            45668889999999998888899999999999988776531                                       


Q ss_pred             -----CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          164 -----ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       164 -----~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                           .+|+|+|+|+.+++.|+.|+...+   .+++.++|+.++..+          ...+.+|+||+||||...
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~----------~~~~~~d~Iv~NPPYG~R  316 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP----------LPKGPYGTVLSNPPYGER  316 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS----------CTTCCCCEEEECCCCCC-
T ss_pred             cccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc----------cccCCCCEEEeCCCcccc
Confidence                 479999999999999999998765   489999999987421          112379999999999753

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.09  E-value=2.9e-10  Score=113.76  Aligned_cols=90  Identities=9%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhc--------CCCeEEEEccc
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFAS--------IDQLKVLQEDF  196 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~--------~~~v~~~~gD~  196 (285)
                      ..+..+++.+...++.+|||||||+|.++..+++.+   .+|+|||+++.|++.|++++..        .++++++++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            456667777777788999999999999999999986   7999999999999999986541        24799999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      .++++            ..+.||+|+++-.++.
T Consensus       788 ~dLp~------------~d~sFDlVV~~eVLeH  808 (950)
T 3htx_A          788 LEFDS------------RLHDVDIGTCLEVIEH  808 (950)
T ss_dssp             TSCCT------------TSCSCCEEEEESCGGG
T ss_pred             HhCCc------------ccCCeeEEEEeCchhh
Confidence            99874            3477999999866543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.09  E-value=1.9e-10  Score=97.88  Aligned_cols=84  Identities=18%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhh----cC--CCeEEEEcccccccchh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA----SI--DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~----~~--~~v~~~~gD~~~~~~~~  203 (285)
                      ..+..+.+.++.+|||+|||+|.++..+++.  +.+|+|+|+++.|++.+.++..    ..  ++++++++|+.++++. 
T Consensus        18 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~-   96 (218)
T 3mq2_A           18 AEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL-   96 (218)
T ss_dssp             HHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC-
T ss_pred             HHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC-
Confidence            3445555667889999999999999999998  6799999999998886443332    22  3899999999998742 


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                 .+. |.++...++.
T Consensus        97 -----------~~~-d~v~~~~~~~  109 (218)
T 3mq2_A           97 -----------SGV-GELHVLMPWG  109 (218)
T ss_dssp             -----------CCE-EEEEEESCCH
T ss_pred             -----------CCC-CEEEEEccch
Confidence                       233 7776666543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.09  E-value=1.8e-10  Score=107.01  Aligned_cols=72  Identities=26%  Similarity=0.363  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|||||||+|.+++.+|+.|+ +|+|||.++ +++.|+++++.++   +|+++++|+.++.+             +
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-------------p  147 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-------------P  147 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-------------S
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-------------C
Confidence            3688999999999999998888875 899999995 8899999888764   79999999998853             3


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      .++|+||+++
T Consensus       148 e~~DvivsE~  157 (376)
T 4hc4_A          148 EQVDAIVSEW  157 (376)
T ss_dssp             SCEEEEECCC
T ss_pred             ccccEEEeec
Confidence            6799999964

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.09  E-value=5e-10  Score=95.56  Aligned_cols=76  Identities=22%  Similarity=0.291  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-------CeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-------~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++....+       +++++.+|+.++++            
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------   97 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF------------   97 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS------------
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC------------
Confidence            67899999999999999999999999999999999999999987543       58999999998763            


Q ss_pred             CCCCceEEEEcCCCC
Q 023240          214 SSSGFAKVVANIPFN  228 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~  228 (285)
                      ....||+|+++..++
T Consensus        98 ~~~~~D~v~~~~~l~  112 (235)
T 3sm3_A           98 HDSSFDFAVMQAFLT  112 (235)
T ss_dssp             CTTCEEEEEEESCGG
T ss_pred             CCCceeEEEEcchhh
Confidence            357899999986654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.08  E-value=8.9e-11  Score=111.61  Aligned_cols=94  Identities=16%  Similarity=0.140  Sum_probs=76.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      +..+......+...+.+.++.+|||+|||+|..+..+|..   .++|+|+|+++.+++.+++|++..+  ++.++++|+.
T Consensus        87 ~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~  166 (456)
T 3m4x_A           87 EYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPA  166 (456)
T ss_dssp             CEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHH
T ss_pred             EEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHH
Confidence            3444444455666778888999999999999999999976   3699999999999999999998654  7999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      +++.           ...+.||+|++|+|.
T Consensus       167 ~l~~-----------~~~~~FD~Il~DaPC  185 (456)
T 3m4x_A          167 ELVP-----------HFSGFFDRIVVDAPC  185 (456)
T ss_dssp             HHHH-----------HHTTCEEEEEEECCC
T ss_pred             Hhhh-----------hccccCCEEEECCCC
Confidence            7642           124679999999995

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.08  E-value=5.1e-10  Score=108.46  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=83.1

Q ss_pred             ccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---------------CCEEEEEeCCHHHHHHHHHH
Q 023240          118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---------------~~~V~giD~~~~~v~~a~~~  182 (285)
                      ..|+ |+|++.+++.|++.+.+.++.+|+|..||+|.+.....+.               ...++|+|+++.++..|+.|
T Consensus       195 ~~Gq-fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN  273 (530)
T 3ufb_A          195 DSGE-FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN  273 (530)
T ss_dssp             SCCC-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred             cCce-ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence            4577 9999999999999999999999999999999998766542               24699999999999999988


Q ss_pred             hhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          183 FASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       183 ~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +--.  +...+..+|.+..+..+.        .....||+|++||||..
T Consensus       274 l~lhg~~~~~I~~~dtL~~~~~~~--------~~~~~fD~Il~NPPf~~  314 (530)
T 3ufb_A          274 LLLHGLEYPRIDPENSLRFPLREM--------GDKDRVDVILTNPPFGG  314 (530)
T ss_dssp             HHHHTCSCCEEECSCTTCSCGGGC--------CGGGCBSEEEECCCSSC
T ss_pred             HHhcCCccccccccccccCchhhh--------cccccceEEEecCCCCc
Confidence            6533  356788899887654321        23457999999999963

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.08  E-value=9.2e-11  Score=111.69  Aligned_cols=95  Identities=20%  Similarity=0.205  Sum_probs=76.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVK  198 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~  198 (285)
                      +..+......+...+.+.++.+|||+|||+|..+..+|+.   .++|+|+|+++.+++.+++|++..+ .+.++++|+.+
T Consensus        83 ~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~  162 (464)
T 3m6w_A           83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRA  162 (464)
T ss_dssp             EEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHH
T ss_pred             EEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            4444444555666778888999999999999999999976   3699999999999999999988653 38999999988


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ++.           .....||+|++|||+.
T Consensus       163 l~~-----------~~~~~FD~Il~D~PcS  181 (464)
T 3m6w_A          163 LAE-----------AFGTYFHRVLLDAPCS  181 (464)
T ss_dssp             HHH-----------HHCSCEEEEEEECCCC
T ss_pred             hhh-----------hccccCCEEEECCCcC
Confidence            642           1246799999999973

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.08  E-value=2.4e-10  Score=99.95  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~  200 (285)
                      ++.+|||||||+|++++.++..+  .+|+|+|+++.+++.|++|++.++   ++++..+|+.+..
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~   85 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI   85 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc
Confidence            56899999999999999999975  489999999999999999998764   6999999998764

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.07  E-value=3.7e-10  Score=97.94  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~  200 (285)
                      ++.+|||||||+|++++.++..+  .+|+|+|+++.+++.|++|++.++   +++++.+|+.+..
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~   85 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF   85 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence            57899999999999999999985  479999999999999999998764   6999999998865

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.07  E-value=6.1e-10  Score=96.99  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcC----------CCeEEEEccccc-ccchhhhhh
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI----------DQLKVLQEDFVK-CHIRSHMLS  207 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~----------~~v~~~~gD~~~-~~~~~~~~d  207 (285)
                      ++.+|||||||+|.++..++..+  .+|+|||+++.+++.|+++++.+          ++++++++|+.+ ++..     
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~-----  123 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF-----  123 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT-----
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh-----
Confidence            56799999999999999999874  58999999999999999887632          589999999987 3310     


Q ss_pred             HHhhhcCCCCceEEEEcCC
Q 023240          208 LFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P  226 (285)
                           .+.+.+|.|+.+.|
T Consensus       124 -----~~~~~~d~v~~~~p  137 (246)
T 2vdv_E          124 -----FEKGQLSKMFFCFP  137 (246)
T ss_dssp             -----SCTTCEEEEEEESC
T ss_pred             -----ccccccCEEEEECC
Confidence                 23467888887643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.07  E-value=5.5e-10  Score=94.32  Aligned_cols=78  Identities=18%  Similarity=0.207  Sum_probs=64.1

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ++..+.. ++.+|||+|||+|..+..+   +. +|+|+|+++.+++.|+++.   ++++++++|+.++++          
T Consensus        29 ~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~----------   91 (211)
T 2gs9_A           29 ALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALPF----------   91 (211)
T ss_dssp             HHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCCS----------
T ss_pred             HHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCCC----------
Confidence            3443333 6789999999999999887   66 9999999999999999987   589999999988763          


Q ss_pred             hcCCCCceEEEEcCCCCC
Q 023240          212 RKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~  229 (285)
                        ..+.||+|+++..++.
T Consensus        92 --~~~~fD~v~~~~~l~~  107 (211)
T 2gs9_A           92 --PGESFDVVLLFTTLEF  107 (211)
T ss_dssp             --CSSCEEEEEEESCTTT
T ss_pred             --CCCcEEEEEEcChhhh
Confidence              3467999999866543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.06  E-value=5.2e-10  Score=107.13  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=70.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (285)
                      .+.++..+...++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|+++++.+   ++++++.+|+.++++    
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~----  221 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL----  221 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC----
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc----
Confidence            4456666666678899999999999999999875 5999999998 999999988765   479999999988652    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                               ++.||+|++|++.
T Consensus       222 ---------~~~fD~Ivs~~~~  234 (480)
T 3b3j_A          222 ---------PEQVDIIISEPMG  234 (480)
T ss_dssp             ---------SSCEEEEECCCCH
T ss_pred             ---------CCCeEEEEEeCch
Confidence                     2579999999883

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.06  E-value=8e-10  Score=100.05  Aligned_cols=94  Identities=13%  Similarity=0.132  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~  200 (285)
                      +......+...+.+.++.+|||+|||+|..+..++..   .++|+|+|+++.+++.+++|++..+  +++++++|+.+++
T Consensus        87 Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~  166 (309)
T 2b9e_A           87 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS  166 (309)
T ss_dssp             CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC
T ss_pred             ECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcC
Confidence            3333444556677888999999999999999999985   3699999999999999999998764  8999999998875


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ...         .....||.|+.|+|+.
T Consensus       167 ~~~---------~~~~~fD~Vl~D~PcS  185 (309)
T 2b9e_A          167 PSD---------PRYHEVHYILLDPSCS  185 (309)
T ss_dssp             TTC---------GGGTTEEEEEECCCCC
T ss_pred             ccc---------cccCCCCEEEEcCCcC
Confidence            311         0114699999999973

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.06  E-value=3.7e-10  Score=108.15  Aligned_cols=95  Identities=14%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             ccCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcc
Q 023240          123 YMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQED  195 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD  195 (285)
                      +..+......+...+.+.  ++.+|||+|||+|..|..+|+.   ++.|+|+|+++.+++.+++|++..  .+++++++|
T Consensus        97 ~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D  176 (479)
T 2frx_A           97 FYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD  176 (479)
T ss_dssp             EEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred             EEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            333444444455666776  8899999999999999999986   369999999999999999998754  389999999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +.+++.           ...+.||.|++|+|+.
T Consensus       177 ~~~~~~-----------~~~~~fD~Il~D~PcS  198 (479)
T 2frx_A          177 GRVFGA-----------AVPEMFDAILLDAPCS  198 (479)
T ss_dssp             STTHHH-----------HSTTCEEEEEEECCCC
T ss_pred             HHHhhh-----------hccccCCEEEECCCcC
Confidence            988652           1346799999999974

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.06  E-value=8e-10  Score=97.93  Aligned_cols=79  Identities=19%  Similarity=0.290  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +.++.+|||||||+|..+..+++.+. +|+|+|+++.+++.|++++...+   +++++++|+.+.++           ..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~~  130 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM-----------DL  130 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC-----------CC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccccc-----------CC
Confidence            45778999999999999999888765 99999999999999999987653   68999999998764           13


Q ss_pred             CCCceEEEEcCCCC
Q 023240          215 SSGFAKVVANIPFN  228 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~  228 (285)
                      .+.||+|+++..++
T Consensus       131 ~~~fD~v~~~~~l~  144 (298)
T 1ri5_A          131 GKEFDVISSQFSFH  144 (298)
T ss_dssp             SSCEEEEEEESCGG
T ss_pred             CCCcCEEEECchhh
Confidence            56899999986654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.05  E-value=1.5e-09  Score=96.70  Aligned_cols=96  Identities=23%  Similarity=0.266  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeC-CHHHHHHHHHHh-----hcC-------CCeEEEE
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK-DQHMVGLVRERF-----ASI-------DQLKVLQ  193 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~-~~~~v~~a~~~~-----~~~-------~~v~~~~  193 (285)
                      .+++.+.......++.+|||+|||+|.+++.++..+. +|+|+|+ ++.+++.|++|+     +.+       ++++++.
T Consensus        66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~  145 (281)
T 3bzb_A           66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVP  145 (281)
T ss_dssp             HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEE
T ss_pred             HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEE
Confidence            3445555555445778999999999999999998876 9999999 899999999998     332       2577776


Q ss_pred             cccccccchhhhhhHHhhhcCCCCceEEEE-cCCCCC
Q 023240          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVA-NIPFNI  229 (285)
Q Consensus       194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~-n~P~~~  229 (285)
                      .|..+..-     ++... .....||+|++ +..|+.
T Consensus       146 ~~~~~~~~-----~~~~~-~~~~~fD~Ii~~dvl~~~  176 (281)
T 3bzb_A          146 YRWGDSPD-----SLQRC-TGLQRFQVVLLADLLSFH  176 (281)
T ss_dssp             CCTTSCTH-----HHHHH-HSCSSBSEEEEESCCSCG
T ss_pred             ecCCCccH-----HHHhh-ccCCCCCEEEEeCcccCh
Confidence            66544210     11100 03467999987 677764

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.05  E-value=4.9e-10  Score=101.20  Aligned_cols=78  Identities=15%  Similarity=0.233  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++..      .++++++.+|+.+...          
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~----------  163 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK----------  163 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----------
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh----------
Confidence            45789999999999999999987  36999999999999999998753      3689999999977421          


Q ss_pred             hcCCCCceEEEEcCCCC
Q 023240          212 RKSSSGFAKVVANIPFN  228 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~  228 (285)
                       ...+.||+|++|+|..
T Consensus       164 -~~~~~fD~Ii~d~~~~  179 (304)
T 2o07_A          164 -QNQDAFDVIITDSSDP  179 (304)
T ss_dssp             -TCSSCEEEEEEECC--
T ss_pred             -hCCCCceEEEECCCCC
Confidence             2346799999998763

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.05  E-value=7.3e-10  Score=97.04  Aligned_cols=69  Identities=25%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++..  ++  ++.+|+.++++            ..+.||+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~--~~--~~~~d~~~~~~------------~~~~fD~  117 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV--KN--VVEAKAEDLPF------------PSGAFEA  117 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC--SC--EEECCTTSCCS------------CTTCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC--CC--EEECcHHHCCC------------CCCCEEE
Confidence            67899999999999999999988999999999999999999865  22  88999988763            3467999


Q ss_pred             EEEcC
Q 023240          221 VVANI  225 (285)
Q Consensus       221 Vv~n~  225 (285)
                      |+++.
T Consensus       118 v~~~~  122 (260)
T 2avn_A          118 VLALG  122 (260)
T ss_dssp             EEECS
T ss_pred             EEEcc
Confidence            99864

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.04  E-value=2.7e-10  Score=98.42  Aligned_cols=78  Identities=9%  Similarity=0.111  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCC-HHHHHHH---HHHhhcC--CCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKD-QHMVGLV---RERFASI--DQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~-~~~v~~a---~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .++.+|||||||+|.++..+++.  +.+|+|||+| +.|++.|   +++....  ++++++++|+.+++..         
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~---------   93 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE---------   93 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG---------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh---------
Confidence            36789999999999999999954  6799999999 7777766   7666544  4899999999988531         


Q ss_pred             hcCCCCceEEEEcCCCC
Q 023240          212 RKSSSGFAKVVANIPFN  228 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~  228 (285)
                        ..+.+|.|.+|+|+.
T Consensus        94 --~~d~v~~i~~~~~~~  108 (225)
T 3p2e_A           94 --LKNIADSISILFPWG  108 (225)
T ss_dssp             --GTTCEEEEEEESCCH
T ss_pred             --ccCeEEEEEEeCCCc
Confidence              125678899998864

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.04  E-value=4.4e-10  Score=97.24  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~  198 (285)
                      ++.+|||||||+|++++.++..+  .+|+|+|+++.+++.|++|++.++   +++++.+|+.+
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~   77 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA   77 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh
Confidence            56799999999999999999975  489999999999999999998764   69999999865

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.04  E-value=6.2e-10  Score=100.42  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhh------cCCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~------~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .++.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++.      ..++++++.+|+.+....         
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---------  164 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ---------  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS---------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh---------
Confidence            46789999999999999999986  4699999999999999999873      235899999999876421         


Q ss_pred             hcCCCCceEEEEcCCCCC
Q 023240          212 RKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~  229 (285)
                       ...+.||+|++|++...
T Consensus       165 -~~~~~fDvIi~d~~~~~  181 (304)
T 3bwc_A          165 -TPDNTYDVVIIDTTDPA  181 (304)
T ss_dssp             -SCTTCEEEEEEECC---
T ss_pred             -ccCCceeEEEECCCCcc
Confidence             13578999999987543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.04  E-value=4.1e-10  Score=103.05  Aligned_cols=78  Identities=17%  Similarity=0.232  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHh
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      ...+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++..      .++++++.+|+.+....        
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~--------  189 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN--------  189 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT--------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh--------
Confidence            345789999999999999999987  46999999999999999998753      35899999999875210        


Q ss_pred             hhcCCCCceEEEEcCC
Q 023240          211 RRKSSSGFAKVVANIP  226 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P  226 (285)
                        ...+.||+|++|++
T Consensus       190 --~~~~~fDlIi~d~~  203 (334)
T 1xj5_A          190 --AAEGSYDAVIVDSS  203 (334)
T ss_dssp             --SCTTCEEEEEECCC
T ss_pred             --ccCCCccEEEECCC
Confidence              12467999999876

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.03  E-value=4e-10  Score=102.21  Aligned_cols=79  Identities=14%  Similarity=0.238  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEEcccccccchhhhhhHHh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      ..+.+|||||||+|.++..+++.  +.+|+++|+++.+++.|++++..       .++++++.+|+.+...         
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~---------  146 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE---------  146 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH---------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH---------
Confidence            35689999999999999999987  56999999999999999998753       3589999999987421         


Q ss_pred             hhcCCCCceEEEEcCCCCC
Q 023240          211 RRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~~  229 (285)
                        ...+.||+|+++++...
T Consensus       147 --~~~~~fD~Ii~d~~~~~  163 (314)
T 1uir_A          147 --RTEERYDVVIIDLTDPV  163 (314)
T ss_dssp             --HCCCCEEEEEEECCCCB
T ss_pred             --hcCCCccEEEECCCCcc
Confidence              23467999999987755

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.03  E-value=9.4e-10  Score=109.83  Aligned_cols=111  Identities=15%  Similarity=0.172  Sum_probs=81.5

Q ss_pred             HHHhCCCCCccccCCcccCCHHHHHHHHHH----hcC--CCCCEEEEEcCcccHHHHHHHHhC-----CEEEEEeCCHHH
Q 023240          107 ALNSKGRFPRKSLGQHYMLNSEINDQLAAA----AAV--QEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHM  175 (285)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~----l~~--~~~~~VLDiGcG~G~~t~~la~~~-----~~V~giD~~~~~  175 (285)
                      .+.++....++..|+ |++++.++..|+..    +..  .++.+|||.|||+|.+...++...     .+++|+|+++.+
T Consensus       282 ll~eya~k~Rkk~Gq-FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~A  360 (878)
T 3s1s_A          282 LIHDIATRGRGHEGV-VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLF  360 (878)
T ss_dssp             HHHHHHTTSCCCCBS-SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGG
T ss_pred             HHHHHHHHhCCcCce-EcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHH
Confidence            333334456667787 99999999999888    322  357799999999999999988752     479999999999


Q ss_pred             HHHH--HHHhhcC----C--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          176 VGLV--RERFASI----D--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       176 v~~a--~~~~~~~----~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      ++.|  +.++..+    +  ...+...|+.+...           .....||+||+||||..
T Consensus       361 l~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~-----------~~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          361 LELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP-----------EDFANVSVVVMNPPYVS  411 (878)
T ss_dssp             HHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG-----------GGGTTEEEEEECCBCCS
T ss_pred             HHHHHHHHHHHHhhhhcCCCcceEEecchhcccc-----------cccCCCCEEEECCCccc
Confidence            9999  6665431    1  34566666665321           23467999999999953

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.03  E-value=1.1e-09  Score=104.14  Aligned_cols=93  Identities=16%  Similarity=0.205  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~-~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~  200 (285)
                      .......+...+.+.++.+|||+|||+|..+..++..  + ++|+|+|+++.+++.++++++..+  +++++++|+.+.+
T Consensus       244 qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~  323 (450)
T 2yxl_A          244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP  323 (450)
T ss_dssp             CCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS
T ss_pred             cCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc
Confidence            3444455566778888999999999999999999985  3 799999999999999999988654  8999999998865


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      ..          ...+.||.|++|+|..
T Consensus       324 ~~----------~~~~~fD~Vl~D~Pcs  341 (450)
T 2yxl_A          324 EI----------IGEEVADKVLLDAPCT  341 (450)
T ss_dssp             SS----------SCSSCEEEEEEECCCC
T ss_pred             hh----------hccCCCCEEEEcCCCC
Confidence            20          1225799999999974

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.02  E-value=4.5e-10  Score=99.95  Aligned_cols=77  Identities=16%  Similarity=0.229  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhh
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+.+|||||||+|.++..+++. + .+|++||+|+.+++.|++++..      .++++++.+|+.+.-.           
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-----------  143 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA-----------  143 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH-----------
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-----------
Confidence            5689999999999999999987 4 6999999999999999998742      2589999999976421           


Q ss_pred             cCCCCceEEEEcCCCC
Q 023240          213 KSSSGFAKVVANIPFN  228 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~  228 (285)
                      .....||+|++|+|..
T Consensus       144 ~~~~~fD~Ii~d~~~~  159 (275)
T 1iy9_A          144 KSENQYDVIMVDSTEP  159 (275)
T ss_dssp             TCCSCEEEEEESCSSC
T ss_pred             hCCCCeeEEEECCCCC
Confidence            2346799999998763

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.02  E-value=9.7e-10  Score=94.25  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++.   ++++++.+|+.+.+.             ...||
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~~-------------~~~~D  102 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL---PDATLHQGDMRDFRL-------------GRKFS  102 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC---TTCEEEECCTTTCCC-------------SSCEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC---CCCEEEECCHHHccc-------------CCCCc
Confidence            46789999999999999999998779999999999999999886   479999999988752             46799


Q ss_pred             EEEE
Q 023240          220 KVVA  223 (285)
Q Consensus       220 ~Vv~  223 (285)
                      +|++
T Consensus       103 ~v~~  106 (239)
T 3bxo_A          103 AVVS  106 (239)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9995

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.01  E-value=9e-10  Score=103.95  Aligned_cols=97  Identities=18%  Similarity=0.238  Sum_probs=80.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~  199 (285)
                      +..+......+...+.+.++.+|||+|||+|..+..+++..  ++|+|+|+++.+++.++++++..+ +++++++|+.+.
T Consensus       228 ~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~  307 (429)
T 1sqg_A          228 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  307 (429)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             eEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhc
Confidence            44556666777778888889999999999999999999873  699999999999999999988765 789999999886


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +..          .....||.|++|+|+..
T Consensus       308 ~~~----------~~~~~fD~Vl~D~Pcsg  327 (429)
T 1sqg_A          308 SQW----------CGEQQFDRILLDAPCSA  327 (429)
T ss_dssp             HHH----------HTTCCEEEEEEECCCCC
T ss_pred             hhh----------cccCCCCEEEEeCCCCc
Confidence            410          13367999999999753

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.00  E-value=1.3e-09  Score=91.64  Aligned_cols=85  Identities=11%  Similarity=0.041  Sum_probs=63.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~  205 (285)
                      ....+...+.  ++.+|||+|||+|.++..++..  +.+|+|+|+|+.|++.+++++..++ ..++...|..+.      
T Consensus        39 fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~------  110 (200)
T 3fzg_A           39 FYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD------  110 (200)
T ss_dssp             HHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH------
T ss_pred             HHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc------
Confidence            3444555553  5789999999999999999876  6799999999999999999998764 224444665443      


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                             ..++.||+|+++--++
T Consensus       111 -------~~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A          111 -------VYKGTYDVVFLLKMLP  126 (200)
T ss_dssp             -------HTTSEEEEEEEETCHH
T ss_pred             -------CCCCCcChhhHhhHHH
Confidence                   2456799999975543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.00  E-value=1.2e-09  Score=98.39  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=69.8

Q ss_pred             HHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---------CCeEEEEccc
Q 023240          129 INDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQEDF  196 (285)
Q Consensus       129 ~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---------~~v~~~~gD~  196 (285)
                      ++..+++.+..  .++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++....         .+++++++|+
T Consensus        20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~   99 (313)
T 3bgv_A           20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS   99 (313)
T ss_dssp             HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred             HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence            33444444432  26789999999999999999876 579999999999999999987632         3789999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .+.+......      ...+.||+|+++..++..
T Consensus       100 ~~~~~~~~~~------~~~~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A          100 SKELLIDKFR------DPQMCFDICSCQFVCHYS  127 (313)
T ss_dssp             TTSCSTTTCS------STTCCEEEEEEETCGGGG
T ss_pred             cccchhhhcc------cCCCCEEEEEEecchhhc
Confidence            9875211000      123589999999877553

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.00  E-value=1.1e-09  Score=94.60  Aligned_cols=75  Identities=11%  Similarity=0.100  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++.+|||||||+|.++..+++. ..+|+|+|+++.+++.|++++...  .+++++.+|+.++++            ..+.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~------------~~~~  146 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP------------EPDS  146 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC------------CSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC------------CCCC
Confidence            4789999999999999998887 459999999999999999998754  268999999988763            3457


Q ss_pred             ceEEEEcCCC
Q 023240          218 FAKVVANIPF  227 (285)
Q Consensus       218 ~D~Vv~n~P~  227 (285)
                      ||+|+++..+
T Consensus       147 fD~v~~~~~l  156 (241)
T 2ex4_A          147 YDVIWIQWVI  156 (241)
T ss_dssp             EEEEEEESCG
T ss_pred             EEEEEEcchh
Confidence            9999998554

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.99  E-value=1.2e-09  Score=97.62  Aligned_cols=45  Identities=20%  Similarity=0.368  Sum_probs=40.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      ++.+|||||||+|.++..++..  +.+|+|||+++.+++.|++++..
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence            5789999999999999999997  67999999999999999998653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.98  E-value=1.8e-09  Score=97.02  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhh
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++..      .++++++.+|+.+...           
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-----------  158 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-----------  158 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-----------
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-----------
Confidence            5689999999999999999987  46999999999999999998743      3589999999977421           


Q ss_pred             cCCCCceEEEEcCCCC
Q 023240          213 KSSSGFAKVVANIPFN  228 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~  228 (285)
                      ...+.||+|++|+|..
T Consensus       159 ~~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          159 KFKNEFDVIIIDSTDP  174 (296)
T ss_dssp             GCSSCEEEEEEEC---
T ss_pred             hCCCCceEEEEcCCCc
Confidence            2346799999998643

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.97  E-value=5.5e-09  Score=92.79  Aligned_cols=121  Identities=15%  Similarity=0.072  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhc-CCCCCEEEEEcCcc---cHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc
Q 023240          127 SEINDQLAAAAA-VQEGDIVLEIGPGT---GSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l~-~~~~~~VLDiGcG~---G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~  200 (285)
                      ......++..+. .....+|||||||+   |.++..+++.  +.+|+++|+|+.|++.|++++...++++++.+|+.+.+
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHH
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCch
Confidence            344555666655 23447999999999   9988776664  67999999999999999999876678999999998753


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCc-----HHHH---HHhccCCCceeeeE
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS-----TDVI---KQLLPMGDIFSEVV  248 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~-----~~i~---~~l~~~g~~~~~~~  248 (285)
                      ..-...++ ....+...||+|+++.-++..     ..++   .+.+++|+.+....
T Consensus       142 ~~~~~~~~-~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          142 YILNHPDV-RRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTS  196 (274)
T ss_dssp             HHHHSHHH-HHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhccchh-hccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            21000000 000223478999998654432     2333   34445666554333

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.96  E-value=1.1e-09  Score=97.73  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHh----h--------cCCCeEEEEcccccccchhhhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF----A--------SIDQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~----~--------~~~~v~~~~gD~~~~~~~~~~~  206 (285)
                      .++.+|||||||+|.++..+++. ..+|+++|+|+.+++.|++++    .        ..++++++.+|+.+...     
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~-----  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-----  148 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH-----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhc-----
Confidence            35789999999999999999887 459999999999999999987    1        12589999999876421     


Q ss_pred             hHHhhhcCCCCceEEEEcCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                            . .+.||+|++++|.
T Consensus       149 ------~-~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          149 ------N-NRGFDVIIADSTD  162 (281)
T ss_dssp             ------H-CCCEEEEEEECCC
T ss_pred             ------c-cCCeeEEEECCCC
Confidence                  2 4679999999885

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.96  E-value=1.1e-09  Score=99.32  Aligned_cols=77  Identities=17%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++..      .++++++.+|+.+...          
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~----------  176 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK----------  176 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH----------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH----------
Confidence            35689999999999999999986  47999999999999999999864      2589999999987421          


Q ss_pred             hcCCCCceEEEEcCCC
Q 023240          212 RKSSSGFAKVVANIPF  227 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~  227 (285)
                       ...+.||+|++|++.
T Consensus       177 -~~~~~fD~Ii~d~~~  191 (314)
T 2b2c_A          177 -NHKNEFDVIITDSSD  191 (314)
T ss_dssp             -HCTTCEEEEEECCC-
T ss_pred             -hcCCCceEEEEcCCC
Confidence             234679999999853

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.96  E-value=4.1e-10  Score=99.11  Aligned_cols=82  Identities=12%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-----------------------------
Q 023240          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-----------------------------  187 (285)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-----------------------------  187 (285)
                      ...++.+|||||||+|.++..++..++ +|+|+|+|+.|++.|+++++..+                             
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            344678999999999988887777765 79999999999999998765431                             


Q ss_pred             --CeE-EEEcccccc-cchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          188 --QLK-VLQEDFVKC-HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       188 --~v~-~~~gD~~~~-~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                        +++ ++.+|+.+. ++..         ...++||+|+++.-++
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~---------~~~~~fD~V~~~~~l~  167 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAP---------AVLPLADCVLTLLAME  167 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTT---------CCCCCEEEEEEESCHH
T ss_pred             HhhhheEEeccccCCCCCCc---------cccCCCCEeeehHHHH
Confidence              233 888998874 2210         1246899999986543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.95  E-value=3.2e-09  Score=89.33  Aligned_cols=80  Identities=23%  Similarity=0.348  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +.++.+|||+|||+|..+..+++.+++|+|||+++..         ..++++++++|+.+.+......+.+.. ...+.|
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~~~~~~~~~~~-~~~~~~   92 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------EIAGVRFIRCDIFKETIFDDIDRALRE-EGIEKV   92 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------CCTTCEEEECCTTSSSHHHHHHHHHHH-HTCSSE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------cCCCeEEEEccccCHHHHHHHHHHhhc-ccCCcc
Confidence            3468899999999999999999988899999999741         235899999999887643332222211 011389


Q ss_pred             eEEEEcCCCC
Q 023240          219 AKVVANIPFN  228 (285)
Q Consensus       219 D~Vv~n~P~~  228 (285)
                      |+|++|++..
T Consensus        93 D~Vlsd~~~~  102 (191)
T 3dou_A           93 DDVVSDAMAK  102 (191)
T ss_dssp             EEEEECCCCC
T ss_pred             eEEecCCCcC
Confidence            9999997653

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.95  E-value=1.5e-09  Score=98.65  Aligned_cols=76  Identities=18%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .++.+|||||||+|.++..+++.  +.+|+++|+|+.+++.|++++..      .++++++.+|+.+...          
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~----------  184 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE----------  184 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH----------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh----------
Confidence            35689999999999999999987  47999999999999999999865      3589999999977421          


Q ss_pred             hcCCCCceEEEEcCC
Q 023240          212 RKSSSGFAKVVANIP  226 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P  226 (285)
                       ...+.||+|++|++
T Consensus       185 -~~~~~fDvIi~d~~  198 (321)
T 2pt6_A          185 -NVTNTYDVIIVDSS  198 (321)
T ss_dssp             -HCCSCEEEEEEECC
T ss_pred             -hcCCCceEEEECCc
Confidence             13467999999974

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.95  E-value=1.3e-09  Score=94.89  Aligned_cols=81  Identities=10%  Similarity=0.160  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCC------------------------------
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQ------------------------------  188 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~------------------------------  188 (285)
                      .++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|++++...++                              
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            4667999999999999999988876 999999999999999998865432                              


Q ss_pred             -e-EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          189 -L-KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       189 -v-~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                       + +++.+|+.+.+....        ...+.||+|+++..++
T Consensus       135 ~v~~~~~~d~~~~~~~~~--------~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGG--------VSLPPADCLLSTLCLD  168 (265)
T ss_dssp             HEEEEEECCTTSSSTTTT--------CCCCCEEEEEEESCHH
T ss_pred             hheeEEEeeeccCCCCCc--------cccCCccEEEEhhhhh
Confidence             7 899999988643100        1226899999976554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.93  E-value=3.9e-09  Score=95.72  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=61.8

Q ss_pred             CEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      .+|||||||+|.++..+++.  +.+|++||+|+.+++.|++++...  ++++++.+|+.++...          ...++|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~----------~~~~~f  160 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES----------FTPASR  160 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT----------CCTTCE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh----------ccCCCC
Confidence            39999999999999999984  679999999999999999998643  5899999999875210          134689


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |+||++.+
T Consensus       161 DvIi~D~~  168 (317)
T 3gjy_A          161 DVIIRDVF  168 (317)
T ss_dssp             EEEEECCS
T ss_pred             CEEEECCC
Confidence            99999854

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.92  E-value=1.9e-09  Score=100.17  Aligned_cols=83  Identities=11%  Similarity=0.035  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcC---------------C--CeEEEEcccccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI---------------D--QLKVLQEDFVKCHI  201 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~---------------~--~v~~~~gD~~~~~~  201 (285)
                      ++.+|||+|||+|..++.++.. + .+|+++|+++.+++.+++|++.+               +  +++++++|+.++..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999987 3 58999999999999999999865               4  48999999987531


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~  235 (285)
                                 .....||+|+.|||+. ..++++
T Consensus       127 -----------~~~~~fD~I~lDP~~~-~~~~l~  148 (378)
T 2dul_A          127 -----------ERHRYFHFIDLDPFGS-PMEFLD  148 (378)
T ss_dssp             -----------HSTTCEEEEEECCSSC-CHHHHH
T ss_pred             -----------hccCCCCEEEeCCCCC-HHHHHH
Confidence                       1235799999888654 344443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.92  E-value=3.5e-09  Score=85.76  Aligned_cols=85  Identities=16%  Similarity=0.279  Sum_probs=62.1

Q ss_pred             HHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          132 QLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       132 ~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      .+++.+. ..++.+|||+|||+|.++..+++.   +.+++++|+++ +++.        ++++++.+|+.+.+.......
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~~   82 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhhc
Confidence            3444444 457789999999999999999887   37999999998 6532        579999999988652111101


Q ss_pred             HHhhhcCCCCceEEEEcCCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      .    ...+.||+|++|+|++.
T Consensus        83 ~----~~~~~~D~i~~~~~~~~  100 (180)
T 1ej0_A           83 R----VGDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             H----HTTCCEEEEEECCCCCC
T ss_pred             c----CCCCceeEEEECCCccc
Confidence            0    13468999999998754

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.90  E-value=7.7e-09  Score=91.77  Aligned_cols=94  Identities=15%  Similarity=0.244  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (285)
                      -+-++..+++.+.+.++..++|.+||.|..+..+++.+++|+|+|.|+.+++.|++ ++. ++++++++|+.+++.    
T Consensus         7 ~pVLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~----   80 (285)
T 1wg8_A            7 VPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKR----   80 (285)
T ss_dssp             CCTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHH----
T ss_pred             hhHHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHH----
Confidence            34567788888888889999999999999999999988899999999999999999 765 689999999998752    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                        .++. .....+|.|+.|+.++
T Consensus        81 --~L~~-~g~~~vDgIL~DLGvS  100 (285)
T 1wg8_A           81 --HLAA-LGVERVDGILADLGVS  100 (285)
T ss_dssp             --HHHH-TTCSCEEEEEEECSCC
T ss_pred             --HHHH-cCCCCcCEEEeCCccc
Confidence              1111 2235799999998876

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.89  E-value=6.6e-09  Score=86.94  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=56.7

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch--------h---
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR--------S---  203 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~--------~---  203 (285)
                      +.++.+|||+|||+|.++..+++.    +.+|+|+|+++..         ..++++++++|+.+.+..        +   
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhhhcccccccccc
Confidence            356789999999999999999986    3689999999831         135799999999876510        0   


Q ss_pred             ---hhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          204 ---HMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       204 ---~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                         ...++.+ ......||+|+++.+++.
T Consensus        91 ~~~~~~~~~~-~~~~~~fD~v~~~~~~~~  118 (201)
T 2plw_A           91 NNSVDYKLKE-ILQDKKIDIILSDAAVPC  118 (201)
T ss_dssp             -CHHHHHHHH-HHTTCCEEEEEECCCCCC
T ss_pred             chhhHHHHHh-hcCCCcccEEEeCCCcCC
Confidence               0000000 013468999999977654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.88  E-value=6.5e-09  Score=88.16  Aligned_cols=81  Identities=21%  Similarity=0.243  Sum_probs=63.7

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .+++.+. .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++.     .+++.+|+.+....         
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~---------   88 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMP---------   88 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCC---------
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCC---------
Confidence            3444444 46789999999999999999988889999999999999999774     37889998764221         


Q ss_pred             hcCCCCceEEEEcCCCC
Q 023240          212 RKSSSGFAKVVANIPFN  228 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~  228 (285)
                       ...+.||+|+++..++
T Consensus        89 -~~~~~fD~v~~~~~l~  104 (230)
T 3cc8_A           89 -YEEEQFDCVIFGDVLE  104 (230)
T ss_dssp             -SCTTCEEEEEEESCGG
T ss_pred             -CCCCccCEEEECChhh
Confidence             2346799999976543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.87  E-value=6e-09  Score=92.99  Aligned_cols=77  Identities=18%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .++.+|||||||+|..+..+++.  ..+|+++|+++.+++.|++++..      .++++++.+|+.+...          
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~----------  146 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE----------  146 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH----------
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH----------
Confidence            45789999999999999999886  46999999999999999999864      3589999999987421          


Q ss_pred             hcCCCCceEEEEcCCC
Q 023240          212 RKSSSGFAKVVANIPF  227 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~  227 (285)
                       ...+.||+|+++++.
T Consensus       147 -~~~~~fD~Ii~d~~~  161 (283)
T 2i7c_A          147 -NVTNTYDVIIVDSSD  161 (283)
T ss_dssp             -HCCSCEEEEEEECCC
T ss_pred             -hCCCCceEEEEcCCC
Confidence             125679999998653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.87  E-value=3.7e-09  Score=93.93  Aligned_cols=93  Identities=12%  Similarity=0.033  Sum_probs=63.6

Q ss_pred             HHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC-------------------
Q 023240          130 NDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-------------------  187 (285)
Q Consensus       130 ~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~-------------------  187 (285)
                      ...+.+.+..  .++.+|||||||+|.++..++.. +.+|+|+|+++.|++.|++++...+                   
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            4455555543  26789999999999955544443 6799999999999999998664311                   


Q ss_pred             -------------CeEEEEccccc-ccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          188 -------------QLKVLQEDFVK-CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       188 -------------~v~~~~gD~~~-~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                   .++++.+|+.+ .++.+..       ...++||+|+++..++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~~~fD~V~~~~~l~~  186 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGS-------PAPLPADALVSAFCLEA  186 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSC-------SSCSSEEEEEEESCHHH
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccc-------cCCCCCCEEEehhhhhh
Confidence                         14577778877 4432100       12356999999876554

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.87  E-value=2.8e-09  Score=96.11  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC--------CeEEEEcccccccchhhhhhHHhh
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~--------~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++....+        ++++.++|+..-.+..   ++. .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~---~l~-~  123 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVS---SVR-E  123 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHH---HHH-T
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhh---hhh-c
Confidence            4679999999999866655555 5799999999999999999876432        2567788773211100   000 0


Q ss_pred             hcCCCCceEEEEcCCC
Q 023240          212 RKSSSGFAKVVANIPF  227 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~  227 (285)
                      ....++||+|++...+
T Consensus       124 ~~~~~~FD~V~~~~~l  139 (302)
T 2vdw_A          124 VFYFGKFNIIDWQFAI  139 (302)
T ss_dssp             TCCSSCEEEEEEESCG
T ss_pred             cccCCCeeEEEECchH
Confidence            0234689999986443

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.86  E-value=1.2e-09  Score=96.62  Aligned_cols=71  Identities=10%  Similarity=0.020  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+.+|||||||+|.++..+++.+.+|+++|+++.+++.|++++..      .++++++.+|+.+.             . 
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-------------~-  137 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-------------I-  137 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-------------C-
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-------------H-
Confidence            567999999999999998887667999999999999999987643      35899999999875             2 


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                       ++||+|+++.+
T Consensus       138 -~~fD~Ii~d~~  148 (262)
T 2cmg_A          138 -KKYDLIFCLQE  148 (262)
T ss_dssp             -CCEEEEEESSC
T ss_pred             -hhCCEEEECCC
Confidence             56899999853

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.85  E-value=4e-09  Score=94.54  Aligned_cols=104  Identities=18%  Similarity=0.225  Sum_probs=69.6

Q ss_pred             HHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEE-Ecccccccchhhhh
Q 023240          130 NDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHML  206 (285)
Q Consensus       130 ~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~-~gD~~~~~~~~~~~  206 (285)
                      +..+++.+.+. ++.+|||||||||.++..+++.+ .+|+|||+++.|++.+.++   .+++... ..|+..++..+   
T Consensus        73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~~rv~~~~~~ni~~l~~~~---  146 (291)
T 3hp7_A           73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---DDRVRSMEQYNFRYAEPVD---  146 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---CTTEEEECSCCGGGCCGGG---
T ss_pred             HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---CcccceecccCceecchhh---
Confidence            44555555554 56799999999999999999986 4999999999999986543   2344333 34555444211   


Q ss_pred             hHHhhhcCCCCceEEEEcCCCCCcHH---HHHHhccCCCcee
Q 023240          207 SLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIFS  245 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~~~~~---i~~~l~~~g~~~~  245 (285)
                            .+...||.|+++..|.....   .+.+++.+|+.+.
T Consensus       147 ------l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv  182 (291)
T 3hp7_A          147 ------FTEGLPSFASIDVSFISLNLILPALAKILVDGGQVV  182 (291)
T ss_dssp             ------CTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEE
T ss_pred             ------CCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEE
Confidence                  12345999999988765443   3345555666553

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.85  E-value=1.8e-09  Score=101.05  Aligned_cols=90  Identities=13%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ..+..++..+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++-.......+..+++.++++      
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~------  167 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRR------  167 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHH------
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhccc------
Confidence            45566777777778889999999999999999999999999999999999999761100011122233333332      


Q ss_pred             HHhhhcCCCCceEEEEcCCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                            ..++||+|+++-.++.
T Consensus       168 ------~~~~fD~I~~~~vl~h  183 (416)
T 4e2x_A          168 ------TEGPANVIYAANTLCH  183 (416)
T ss_dssp             ------HHCCEEEEEEESCGGG
T ss_pred             ------CCCCEEEEEECChHHh
Confidence                  2478999999866543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.84  E-value=5.3e-09  Score=97.57  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHhhcCC--C--eEEEEcccccccc-hhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHI-RSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~-~~V~giD~~~~~v~~a~~~~~~~~--~--v~~~~gD~~~~~~-~~~~~d~~~~  211 (285)
                      .++.+|||++||+|.+++.++..  | .+|+++|+++.+++.+++|++.++  +  ++++++|+.++.. .         
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~---------  121 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE---------  121 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC---------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh---------
Confidence            35789999999999999999985  4 589999999999999999999775  3  9999999977521 0         


Q ss_pred             hcCCCCceEEEEcCCCCCcHHHHH
Q 023240          212 RKSSSGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~~~~i~~  235 (285)
                        ....||+|+.|| |....+++.
T Consensus       122 --~~~~fD~V~lDP-~g~~~~~l~  142 (392)
T 3axs_A          122 --WGFGFDYVDLDP-FGTPVPFIE  142 (392)
T ss_dssp             --CSSCEEEEEECC-SSCCHHHHH
T ss_pred             --hCCCCcEEEECC-CcCHHHHHH
Confidence              135799999998 554455544

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.84  E-value=1.6e-08  Score=91.46  Aligned_cols=87  Identities=10%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccccc
Q 023240          128 EINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (285)
Q Consensus       128 ~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~  200 (285)
                      .....+++.+..  .++.+|||+|||+|..+..+++.  +.+++++|++ .+++.|++++...   ++++++.+|+.+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  228 (335)
T 2r3s_A          150 NPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD  228 (335)
T ss_dssp             HHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC
T ss_pred             hhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence            344566777776  67889999999999999999987  6799999999 9999999987643   36999999998765


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +             +..||+|+++-.++
T Consensus       229 ~-------------~~~~D~v~~~~~l~  243 (335)
T 2r3s_A          229 Y-------------GNDYDLVLLPNFLH  243 (335)
T ss_dssp             C-------------CSCEEEEEEESCGG
T ss_pred             C-------------CCCCcEEEEcchhc
Confidence            3             23499999864443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.82  E-value=1.4e-08  Score=93.35  Aligned_cols=83  Identities=20%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~  205 (285)
                      ..+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...+   +++++.+|+.+ ++    
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----  245 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL----  245 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC----
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC----
Confidence            45666666777889999999999999999987  569999999 999999999987543   79999999976 22    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                              + ..||+|+++..++
T Consensus       246 --------~-~~~D~v~~~~vl~  259 (374)
T 1qzz_A          246 --------P-VTADVVLLSFVLL  259 (374)
T ss_dssp             --------S-CCEEEEEEESCGG
T ss_pred             --------C-CCCCEEEEecccc
Confidence                    1 2399999976654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.81  E-value=2.6e-08  Score=91.33  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (285)
                      .....+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|+++++..   ++++++.+|+.+.++ 
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  254 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-  254 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-
Confidence            34556777777777889999999999999999987  569999999 99999999998754   259999999988653 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                   +..|+|+++..++
T Consensus       255 -------------~~~D~v~~~~vlh  267 (359)
T 1x19_A          255 -------------PEADAVLFCRILY  267 (359)
T ss_dssp             -------------CCCSEEEEESCGG
T ss_pred             -------------CCCCEEEEechhc
Confidence                         2239998876654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.77  E-value=2e-09  Score=93.46  Aligned_cols=55  Identities=24%  Similarity=0.364  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHh
Q 023240          129 INDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF  183 (285)
Q Consensus       129 ~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~  183 (285)
                      -+..+++.+.+. ++.+|||||||+|.++..+++.++ +|+|||+++.|++.|+++.
T Consensus        24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            345566666554 467999999999999999999874 9999999999999988764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.75  E-value=3e-08  Score=84.19  Aligned_cols=102  Identities=17%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD~  196 (285)
                      ...++...+.+...+  .++++|||+||  |++|+.+|+. +++|++||.+++..+.|+++++..+     +|+++.||+
T Consensus        14 ~~v~~~~~~~L~~~l--~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda   89 (202)
T 3cvo_A           14 LTMPPAEAEALRMAY--EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDI   89 (202)
T ss_dssp             CCSCHHHHHHHHHHH--HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCC
T ss_pred             ccCCHHHHHHHHHHh--hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCc
Confidence            445566666665544  36789999998  5899999987 7899999999999999999998654     699999998


Q ss_pred             cccc-----chhhhhhHHhh-------hcCCCCceEEEEcCCCC
Q 023240          197 VKCH-----IRSHMLSLFER-------RKSSSGFAKVVANIPFN  228 (285)
Q Consensus       197 ~~~~-----~~~~~~d~~~~-------~~~~~~~D~Vv~n~P~~  228 (285)
                      .+..     ......+.+..       ....+.||+|+.+-.+.
T Consensus        90 ~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~  133 (202)
T 3cvo_A           90 GPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR  133 (202)
T ss_dssp             SSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH
T ss_pred             hhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc
Confidence            6541     10011111110       01236799999987643

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.74  E-value=2.5e-08  Score=86.75  Aligned_cols=74  Identities=14%  Similarity=0.037  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      .++.+|||||||+|-++..+. .+..++|+|+|+.+++.++.++..++ +.++.++|....++             ++.+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~-------------~~~~  169 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP-------------AEAG  169 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC-------------CCBC
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC-------------CCCc
Confidence            467899999999999999877 66799999999999999999987654 78899999988753             4578


Q ss_pred             eEEEEcCCC
Q 023240          219 AKVVANIPF  227 (285)
Q Consensus       219 D~Vv~n~P~  227 (285)
                      |+|+++.-+
T Consensus       170 DvvLllk~l  178 (253)
T 3frh_A          170 DLALIFKLL  178 (253)
T ss_dssp             SEEEEESCH
T ss_pred             chHHHHHHH
Confidence            999997544

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.74  E-value=2.6e-08  Score=90.95  Aligned_cols=85  Identities=12%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             HHHHHhcCCC-CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhh
Q 023240          132 QLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       132 ~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~  205 (285)
                      .++..+...+ +.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...+   +++++.+|+.+.+.    
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----  243 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN----  243 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG----
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc----
Confidence            4555556656 789999999999999999987  579999999 889999999887543   69999999988641    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                             .....||+|+++..++
T Consensus       244 -------~~~~~~D~v~~~~vlh  259 (352)
T 3mcz_A          244 -------FEGGAADVVMLNDCLH  259 (352)
T ss_dssp             -------GTTCCEEEEEEESCGG
T ss_pred             -------cCCCCccEEEEecccc
Confidence                   0235699999876554

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.74  E-value=1.1e-07  Score=87.64  Aligned_cols=84  Identities=26%  Similarity=0.376  Sum_probs=68.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (285)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+ ++   
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~---  265 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TI---  265 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CC---
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CC---
Confidence            455666677777889999999999999999987  569999999 99999999988654   479999999983 32   


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                               + ..||+|++.-.++
T Consensus       266 ---------p-~~~D~v~~~~vlh  279 (369)
T 3gwz_A          266 ---------P-DGADVYLIKHVLH  279 (369)
T ss_dssp             ---------C-SSCSEEEEESCGG
T ss_pred             ---------C-CCceEEEhhhhhc
Confidence                     2 2789998865543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.73  E-value=2.8e-08  Score=82.65  Aligned_cols=77  Identities=16%  Similarity=0.275  Sum_probs=55.9

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh-C----------CEEEEEeCCHHHHHHHHHHhhcCCCeEEE-Ecccccccchhhhh
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA-G----------ATVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHML  206 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~-~----------~~V~giD~~~~~v~~a~~~~~~~~~v~~~-~gD~~~~~~~~~~~  206 (285)
                      +.++.+|||+|||+|.++..+++. +          .+|+|+|+++.+         ..++++++ .+|+.+.+......
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHH
Confidence            456789999999999999999987 4          789999999832         12478999 99987654321111


Q ss_pred             hHHhhhcCCCCceEEEEcCCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +.    .....||+|+++.+++
T Consensus        91 ~~----~~~~~fD~V~~~~~~~  108 (196)
T 2nyu_A           91 EV----LPGRRADVILSDMAPN  108 (196)
T ss_dssp             HH----SGGGCEEEEEECCCCC
T ss_pred             Hh----cCCCCCcEEEeCCCCC
Confidence            11    2235799999987544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.72  E-value=4.1e-09  Score=93.87  Aligned_cols=80  Identities=16%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh---cCC-CeEEE--Ecccccccchhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SID-QLKVL--QEDFVKCHIRSH  204 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~---~~~-~v~~~--~gD~~~~~~~~~  204 (285)
                      ..+.+...+.++.+|||+|||+|.++..+++. .+|+|||+++ |+..++++..   ..+ ++.++  .+|+.+++    
T Consensus        72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----  145 (276)
T 2wa2_A           72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME----  145 (276)
T ss_dssp             HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC----
T ss_pred             HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC----
Confidence            34444434557889999999999999999988 7999999998 5433322211   112 78999  89998853    


Q ss_pred             hhhHHhhhcCCCCceEEEEcCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                                ...||+|+++..
T Consensus       146 ----------~~~fD~Vvsd~~  157 (276)
T 2wa2_A          146 ----------PFQADTVLCDIG  157 (276)
T ss_dssp             ----------CCCCSEEEECCC
T ss_pred             ----------CCCcCEEEECCC
Confidence                      367999999876

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.72  E-value=7.3e-08  Score=88.69  Aligned_cols=77  Identities=14%  Similarity=0.267  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      ..+.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...+   +++++.+|+.+...           .-
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~~  245 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDV-----------PF  245 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC-----------CC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCC-----------CC
Confidence            45689999999999999999985  679999999 999999999987553   79999999987520           01


Q ss_pred             CCCceEEEEcCCCC
Q 023240          215 SSGFAKVVANIPFN  228 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~  228 (285)
                      +..||+|++.-.++
T Consensus       246 p~~~D~v~~~~vlh  259 (363)
T 3dp7_A          246 PTGFDAVWMSQFLD  259 (363)
T ss_dssp             CCCCSEEEEESCST
T ss_pred             CCCcCEEEEechhh
Confidence            25789998875554

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.70  E-value=1.7e-08  Score=89.96  Aligned_cols=100  Identities=16%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHH----Hh--CCEE--EEEeCCHHHHHHHHHHhhcC---CCeEE--EEcccccccchhhhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLL----NA--GATV--LAIEKDQHMVGLVRERFASI---DQLKV--LQEDFVKCHIRSHML  206 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la----~~--~~~V--~giD~~~~~v~~a~~~~~~~---~~v~~--~~gD~~~~~~~~~~~  206 (285)
                      .++.+|||||||+|.++..++    ..  +..|  +|+|.|++|++.|++++...   +++++  ..+|+.+++.     
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~-----  125 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQS-----  125 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHH-----
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhh-----
Confidence            356799999999998765432    22  3444  99999999999999997643   35544  4555544320     


Q ss_pred             hHHhhhcCCCCceEEEEcCCCCCcH---HH---HHHhccCCCcee
Q 023240          207 SLFERRKSSSGFAKVVANIPFNIST---DV---IKQLLPMGDIFS  245 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~~~~---~i---~~~l~~~g~~~~  245 (285)
                      ++.. ....++||+|+++--++...   ..   +.+++.+|+.+.
T Consensus       126 ~~~~-~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  169 (292)
T 2aot_A          126 RMLE-KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKML  169 (292)
T ss_dssp             HHHT-TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEE
T ss_pred             hhcc-ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEE
Confidence            0000 01346799999986554332   22   235555555554

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.70  E-value=3.8e-08  Score=89.19  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=61.8

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhh
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+ +.          
T Consensus       165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----------  232 (332)
T 3i53_A          165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PL----------  232 (332)
T ss_dssp             SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC----------
T ss_pred             CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CC----------
Confidence            34445689999999999999999886  569999999 99999999987654   479999999973 32          


Q ss_pred             hcCCCCceEEEEcCCCC
Q 023240          212 RKSSSGFAKVVANIPFN  228 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~  228 (285)
                        + ..||+|++.-.++
T Consensus       233 --p-~~~D~v~~~~vlh  246 (332)
T 3i53_A          233 --P-AGAGGYVLSAVLH  246 (332)
T ss_dssp             --C-CSCSEEEEESCGG
T ss_pred             --C-CCCcEEEEehhhc
Confidence              2 2789998865543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.70  E-value=1.7e-08  Score=88.80  Aligned_cols=76  Identities=12%  Similarity=0.183  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++.+|||||||+|-++..++..  ..+|+++|+|+.+++.++.++..++ +.++.+.|...-+             .+.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-------------p~~  197 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-------------LDE  197 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-------------CCS
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-------------CCC
Confidence            34779999999999999988776  5699999999999999999998765 7888899987653             457


Q ss_pred             CceEEEEcCCCC
Q 023240          217 GFAKVVANIPFN  228 (285)
Q Consensus       217 ~~D~Vv~n~P~~  228 (285)
                      .+|+++++.-.+
T Consensus       198 ~~DvaL~lkti~  209 (281)
T 3lcv_B          198 PADVTLLLKTLP  209 (281)
T ss_dssp             CCSEEEETTCHH
T ss_pred             CcchHHHHHHHH
Confidence            799999986654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.69  E-value=7e-08  Score=88.31  Aligned_cols=83  Identities=19%  Similarity=0.288  Sum_probs=67.2

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (285)
                      ..+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+ ++    
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----  246 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL----  246 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC----
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC----
Confidence            45566667777889999999999999999987  468999999 99999999998754   379999999976 21    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                              + ..||+|+++..++
T Consensus       247 --------~-~~~D~v~~~~vl~  260 (360)
T 1tw3_A          247 --------P-RKADAIILSFVLL  260 (360)
T ss_dssp             --------S-SCEEEEEEESCGG
T ss_pred             --------C-CCccEEEEccccc
Confidence                    1 2499999876653

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.68  E-value=4.9e-09  Score=92.83  Aligned_cols=81  Identities=11%  Similarity=0.073  Sum_probs=59.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh---cCC-CeEEE--Ecccccccchh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SID-QLKVL--QEDFVKCHIRS  203 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~---~~~-~v~~~--~gD~~~~~~~~  203 (285)
                      +..+.+...+.++.+|||+|||+|.++..+++. .+|+|||+++ |+..++++..   ..+ ++.++  ++|+.+++   
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---  137 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP---  137 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC---
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC---
Confidence            344555544567889999999999999999988 8999999998 5333221110   112 68899  89998863   


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                                 ...||+|+++..
T Consensus       138 -----------~~~fD~V~sd~~  149 (265)
T 2oxt_A          138 -----------VERTDVIMCDVG  149 (265)
T ss_dssp             -----------CCCCSEEEECCC
T ss_pred             -----------CCCCcEEEEeCc
Confidence                       367999999876

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.67  E-value=9.8e-08  Score=86.41  Aligned_cols=84  Identities=15%  Similarity=0.352  Sum_probs=68.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (285)
                      ....+++.+...+ .+|||+|||+|..+..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+ ++  
T Consensus       156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--  230 (334)
T 2ip2_A          156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV--  230 (334)
T ss_dssp             HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC--
T ss_pred             HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC--
Confidence            4456666666666 89999999999999999987  579999999 99999999987643   479999999987 32  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                                + ..||+|+++..++
T Consensus       231 ----------~-~~~D~v~~~~vl~  244 (334)
T 2ip2_A          231 ----------P-SNGDIYLLSRIIG  244 (334)
T ss_dssp             ----------C-SSCSEEEEESCGG
T ss_pred             ----------C-CCCCEEEEchhcc
Confidence                      2 5689999876654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.66  E-value=4.7e-08  Score=83.11  Aligned_cols=66  Identities=21%  Similarity=0.277  Sum_probs=56.7

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEE
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~V  221 (285)
                      +.+|||+|||+|.++..++..    +|+|+++.+++.++++     +++++.+|+.++++            ..+.||+|
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~~------------~~~~fD~v  106 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-----GVFVLKGTAENLPL------------KDESFDFA  106 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-----TCEEEECBTTBCCS------------CTTCEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-----CCEEEEcccccCCC------------CCCCeeEE
Confidence            779999999999999988765    9999999999999987     68999999988763            34679999


Q ss_pred             EEcCCCC
Q 023240          222 VANIPFN  228 (285)
Q Consensus       222 v~n~P~~  228 (285)
                      +++..++
T Consensus       107 ~~~~~l~  113 (219)
T 1vlm_A          107 LMVTTIC  113 (219)
T ss_dssp             EEESCGG
T ss_pred             EEcchHh
Confidence            9986643

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.65  E-value=8.5e-08  Score=85.13  Aligned_cols=116  Identities=15%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhcCC-CCCEEEEEcCcc--cHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccc
Q 023240          127 SEINDQLAAAAAVQ-EGDIVLEIGPGT--GSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (285)
Q Consensus       127 ~~~~~~l~~~l~~~-~~~~VLDiGcG~--G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~  198 (285)
                      ...+.+.+..+... ...+|||||||+  +..+..+++.   +++|++||.|+.|++.|+.++...+  +++++++|+.+
T Consensus        63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~  142 (277)
T 3giw_A           63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD  142 (277)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred             HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence            34455566666532 346899999997  3334444432   6899999999999999999987543  79999999988


Q ss_pred             ccch------hhhhhHHhhhcCCCCceEEEEcCCCCCcH------HHHHHh---ccCCCceeeeEe
Q 023240          199 CHIR------SHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQL---LPMGDIFSEVVL  249 (285)
Q Consensus       199 ~~~~------~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~------~i~~~l---~~~g~~~~~~~~  249 (285)
                      ....      ...+|       ......|++|.-+++..      .++..+   +++|+.+.-..+
T Consensus       143 ~~~~l~~~~~~~~~D-------~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~  201 (277)
T 3giw_A          143 PASILDAPELRDTLD-------LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG  201 (277)
T ss_dssp             HHHHHTCHHHHTTCC-------TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             hhhhhcccccccccC-------cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence            6310      11111       12223677886655432      355444   667777654443

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.63  E-value=9e-09  Score=92.96  Aligned_cols=79  Identities=10%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeC----CHHHHHHHHHHhhcC--CCeEEEEc-ccccccchhhh
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK----DQHMVGLVRERFASI--DQLKVLQE-DFVKCHIRSHM  205 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~----~~~~v~~a~~~~~~~--~~v~~~~g-D~~~~~~~~~~  205 (285)
                      +.+...+.++.+|||+|||+|.++..+++. ++|+|||+    ++.+++.+.  .+..  ++++++.+ |+.+++     
T Consensus        74 i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~-----  145 (305)
T 2p41_A           74 FVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP-----  145 (305)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC-----
T ss_pred             HHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC-----
Confidence            333333456789999999999999999988 68999999    454332111  1111  47899999 888754     


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                               ...||+|+++.+++
T Consensus       146 ---------~~~fD~V~sd~~~~  159 (305)
T 2p41_A          146 ---------PERCDTLLCDIGES  159 (305)
T ss_dssp             ---------CCCCSEEEECCCCC
T ss_pred             ---------cCCCCEEEECCccc
Confidence                     25799999997653

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.63  E-value=5.3e-08  Score=78.00  Aligned_cols=84  Identities=13%  Similarity=0.270  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCccc-HHHHHHHH-hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240          126 NSEINDQLAAAAAVQEGDIVLEIGPGTG-SLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G-~~t~~la~-~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (285)
                      .+.+++.+.+...  ++.+|||||||.| ..+..|++ .+.+|+++|+++.+++             +++.|+.+.... 
T Consensus        22 ~e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------------~v~dDiF~P~~~-   85 (153)
T 2k4m_A           22 WNDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------------IVRDDITSPRME-   85 (153)
T ss_dssp             HHHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------------EECCCSSSCCHH-
T ss_pred             HHHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------------eEEccCCCCccc-
Confidence            3455666666553  4679999999999 59999998 7999999999987766             788998874321 


Q ss_pred             hhhhHHhhhcCCCCceEE-EEcCCCCCcHHHHH
Q 023240          204 HMLSLFERRKSSSGFAKV-VANIPFNISTDVIK  235 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~V-v~n~P~~~~~~i~~  235 (285)
                                .-..+|+| -.|||-....++++
T Consensus        86 ----------~Y~~~DLIYsirPP~El~~~i~~  108 (153)
T 2k4m_A           86 ----------IYRGAALIYSIRPPAEIHSSLMR  108 (153)
T ss_dssp             ----------HHTTEEEEEEESCCTTTHHHHHH
T ss_pred             ----------ccCCcCEEEEcCCCHHHHHHHHH
Confidence                      11478999 56899988888776

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.61  E-value=7.7e-08  Score=85.52  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCcccH----HHHHHHHh-C-----CEEEEEeCCHHHHHHHHHHhh--------------------c---C-
Q 023240          141 EGDIVLEIGPGTGS----LTNVLLNA-G-----ATVLAIEKDQHMVGLVRERFA--------------------S---I-  186 (285)
Q Consensus       141 ~~~~VLDiGcG~G~----~t~~la~~-~-----~~V~giD~~~~~v~~a~~~~~--------------------~---~-  186 (285)
                      ++.+|||+|||||.    +++.+++. +     .+|+|+|+|+.|++.|+++.-                    .   . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35689999999998    56666664 3     589999999999999998741                    0   1 


Q ss_pred             ---------CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240          187 ---------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       187 ---------~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                               .+|++.++|+.+.++           ...+.||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~-----------~~~~~fDlI~cr  220 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQY-----------NVPGPFDAIFCR  220 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSC-----------CCCCCEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCC-----------CcCCCeeEEEEC
Confidence                     268999999988543           123679999994

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.55  E-value=7.5e-08  Score=81.37  Aligned_cols=70  Identities=13%  Similarity=0.138  Sum_probs=54.4

Q ss_pred             HHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh
Q 023240          132 QLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       132 ~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      .++..+. ..++.+|||||||+|.++..+   +.+|+|+|+++.             +++++.+|+.++++         
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~-------------~~~~~~~d~~~~~~---------  111 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSI---RNPVHCFDLASL-------------DPRVTVCDMAQVPL---------  111 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS-------------STTEEESCTTSCSC---------
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC-------------CceEEEeccccCCC---------
Confidence            3444443 345689999999999999877   478999999987             57789999988763         


Q ss_pred             hhcCCCCceEEEEcCCCCC
Q 023240          211 RRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~~  229 (285)
                         ..+.||+|+++..++.
T Consensus       112 ---~~~~fD~v~~~~~l~~  127 (215)
T 2zfu_A          112 ---EDESVDVAVFCLSLMG  127 (215)
T ss_dssp             ---CTTCEEEEEEESCCCS
T ss_pred             ---CCCCEeEEEEehhccc
Confidence               3467999999877653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.54  E-value=1.2e-07  Score=88.43  Aligned_cols=87  Identities=14%  Similarity=0.128  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCc------ccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPG------TGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV  197 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG------~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~  197 (285)
                      ......++..+.. ++.+|||||||      +|..++.+++.   +++|+|||+++.|.       ...++++++++|+.
T Consensus       203 ~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GDa~  274 (419)
T 3sso_A          203 TPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGDQN  274 (419)
T ss_dssp             HHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECCTT
T ss_pred             HHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEeccc
Confidence            3455666655543 46899999999      77777777654   67999999999973       12358999999999


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      ++++.....      ...++||+|+++-..
T Consensus       275 dlpf~~~l~------~~d~sFDlVisdgsH  298 (419)
T 3sso_A          275 DAEFLDRIA------RRYGPFDIVIDDGSH  298 (419)
T ss_dssp             CHHHHHHHH------HHHCCEEEEEECSCC
T ss_pred             ccchhhhhh------cccCCccEEEECCcc
Confidence            987542111      113689999998543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.42  E-value=4.2e-07  Score=83.00  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=58.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~  205 (285)
                      ..+++.+...++.+|||||||+|..+..+++.  +.+++++|+ +.++.  +++.+.   .++++++.+|+.+ +     
T Consensus       174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~-----  244 (348)
T 3lst_A          174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-E-----  244 (348)
T ss_dssp             HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-C-----
T ss_pred             HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-C-----
Confidence            35666667777889999999999999999986  458999999 45544  322221   2479999999973 2     


Q ss_pred             hhHHhhhcCCCCceEEEEcCCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                              .+ .||+|++.-.++
T Consensus       245 --------~p-~~D~v~~~~vlh  258 (348)
T 3lst_A          245 --------VP-HADVHVLKRILH  258 (348)
T ss_dssp             --------CC-CCSEEEEESCGG
T ss_pred             --------CC-CCcEEEEehhcc
Confidence                    12 789999876654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.39  E-value=4.7e-07  Score=83.51  Aligned_cols=76  Identities=9%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             HHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          133 LAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       133 l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ++..+. ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.|+++    ++++++.+|+.+ ++        
T Consensus       194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~--------  259 (368)
T 3reo_A          194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----SGVEHLGGDMFD-GV--------  259 (368)
T ss_dssp             HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-CC--------
T ss_pred             HHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----CCCEEEecCCCC-CC--------
Confidence            444444 455689999999999999999986  568999999 8888776642    689999999987 43        


Q ss_pred             hhhcCCCCceEEEEcCCCC
Q 023240          210 ERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~  228 (285)
                          +.+  |+|++.-.++
T Consensus       260 ----p~~--D~v~~~~vlh  272 (368)
T 3reo_A          260 ----PKG--DAIFIKWICH  272 (368)
T ss_dssp             ----CCC--SEEEEESCGG
T ss_pred             ----CCC--CEEEEechhh
Confidence                222  8888876654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.36  E-value=1.1e-06  Score=80.28  Aligned_cols=70  Identities=13%  Similarity=0.307  Sum_probs=57.0

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ..++.+|||||||+|..+..+++.  +.+++++|+ +.+++.|++.    ++++++.+|+.+ ++            +  
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~------------p--  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----NNLTYVGGDMFT-SI------------P--  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----TTEEEEECCTTT-CC------------C--
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----CCcEEEeccccC-CC------------C--
Confidence            446689999999999999999987  569999999 9999887652    469999999976 32            2  


Q ss_pred             CceEEEEcCCCC
Q 023240          217 GFAKVVANIPFN  228 (285)
Q Consensus       217 ~~D~Vv~n~P~~  228 (285)
                      .||+|+++-.++
T Consensus       246 ~~D~v~~~~~lh  257 (352)
T 1fp2_A          246 NADAVLLKYILH  257 (352)
T ss_dssp             CCSEEEEESCGG
T ss_pred             CccEEEeehhhc
Confidence            389999876654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.34  E-value=9.2e-07  Score=81.45  Aligned_cols=78  Identities=10%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       131 ~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ..++..+. ..+..+|||||||+|..+..+++.  +.+++++|+ +.+++.|++    .++++++.+|+.+ ++      
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~------  257 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----FPGVTHVGGDMFK-EV------  257 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CC------
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----cCCeEEEeCCcCC-CC------
Confidence            44555555 556789999999999999999986  568999999 888877664    2689999999987 53      


Q ss_pred             HHhhhcCCCCceEEEEcCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                            +.+  |+|++.-.++
T Consensus       258 ------p~~--D~v~~~~vlh  270 (364)
T 3p9c_A          258 ------PSG--DTILMKWILH  270 (364)
T ss_dssp             ------CCC--SEEEEESCGG
T ss_pred             ------CCC--CEEEehHHhc
Confidence                  222  8888765554

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.34  E-value=9.1e-07  Score=81.49  Aligned_cols=78  Identities=5%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       131 ~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ..++..+. ..++.+|||||||+|..+..+++.  +.+++++|+ +.+++.|++    .++++++.+|+.+ ++      
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~------  265 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----LSGIEHVGGDMFA-SV------  265 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CC------
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----cCCCEEEeCCccc-CC------
Confidence            34555554 556789999999999999999987  468999999 999987764    2579999999987 42      


Q ss_pred             HHhhhcCCCCceEEEEcCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                            + . +|+|+++-.++
T Consensus       266 ------~-~-~D~v~~~~~lh  278 (372)
T 1fp1_D          266 ------P-Q-GDAMILKAVCH  278 (372)
T ss_dssp             ------C-C-EEEEEEESSGG
T ss_pred             ------C-C-CCEEEEecccc
Confidence                  2 2 89999976654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.32  E-value=1.5e-06  Score=77.85  Aligned_cols=61  Identities=28%  Similarity=0.345  Sum_probs=54.7

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      ..+.+++..++.... .+++.|||++||+|..+..++..|.+++|+|+++.+++.|++++..
T Consensus       219 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          219 PFPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CSCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            356788888888876 5788999999999999999999999999999999999999999864

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.29  E-value=1.4e-06  Score=77.87  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=48.7

Q ss_pred             cCCCCCEEEEEcC------cccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEE-EEcccccccchhhhhh
Q 023240          138 AVQEGDIVLEIGP------GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKV-LQEDFVKCHIRSHMLS  207 (285)
Q Consensus       138 ~~~~~~~VLDiGc------G~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~-~~gD~~~~~~~~~~~d  207 (285)
                      .+.++.+|||+||      |+|.  ..+++.   +++|+|+|+++.        +   +++++ +++|+.+.++      
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~~~------  120 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATVHT------  120 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGCCC------
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccCCc------
Confidence            4567889999999      5577  334443   479999999987        1   37889 9999988653      


Q ss_pred             HHhhhcCCCCceEEEEcCCC
Q 023240          208 LFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~  227 (285)
                             .+.||+|++|++.
T Consensus       121 -------~~~fD~Vvsn~~~  133 (290)
T 2xyq_A          121 -------ANKWDLIISDMYD  133 (290)
T ss_dssp             -------SSCEEEEEECCCC
T ss_pred             -------cCcccEEEEcCCc
Confidence                   2579999999653

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.23  E-value=9.7e-07  Score=80.83  Aligned_cols=70  Identities=17%  Similarity=0.330  Sum_probs=56.6

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++    .++++++.+|+.+ ++            +  
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~------------~--  250 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-SI------------P--  250 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-CC------------C--
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-CC------------C--
Confidence            345689999999999999999987  468999999 788877664    2469999999987 42            2  


Q ss_pred             CceEEEEcCCCC
Q 023240          217 GFAKVVANIPFN  228 (285)
Q Consensus       217 ~~D~Vv~n~P~~  228 (285)
                      .||+|+++..++
T Consensus       251 ~~D~v~~~~vlh  262 (358)
T 1zg3_A          251 SADAVLLKWVLH  262 (358)
T ss_dssp             CCSEEEEESCGG
T ss_pred             CceEEEEccccc
Confidence            489999986655

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.22  E-value=5.6e-06  Score=75.13  Aligned_cols=94  Identities=12%  Similarity=0.263  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (285)
                      +-+++.+++.+.+.++..++|..||.|..+..+++.   .++|+|+|+++.+++.|+ ++. .++++++++++.++.-  
T Consensus        43 pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~l~~--  118 (347)
T 3tka_A           43 TVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSALGE--  118 (347)
T ss_dssp             CTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGGHHH--
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHHHHH--
Confidence            446677888888889999999999999999999986   469999999999999995 552 3589999999988742  


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                          ++......+.+|.|+.|+.++
T Consensus       119 ----~L~~~g~~~~vDgILfDLGVS  139 (347)
T 3tka_A          119 ----YVAERDLIGKIDGILLDLGVS  139 (347)
T ss_dssp             ----HHHHTTCTTCEEEEEEECSCC
T ss_pred             ----HHHhcCCCCcccEEEECCccC
Confidence                221101123699999998775

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.20  E-value=1.5e-07  Score=83.59  Aligned_cols=81  Identities=11%  Similarity=0.009  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      .+..+||+.+|||.+++.+.+.+.+++.+|.++..++..++|++..++++++++|+...-..     +.   .+...||+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~-----l~---~~~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNA-----LL---PPPEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHH-----HC---SCTTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHH-----hc---CCCCCccE
Confidence            35578999999999999998877899999999999999999998766899999998663210     00   23346999


Q ss_pred             EEEcCCCCC
Q 023240          221 VVANIPFNI  229 (285)
Q Consensus       221 Vv~n~P~~~  229 (285)
                      |+.+|||..
T Consensus       163 VfiDPPYe~  171 (283)
T 2oo3_A          163 IFIDPSYER  171 (283)
T ss_dssp             EEECCCCCS
T ss_pred             EEECCCCCC
Confidence            999999985

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.18  E-value=9.8e-06  Score=74.22  Aligned_cols=86  Identities=14%  Similarity=0.258  Sum_probs=64.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~  206 (285)
                      ..++..+......+|+|||||+|.++..++++  +.+++..|. +.+++.|+++.+..  ++|+++.+|+.+.+.     
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-----  242 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-----  242 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-----
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-----
Confidence            34455555666789999999999999999987  568888886 88999999887643  589999999987542     


Q ss_pred             hHHhhhcCCCCceEEEEc-CCCCCcH
Q 023240          207 SLFERRKSSSGFAKVVAN-IPFNIST  231 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n-~P~~~~~  231 (285)
                               +.+|+++.. .-+.+..
T Consensus       243 ---------~~~D~~~~~~vlh~~~d  259 (353)
T 4a6d_A          243 ---------PEADLYILARVLHDWAD  259 (353)
T ss_dssp             ---------CCCSEEEEESSGGGSCH
T ss_pred             ---------CCceEEEeeeecccCCH
Confidence                     345777664 4344443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.11  E-value=3e-06  Score=78.00  Aligned_cols=94  Identities=23%  Similarity=0.304  Sum_probs=74.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcC--------CCeEEE
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--------DQLKVL  192 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~--------~~v~~~  192 (285)
                      |+......-.....+.+.+|.+|||+++|.|.=|.+++..+  ..|+++|+++..++.++++++..        .++.+.
T Consensus       130 ~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~  209 (359)
T 4fzv_A          130 YYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVT  209 (359)
T ss_dssp             EEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEE
T ss_pred             hhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEE
Confidence            33333444455667788899999999999999999998874  47999999999999999888642        378999


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      ..|+..++.           .....||.|+.++|=
T Consensus       210 ~~D~~~~~~-----------~~~~~fD~VLlDaPC  233 (359)
T 4fzv_A          210 SWDGRKWGE-----------LEGDTYDRVLVDVPC  233 (359)
T ss_dssp             CCCGGGHHH-----------HSTTCEEEEEEECCC
T ss_pred             eCchhhcch-----------hccccCCEEEECCcc
Confidence            999987652           245789999999884

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.07  E-value=6.1e-06  Score=81.09  Aligned_cols=70  Identities=20%  Similarity=0.319  Sum_probs=52.8

Q ss_pred             CCEEEEEcCcccHHHHHHHH---h-CC--EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhh
Q 023240          142 GDIVLEIGPGTGSLTNVLLN---A-GA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~---~-~~--~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      +..|||+|||+|-+....++   . +.  +|+|||.|+ +...|++..+.+   +.|++++||+.++.+           
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~L-----------  425 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVA-----------  425 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCC-----------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccC-----------
Confidence            35799999999998544333   3 22  789999997 555666666554   389999999999853           


Q ss_pred             cCCCCceEEEEcC
Q 023240          213 KSSSGFAKVVANI  225 (285)
Q Consensus       213 ~~~~~~D~Vv~n~  225 (285)
                        +.++|+||+..
T Consensus       426 --PEKVDIIVSEw  436 (637)
T 4gqb_A          426 --PEKADIIVSEL  436 (637)
T ss_dssp             --SSCEEEEECCC
T ss_pred             --CcccCEEEEEc
Confidence              46799999963

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.06  E-value=7.5e-06  Score=75.34  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=58.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +.+|.+|||+||++|..|..+++++++|+|||..+ |-.    .+...++|+++.+|+.+..+            ..+.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~----~l~~~~~V~~~~~d~~~~~~------------~~~~~  271 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQ----SLMDTGQVTWLREDGFKFRP------------TRSNI  271 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCH----HHHTTTCEEEECSCTTTCCC------------CSSCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cCh----hhccCCCeEEEeCccccccC------------CCCCc
Confidence            45789999999999999999999999999999753 222    22234799999999988753            34679


Q ss_pred             eEEEEcCCCC
Q 023240          219 AKVVANIPFN  228 (285)
Q Consensus       219 D~Vv~n~P~~  228 (285)
                      |.|+++...+
T Consensus       272 D~vvsDm~~~  281 (375)
T 4auk_A          272 SWMVCDMVEK  281 (375)
T ss_dssp             EEEEECCSSC
T ss_pred             CEEEEcCCCC
Confidence            9999986654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.04  E-value=3.3e-06  Score=68.94  Aligned_cols=68  Identities=12%  Similarity=0.132  Sum_probs=52.8

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +.+.++.+|||+|||.              +++|+++.|++.|+++...  +++++++|+.++++..         ...+
T Consensus         8 ~g~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~--~~~~~~~d~~~~~~~~---------~~~~   62 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN--EGRVSVENIKQLLQSA---------HKES   62 (176)
T ss_dssp             TTCCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT--TSEEEEEEGGGGGGGC---------CCSS
T ss_pred             cCCCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc--CcEEEEechhcCcccc---------CCCC
Confidence            4556889999999996              2399999999999998753  5999999999876410         1457


Q ss_pred             CceEEEEcCCCCC
Q 023240          217 GFAKVVANIPFNI  229 (285)
Q Consensus       217 ~~D~Vv~n~P~~~  229 (285)
                      .||+|+++..++.
T Consensus        63 ~fD~V~~~~~l~~   75 (176)
T 2ld4_A           63 SFDIILSGLVPGS   75 (176)
T ss_dssp             CEEEEEECCSTTC
T ss_pred             CEeEEEECChhhh
Confidence            8999999755443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.00  E-value=2.1e-05  Score=68.97  Aligned_cols=62  Identities=15%  Similarity=0.232  Sum_probs=54.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI  186 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~  186 (285)
                      ..+..+++.+++... .+++.|||.+||+|..+.+..+.|.+++|+|+++.+++.|+++++.+
T Consensus       196 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc
Confidence            445788888888765 57889999999999999999989999999999999999999998743

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.95  E-value=1.1e-05  Score=79.61  Aligned_cols=78  Identities=9%  Similarity=0.151  Sum_probs=55.6

Q ss_pred             CCEEEEEcCcccHHHHHH--HH--hC-----------CEEEEEeCCHHHHHHHHHHhhc-C-CCeEEEEcccccccchhh
Q 023240          142 GDIVLEIGPGTGSLTNVL--LN--AG-----------ATVLAIEKDQHMVGLVRERFAS-I-DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l--a~--~~-----------~~V~giD~~~~~v~~a~~~~~~-~-~~v~~~~gD~~~~~~~~~  204 (285)
                      +..|||+|||+|.+....  |.  .+           .+|+|||.|+.++..++..... . +.|+++.+|+.++.++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            458999999999996432  21  12           3999999999887666655442 2 479999999999864210


Q ss_pred             hhhHHhhhcCCCCceEEEEcCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      .       ....++|+||+.+.
T Consensus       490 ~-------~~~ekVDIIVSElm  504 (745)
T 3ua3_A          490 D-------RGFEQPDIIVSELL  504 (745)
T ss_dssp             H-------TTCCCCSEEEECCC
T ss_pred             c-------CCCCcccEEEEecc
Confidence            0       12467999999865

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.92  E-value=9.7e-06  Score=71.23  Aligned_cols=77  Identities=17%  Similarity=0.012  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-------C-------CEEEEEeCCH---HHHH-----------HHHHHhhc-------
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-------G-------ATVLAIEKDQ---HMVG-----------LVRERFAS-------  185 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-------~-------~~V~giD~~~---~~v~-----------~a~~~~~~-------  185 (285)
                      ++.+|||||+|+|+.++.+++.       .       .+++++|.++   +.+.           .|+..++.       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999998876542       1       4899999886   4333           55655443       


Q ss_pred             -------C--CCeEEEEcccccc-cchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          186 -------I--DQLKVLQEDFVKC-HIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       186 -------~--~~v~~~~gD~~~~-~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                             .  .+++++.||+.+. +..+.        .....||+|+.++
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~--------~~~~~~D~iflD~  181 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDD--------SLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCG--------GGTTCEEEEEECS
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhccc--------ccCCeEEEEEECC
Confidence                   1  2678999999884 21000        0113799999985

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.91  E-value=7.3e-05  Score=66.80  Aligned_cols=76  Identities=20%  Similarity=0.312  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEEcccccccchhhhhhHHh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      ..+++||=||-|.|..+..+++.  ..+|+.||+++..++.+++.+..       .++++++.+|+.++--         
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~---------  152 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN---------  152 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS---------
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh---------
Confidence            35789999999999999999986  46899999999999999987632       3589999999987632         


Q ss_pred             hhcCCCCceEEEEcCC
Q 023240          211 RRKSSSGFAKVVANIP  226 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P  226 (285)
                        .....||+||.+.+
T Consensus       153 --~~~~~yDvIi~D~~  166 (294)
T 3o4f_A          153 --QTSQTFDVIISDCT  166 (294)
T ss_dssp             --CSSCCEEEEEESCC
T ss_pred             --hccccCCEEEEeCC
Confidence              34578999999754

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.76  E-value=9.5e-05  Score=68.40  Aligned_cols=77  Identities=22%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEE
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~V  221 (285)
                      -+++|+.||.|.++..+.+.|.+ |.++|+++.+++..+.|+   ++..++++|+.++...+..    ........+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~---~~~~~~~~DI~~~~~~~~~----~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF---PRSLHVQEDVSLLNAEIIK----GFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC---TTSEEECCCGGGCCHHHHH----HHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC---CCCceEecChhhcCHHHHH----hhcccCCCeeEE
Confidence            47999999999999999988875 669999999999999886   4678899999987643211    110134679999


Q ss_pred             EEcCC
Q 023240          222 VANIP  226 (285)
Q Consensus       222 v~n~P  226 (285)
                      ++.||
T Consensus        76 ~ggpP   80 (376)
T 3g7u_A           76 IGGPP   80 (376)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            99999

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.69  E-value=0.00016  Score=65.65  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      +.+++|+.||+|.++..+...|.+ |.++|+++.+++..+.|+....     ++|+.++...           ..+.+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-----~~Di~~~~~~-----------~~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-----EGDITQVNEK-----------TIPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-----BSCGGGSCGG-----------GSCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-----cCCHHHcCHh-----------hCCCCCE
Confidence            468999999999999999988874 8889999999999999985321     6888887532           2245899


Q ss_pred             EEEcCCCCCcH
Q 023240          221 VVANIPFNIST  231 (285)
Q Consensus       221 Vv~n~P~~~~~  231 (285)
                      |++.||.+..+
T Consensus        75 l~~gpPCQ~fS   85 (327)
T 2c7p_A           75 LCAGFPCQAFS   85 (327)
T ss_dssp             EEEECCCTTTC
T ss_pred             EEECCCCCCcc
Confidence            99999975443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.67  E-value=5.1e-05  Score=69.33  Aligned_cols=74  Identities=19%  Similarity=0.289  Sum_probs=58.8

Q ss_pred             CEEEEEcCcccHHHHHHHHhC--C-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          143 DIVLEIGPGTGSLTNVLLNAG--A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~--~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .+|+|+.||+|.+++.+...|  . .|.++|+++.+++..+.|+.   +..++++|+.++...+    +     ....+|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---~~~~~~~Di~~~~~~~----~-----~~~~~D   70 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEE----F-----DRLSFD   70 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHH----H-----HHHCCS
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---ccccccCCHHHccHhH----c-----CcCCcC
Confidence            479999999999999999887  3 59999999999999999974   5568899998875321    1     112589


Q ss_pred             EEEEcCCCC
Q 023240          220 KVVANIPFN  228 (285)
Q Consensus       220 ~Vv~n~P~~  228 (285)
                      +|+++||-+
T Consensus        71 ~l~~gpPCq   79 (343)
T 1g55_A           71 MILMSPPCQ   79 (343)
T ss_dssp             EEEECCC--
T ss_pred             EEEEcCCCc
Confidence            999999943

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.54  E-value=0.00033  Score=62.21  Aligned_cols=88  Identities=17%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-------CCEEEEEeCCHH--------------------------HHHHHHHHhhcC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA-------GATVLAIEKDQH--------------------------MVGLVRERFASI  186 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-------~~~V~giD~~~~--------------------------~v~~a~~~~~~~  186 (285)
                      ..+..|||+|+..|++++.|+..       +.+|+++|..+.                          .++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34679999999999999998753       568999996421                          467788888764


Q ss_pred             ----CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC-cHHHHHHh
Q 023240          187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQL  237 (285)
Q Consensus       187 ----~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~-~~~i~~~l  237 (285)
                          ++|+++.||+.+.-..          ....++|+|+.+--... ....++.+
T Consensus       185 gl~~~~I~li~Gda~etL~~----------~~~~~~d~vfIDaD~y~~~~~~Le~~  230 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPT----------APIDTLAVLRMDGDLYESTWDTLTNL  230 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTT----------CCCCCEEEEEECCCSHHHHHHHHHHH
T ss_pred             CCCcCceEEEEeCHHHHHhh----------CCCCCEEEEEEcCCccccHHHHHHHH
Confidence                4899999999774211          22467999999875422 22444443

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.38  E-value=0.00055  Score=61.18  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCE---EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGAT---VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~---V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+-+++|+.||.|.++..+.+.|.+   |.++|+++.+++..+.|+   ++..++.+|+.++...+    +    ...+.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~---~~~~~~~~DI~~i~~~~----i----~~~~~   83 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH---QGKIMYVGDVRSVTQKH----I----QEWGP   83 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT---TTCEEEECCGGGCCHHH----H----HHTCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC---CCCceeCCChHHccHHH----h----cccCC
Confidence            3458999999999999999888764   589999999999888886   35578899999886432    1    12256


Q ss_pred             ceEEEEcCCCC
Q 023240          218 FAKVVANIPFN  228 (285)
Q Consensus       218 ~D~Vv~n~P~~  228 (285)
                      +|++++.||-+
T Consensus        84 ~Dll~ggpPCQ   94 (295)
T 2qrv_A           84 FDLVIGGSPCN   94 (295)
T ss_dssp             CSEEEECCCCG
T ss_pred             cCEEEecCCCc
Confidence            89999999854

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.34  E-value=0.00013  Score=65.94  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~  199 (285)
                      ..+.++++.+++... .+++.|||..||+|..+.+....|.+.+|+|+++..++.+++++...+ ....+.+|+.++
T Consensus       236 ~kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i  311 (323)
T 1boo_A          236 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRI  311 (323)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            345688888887663 578899999999999999988889999999999999999999987553 445555565554

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.30  E-value=0.00054  Score=63.19  Aligned_cols=77  Identities=25%  Similarity=0.348  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC----------CCeEEEEcccccccchhhhhhHH
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI----------DQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~----------~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ++++||=||-|.|..+..+.+. ..+|+.||+++..++.|++.+...          ++++++.+|+.++--.     ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~-----~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKR-----YA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHH-----HH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHh-----hh
Confidence            4689999999999999999886 568999999999999999976421          3689999999765210     00


Q ss_pred             hhhcCCCCceEEEEcC
Q 023240          210 ERRKSSSGFAKVVANI  225 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~  225 (285)
                         .....||+||.++
T Consensus       280 ---~~~~~yDvIIvDl  292 (381)
T 3c6k_A          280 ---KEGREFDYVINDL  292 (381)
T ss_dssp             ---HHTCCEEEEEEEC
T ss_pred             ---hccCceeEEEECC
Confidence               2346799999984

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.27  E-value=0.0007  Score=60.88  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             EEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv  222 (285)
                      +|+|+.||.|.++..+.+.|.+ |.++|+++.+++.-+.|+.    -.++.+|+.++...           +-+..|+++
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----~~~~~~DI~~i~~~-----------~~~~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSD-----------EFPKCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----SEEEESCGGGCCGG-----------GSCCCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCcccCChhhCCHh-----------hCCcccEEE
Confidence            6999999999999999888875 6799999999999998873    46789999988642           335689999


Q ss_pred             EcCC
Q 023240          223 ANIP  226 (285)
Q Consensus       223 ~n~P  226 (285)
                      +.||
T Consensus        67 ggpP   70 (331)
T 3ubt_Y           67 GGPP   70 (331)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            9988

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.18  E-value=0.00062  Score=61.88  Aligned_cols=73  Identities=14%  Similarity=0.253  Sum_probs=58.3

Q ss_pred             CEEEEEcCcccHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~---~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      -+++|+.||.|.++..+.+.|.   .|.++|+++.+++..+.|+.   ...++.+|+.++...+.         ....+|
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~---~~~~~~~DI~~~~~~~~---------~~~~~D   71 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP---ETNLLNRNIQQLTPQVI---------KKWNVD   71 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECCCGGGCCHHHH---------HHTTCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC---CCceeccccccCCHHHh---------ccCCCC
Confidence            3799999999999999988874   47899999999999998874   55678899988764321         113589


Q ss_pred             EEEEcCCC
Q 023240          220 KVVANIPF  227 (285)
Q Consensus       220 ~Vv~n~P~  227 (285)
                      ++++.||=
T Consensus        72 ~l~ggpPC   79 (333)
T 4h0n_A           72 TILMSPPC   79 (333)
T ss_dssp             EEEECCCC
T ss_pred             EEEecCCC
Confidence            99999883

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.16  E-value=0.00061  Score=61.80  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=58.0

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCC--E-E-EEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGA--T-V-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~--~-V-~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .-+++|+.||.|.++..+.+.|.  + | .++|+++.+++..+.|+..   . ++.+|+.++...+    +     ....
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---~-~~~~DI~~~~~~~----i-----~~~~   76 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---E-VQVKNLDSISIKQ----I-----ESLN   76 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---C-CBCCCTTTCCHHH----H-----HHTC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---C-cccCChhhcCHHH----h-----ccCC
Confidence            45899999999999999988873  4 5 6999999999999999853   2 6788998876432    1     1136


Q ss_pred             ceEEEEcCCCC
Q 023240          218 FAKVVANIPFN  228 (285)
Q Consensus       218 ~D~Vv~n~P~~  228 (285)
                      +|++++.||=+
T Consensus        77 ~Dil~ggpPCQ   87 (327)
T 3qv2_A           77 CNTWFMSPPCQ   87 (327)
T ss_dssp             CCEEEECCCCT
T ss_pred             CCEEEecCCcc
Confidence            89999999933

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.04  E-value=0.00032  Score=61.88  Aligned_cols=46  Identities=17%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHH
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHM  175 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~  175 (285)
                      +..+.+...+.++.+|||+|||.|..+..++.. + ..|+|+|+...+
T Consensus        79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~  126 (282)
T 3gcz_A           79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG  126 (282)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence            344555555667889999999999999988865 3 479999997543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.01  E-value=0.0017  Score=58.54  Aligned_cols=63  Identities=14%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCH---HHHHHHHHHhhcCC
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ---HMVGLVRERFASID  187 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~---~~v~~a~~~~~~~~  187 (285)
                      ..+..+++.++.... .+++.|||..||+|..+.+....+.+.+|+|+++   ..++.+++++...+
T Consensus       226 ~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          226 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            466888888888764 5688999999999999999998899999999999   99999999987544

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.00  E-value=0.00028  Score=62.21  Aligned_cols=86  Identities=9%  Similarity=0.037  Sum_probs=52.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~  206 (285)
                      +..+.+...+.++.+|||+|||+|..+..++.. + ..|+|+|+...+....... ...+ ++..+.+++....      
T Consensus        63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~dv~~------  135 (277)
T 3evf_A           63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTDIHR------  135 (277)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCCTTT------
T ss_pred             HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCCCeEEEeccceehh------
Confidence            334444445567789999999999999988875 3 3788888874331000000 0001 4555666553322      


Q ss_pred             hHHhhhcCCCCceEEEEcCCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                            .....+|+|+++...+
T Consensus       136 ------l~~~~~DlVlsD~apn  151 (277)
T 3evf_A          136 ------LEPVKCDTLLCDIGES  151 (277)
T ss_dssp             ------SCCCCCSEEEECCCCC
T ss_pred             ------cCCCCccEEEecCccC
Confidence                  2456799999996444

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.97  E-value=0.0025  Score=54.90  Aligned_cols=86  Identities=12%  Similarity=0.082  Sum_probs=58.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEc-ccccccchhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQE-DFVKCHIRSH  204 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~g-D~~~~~~~~~  204 (285)
                      +..+.+...+.++.+|+|+||++|..+..++.. + .+|+|+|+-..-.+.=+ .+...  +.+++..+ |+..++    
T Consensus        67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~~~----  141 (267)
T 3p8z_A           67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFYLP----  141 (267)
T ss_dssp             HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGGCC----
T ss_pred             HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceeecC----
Confidence            455666666678889999999999999988776 4 47999998643321000 00111  37899999 986653    


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                                ..++|.|+++.--.-.
T Consensus       142 ----------~~~~DtllcDIgeSs~  157 (267)
T 3p8z_A          142 ----------PEKCDTLLCDIGESSP  157 (267)
T ss_dssp             ----------CCCCSEEEECCCCCCS
T ss_pred             ----------CccccEEEEecCCCCC
Confidence                      2568999998544433

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.93  E-value=0.0013  Score=62.60  Aligned_cols=84  Identities=13%  Similarity=0.179  Sum_probs=62.2

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhh-------hhhHHhhhcC
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-------MLSLFERRKS  214 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~-------~~d~~~~~~~  214 (285)
                      -+++|+.||.|.++..+.+.|.+ |.++|+++.+++.-+.|+...++..++++|+.++...+.       ....+.  ..
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~--~~  166 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIR--QH  166 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH--HH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhh--hc
Confidence            47999999999999999888765 899999999999999988544566788899988753210       000111  12


Q ss_pred             CCCceEEEEcCCCC
Q 023240          215 SSGFAKVVANIPFN  228 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~  228 (285)
                      .+.+|++++.||=+
T Consensus       167 ~~~~Dvl~gGpPCQ  180 (482)
T 3me5_A          167 IPEHDVLLAGFPCQ  180 (482)
T ss_dssp             SCCCSEEEEECCCC
T ss_pred             CCCCCEEEecCCCc
Confidence            35689999998833

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.76  E-value=0.0021  Score=57.02  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=55.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-EEEEEeCCHHHHHH--HHHHhhcCCCeEEEEc-ccccccchhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGL--VRERFASIDQLKVLQE-DFVKCHIRSH  204 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~V~giD~~~~~v~~--a~~~~~~~~~v~~~~g-D~~~~~~~~~  204 (285)
                      +..+.+...+.++.+|||+||++|..+..++.. +. +|+|+|+-..-.+.  ..+.+. ...|.+..+ |+..++    
T Consensus        83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~-w~lV~~~~~~Dv~~l~----  157 (321)
T 3lkz_A           83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYG-WNIVTMKSGVDVFYRP----  157 (321)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTT-GGGEEEECSCCTTSSC----
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcC-CcceEEEeccCHhhCC----
Confidence            455666666778889999999999999987765 43 79999986432110  000000 014778887 876654    


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                                +..+|.|+++.--
T Consensus       158 ----------~~~~D~ivcDige  170 (321)
T 3lkz_A          158 ----------SECCDTLLCDIGE  170 (321)
T ss_dssp             ----------CCCCSEEEECCCC
T ss_pred             ----------CCCCCEEEEECcc
Confidence                      2558999998763

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.71  E-value=0.003  Score=58.90  Aligned_cols=58  Identities=16%  Similarity=0.243  Sum_probs=48.0

Q ss_pred             CCCCCEEEEEcCcccHHHHHHH-Hh-C--CEEEEEeCCHHHHHHHHHHhhc-----C-CCeEEEEccc
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLL-NA-G--ATVLAIEKDQHMVGLVRERFAS-----I-DQLKVLQEDF  196 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la-~~-~--~~V~giD~~~~~v~~a~~~~~~-----~-~~v~~~~gD~  196 (285)
                      +.++..++|+|++.|.++..++ +. +  ++|+++|.++...+.+++|++.     . ++++++..-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            4578899999999999999888 44 2  6999999999999999999876     2 5677766544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.72  E-value=0.0081  Score=52.33  Aligned_cols=80  Identities=16%  Similarity=0.041  Sum_probs=48.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC-CCe---EEEEc-ccccccch
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQL---KVLQE-DFVKCHIR  202 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~-~~v---~~~~g-D~~~~~~~  202 (285)
                      +..|.+..-++++.+|+|+||+.|..+..+++.  ...|.|..+.... .  ..-.... .++   ++..+ |+.++   
T Consensus        62 L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~--~~P~~~~~~Gv~~i~~~~G~Df~~~---  135 (269)
T 2px2_A           62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H--EEPMLMQSYGWNIVTMKSGVDVFYK---  135 (269)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S--CCCCCCCSTTGGGEEEECSCCGGGS---
T ss_pred             HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c--cCCCcccCCCceEEEeeccCCccCC---
Confidence            344555545567899999999999999999886  2244444433221 0  0001000 233   44447 98874   


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCC
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                                 .+..+|+|+++..
T Consensus       136 -----------~~~~~DvVLSDMA  148 (269)
T 2px2_A          136 -----------PSEISDTLLCDIG  148 (269)
T ss_dssp             -----------CCCCCSEEEECCC
T ss_pred             -----------CCCCCCEEEeCCC
Confidence                       2357899999853

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=95.53  E-value=0.027  Score=58.05  Aligned_cols=81  Identities=20%  Similarity=0.099  Sum_probs=57.3

Q ss_pred             CEEEEEcCcccHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh----hhcCCC
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE----RRKSSS  216 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~--~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~----~~~~~~  216 (285)
                      -+++|+.||.|.++..+.+.|.  .|.++|+++.+++..+.|+   ++..++.+|+.++.-.....|+.+    .....+
T Consensus       541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~---p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~  617 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN---PGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKG  617 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC---TTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTT
T ss_pred             CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC---CCCccccccHHHHhhhccchhhhhhhhhhcccCC
Confidence            4899999999999999988886  4789999999999888886   467788888755421000000000    001235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      .+|+|++.||
T Consensus       618 ~vDll~GGpP  627 (1002)
T 3swr_A          618 DVEMLCGGPP  627 (1002)
T ss_dssp             TCSEEEECCC
T ss_pred             CeeEEEEcCC
Confidence            6899999988

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=95.26  E-value=0.012  Score=52.27  Aligned_cols=44  Identities=16%  Similarity=0.137  Sum_probs=32.8

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHH
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQH  174 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~  174 (285)
                      ..+.+.--..++.+|||+||++|..+..+++. + ..|+|+|+...
T Consensus        71 ~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           71 RWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             HHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             HHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            33444422346789999999999999999975 3 47999998643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.16  E-value=0.12  Score=47.50  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~  181 (285)
                      .+....+.++++||-+|+|. |.++..+|+. |+ +|+++|.+++.++.+++
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            34566778899999999976 8888888875 87 99999999999888864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.04  E-value=0.059  Score=44.15  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             hcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       137 l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ..+.++++||..|+  |.|..+..++.. |++|+++|.+++..+.+++.    +.-.++  |..+....    +.+....
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~~~~~--d~~~~~~~----~~~~~~~  103 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVEYVG--DSRSVDFA----DEILELT  103 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCSEEE--ETTCSTHH----HHHHHHT
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCCEEe--eCCcHHHH----HHHHHHh
Confidence            45668899999994  567776666654 89999999999887776532    211121  33222111    1111112


Q ss_pred             CCCCceEEEEcCCCCCcHHHHHHhccCC
Q 023240          214 SSSGFAKVVANIPFNISTDVIKQLLPMG  241 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~~~~i~~~l~~~g  241 (285)
                      ....+|++|.+..-......++.+.++|
T Consensus       104 ~~~~~D~vi~~~g~~~~~~~~~~l~~~G  131 (198)
T 1pqw_A          104 DGYGVDVVLNSLAGEAIQRGVQILAPGG  131 (198)
T ss_dssp             TTCCEEEEEECCCTHHHHHHHHTEEEEE
T ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCC
Confidence            2346999998764222233444444443

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.01  E-value=0.091  Score=48.27  Aligned_cols=20  Identities=15%  Similarity=0.283  Sum_probs=17.4

Q ss_pred             CCEEEEEcCcccHHHHHHHH
Q 023240          142 GDIVLEIGPGTGSLTNVLLN  161 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~  161 (285)
                      +.+|+|+|||+|..|+.+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~   72 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIID   72 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHH
Confidence            46899999999999988754

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.95  E-value=0.12  Score=44.71  Aligned_cols=83  Identities=13%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++.+|=-|.+.|.   .+..+++.|++|+.+|++++.++.+.+.++.. +++..+.+|+.+..-....++.+.  ..-+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~~~G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTF--ETYS   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            57888888877665   45566777999999999999998888877655 488999999988654433333332  2346


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|-
T Consensus        84 ~iDiLVNNA   92 (254)
T 4fn4_A           84 RIDVLCNNA   92 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999873

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.67  E-value=0.062  Score=53.95  Aligned_cols=55  Identities=16%  Similarity=0.171  Sum_probs=43.5

Q ss_pred             CCEEEEEcCcccHHHHHHHHhC------C-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAG------A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~------~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~  199 (285)
                      .-+|+|+.||.|.++.-+.+.|      . -+.++|+++.+++.-+.|+   ++..+.+.|+.++
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh---p~~~~~~~di~~i  273 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH---PQTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC---TTSEEEESCHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC---CCCceecCcHHHh
Confidence            3479999999999998887654      2 5789999999999999886   4566777776543

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=94.62  E-value=0.063  Score=49.87  Aligned_cols=43  Identities=19%  Similarity=-0.038  Sum_probs=36.9

Q ss_pred             CEEEEEcCcccHHHHHHHHhCC---E----EEEEeCCHHHHHHHHHHhhc
Q 023240          143 DIVLEIGPGTGSLTNVLLNAGA---T----VLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~---~----V~giD~~~~~v~~a~~~~~~  185 (285)
                      -+|+|+.||.|.....+.+.|.   -    |.++|+++.+++.-+.|+..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            4899999999999999887762   3    78899999999998888753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.46  E-value=0.19  Score=45.56  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=39.8

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      +...+.++++||-+|+|. |.++..+|+. |+ +|+++|.+++..+.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            455677899999999986 7788888875 77 799999999999988754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.45  E-value=0.15  Score=43.61  Aligned_cols=83  Identities=13%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++++++.++.+.+.+... +++.++.+|+.+..-....++.+.+  . +
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~-g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA--H-A   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH--H-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHh--h-C
Confidence            46788888876553   44555666999999999998887777766544 4789999999886543333433332  3 7


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        83 ~id~lv~nAg   92 (252)
T 3h7a_A           83 PLEVTIFNVG   92 (252)
T ss_dssp             CEEEEEECCC
T ss_pred             CceEEEECCC
Confidence            7899998843

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.45  E-value=0.21  Score=36.63  Aligned_cols=86  Identities=15%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             CCEEEEEcCcccHHHHHHHH----hC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLN----AG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ..+|+=+|+  |.++..++.    .| .+|+++|.+++..+.+.     ..++.++.+|..+...   ..+.      -.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-----~~~~~~~~~d~~~~~~---~~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-----RMGVATKQVDAKDEAG---LAKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-----TTTCEEEECCTTCHHH---HHHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----hCCCcEEEecCCCHHH---HHHH------Hc
Confidence            457999998  665555443    47 78999999988777665     1367788888765321   1111      23


Q ss_pred             CceEEEEcCCCCCcHHHHHHhccCCCc
Q 023240          217 GFAKVVANIPFNISTDVIKQLLPMGDI  243 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~~i~~~l~~~g~~  243 (285)
                      .+|+||...|+....++.......+..
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~~~~~g~~   95 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKAAKAAGAH   95 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred             CCCEEEECCCchhhHHHHHHHHHhCCC
Confidence            579999998888777777776665543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.44  E-value=0.26  Score=42.31  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   87 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETM--KAYG   87 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            57789988876553   45556667999999999998888877776544 489999999988653333333222  2345


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        88 ~id~lv~nA   96 (264)
T 3ucx_A           88 RVDVVINNA   96 (264)
T ss_dssp             CCSEEEECC
T ss_pred             CCcEEEECC
Confidence            789999885

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.39  E-value=0.18  Score=38.75  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=48.6

Q ss_pred             CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ..+|+=+|+|  .++..++    +.|.+|+++|.+++.++.++..     .+.++.+|..+...       ++. .....
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~-------l~~-~~~~~   70 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-----GFDAVIADPTDESF-------YRS-LDLEG   70 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHH-------HHH-SCCTT
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHH-------HHh-CCccc
Confidence            3578888885  4554444    4488999999999988877653     47889999877532       111 22356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      +|.||...|
T Consensus        71 ~d~vi~~~~   79 (141)
T 3llv_A           71 VSAVLITGS   79 (141)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEecC
Confidence            799888777

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.35  E-value=0.23  Score=44.64  Aligned_cols=101  Identities=23%  Similarity=0.257  Sum_probs=62.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      ..++...+.++++||=+|+|. |.++..+|+. |+ +|+++|.+++..+.+++.    +--.++..  .+.++.    +.
T Consensus       157 ~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~--~~~~~~----~~  226 (352)
T 3fpc_A          157 HGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GATDIINY--KNGDIV----EQ  226 (352)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCCEEECG--GGSCHH----HH
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCceEEcC--CCcCHH----HH
Confidence            345667788899999999875 7777778876 77 899999999988888765    21122221  111111    11


Q ss_pred             HhhhcCCCCceEEEEcCCCC-CcHHHHHHhccCCC
Q 023240          209 FERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGD  242 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~-~~~~i~~~l~~~g~  242 (285)
                      +.+......+|+||-...-. .....++.+.++|.
T Consensus       227 v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~  261 (352)
T 3fpc_A          227 ILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSD  261 (352)
T ss_dssp             HHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEE
T ss_pred             HHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCE
Confidence            11113445699999765542 23444555544443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.31  E-value=0.21  Score=45.10  Aligned_cols=100  Identities=14%  Similarity=0.075  Sum_probs=61.7

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      +...+.++++||=+|+|. |..+..+++. |++|+++|.+++..+.+++.    +--.++..+..+  +.    +.+...
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~--~~----~~v~~~  252 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GADHGINRLEED--WV----ERVYAL  252 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCSEEEETTTSC--HH----HHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCCEEEcCCccc--HH----HHHHHH
Confidence            345677899999999875 6677777775 88999999999999888764    212233211111  11    111111


Q ss_pred             cCCCCceEEEEcCCCCCcHHHHHHhccCCCce
Q 023240          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~  244 (285)
                      .....+|+||-+..-......++.+.++|.+.
T Consensus       253 ~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv  284 (363)
T 3uog_A          253 TGDRGADHILEIAGGAGLGQSLKAVAPDGRIS  284 (363)
T ss_dssp             HTTCCEEEEEEETTSSCHHHHHHHEEEEEEEE
T ss_pred             hCCCCceEEEECCChHHHHHHHHHhhcCCEEE
Confidence            34457999998766444455556555554433

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.27  E-value=0.15  Score=45.68  Aligned_cols=51  Identities=24%  Similarity=0.184  Sum_probs=40.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      ..+....+.++++||=+|+|. |.++..+|+. |++|+++|.+++..+.+++.
T Consensus       167 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  219 (348)
T 3two_A          167 SPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM  219 (348)
T ss_dssp             HHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT
T ss_pred             HHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc
Confidence            344555777899999999875 7777777776 88999999999988888763

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.21  E-value=0.32  Score=43.76  Aligned_cols=50  Identities=30%  Similarity=0.373  Sum_probs=40.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCE-EEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GAT-VLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~-V~giD~~~~~v~~a~~~  182 (285)
                      .+....+.++++||=+|+|. |.++..+|+. |++ |+++|.+++..+.+++.
T Consensus       171 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          171 GLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            34566778899999999865 7777777776 776 99999999999999876

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.18  E-value=0.091  Score=40.77  Aligned_cols=73  Identities=23%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             CEEEEEcCcc-cHH-HHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          143 DIVLEIGPGT-GSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       143 ~~VLDiGcG~-G~~-t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      .+|+=+|+|. |.. +..|.+.|.+|+++|.+++.++.+++.     .+.++.||+.+....       +. ......|.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l-------~~-a~i~~ad~   74 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-----GVRAVLGNAANEEIM-------QL-AHLECAKW   74 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHH-------HH-TTGGGCSE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHH-------Hh-cCcccCCE
Confidence            4788888864 332 233334588999999999998887752     678899998775321       11 12245788


Q ss_pred             EEEcCCCC
Q 023240          221 VVANIPFN  228 (285)
Q Consensus       221 Vv~n~P~~  228 (285)
                      ||...|-.
T Consensus        75 vi~~~~~~   82 (140)
T 3fwz_A           75 LILTIPNG   82 (140)
T ss_dssp             EEECCSCH
T ss_pred             EEEECCCh
Confidence            88776654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.13  E-value=0.21  Score=42.71  Aligned_cols=83  Identities=13%  Similarity=0.226  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+...++.. +++.++.+|+.+..-....++.+.  ...+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQID--EKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            46788888865443   34455566999999999999988888777654 388999999987643333333222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        83 ~id~lv~nA   91 (257)
T 3imf_A           83 RIDILINNA   91 (257)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=94.11  E-value=0.29  Score=45.09  Aligned_cols=21  Identities=19%  Similarity=0.071  Sum_probs=17.7

Q ss_pred             CCEEEEEcCcccHHHHHHHHh
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA  162 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~  162 (285)
                      .-+|+|+||++|..|+.+...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~   73 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD   73 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH
Confidence            468999999999999877653

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=94.07  E-value=0.12  Score=54.87  Aligned_cols=82  Identities=20%  Similarity=0.111  Sum_probs=57.0

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh----hhcCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE----RRKSS  215 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~--~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~----~~~~~  215 (285)
                      .-+++|+.||.|.++..+.+.|.  .|.++|+++.+++..+.|+   ++..++.+|+.++.-.....|+.+    .....
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~---p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~~  927 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN---PGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQK  927 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC---TTSEEECSCHHHHHHHHTTTCSBCSSCCBCCCT
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC---CCCcEeeccHHHHhHhhhccchhhhhhhhcccc
Confidence            45799999999999999988886  4889999999999988886   456677777754421000000000    00123


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +.+|+|++.||
T Consensus       928 ~~vDvl~GGpP  938 (1330)
T 3av4_A          928 GDVEMLCGGPP  938 (1330)
T ss_dssp             TTCSEEEECCC
T ss_pred             CccceEEecCC
Confidence            46899999988

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.07  E-value=0.34  Score=40.80  Aligned_cols=84  Identities=14%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+...+... .++.++.+|+.+..-....++-+.  ...+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIK--AENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HHcC
Confidence            46788888865442   34455566999999999998888777766544 489999999987653333333322  2345


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        82 ~id~li~~Ag   91 (247)
T 3lyl_A           82 AIDILVNNAG   91 (247)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999843

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.01  E-value=0.17  Score=43.80  Aligned_cols=83  Identities=14%  Similarity=0.133  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=-|.+.|.   .+..+++.|++|+..|++++.++.+.+.+... +++..+.+|+.+..-....++.+.  ..-+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLD--AEGI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--HTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHCC
Confidence            57788888876664   45566677999999999999888877776654 488889999887653333333332  3457


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|-
T Consensus        86 ~iDiLVNNA   94 (255)
T 4g81_D           86 HVDILINNA   94 (255)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            789999984

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.00  E-value=0.23  Score=42.05  Aligned_cols=84  Identities=17%  Similarity=0.185  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... +++.++.+|+.+..-....++.+.+  ..+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA--EFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence            46789988975543   44555566999999999999888777766543 4788999999886533333332221  235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        86 ~id~li~~Ag   95 (253)
T 3qiv_A           86 GIDYLVNNAA   95 (253)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899999854

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.83  E-value=0.3  Score=41.71  Aligned_cols=84  Identities=19%  Similarity=0.308  Sum_probs=58.9

Q ss_pred             CCCEEEEEcC-c--ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGP-G--TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGc-G--~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|+ |  .|. ++..+++.|++|+.++.+++..+.+.+.+...  +++.++.+|+.+..-....++.+.+  .
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE--K   98 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH--H
Confidence            4678888886 4  444 45666777999999999998888877776543  3899999999876533333332221  2


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|.-
T Consensus        99 ~g~id~li~~Ag  110 (266)
T 3o38_A           99 AGRLDVLVNNAG  110 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCcEEEECCC
Confidence            356899998843

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.81  E-value=0.28  Score=43.06  Aligned_cols=84  Identities=13%  Similarity=0.086  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  107 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAF--RLLG  107 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HhCC
Confidence            57789999976553   44555666999999999999888877776544 488999999987653332222221  1225


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus       108 ~id~lvnnAg  117 (301)
T 3tjr_A          108 GVDVVFSNAG  117 (301)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998843

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.81  E-value=0.1  Score=46.77  Aligned_cols=97  Identities=14%  Similarity=0.142  Sum_probs=59.2

Q ss_pred             HHHhcCCCCCEEEEEcCc--ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh
Q 023240          134 AAAAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG--~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      .+...++++++||-+|+|  .|..+..+++. |++|++++.+++..+.+++.    +.-.++  |..+..+.    +.+.
T Consensus       137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga~~~~--~~~~~~~~----~~~~  206 (340)
T 3gms_A          137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GAAYVI--DTSTAPLY----ETVM  206 (340)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCSEEE--ETTTSCHH----HHHH
T ss_pred             HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CCcEEE--eCCcccHH----HHHH
Confidence            345667789999999986  67788877775 89999999999888888764    211222  22221111    1111


Q ss_pred             hhcCCCCceEEEEcCCCCCcHHHHHHhccC
Q 023240          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPM  240 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~  240 (285)
                      +......+|+||-+..-......++.+.++
T Consensus       207 ~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~  236 (340)
T 3gms_A          207 ELTNGIGADAAIDSIGGPDGNELAFSLRPN  236 (340)
T ss_dssp             HHTTTSCEEEEEESSCHHHHHHHHHTEEEE
T ss_pred             HHhCCCCCcEEEECCCChhHHHHHHHhcCC
Confidence            113345789999865533333444444333

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.76  E-value=0.28  Score=41.90  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... +++.++.+|+.+..-....++.+.  ...+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAAL--DQFG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888866543   34455666999999999998888777766544 489999999987653333332222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        89 ~id~lv~nA   97 (256)
T 3gaf_A           89 KITVLVNNA   97 (256)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.62  E-value=0.35  Score=41.94  Aligned_cols=83  Identities=11%  Similarity=0.108  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAV--ERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46789988966543   44555666999999999998888777776654 488999999987643332222221  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus       101 ~id~lv~nA  109 (279)
T 3sju_A          101 PIGILVNSA  109 (279)
T ss_dssp             SCCEEEECC
T ss_pred             CCcEEEECC
Confidence            689999884

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.59  E-value=0.38  Score=41.83  Aligned_cols=84  Identities=21%  Similarity=0.184  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+...+... +++.++.+|+.+..-....++.+.  ...+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLV--LKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            56788888876543   34455666999999999998888877776544 488999999987643333332222  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus       105 ~iD~lVnnAg  114 (283)
T 3v8b_A          105 HLDIVVANAG  114 (283)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998743

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.55  E-value=0.26  Score=42.32  Aligned_cols=84  Identities=13%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      +++++|=-|+    |.|. ++..+++.|++|+.++++++..+.+.+.++..  +++.++..|+.+..-....++.+.  .
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   82 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG--K   82 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH--H
Confidence            5788998884    5665 56677788999999999998888887777653  378899999887543333333222  2


Q ss_pred             CCCCceEEEEcCC
Q 023240          214 SSSGFAKVVANIP  226 (285)
Q Consensus       214 ~~~~~D~Vv~n~P  226 (285)
                      .-+..|++|.|..
T Consensus        83 ~~G~iD~lvnnAg   95 (256)
T 4fs3_A           83 DVGNIDGVYHSIA   95 (256)
T ss_dssp             HHCCCSEEEECCC
T ss_pred             HhCCCCEEEeccc
Confidence            3467899998844

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.52  E-value=0.34  Score=42.04  Aligned_cols=84  Identities=14%  Similarity=0.125  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccc-cchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC-HIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~-~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+...  +++.++.+|+.+. ......++.+..  .
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~--~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT--H   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH--H
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH--h
Confidence            46788888866442   34455556999999999998887777766543  3789999999885 433333333322  2


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|.-
T Consensus        89 ~g~iD~lv~nAg  100 (311)
T 3o26_A           89 FGKLDILVNNAG  100 (311)
T ss_dssp             HSSCCEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            357899999854

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.51  E-value=0.5  Score=43.50  Aligned_cols=50  Identities=24%  Similarity=0.322  Sum_probs=37.7

Q ss_pred             CEEEEEcCcccHHHHHHHHh---------CCEEEEEeCCHHHHHHHHHHhhcCCCeEEE
Q 023240          143 DIVLEIGPGTGSLTNVLLNA---------GATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~---------~~~V~giD~~~~~v~~a~~~~~~~~~v~~~  192 (285)
                      -.|+|+|+|.|.++.-+.+.         ..+++.||+|+...+.-++.+...++|++.
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~  140 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH  140 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEe
Confidence            47999999999998776542         238999999999888777776544445543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=93.42  E-value=0.28  Score=42.00  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... +++.++.+|+.+..-....++-+.  ...+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVL--AAHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHH--HhcC
Confidence            56789988865442   33444556899999999998888777766544 478899999987653332222222  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus       106 ~id~lv~~Ag  115 (262)
T 3rkr_A          106 RCDVLVNNAG  115 (262)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998854

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.42  E-value=0.38  Score=42.94  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=59.2

Q ss_pred             cCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          138 AVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       138 ~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+.++++||-+|+  |.|..+..+++. |++|++++.+++..+.+++.    +.-.++  |..+..+.    +.+.+...
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----ga~~~~--d~~~~~~~----~~~~~~~~  232 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----GADETV--NYTHPDWP----KEVRRLTG  232 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCSEEE--ETTSTTHH----HHHHHHTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCCEEE--cCCcccHH----HHHHHHhC
Confidence            5667899999998  678888888775 88999999999998888753    211222  32221111    11211123


Q ss_pred             CCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          215 SSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      ...+|+||-+..-......++.+.++|.
T Consensus       233 ~~~~d~vi~~~g~~~~~~~~~~l~~~G~  260 (343)
T 2eih_A          233 GKGADKVVDHTGALYFEGVIKATANGGR  260 (343)
T ss_dssp             TTCEEEEEESSCSSSHHHHHHHEEEEEE
T ss_pred             CCCceEEEECCCHHHHHHHHHhhccCCE
Confidence            3478999988763334455555544443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.37  E-value=0.39  Score=41.96  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++    .|. ++..+++.|++|+.++.++...+.+++..+..+++.++.+|+.+..-....++.+.  ...
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  107 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLE--KKW  107 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHH--Hhc
Confidence            57889999965    444 55666777999999999976665555544444678899999988653333333332  233


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus       108 g~iD~lVnnAG  118 (293)
T 3grk_A          108 GKLDFLVHAIG  118 (293)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899998854

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.33  E-value=0.53  Score=40.42  Aligned_cols=83  Identities=12%  Similarity=0.150  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++ |.++..+    ++.|.+|+.++.+++..+.+.+.++.. +++.++.+|+.+..-....++.+.  ...
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVK--AEI  106 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHH--HHC
Confidence            46788888854 4455444    445899999999988777766665543 478999999987543222222221  123


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|+||.|.-
T Consensus       107 g~iD~li~~Ag  117 (272)
T 1yb1_A          107 GDVSILVNNAG  117 (272)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            56899998853

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=93.30  E-value=0.36  Score=41.77  Aligned_cols=83  Identities=20%  Similarity=0.278  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++++++..+.+.+.+...+++.++.+|+.+..-....++.+.  ...+.
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  105 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALG--ELSAR  105 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHH--HHCSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence            46789988865442   34445556899999999988877766666544578888899877543222222221  22356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus       106 iD~lvnnA  113 (276)
T 2b4q_A          106 LDILVNNA  113 (276)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=93.24  E-value=0.64  Score=39.98  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.. .-.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH-VFDG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-HTTS
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH-HcCC
Confidence            46788988865443   33445556899999999988777666555433 4788999999875433322222221 1115


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        99 ~id~lv~nA  107 (273)
T 1ae1_A           99 KLNILVNNA  107 (273)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            789999884

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=93.14  E-value=0.38  Score=40.94  Aligned_cols=83  Identities=14%  Similarity=0.227  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++++++..+.+.+.+...    +++.++.+|+.+..-....++-+.  .
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH--Q   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH--H
Confidence            46788888876553   44556667999999999998887776665432    478899999987653333332222  1


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+..|++|.|.
T Consensus        84 ~~g~iD~lvnnA   95 (250)
T 3nyw_A           84 KYGAVDILVNAA   95 (250)
T ss_dssp             HHCCEEEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            235789999874

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.11  E-value=0.31  Score=42.26  Aligned_cols=83  Identities=19%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++++++..+.+...+... +++.++.+|+.+..-....++.+..  . +
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~--~-g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEA--I-A  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHH--H-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHH--h-C
Confidence            57788888865443   34455666999999999988777666665443 4899999999886544433443332  2 6


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus       109 ~iD~lvnnAg  118 (275)
T 4imr_A          109 PVDILVINAS  118 (275)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998843

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.06  E-value=0.59  Score=40.49  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++. +++..+.+...+... +++.++.+|+.+..-....++.+.+  ..
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~  105 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA--EF  105 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH--HH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH--Hc
Confidence            56788988876543   44555666999999995 777777666655543 4899999999886543333333322  23


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus       106 g~iD~lvnnAg  116 (280)
T 4da9_A          106 GRIDCLVNNAG  116 (280)
T ss_dssp             SCCCEEEEECC
T ss_pred             CCCCEEEECCC
Confidence            56899998853

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.05  E-value=0.3  Score=42.34  Aligned_cols=83  Identities=20%  Similarity=0.263  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... +++.++.+|+.+..-....++.+.  ...+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~g  108 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMT--GELG  108 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            57789988876543   44555666999999999988877777666544 488999999987653333333222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus       109 ~iD~lvnnA  117 (276)
T 3r1i_A          109 GIDIAVCNA  117 (276)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.04  E-value=0.42  Score=40.92  Aligned_cols=83  Identities=18%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+...  +++.++.+|+.+..-....++.+.  ...
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   86 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAV--EEF   86 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            46788888865443   34455566899999999999888877776654  378999999987653333332222  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        87 g~id~lvnnA   96 (262)
T 3pk0_A           87 GGIDVVCANA   96 (262)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=93.04  E-value=0.3  Score=43.44  Aligned_cols=72  Identities=18%  Similarity=0.267  Sum_probs=47.4

Q ss_pred             HHHHHHHhc-----CCCCCEEEEEcC------cccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcc
Q 023240          130 NDQLAAAAA-----VQEGDIVLEIGP------GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQED  195 (285)
Q Consensus       130 ~~~l~~~l~-----~~~~~~VLDiGc------G~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD  195 (285)
                      ...+++.+.     ...+.+|||+|+      ..|..  .+.+.   |+.|+++|+.+--         ...+ .++.||
T Consensus        93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~---------sda~-~~IqGD  160 (344)
T 3r24_A           93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV---------SDAD-STLIGD  160 (344)
T ss_dssp             HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB---------CSSS-EEEESC
T ss_pred             HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc---------cCCC-eEEEcc
Confidence            345666664     235789999996      66773  22322   4699999987521         1113 459999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      ..+..             ...++|+|+++..
T Consensus       161 ~~~~~-------------~~~k~DLVISDMA  178 (344)
T 3r24_A          161 CATVH-------------TANKWDLIISDMY  178 (344)
T ss_dssp             GGGEE-------------ESSCEEEEEECCC
T ss_pred             ccccc-------------cCCCCCEEEecCC
Confidence            76643             4578999999843

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=93.03  E-value=0.48  Score=41.45  Aligned_cols=81  Identities=11%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++.+|=-|.+.|.   .+..+++.|++|+.+|++++.++.+.+.+.  +++..+.+|+.+..-.+..++.+.  ..-+.
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~G~  103 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG--GGAVGIQADSANLAELDRLYEKVK--AEAGR  103 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            57888888877664   455667779999999999998887776653  478889999987654443333332  23467


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|-
T Consensus       104 iDiLVNNA  111 (273)
T 4fgs_A          104 IDVLFVNA  111 (273)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999873

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.03  E-value=0.25  Score=43.28  Aligned_cols=84  Identities=15%  Similarity=0.127  Sum_probs=56.2

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|+    |.|. ++..+++.|++|+.++.+++..+.+++..+..+.+.++.+|+.+..-....++.+.+  ..
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~  106 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAE--EW  106 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence            4678999997    4454 556667779999999999766555555444445788899999876533333333221  23


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus       107 g~iD~lVnnAG  117 (296)
T 3k31_A          107 GSLDFVVHAVA  117 (296)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899998854

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.00  E-value=0.55  Score=40.61  Aligned_cols=83  Identities=14%  Similarity=0.162  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC----------------HHHHHHHHHHhhcC-CCeEEEEccccccc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD----------------QHMVGLVRERFASI-DQLKVLQEDFVKCH  200 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~----------------~~~v~~a~~~~~~~-~~v~~~~gD~~~~~  200 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|++                ++.++.+.+.+... +++.++..|+.+..
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            47789989976553   455566679999999987                66666666555543 48899999998765


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      -....++.+.+  ..+..|++|.|.
T Consensus        90 ~v~~~~~~~~~--~~g~id~lv~nA  112 (286)
T 3uve_A           90 ALKAAVDSGVE--QLGRLDIIVANA  112 (286)
T ss_dssp             HHHHHHHHHHH--HHSCCCEEEECC
T ss_pred             HHHHHHHHHHH--HhCCCCEEEECC
Confidence            33333332221  235689999884

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=92.96  E-value=0.35  Score=41.71  Aligned_cols=83  Identities=16%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+... +++.++.+|+.+..-....++.+.  ...+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAV--DTWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            35678888876543   44455666999999999998888877776544 478888999887643333222222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        81 ~iD~lVnnA   89 (264)
T 3tfo_A           81 RIDVLVNNA   89 (264)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=92.92  E-value=0.25  Score=43.03  Aligned_cols=84  Identities=17%  Similarity=0.273  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+... +++.++.+|+.+.......++.+.  ...+
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAV--RRFG   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888876543   44555666999999999999888877776543 478899999987653333333222  1235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|.-
T Consensus        85 ~iD~lvnnAg   94 (280)
T 3tox_A           85 GLDTAFNNAG   94 (280)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998843

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.91  E-value=0.47  Score=42.08  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++.|.   ++..+++.|.+|++++++++..+.+...+...+   ++.++..|+.+..-....++.+.  ..
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE--AR   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH--Hh
Confidence            46789989976543   344555669999999999988877776654322   78999999987643333333322  23


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|++|.|.
T Consensus        85 ~g~id~lv~nA   95 (319)
T 3ioy_A           85 FGPVSILCNNA   95 (319)
T ss_dssp             TCCEEEEEECC
T ss_pred             CCCCCEEEECC
Confidence            35789999984

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=92.90  E-value=0.65  Score=40.06  Aligned_cols=83  Identities=11%  Similarity=0.113  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++++++..+.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV--ERYG   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence            46789988865442   33444556899999999988777666555433 478899999887543222222221  2235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        99 ~iD~lv~~A  107 (277)
T 2rhc_B           99 PVDVLVNNA  107 (277)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.89  E-value=0.28  Score=42.37  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... +++.++.+|+.+..-....++.+.  ...+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  102 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLD--EQGI  102 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--HHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHCC
Confidence            57788888865443   44455566999999999998888777766544 478999999987653333333332  2345


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus       103 ~iD~lv~nA  111 (271)
T 4ibo_A          103 DVDILVNNA  111 (271)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999884

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.88  E-value=0.42  Score=42.77  Aligned_cols=98  Identities=20%  Similarity=0.281  Sum_probs=60.4

Q ss_pred             HHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ....+.++++||=+|+  |.|..+..+++. |++|++++.+++..+.+++.    +.-.++..+ .+  +    .+.+..
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~~v~~~~-~~--~----~~~v~~  221 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GADIVLPLE-EG--W----AKAVRE  221 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCSEEEESS-TT--H----HHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCcEEecCc-hh--H----HHHHHH
Confidence            4456678999999997  567788888776 88999999999888888764    222233222 11  1    111211


Q ss_pred             hcCCCCceEEEEcCCCCCcHHHHHHhccCCCc
Q 023240          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDI  243 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~  243 (285)
                      ......+|+||-+..-......+..+.++|.+
T Consensus       222 ~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~i  253 (342)
T 4eye_A          222 ATGGAGVDMVVDPIGGPAFDDAVRTLASEGRL  253 (342)
T ss_dssp             HTTTSCEEEEEESCC--CHHHHHHTEEEEEEE
T ss_pred             HhCCCCceEEEECCchhHHHHHHHhhcCCCEE
Confidence            13344699999876544445555555444433

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=92.88  E-value=0.48  Score=40.91  Aligned_cols=84  Identities=14%  Similarity=0.214  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.++..+    ++.++.+|+.+..-....++.+.  .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT--A   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH--H
Confidence            46788888865443   344556669999999999988887777766442    68889999987643333332222  1


Q ss_pred             CCCCceEEEEcCC
Q 023240          214 SSSGFAKVVANIP  226 (285)
Q Consensus       214 ~~~~~D~Vv~n~P  226 (285)
                      ..+..|++|.|.-
T Consensus        88 ~~g~id~lv~nAg  100 (281)
T 3svt_A           88 WHGRLHGVVHCAG  100 (281)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            2356899998743

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=92.86  E-value=0.56  Score=39.71  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTV--EALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888865442   34445556899999999988877766665433 378899999887543222222221  1225


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        84 ~id~lv~nA   92 (247)
T 2jah_A           84 GLDILVNNA   92 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=92.85  E-value=0.6  Score=39.83  Aligned_cols=83  Identities=10%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... .++.++.+|+.+..-....++-+.  ...+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVV--RDFG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHhC
Confidence            46788888865443   34445556899999999988877766666543 378899999887543222222221  1225


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        84 ~id~lv~nA   92 (262)
T 1zem_A           84 KIDFLFNNA   92 (262)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=92.81  E-value=0.69  Score=39.34  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC-
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS-  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~-  215 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... .++.++.+|+.+..-....++.+.+  .. 
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~   85 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN--HFH   85 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH--HTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence            46788888864432   33444556899999999988777666555433 3688899998875432222222211  22 


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        86 g~id~lv~~A   95 (260)
T 2ae2_A           86 GKLNILVNNA   95 (260)
T ss_dssp             TCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999884

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=92.80  E-value=0.5  Score=40.56  Aligned_cols=83  Identities=16%  Similarity=0.240  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+..  ..++.++.+|+.+..-....++.+.+  ..
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE--AF   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH--Hc
Confidence            46788888876543   4445566699999999999888777666543  34899999999886543333333321  23


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        97 g~id~lv~nA  106 (266)
T 4egf_A           97 GGLDVLVNNA  106 (266)
T ss_dssp             TSCSEEEEEC
T ss_pred             CCCCEEEECC
Confidence            5689999884

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.73  E-value=0.56  Score=41.02  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC------------HHHHHHHHHHhhcC-CCeEEEEcccccccchhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~------------~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~  204 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|.+            ++.++.+...++.. +++.++.+|+.+..-...
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            57789988976553   445566679999999987            66666665555443 489999999987653333


Q ss_pred             hhhHHhhhcCCCCceEEEEcC
Q 023240          205 MLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      .++.+.  ...+..|++|.|.
T Consensus       107 ~~~~~~--~~~g~iD~lv~nA  125 (299)
T 3t7c_A          107 AVDDGV--TQLGRLDIVLANA  125 (299)
T ss_dssp             HHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHH--HHhCCCCEEEECC
Confidence            333222  1235789999873

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.69  E-value=0.66  Score=40.00  Aligned_cols=83  Identities=14%  Similarity=0.096  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeC-------------CHHHHHHHHHHhhcC-CCeEEEEcccccccchh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-------------DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~-------------~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~  203 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|+             +++.++.+.+.+... .++.++..|+.+..-..
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   93 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALR   93 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence            57789988876553   44556667999999998             677777776666544 47889999998764333


Q ss_pred             hhhhHHhhhcCCCCceEEEEcC
Q 023240          204 HMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      ..++.+.  ...+..|++|.|.
T Consensus        94 ~~~~~~~--~~~g~id~lvnnA  113 (280)
T 3pgx_A           94 ELVADGM--EQFGRLDVVVANA  113 (280)
T ss_dssp             HHHHHHH--HHHCCCCEEEECC
T ss_pred             HHHHHHH--HHcCCCCEEEECC
Confidence            2222221  1235789999884

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=92.63  E-value=0.62  Score=40.08  Aligned_cols=79  Identities=10%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+.  +++.++.+|+.+..-....++.+   ...+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~---~~~~~  103 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG--NRAEFVSTNVTSEDSVLAAIEAA---NQLGR  103 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHH---TTSSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHH---HHhCC
Confidence            46788888876553   444556669999999999988877776662  47999999998865333333332   23456


Q ss_pred             ceEEEEc
Q 023240          218 FAKVVAN  224 (285)
Q Consensus       218 ~D~Vv~n  224 (285)
                      .|++|.|
T Consensus       104 id~lv~~  110 (281)
T 3ppi_A          104 LRYAVVA  110 (281)
T ss_dssp             EEEEEEC
T ss_pred             CCeEEEc
Confidence            7888877

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=92.62  E-value=0.62  Score=39.31  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++ |.++..+    ++.|++|+.++.+++..+.+.+.+... +++.++.+|+.+..-....++-+.  ...
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVH--EQE   88 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HHc
Confidence            46788888854 4454444    455899999999988776665555433 479999999987542222222221  122


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|+||.|.
T Consensus        89 ~~id~vi~~A   98 (260)
T 3awd_A           89 GRVDILVACA   98 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.61  E-value=0.53  Score=40.15  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+.  +++.++.+|+.+..-....++.+.  ...+.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   82 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAG--QTLGA   82 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HHhCC
Confidence            57789988876543   344556669999999999988877776653  478899999987653333333222  12357


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        83 id~lv~nA   90 (255)
T 4eso_A           83 IDLLHINA   90 (255)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=92.57  E-value=0.53  Score=39.53  Aligned_cols=82  Identities=15%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++||=.|++ |.++..    +++.|++|+.++.+++..+...+.+...+++.++.+|+.+..-....++-+..  ..+
T Consensus         5 ~~k~vlVtGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEK--AFG   81 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCcEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHH--HhC
Confidence            46678877754 454444    44558999999999887776666554335789999999875432222222211  224


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        82 ~id~li~~A   90 (251)
T 1zk4_A           82 PVSTLVNNA   90 (251)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.56  E-value=0.36  Score=42.77  Aligned_cols=95  Identities=15%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             hcCCCCCEEEEEc--CcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          137 AAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       137 l~~~~~~~VLDiG--cG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ..++++++||=+|  .|.|..+..+++. |++|++++.+++..+.+++.    +.-.++.  ..+..+.+    .+.+..
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~~~~~--~~~~~~~~----~~~~~~  205 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GAWETID--YSHEDVAK----RVLELT  205 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCSEEEE--TTTSCHHH----HHHHHT
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCCEEEe--CCCccHHH----HHHHHh
Confidence            4567889999998  3567777777775 89999999999999888754    2112222  11111111    111113


Q ss_pred             CCCCceEEEEcCCCCCcHHHHHHhccCC
Q 023240          214 SSSGFAKVVANIPFNISTDVIKQLLPMG  241 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~~~~i~~~l~~~g  241 (285)
                      ....+|+||-+..-......++.+.++|
T Consensus       206 ~~~g~Dvvid~~g~~~~~~~~~~l~~~G  233 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQDTWLTSLDSVAPRG  233 (325)
T ss_dssp             TTCCEEEEEESSCGGGHHHHHTTEEEEE
T ss_pred             CCCCceEEEECCChHHHHHHHHHhcCCC
Confidence            3456899988765433344444444443

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.53  E-value=0.49  Score=40.24  Aligned_cols=83  Identities=13%  Similarity=0.103  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++++||=.|++    .|. ++..+++.|++|+.++.+....+.+++.....+++.++.+|+.+..-....++.+.  ...
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   90 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLK--THW   90 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH--HHC
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            57899999964    333 34455666999999999866555555554445678999999988654333333332  233


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        91 g~id~lv~nA  100 (271)
T 3ek2_A           91 DSLDGLVHSI  100 (271)
T ss_dssp             SCEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=92.49  E-value=0.37  Score=42.95  Aligned_cols=50  Identities=24%  Similarity=0.295  Sum_probs=41.4

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      .+....+.++++||-+|+|. |.++..+++. |++|+++|.+++..+.+++.
T Consensus       158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc
Confidence            44555677899999999975 8888888876 88999999999999988764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.48  E-value=0.64  Score=39.96  Aligned_cols=83  Identities=17%  Similarity=0.109  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC------------HHHHHHHHHHhhcC-CCeEEEEcccccccchhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~------------~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~  204 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.+|++            .+.++.+...+... +++.++.+|+.+..-...
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            46789988876543   445556669999999987            66666666555443 489999999987643322


Q ss_pred             hhhHHhhhcCCCCceEEEEcC
Q 023240          205 MLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      .++.+.  ...+..|++|.|.
T Consensus        89 ~~~~~~--~~~g~id~lv~nA  107 (287)
T 3pxx_A           89 ELANAV--AEFGKLDVVVANA  107 (287)
T ss_dssp             HHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHH--HHcCCCCEEEECC
Confidence            222221  1235689999884

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.46  E-value=0.65  Score=39.69  Aligned_cols=83  Identities=12%  Similarity=0.089  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++++++..+.+.+.+..   ..++.++.+|+.+..-....++.+.  ..
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   89 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT--ER   89 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH--HH
Confidence            46788988865442   3444555689999999998877766555432   2478899999887543222222221  12


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|++|.|.
T Consensus        90 ~g~id~lv~nA  100 (267)
T 1iy8_A           90 FGRIDGFFNNA  100 (267)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35689999884

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=92.38  E-value=0.68  Score=39.60  Aligned_cols=84  Identities=17%  Similarity=0.174  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-CC--CeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-ID--QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+.. .+  ++.++.+|+.+..-....++.+.  ..
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE--RT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH--HH
Confidence            46788888876553   4455566699999999999888877766654 22  58899999987653333333222  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|.-
T Consensus        85 ~g~id~lvnnAg   96 (265)
T 3lf2_A           85 LGCASILVNNAG   96 (265)
T ss_dssp             HCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            356899998843

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=92.38  E-value=0.72  Score=39.35  Aligned_cols=82  Identities=13%  Similarity=0.185  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++ |.++..    +++.|++|+.++.++...+.....+...+++.++.+|+.+..-....++.+.  ...+
T Consensus        15 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGA-GGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTI--AKHG   91 (278)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             cCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46789988864 554444    4455899999999987766655555433478999999987543222222221  1224


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        92 ~id~li~~A  100 (278)
T 2bgk_A           92 KLDIMFGNV  100 (278)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.32  E-value=0.41  Score=41.33  Aligned_cols=83  Identities=12%  Similarity=0.104  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+...+... .++.++.+|+.+..-....++.+.  ...+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTL--KEFG  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHH--HHcC
Confidence            46788888865443   34455666999999999998887776665543 378899999887643333232222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus       105 ~iD~lvnnA  113 (270)
T 3ftp_A          105 ALNVLVNNA  113 (270)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.31  E-value=0.56  Score=40.30  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC------------HHHHHHHHHHhhc-CCCeEEEEcccccccchhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~------------~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~  204 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|++            ++.++.+.+.+.. .+++.++.+|+.+..-...
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            46789988865443   445556679999999987            6666655554443 2489999999987653333


Q ss_pred             hhhHHhhhcCCCCceEEEEcC
Q 023240          205 MLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      .++.+.  ...+..|++|.|.
T Consensus        92 ~~~~~~--~~~g~id~lv~nA  110 (278)
T 3sx2_A           92 ALQAGL--DELGRLDIVVANA  110 (278)
T ss_dssp             HHHHHH--HHHCCCCEEEECC
T ss_pred             HHHHHH--HHcCCCCEEEECC
Confidence            232222  1235689999984

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.30  E-value=0.52  Score=41.82  Aligned_cols=96  Identities=20%  Similarity=0.244  Sum_probs=58.8

Q ss_pred             hcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       137 l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ..+.++++||=+|+  |.|..+..+++. |++|++++.+++..+.+++.    +.-.++..  .+..+.    +.+....
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~~~~~~--~~~~~~----~~~~~~~  213 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GAEYLINA--SKEDIL----RQVLKFT  213 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSEEEET--TTSCHH----HHHHHHT
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcEEEeC--CCchHH----HHHHHHh
Confidence            35678899999994  567777777775 88999999999988887653    22222222  111111    1111113


Q ss_pred             CCCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          214 SSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      ....+|+||-+..-......++.+.++|.
T Consensus       214 ~~~g~D~vid~~g~~~~~~~~~~l~~~G~  242 (334)
T 3qwb_A          214 NGKGVDASFDSVGKDTFEISLAALKRKGV  242 (334)
T ss_dssp             TTSCEEEEEECCGGGGHHHHHHHEEEEEE
T ss_pred             CCCCceEEEECCChHHHHHHHHHhccCCE
Confidence            34569999987665444455555554443

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.22  E-value=0.5  Score=41.76  Aligned_cols=96  Identities=10%  Similarity=0.115  Sum_probs=56.7

Q ss_pred             HhcCCCCCEEEEEc--CcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiG--cG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      ...+.++++||-.|  .|.|..+..+++. |++|++++.+++..+.+++.    +.-.++  |..+....+    .+.+.
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~~----~~~~~  204 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAWQVI--NYREEDLVE----RLKEI  204 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCSEEE--ETTTSCHHH----HHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCCEEE--ECCCccHHH----HHHHH
Confidence            34567889999999  4667777766664 88999999999888888763    211122  222221111    11111


Q ss_pred             cCCCCceEEEEcCCCCCcHHHHHHhccCC
Q 023240          213 KSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g  241 (285)
                      .....+|++|.+..-......+..+.++|
T Consensus       205 ~~~~~~D~vi~~~g~~~~~~~~~~l~~~G  233 (327)
T 1qor_A          205 TGGKKVRVVYDSVGRDTWERSLDCLQRRG  233 (327)
T ss_dssp             TTTCCEEEEEECSCGGGHHHHHHTEEEEE
T ss_pred             hCCCCceEEEECCchHHHHHHHHHhcCCC
Confidence            23346899998876333334444444443

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=92.20  E-value=0.69  Score=40.99  Aligned_cols=97  Identities=19%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             HhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      ...+.++++||-.|+  |.|..+..+++. |++|++++.+++..+.+++.    +.-.++  |..+....+    .+.+.
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~~~~--d~~~~~~~~----~i~~~  209 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCHHTI--NYSTQDFAE----VVREI  209 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCSEEE--ETTTSCHHH----HHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCCEEE--ECCCHHHHH----HHHHH
Confidence            345668899999995  678877777765 88999999999888888653    211122  322222111    11111


Q ss_pred             cCCCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      .....+|++|-+..-......++.+.++|.
T Consensus       210 ~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~  239 (333)
T 1wly_A          210 TGGKGVDVVYDSIGKDTLQKSLDCLRPRGM  239 (333)
T ss_dssp             HTTCCEEEEEECSCTTTHHHHHHTEEEEEE
T ss_pred             hCCCCCeEEEECCcHHHHHHHHHhhccCCE
Confidence            233468999988665444555555554443

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=92.16  E-value=0.76  Score=39.54  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeC-------------CHHHHHHHHHHhhcC-CCeEEEEcccccccchh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-------------DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~-------------~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~  203 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|+             +++.++.+.+.+... +++.++.+|+.+..-..
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            46789988876553   44556667999999998             666666666555433 47899999998765333


Q ss_pred             hhhhHHhhhcCCCCceEEEEcC
Q 023240          204 HMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      ..++.+.  ...+..|++|.|.
T Consensus        90 ~~~~~~~--~~~g~id~lvnnA  109 (277)
T 3tsc_A           90 KVVDDGV--AALGRLDIIVANA  109 (277)
T ss_dssp             HHHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHHH--HHcCCCCEEEECC
Confidence            3222221  1235689999884

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.10  E-value=0.59  Score=40.31  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+...+    ++.++.+|+.+..-....++.+.  .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   82 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL--K   82 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH--H
Confidence            46678888865442   344455568999999999988777666654332    68899999987643322222221  1


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+..|++|.|.
T Consensus        83 ~~g~iD~lv~nA   94 (280)
T 1xkq_A           83 QFGKIDVLVNNA   94 (280)
T ss_dssp             HHSCCCEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            225689999884

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.10  E-value=0.96  Score=38.46  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+...+.  +++.++.+|+.+..-....++.+.  ...+.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   82 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG--PAAYAVQMDVTRQDSIDAAIAATV--EHAGG   82 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHH--HHSSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CCceEEEeeCCCHHHHHHHHHHHH--HHcCC
Confidence            46789988865442   344555669999999999888777766553  478899999987643322222222  23457


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus        83 id~lv~~Ag   91 (259)
T 4e6p_A           83 LDILVNNAA   91 (259)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999843

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.09  E-value=0.55  Score=40.58  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.++...+.+++.....+++.++.+|+.+..-.....+.++   ..+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~---~~g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA---ATRR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH---HHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH---hcCC
Confidence            47789988976553   45556666999999997655444444333333478999999987653333333332   2357


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus       107 iD~lv~nA  114 (273)
T 3uf0_A          107 VDVLVNNA  114 (273)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECC
Confidence            89999884

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.08  E-value=0.079  Score=47.30  Aligned_cols=49  Identities=18%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             HHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHh
Q 023240          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF  183 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~  183 (285)
                      +...+.++++||-.|+  |.|..+..+++. |++|++++.+++..+.+.+.+
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~  194 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL  194 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc
Confidence            5567788999999998  677777777765 889999999999888884443

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=92.03  E-value=1  Score=38.17  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=52.0

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... +++.++.+|+.+..-....++.+.  ...+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR--KTLGG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            3567777754432   33445556899999999988777666555433 478899999887543222222221  22357


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        80 id~lv~nA   87 (256)
T 1geg_A           80 FDVIVNNA   87 (256)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.97  E-value=0.48  Score=42.55  Aligned_cols=49  Identities=27%  Similarity=0.359  Sum_probs=39.9

Q ss_pred             HHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      +....+.++++||-+|+|. |.++..+|+. |+ +|+++|.+++..+.+++.
T Consensus       164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  215 (356)
T 1pl8_A          164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI  215 (356)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            3556777899999999875 7777888775 77 899999999988888753

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=91.97  E-value=0.44  Score=41.75  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+...  +++.++.+|+.+..-....++.+.  ...
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  117 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVV--DAF  117 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHH--HHc
Confidence            46788888865443   44455666999999999988887777776544  378999999987643332222221  223


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus       118 g~iD~lvnnA  127 (293)
T 3rih_A          118 GALDVVCANA  127 (293)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=91.95  E-value=0.64  Score=40.28  Aligned_cols=81  Identities=20%  Similarity=0.248  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|.+++..+.+.+.+  .+++.++.+|+.+..-....++.+.  ...+.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  103 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACV--AAFGG  103 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888876553   45556667999999999998887776665  2478899999987653333222222  12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus       104 iD~lvnnA  111 (277)
T 3gvc_A          104 VDKLVANA  111 (277)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=91.93  E-value=0.65  Score=39.84  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++. +++..+...+.++.. .++.++.+|+.+..-....++.+.  ...
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~  105 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIV--QSD  105 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--Hhc
Confidence            46788888876553   44555666999999998 566666666555544 389999999987653333333222  123


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus       106 g~id~li~nAg  116 (271)
T 4iin_A          106 GGLSYLVNNAG  116 (271)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            56899998843

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=91.92  E-value=0.57  Score=39.88  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+.. .+++.++.+|+.+..-....++-+.+ ...+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDR-EQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHH-HHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHH-hcCC
Confidence            45678888855442   3344455689999999998877766555533 24788899998875432222222211 1146


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        83 ~id~lvnnA   91 (260)
T 2qq5_A           83 RLDVLVNNA   91 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            789999886

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=91.88  E-value=0.78  Score=38.56  Aligned_cols=81  Identities=12%  Similarity=0.044  Sum_probs=54.6

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+..  ++.++.+|+.+..-....++.+.  ...+..
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~--~~~g~i   78 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN--AVIGIVADLAHHEDVDVAFAAAV--EWGGLP   78 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GEEEEECCTTSHHHHHHHHHHHH--HHHCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHH--HhcCCC
Confidence            4678888865443   3455566699999999999888877766642  68899999987643333332222  123568


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |++|.|.-
T Consensus        79 d~lvnnAg   86 (235)
T 3l6e_A           79 ELVLHCAG   86 (235)
T ss_dssp             SEEEEECC
T ss_pred             cEEEECCC
Confidence            99998743

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=91.87  E-value=0.58  Score=39.66  Aligned_cols=81  Identities=16%  Similarity=0.222  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+...+  .+++.++.+|+.+..-....++.+.  ...+.
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   80 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQ--ALTGG   80 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHH--HHCCC
Confidence            46788988875543   44555666999999999998887776655  2478899999887643333333222  12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        81 id~lv~nA   88 (247)
T 3rwb_A           81 IDILVNNA   88 (247)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=91.86  E-value=0.84  Score=38.65  Aligned_cols=82  Identities=20%  Similarity=0.241  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+.  .++.++.+|+.+..-....++.+.+  ..+.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--~~g~   83 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG--DAALAVAADISKEADVDAAVEAALS--KFGK   83 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTSHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHH--hcCC
Confidence            46789989976553   455566679999999999988877776552  4789999999876533333332221  2346


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus        84 id~li~~Ag   92 (261)
T 3n74_A           84 VDILVNNAG   92 (261)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            899998843

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=91.81  E-value=0.64  Score=40.12  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCEEEEEeCCH--HHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~V~giD~~~--~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .+++||=.|.    |.|. ++..+++.|++|+.++.++  +.++...   +..+++.++.+|+.+..-....++.+.  .
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~   99 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLC---AEFNPAAVLPCDVISDQEIKDLFVELG--K   99 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHH---GGGCCSEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHH---HhcCCceEEEeecCCHHHHHHHHHHHH--H
Confidence            5788999993    3555 5666777799999999987  3333332   233578999999987653333333332  2


Q ss_pred             CCCCceEEEEcCC
Q 023240          214 SSSGFAKVVANIP  226 (285)
Q Consensus       214 ~~~~~D~Vv~n~P  226 (285)
                      ..+..|++|.|.-
T Consensus       100 ~~g~id~li~nAg  112 (280)
T 3nrc_A          100 VWDGLDAIVHSIA  112 (280)
T ss_dssp             HCSSCCEEEECCC
T ss_pred             HcCCCCEEEECCc
Confidence            3467899999854

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=91.81  E-value=0.87  Score=38.71  Aligned_cols=83  Identities=12%  Similarity=0.161  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+..  ..++.++.+|+.+..-....++.+.  ...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVR--SSF   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            46788888865442   3344455689999999998877666555432  2478899999987543222222221  122


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        84 g~id~lv~~A   93 (263)
T 3ai3_A           84 GGADILVNNA   93 (263)
T ss_dssp             SSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=91.65  E-value=0.81  Score=38.87  Aligned_cols=82  Identities=16%  Similarity=0.138  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++ |.++.    .+++.|++|+.++.+++..+.+.+.+... .++.++.+|+.+..-....++.+.  ...
T Consensus        13 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   89 (260)
T 2zat_A           13 ENKVALVTAST-DGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAV--NLH   89 (260)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            46788888854 44444    44556899999999988776665555433 378889999877542222222221  122


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        90 g~iD~lv~~A   99 (260)
T 2zat_A           90 GGVDILVSNA   99 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=91.62  E-value=0.94  Score=38.95  Aligned_cols=83  Identities=16%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC------------HHHHHHHHHHhhcC-CCeEEEEcccccccchhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~------------~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~  204 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|.+            .+.++.....+... +++.++.+|+.+..-...
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            56789988876553   445556669999999997            55555555544433 488999999987643333


Q ss_pred             hhhHHhhhcCCCCceEEEEcC
Q 023240          205 MLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      .++.+.  ...+..|++|.|.
T Consensus        89 ~~~~~~--~~~g~id~lv~nA  107 (281)
T 3s55_A           89 FVAEAE--DTLGGIDIAITNA  107 (281)
T ss_dssp             HHHHHH--HHHTCCCEEEECC
T ss_pred             HHHHHH--HhcCCCCEEEECC
Confidence            333222  1235689999874

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=91.55  E-value=0.94  Score=39.30  Aligned_cols=83  Identities=10%  Similarity=0.142  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHh
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      .+++||=.|++ |.++..+    ++.|++|+.++.+++..+.+.+.+..      ..++.++.+|+.+..-....++-+.
T Consensus        17 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            46789988854 5555544    44589999999998877766655543      2478999999987543222222221


Q ss_pred             hhcCCCCceEEEEcCC
Q 023240          211 RRKSSSGFAKVVANIP  226 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P  226 (285)
                      +  ..+..|+||.|.-
T Consensus        96 ~--~~g~id~li~~Ag  109 (303)
T 1yxm_A           96 D--TFGKINFLVNNGG  109 (303)
T ss_dssp             H--HHSCCCEEEECCC
T ss_pred             H--HcCCCCEEEECCC
Confidence            1  2246899998743

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=91.50  E-value=0.79  Score=40.46  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC------------HHHHHHHHHHhhcC-CCeEEEEcccccccchhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~------------~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~  204 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|.+            ++.++.+.+.+... +++.++.+|+.+..-...
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            56788888876553   445566679999999986            56666555554433 488999999987643332


Q ss_pred             hhhHHhhhcCCCCceEEEEcC
Q 023240          205 MLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      .++.+.  ...+..|++|.|.
T Consensus       125 ~~~~~~--~~~g~iD~lVnnA  143 (317)
T 3oec_A          125 VVDEAL--AEFGHIDILVSNV  143 (317)
T ss_dssp             HHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHH--HHcCCCCEEEECC
Confidence            222221  1235789999884

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=91.49  E-value=1.1  Score=38.00  Aligned_cols=83  Identities=14%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--C-CeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~-~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+...  + ++.++.+|+.+..-....++.+.  ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   83 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKAR--DL   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH--HT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHH--Hh
Confidence            46788888865442   33444556899999999988776665554421  3 78899999887543222222221  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+ .|++|.|.-
T Consensus        84 ~g-id~lv~~Ag   94 (260)
T 2z1n_A           84 GG-ADILVYSTG   94 (260)
T ss_dssp             TC-CSEEEECCC
T ss_pred             cC-CCEEEECCC
Confidence            24 899998853

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=91.44  E-value=0.87  Score=38.83  Aligned_cols=83  Identities=12%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEE-eCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~gi-D~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.+ +.+++..+.+.+.+... .++.++.+|+.+..-....++.+.  ...
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQID--ETF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            46778877865443   344555668998886 88988887777766554 389999999987653333333222  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        81 g~id~lv~nA   90 (258)
T 3oid_A           81 GRLDVFVNNA   90 (258)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999885

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=91.38  E-value=0.74  Score=38.64  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|+ +|.++..++    +.|.+|+.++.+++..+...+.+... +++.++.+|+.+..-....++.+.+  ..
T Consensus        10 ~~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~   86 (255)
T 1fmc_A           10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS--KL   86 (255)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH--hc
Confidence            4678887774 556555554    45889999999988776665555433 4788999998875432222222211  22


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|+||.|.
T Consensus        87 ~~~d~vi~~A   96 (255)
T 1fmc_A           87 GKVDILVNNA   96 (255)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=91.37  E-value=1.2  Score=38.48  Aligned_cols=83  Identities=18%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++ |.++.    .+++.|++|+.++.+++..+.+.+.+..  ..++.++.+|+.+..-....++-+.  ..
T Consensus        25 ~~k~vlITGas-ggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~  101 (302)
T 1w6u_A           25 QGKVAFITGGG-TGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI--KV  101 (302)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHH--HH
Confidence            46788888864 44444    4455689999999998877666555432  2478999999987543222222221  23


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|.-
T Consensus       102 ~g~id~li~~Ag  113 (302)
T 1w6u_A          102 AGHPNIVINNAA  113 (302)
T ss_dssp             TCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            357899998753

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.34  E-value=0.86  Score=38.85  Aligned_cols=83  Identities=10%  Similarity=0.088  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEE-eCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~gi-D~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+ +.+++..+.+...++.. +++.++.+|+.+..-....++.+.  ...
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAA--DKF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            46789988876553   445556669999988 67777776666666544 478999999987653333333222  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        85 g~id~lv~nA   94 (259)
T 3edm_A           85 GEIHGLVHVA   94 (259)
T ss_dssp             CSEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=91.34  E-value=0.78  Score=39.61  Aligned_cols=81  Identities=14%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+.  +++.++.+|+.+..-....++.+.  ...+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  102 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG--DDALCVPTDVTDPDSVRALFTATV--EKFGR  102 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT--SCCEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46788887865443   344556669999999999988877766653  578999999987653333333222  12357


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus       103 iD~lVnnA  110 (272)
T 4dyv_A          103 VDVLFNNA  110 (272)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=91.34  E-value=0.55  Score=40.59  Aligned_cols=81  Identities=14%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++ |.++.    .+++.|.+|++++.+++.++.+...+...  .++.++.+|+.+.......++.+.  ..
T Consensus        27 ~~k~vlITGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~  103 (286)
T 1xu9_A           27 QGKKVIVTGAS-KGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG--KL  103 (286)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHH--HH
Confidence            46789988864 44444    44556899999999988877666554332  268889999887543222222221  12


Q ss_pred             CCCceEEEEc
Q 023240          215 SSGFAKVVAN  224 (285)
Q Consensus       215 ~~~~D~Vv~n  224 (285)
                      .+..|++|.|
T Consensus       104 ~g~iD~li~n  113 (286)
T 1xu9_A          104 MGGLDMLILN  113 (286)
T ss_dssp             HTSCSEEEEC
T ss_pred             cCCCCEEEEC
Confidence            2468999977

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.28  E-value=0.93  Score=40.87  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=37.9

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q 023240          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~  181 (285)
                      ....+.++++||=+|+|. |.++..+|+. |+ +|+++|.+++..+.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            345677889999999864 6677777775 77 89999999998888875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=91.25  E-value=0.91  Score=40.96  Aligned_cols=47  Identities=19%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q 023240          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~  181 (285)
                      ....+.++++||-+|+|. |.++..+|+. |+ +|+++|.+++..+.+++
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            345667889999999864 6677777775 77 89999999999888874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=91.22  E-value=0.63  Score=42.44  Aligned_cols=50  Identities=22%  Similarity=0.264  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      .+....+.++++||-+|+|. |.++..+|+. |+ +|+++|.+++.++.+++.
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l  229 (398)
T 1kol_A          177 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ  229 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc
Confidence            33456777899999999865 7788888876 77 799999999999988753

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=91.22  E-value=0.87  Score=39.15  Aligned_cols=83  Identities=17%  Similarity=0.126  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++. +++..+.+.+.+... +++.++.+|+.+..-....++.+.  ...
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~--~~~  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVI--ERW  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            46788888865443   34455666999999998 677666666555543 478999999988653333333222  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus       105 g~id~lv~nA  114 (269)
T 4dmm_A          105 GRLDVLVNNA  114 (269)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999884

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=91.21  E-value=1.1  Score=38.06  Aligned_cols=83  Identities=12%  Similarity=0.121  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|+ +|.++..+    ++.|++|+.++.+++..+.+...+... .++.++.+|+.+..-....++.+.+ .-.
T Consensus        13 ~~k~vlITGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   90 (266)
T 1xq1_A           13 KAKTVLVTGG-TKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS-MFG   90 (266)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-HHT
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH-HhC
Confidence            4678887775 44454444    455899999999988777665555433 3788999998775422222222211 111


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        91 ~~id~li~~A  100 (266)
T 1xq1_A           91 GKLDILINNL  100 (266)
T ss_dssp             TCCSEEEEEC
T ss_pred             CCCcEEEECC
Confidence            5689999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=91.18  E-value=0.85  Score=38.65  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccc--ccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF--VKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~--~~~~~~~~~~d~~~~~~  213 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...  .++.++..|+  .+..-....++.+.  .
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~   88 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA--V   88 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH--H
Confidence            46788888865443   34455666999999999998887776655432  3788999998  44332222222222  2


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+..|++|.|.
T Consensus        89 ~~g~id~lv~nA  100 (252)
T 3f1l_A           89 NYPRLDGVLHNA  100 (252)
T ss_dssp             HCSCCSEEEECC
T ss_pred             hCCCCCEEEECC
Confidence            345789999874

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=91.17  E-value=0.92  Score=38.19  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccHHH----HHHHHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t----~~la~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++ |.++    ..+++.|++|+.++. +++..+.+.+.+... +++.++.+|+.+..-....++.+.+  .
T Consensus         3 ~~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~   79 (246)
T 2uvd_A            3 KGKVALVTGAS-RGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD--V   79 (246)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--H
Confidence            35678877754 4444    444556899999999 877776665555433 4788899998875432222222211  2


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|++|.|.
T Consensus        80 ~g~id~lv~nA   90 (246)
T 2uvd_A           80 FGQVDILVNNA   90 (246)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999874

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=91.16  E-value=0.97  Score=38.33  Aligned_cols=82  Identities=12%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHH--HHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM--VGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~--v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++++|=.|++.|.   ++..+++.|++|+.++.+++.  .+.+.+.+... +++.++.+|+.+..-....++.+.  ...
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAA--EKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            4577777865442   344455569999999998776  55555555433 478899999887543222222221  122


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        80 g~iD~lv~nA   89 (258)
T 3a28_C           80 GGFDVLVNNA   89 (258)
T ss_dssp             TCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999884

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=91.10  E-value=1.1  Score=38.80  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+....  .+++.++.+|+.+..-....++.+.  ...+.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  101 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI--GSKAFGVRVDVSSAKDAESMVEKTT--AKWGR  101 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46789988876543   44455666999999999988777666554  2478899999987643333333222  12356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus       102 iD~lv~nAg  110 (277)
T 4dqx_A          102 VDVLVNNAG  110 (277)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998743

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.10  E-value=1.1  Score=40.31  Aligned_cols=48  Identities=17%  Similarity=0.304  Sum_probs=38.1

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      ....+.++++||-+|+|. |.++..+|+. |+ +|+++|.+++..+.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l  234 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            345667889999999864 6677777775 77 899999999999888754

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=91.10  E-value=1.2  Score=37.12  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|+ +|.++..+    ++.|++|+.++.+++..+.+...+..  ..++.++.+|+.+..-....++-+.  ..
T Consensus         6 ~~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   82 (248)
T 2pnf_A            6 QGKVSLVTGS-TRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIY--NL   82 (248)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHH--Hh
Confidence            4667887775 45555444    44589999999998877666554432  2478899999887543222222221  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|+||.|.-
T Consensus        83 ~~~~d~vi~~Ag   94 (248)
T 2pnf_A           83 VDGIDILVNNAG   94 (248)
T ss_dssp             SSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            356899998743

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.09  E-value=1.1  Score=40.47  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=37.6

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q 023240          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~  181 (285)
                      ....+.++++||-+|+|. |.++..+|+. |+ +|+++|.+++..+.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            345667889999999864 6677777775 77 89999999998888864

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=91.06  E-value=0.93  Score=38.37  Aligned_cols=81  Identities=17%  Similarity=0.259  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+..  ++..+..|+.+..-....++.+.  ...+.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~   83 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD--NGKGMALNVTNPESIEAVLKAIT--DEFGG   83 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG--GEEEEECCTTCHHHHHHHHHHHH--HHHCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--cceEEEEeCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888876543   4455566699999999999888777666542  57788889887643333333222  12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        84 iD~lv~nA   91 (248)
T 3op4_A           84 VDILVNNA   91 (248)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999984

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=91.02  E-value=1.1  Score=40.00  Aligned_cols=94  Identities=18%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             cCCCCCEEEEEcCcc-cHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          138 AVQEGDIVLEIGPGT-GSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       138 ~~~~~~~VLDiGcG~-G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+.++++||=+|+|. |.++..+|+.  +.+|+++|.+++..+.+++.    +--.++..+-   ...    +.+.+...
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~~~i~~~~---~~~----~~v~~~t~  236 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GADAAVKSGA---GAA----DAIRELTG  236 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCSEEEECST---THH----HHHHHHHG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCEEEcCCC---cHH----HHHHHHhC
Confidence            567889999999875 7777788775  67999999999999988764    2222332211   111    11211133


Q ss_pred             CCCceEEEEcCCCC-CcHHHHHHhccCCC
Q 023240          215 SSGFAKVVANIPFN-ISTDVIKQLLPMGD  242 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~-~~~~i~~~l~~~g~  242 (285)
                      ...+|+||-...-. .....++.+.++|.
T Consensus       237 g~g~d~v~d~~G~~~~~~~~~~~l~~~G~  265 (345)
T 3jv7_A          237 GQGATAVFDFVGAQSTIDTAQQVVAVDGH  265 (345)
T ss_dssp             GGCEEEEEESSCCHHHHHHHHHHEEEEEE
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhcCCE
Confidence            44789998865543 23344444444433

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=90.99  E-value=1  Score=38.80  Aligned_cols=83  Identities=11%  Similarity=0.106  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+.+..+.+...+..  ..++.++.+|+.+..-....++.+.  ...
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~  103 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQAL--KEF  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            57789988876543   3445555689999999998877666555432  2478999999987643333332222  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus       104 g~id~lv~nA  113 (277)
T 4fc7_A          104 GRIDILINCA  113 (277)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999884

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.95  E-value=0.54  Score=42.58  Aligned_cols=49  Identities=22%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~  181 (285)
                      .+....+.++++||-+|+|. |.++..+|+. |++|+++|.+++..+.+++
T Consensus       186 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          186 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34445677899999999974 7777777775 8899999999999988876

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=90.95  E-value=1  Score=37.49  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=52.3

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhh--cCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+.  ...++.++.+|+.+..-....++.+.  ...+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVL--ERFG   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HH--HHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHH--HhcC
Confidence            4577877865432   344455568999999999888777665553  22488999999987643222222221  1224


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        80 ~id~li~~A   88 (235)
T 3l77_A           80 DVDVVVANA   88 (235)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.93  E-value=0.82  Score=39.97  Aligned_cols=83  Identities=12%  Similarity=0.202  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-C---CeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D---QLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~---~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++++++..+.+...+... +   ++.++.+|+.+..-....++.+.  .
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL--A  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH--H
Confidence            46788888865442   33444556899999999988777666555433 2   68899999887643222222221  1


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+..|++|.|.
T Consensus       103 ~~g~iD~lvnnA  114 (297)
T 1xhl_A          103 KFGKIDILVNNA  114 (297)
T ss_dssp             HHSCCCEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            225689999874

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=90.91  E-value=0.97  Score=39.05  Aligned_cols=81  Identities=14%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.......  +++.++.+|+.+..-....++-+.  ...+.
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   79 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG--GNAVGVVGDVRSLQDQKRAAERCL--AAFGK   79 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB--TTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC--CcEEEEEcCCCCHHHHHHHHHHHH--HhcCC
Confidence            46788888876553   445556669999999999888776665542  478999999987643332222222  12357


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        80 iD~lvnnA   87 (281)
T 3zv4_A           80 IDTLIPNA   87 (281)
T ss_dssp             CCEEECCC
T ss_pred             CCEEEECC
Confidence            89999874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=90.91  E-value=0.52  Score=40.93  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-C-CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+... + .+.++.+|+.+..-....++.+.+  ..
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~  109 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA--EF  109 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence            46788888865443   34445556999999999998877776655432 2 458899999876533333333221  23


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus       110 g~iD~lvnnA  119 (281)
T 4dry_A          110 ARLDLLVNNA  119 (281)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=90.84  E-value=0.72  Score=41.21  Aligned_cols=96  Identities=19%  Similarity=0.211  Sum_probs=56.0

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ....+ ++++||-+|+|. |..+..+++. |+ +|+++|.+++..+.+++.    +--.++  |..+..+.    +.+.+
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~~~~--~~~~~~~~----~~v~~  230 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GADYVI--NPFEEDVV----KEVMD  230 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCSEEE--CTTTSCHH----HHHHH
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEE--CCCCcCHH----HHHHH
Confidence            34456 789999999863 6677777765 77 899999999988888753    211222  22111111    11111


Q ss_pred             hcCCCCceEEEEcCCC-CCcHHHHHHhccCC
Q 023240          212 RKSSSGFAKVVANIPF-NISTDVIKQLLPMG  241 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~-~~~~~i~~~l~~~g  241 (285)
                      ......+|+||-+... ......++.+.++|
T Consensus       231 ~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G  261 (348)
T 2d8a_A          231 ITDGNGVDVFLEFSGAPKALEQGLQAVTPAG  261 (348)
T ss_dssp             HTTTSCEEEEEECSCCHHHHHHHHHHEEEEE
T ss_pred             HcCCCCCCEEEECCCCHHHHHHHHHHHhcCC
Confidence            1233468999987664 22234444444443

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=90.81  E-value=1.2  Score=38.36  Aligned_cols=82  Identities=17%  Similarity=0.194  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++ |.++..+++    .|.+|+.++.+++..+.+.+.+... .++.++.+|+.+.......++.+.  ...
T Consensus        43 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~  119 (285)
T 2c07_A           43 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL--TEH  119 (285)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHH--Hhc
Confidence            35788888855 555555544    4789999999988777666665543 478899999987543222222221  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|+||.|.
T Consensus       120 ~~id~li~~A  129 (285)
T 2c07_A          120 KNVDILVNNA  129 (285)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.75  E-value=1.1  Score=39.00  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHH-HHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQH-MVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~-~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++ ..+.+.+..+.. .++.++.+|+.+..-....++.+.  ...
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETV--RQL  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            57789999976543   34455666999999999865 344444444433 388999999987643333232222  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus       124 g~iD~lvnnA  133 (291)
T 3ijr_A          124 GSLNILVNNV  133 (291)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999873

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=90.74  E-value=0.87  Score=40.80  Aligned_cols=97  Identities=20%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             HHhcCCCCCEEEEEc--CcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          135 AAAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       135 ~~l~~~~~~~VLDiG--cG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +...++++++||=+|  .|.|..+..+++. |++|++++.+++..+.+++.    +.-.++.  ..+..+.    +.+.+
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~~~~~--~~~~~~~----~~~~~  230 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAKRGIN--YRSEDFA----AVIKA  230 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCSEEEE--TTTSCHH----HHHHH
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCCEEEe--CCchHHH----HHHHH
Confidence            345667889999995  3467777777775 88999999999999888764    2112222  2121111    11111


Q ss_pred             hcCCCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      .. ...+|+||-+..-......+..+.++|.
T Consensus       231 ~~-~~g~Dvvid~~g~~~~~~~~~~l~~~G~  260 (353)
T 4dup_A          231 ET-GQGVDIILDMIGAAYFERNIASLAKDGC  260 (353)
T ss_dssp             HH-SSCEEEEEESCCGGGHHHHHHTEEEEEE
T ss_pred             Hh-CCCceEEEECCCHHHHHHHHHHhccCCE
Confidence            13 4578999987665444555555555443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.72  E-value=0.6  Score=38.74  Aligned_cols=71  Identities=20%  Similarity=0.181  Sum_probs=47.6

Q ss_pred             EEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          145 VLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       145 VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      |+=+|+  |..+..+++    .+.+|+.+|.+++.++.+.+..    ++.++.||+.+....       +. ..-...|.
T Consensus         3 iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l-------~~-a~i~~ad~   68 (218)
T 3l4b_C            3 VIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHKEIL-------RD-AEVSKNDV   68 (218)
T ss_dssp             EEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHH-------HH-HTCCTTCE
T ss_pred             EEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHH-------Hh-cCcccCCE
Confidence            555564  666666554    4789999999999888765542    578899999875321       11 22356788


Q ss_pred             EEEcCCCCC
Q 023240          221 VVANIPFNI  229 (285)
Q Consensus       221 Vv~n~P~~~  229 (285)
                      ||...|-..
T Consensus        69 vi~~~~~d~   77 (218)
T 3l4b_C           69 VVILTPRDE   77 (218)
T ss_dssp             EEECCSCHH
T ss_pred             EEEecCCcH
Confidence            888766543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=90.72  E-value=1.4  Score=38.07  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeC-CHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~-~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++. +++..+...+.+...  +++.++.+|+.+..-....++.+.  ..
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~  101 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA--DR  101 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH--HH
Confidence            46789988875543   44455666999999998 667666666655543  478899999987643333333222  23


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|.-
T Consensus       102 ~g~iD~lv~nAg  113 (281)
T 3v2h_A          102 FGGADILVNNAG  113 (281)
T ss_dssp             TSSCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            357899998843

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=90.70  E-value=0.87  Score=39.30  Aligned_cols=82  Identities=10%  Similarity=0.118  Sum_probs=53.6

Q ss_pred             CEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       143 ~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      +++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...+++.++.+|+.+..-....++.+.  ...+..|
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~iD   99 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLP--EEFATLR   99 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCC--GGGSSCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHhCCCC
Confidence            578888865442   44556667999999999988877766665433578899999887542222221111  1235689


Q ss_pred             EEEEcCC
Q 023240          220 KVVANIP  226 (285)
Q Consensus       220 ~Vv~n~P  226 (285)
                      ++|.|.-
T Consensus       100 ~lvnnAG  106 (272)
T 2nwq_A          100 GLINNAG  106 (272)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999853

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=90.69  E-value=1.1  Score=38.58  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++.+.+...  .++.++.+|+.+..-....++.+.  ...+.
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  101 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG--KDVFVFSANLSDRKSIKQLAEVAE--REMEG  101 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHHHHHHHHHH--HHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEeecCCHHHHHHHHHHHH--HHcCC
Confidence            57788888866543   344555669999999999888777665542  478999999987653333333222  12356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus       102 iD~lvnnAg  110 (266)
T 3grp_A          102 IDILVNNAG  110 (266)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998843

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=90.66  E-value=1.2  Score=38.71  Aligned_cols=60  Identities=12%  Similarity=0.102  Sum_probs=42.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEe-CCHHHHHHHHHHhh-cC-CCeEEEEccccccc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFA-SI-DQLKVLQEDFVKCH  200 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD-~~~~~v~~a~~~~~-~~-~~v~~~~gD~~~~~  200 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++ .+++.++.+.+.+. .. .++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            46788877865443   3444555689999999 99888777666553 22 47899999998765

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=90.65  E-value=1.1  Score=38.46  Aligned_cols=81  Identities=11%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+.  .++.++.+|+.+..-....++-+.  ...+.
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   80 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEAL--EEFGR   80 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888865442   344455568999999999887766655443  478889999887543222222221  12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        81 iD~lvnnA   88 (263)
T 2a4k_A           81 LHGVAHFA   88 (263)
T ss_dssp             CCEEEEGG
T ss_pred             CcEEEECC
Confidence            89999873

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=90.60  E-value=1.1  Score=37.85  Aligned_cols=82  Identities=12%  Similarity=0.080  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccHHHH----HHHH-hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLN-AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~-~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      ++++||=.|+ +|.++.    .|++ .|++|+.++.+++..+.+.+.+... .++.++.+|+.+..-....++.+..  .
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~   79 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK--E   79 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH--h
Confidence            4567887774 455544    4455 6889999999988777666665443 4789999998875432222222211  2


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|+||.|.
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=90.60  E-value=1.1  Score=38.28  Aligned_cols=82  Identities=10%  Similarity=0.067  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeC-CHHHHHHHHHHhhc--CCCeEEEEcccccc----cchhhhhhHH
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEK-DQHMVGLVRERFAS--IDQLKVLQEDFVKC----HIRSHMLSLF  209 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~-~~~~v~~a~~~~~~--~~~v~~~~gD~~~~----~~~~~~~d~~  209 (285)
                      .++++|=.|++ |.++.    .+++.|++|+.++. +++..+.+.+.+..  .+++.++.+|+.+.    .-....++.+
T Consensus        10 ~~k~~lVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           10 ECPAAVITGGA-RRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             -CCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            35678877755 44444    44556899999999 88777766655542  24789999999876    3222222222


Q ss_pred             hhhcCCCCceEEEEcC
Q 023240          210 ERRKSSSGFAKVVANI  225 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~  225 (285)
                      .  ...+..|++|.|.
T Consensus        89 ~--~~~g~id~lv~nA  102 (276)
T 1mxh_A           89 F--RAFGRCDVLVNNA  102 (276)
T ss_dssp             H--HHHSCCCEEEECC
T ss_pred             H--HhcCCCCEEEECC
Confidence            1  1224689999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=90.57  E-value=0.81  Score=40.92  Aligned_cols=49  Identities=29%  Similarity=0.415  Sum_probs=39.4

Q ss_pred             HHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      +....+.++++||-+|+|. |..+..+|+. |++|+++|.+++..+.+++.
T Consensus       161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  211 (352)
T 1e3j_A          161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC  211 (352)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh
Confidence            3556777899999999874 6777777775 88999999999999888753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.52  E-value=0.7  Score=45.51  Aligned_cols=33  Identities=27%  Similarity=0.184  Sum_probs=25.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh------------C--CEEEEEeCCH
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA------------G--ATVLAIEKDQ  173 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~------------~--~~V~giD~~~  173 (285)
                      +.-+|+|+|.|+|+..+.+.+.            .  .+++++|..|
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p  104 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYP  104 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCC
Confidence            3468999999999987766442            1  4799999844

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=90.52  E-value=1.2  Score=37.34  Aligned_cols=84  Identities=14%  Similarity=0.255  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccc--ccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF--VKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~--~~~~~~~~~~d~~~~~~  213 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...  +++.++..|.  .+..-....++.+.  .
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~--~   90 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE--H   90 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH--H
Confidence            46788888875443   34455566899999999999888877766543  3677888877  33221112222221  1


Q ss_pred             CCCCceEEEEcCC
Q 023240          214 SSSGFAKVVANIP  226 (285)
Q Consensus       214 ~~~~~D~Vv~n~P  226 (285)
                      ..+..|++|.|.-
T Consensus        91 ~~g~id~lv~nAg  103 (247)
T 3i1j_A           91 EFGRLDGLLHNAS  103 (247)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             hCCCCCEEEECCc
Confidence            2356899998854

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.51  E-value=1.8  Score=32.44  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +.+|+=+|+  |..+..++    +.+.+|+.+|.+++.++.++...    ++.++.+|..+...       +.. .....
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~-------l~~-~~~~~   69 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKT-------LED-AGIED   69 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHH-------HHH-TTTTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHH-------HHH-cCccc
Confidence            357888877  55554444    34789999999998877665432    46677888754321       110 11245


Q ss_pred             ceEEEEcCCCC
Q 023240          218 FAKVVANIPFN  228 (285)
Q Consensus       218 ~D~Vv~n~P~~  228 (285)
                      .|+||...|..
T Consensus        70 ~d~vi~~~~~~   80 (140)
T 1lss_A           70 ADMYIAVTGKE   80 (140)
T ss_dssp             CSEEEECCSCH
T ss_pred             CCEEEEeeCCc
Confidence            78888876654

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=90.46  E-value=1.1  Score=38.38  Aligned_cols=84  Identities=14%  Similarity=0.200  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHh-hc-CCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERF-AS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~-~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+ .. ..++.++.+|+.+..-....++.+.  ...
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   97 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK--EKF   97 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            46788888865442   34445556899999999988776665544 21 2478889999887543222222221  122


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus        98 g~iD~lvnnAg  108 (267)
T 1vl8_A           98 GKLDTVVNAAG  108 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            56899998743

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=90.39  E-value=0.87  Score=40.83  Aligned_cols=97  Identities=19%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             HhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      ...+.++++||-.|+  |.|..+..+++. |++|++++.+++..+.+++.    +.-.++  |..+....    +.+...
T Consensus       157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~----~~~~~~  226 (354)
T 2j8z_A          157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAAAGF--NYKKEDFS----EATLKF  226 (354)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCSEEE--ETTTSCHH----HHHHHH
T ss_pred             hcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCcEEE--ecCChHHH----HHHHHH
Confidence            345678899999984  567777777665 88999999999988888543    111122  22221111    111111


Q ss_pred             cCCCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      .....+|++|-+..-......++.+.++|.
T Consensus       227 ~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~  256 (354)
T 2j8z_A          227 TKGAGVNLILDCIGGSYWEKNVNCLALDGR  256 (354)
T ss_dssp             TTTSCEEEEEESSCGGGHHHHHHHEEEEEE
T ss_pred             hcCCCceEEEECCCchHHHHHHHhccCCCE
Confidence            233468999987654434444555544443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=90.36  E-value=1.1  Score=38.05  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+...+...   +++.++.+|+.+..-....++-+.  ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   83 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV--DH   83 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHH--HH
Confidence            46788888865432   33445556899999999988776655555431   368889999887542222222221  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|.-
T Consensus        84 ~g~id~lv~~Ag   95 (267)
T 2gdz_A           84 FGRLDILVNNAG   95 (267)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            256899998853

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=90.30  E-value=1.2  Score=38.15  Aligned_cols=82  Identities=17%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .+++||=.|++ |.++..    +++.|++|+.++.++...+.+...+...   +++.++.+|+.+..-....++.+.  .
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~  107 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR--S  107 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH--H
Confidence            46788888854 444444    4455899999999988777666555432   357888999887543222222221  1


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+.+|+||.|.
T Consensus       108 ~~g~iD~vi~~A  119 (279)
T 1xg5_A          108 QHSGVDICINNA  119 (279)
T ss_dssp             HHCCCSEEEECC
T ss_pred             hCCCCCEEEECC
Confidence            224689999874

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.29  E-value=1.3  Score=37.60  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .++++|=.|++    .|. ++..+++.|++|+.++.++...+.+.+..+..+  ++.++.+|+.+..-....++.+.+  
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE--   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH--
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH--
Confidence            46788989865    454 556677779999999998766666655554432  689999999886543333333322  


Q ss_pred             CCCCceEEEEcCC
Q 023240          214 SSSGFAKVVANIP  226 (285)
Q Consensus       214 ~~~~~D~Vv~n~P  226 (285)
                      ..+..|++|.|.-
T Consensus        84 ~~g~id~li~~Ag   96 (266)
T 3oig_A           84 QVGVIHGIAHCIA   96 (266)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCeeEEEEccc
Confidence            2356899998854

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=90.28  E-value=1.3  Score=36.99  Aligned_cols=81  Identities=11%  Similarity=0.117  Sum_probs=51.3

Q ss_pred             CCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHh-hcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERF-ASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~-~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++||=.|++ |.++..    +++.|++|+.++.+++..+.+.+.+ ... +++.++.+|+.+..-....++.+.  ...
T Consensus         2 ~k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   78 (250)
T 2cfc_A            2 SRVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATM--EQF   78 (250)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHh
Confidence            3567877754 554444    4455899999999988777666555 222 378899999987543222222221  122


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        79 ~~id~li~~A   88 (250)
T 2cfc_A           79 GAIDVLVNNA   88 (250)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=90.27  E-value=0.58  Score=42.03  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=36.7

Q ss_pred             HhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240          136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       136 ~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~  181 (285)
                      ...+.++++||-.|+  |.|..+..+++. |++|++++.+++..+.+++
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence            346678899999997  567777777665 8899999999988887654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=90.25  E-value=1.2  Score=37.80  Aligned_cols=81  Identities=21%  Similarity=0.191  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+.  .++.++.+|+.+..-....++.+.  ...+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~--~~~g~   86 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE--NGGFAVEVDVTKRASVDAAMQKAI--DALGG   86 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT--TCCEEEECCTTCHHHHHHHHHHHH--HHHTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cCCeEEEEeCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888865432   334445568999999999877666554443  267888999877543222222221  12246


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        87 iD~lv~~A   94 (263)
T 3ak4_A           87 FDLLCANA   94 (263)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.22  E-value=0.48  Score=44.56  Aligned_cols=68  Identities=13%  Similarity=0.295  Sum_probs=47.6

Q ss_pred             CEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          143 DIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      .+|+=+||  |..+..+|+.    +.+|+.||.+++.++.+...+    .+.+++||+.+...       ++. ..-...
T Consensus         4 M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~----~~~~i~Gd~~~~~~-------L~~-Agi~~a   69 (461)
T 4g65_A            4 MKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY----DLRVVNGHASHPDV-------LHE-AGAQDA   69 (461)
T ss_dssp             EEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS----SCEEEESCTTCHHH-------HHH-HTTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc----CcEEEEEcCCCHHH-------HHh-cCCCcC
Confidence            45666665  5566666553    679999999999999888776    58899999988643       111 233556


Q ss_pred             eEEEEc
Q 023240          219 AKVVAN  224 (285)
Q Consensus       219 D~Vv~n  224 (285)
                      |++++-
T Consensus        70 d~~ia~   75 (461)
T 4g65_A           70 DMLVAV   75 (461)
T ss_dssp             SEEEEC
T ss_pred             CEEEEE
Confidence            777763

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.20  E-value=1.1  Score=38.45  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHh---hcC-CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERF---ASI-DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~---~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+   ... +++.++.+|+.+..-....++.+.  .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~   82 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL--G   82 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH--H
Confidence            45678887865432   33445556899999999988777766655   222 368889999887543222222221  1


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      ..+..|++|.|.
T Consensus        83 ~~g~id~lv~~A   94 (278)
T 1spx_A           83 KFGKLDILVNNA   94 (278)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            224689999874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=90.20  E-value=1.5  Score=39.35  Aligned_cols=96  Identities=14%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             HHhcCCCCCEEEEEc--CcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          135 AAAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       135 ~~l~~~~~~~VLDiG--cG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ....+.++++||-+|  .|.|..+..+++. |++|++++.+++..+.+++.    +.-.++..+  +..+    .+.+..
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~~~~~~~--~~~~----~~~~~~  226 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----GCDRPINYK--TEPV----GTVLKQ  226 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSEEEETT--TSCH----HHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----CCcEEEecC--ChhH----HHHHHH
Confidence            344677899999999  4678888888775 88999999999888888752    211222221  1111    111211


Q ss_pred             hcCCCCceEEEEcCCCCCcHHHHHHhccCC
Q 023240          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g  241 (285)
                       .....+|+||-+..-......++.+.++|
T Consensus       227 -~~~~g~D~vid~~g~~~~~~~~~~l~~~G  255 (362)
T 2c0c_A          227 -EYPEGVDVVYESVGGAMFDLAVDALATKG  255 (362)
T ss_dssp             -HCTTCEEEEEECSCTHHHHHHHHHEEEEE
T ss_pred             -hcCCCCCEEEECCCHHHHHHHHHHHhcCC
Confidence             12346899988765433334444444443

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=90.19  E-value=2  Score=38.86  Aligned_cols=101  Identities=15%  Similarity=0.057  Sum_probs=58.9

Q ss_pred             HHHhc-CCCCCEEEEEcCc-ccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccc-cccchhhhhhH
Q 023240          134 AAAAA-VQEGDIVLEIGPG-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV-KCHIRSHMLSL  208 (285)
Q Consensus       134 ~~~l~-~~~~~~VLDiGcG-~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~-~~~~~~~~~d~  208 (285)
                      +.... +.++++||-+|+| .|.++..+|+. | .+|++++.+++..+.+++.    +--.++..+.. +..+    .+.
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~----~~~  258 (380)
T 1vj0_A          187 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GADLTLNRRETSVEER----RKA  258 (380)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCSEEEETTTSCHHHH----HHH
T ss_pred             HHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CCcEEEeccccCcchH----HHH
Confidence            34456 6788999999966 46677777775 7 5999999999998888743    21223322100 1111    111


Q ss_pred             HhhhcCCCCceEEEEcCCCC-CcHHHHHHhccCCC
Q 023240          209 FERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGD  242 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~-~~~~i~~~l~~~g~  242 (285)
                      +........+|+||-+.... .....++.+.++|.
T Consensus       259 v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~  293 (380)
T 1vj0_A          259 IMDITHGRGADFILEATGDSRALLEGSELLRRGGF  293 (380)
T ss_dssp             HHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEE
T ss_pred             HHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCE
Confidence            21112334689999876543 33444555544443

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.19  E-value=1.1  Score=38.92  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCC---EEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGA---TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~---~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .++++|=.|++.|.   ++..+++.|+   +|+.++.+++.++.+.+.+..   ..++.++.+|+.+..-....++.+. 
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~-  110 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP-  110 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC-
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH-
Confidence            47789999976543   3344455565   999999999888877766643   2378889999987653322222221 


Q ss_pred             hcCCCCceEEEEcC
Q 023240          212 RKSSSGFAKVVANI  225 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~  225 (285)
                       ...+..|++|.|.
T Consensus       111 -~~~g~iD~lVnnA  123 (287)
T 3rku_A          111 -QEFKDIDILVNNA  123 (287)
T ss_dssp             -GGGCSCCEEEECC
T ss_pred             -HhcCCCCEEEECC
Confidence             2235789999874

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=90.16  E-value=0.77  Score=39.66  Aligned_cols=82  Identities=10%  Similarity=0.077  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|++.|.   .+..+++.|++|+.++.+++..+.+.+..+..+++..+..|+.+..-....++-+.  ..-+.
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~--~~~G~   83 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTI--ATFGR   83 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            57888888887665   45667777999999999876555444433344688999999887543222222221  23467


Q ss_pred             ceEEEEc
Q 023240          218 FAKVVAN  224 (285)
Q Consensus       218 ~D~Vv~n  224 (285)
                      .|++|.|
T Consensus        84 iDiLVNn   90 (258)
T 4gkb_A           84 LDGLVNN   90 (258)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEC
Confidence            8999987

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=90.08  E-value=1.3  Score=37.20  Aligned_cols=78  Identities=15%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++++||=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+.  +++.++.+|..+...   ...++   ...+.
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~---~~~~~---~~~~~   84 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK--DNYTIEVCNLANKEE---CSNLI---SKTSN   84 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHH---HHHHH---HTCSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc--cCccEEEcCCCCHHH---HHHHH---HhcCC
Confidence            57789988875443   344555568999999999988887776654  478888898877532   22233   22356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus        85 id~li~~Ag   93 (249)
T 3f9i_A           85 LDILVCNAG   93 (249)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998854

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=90.06  E-value=1.3  Score=40.12  Aligned_cols=47  Identities=23%  Similarity=0.315  Sum_probs=38.0

Q ss_pred             HHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q 023240          135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~  181 (285)
                      ....+.++++||=+|+| .|.++..+|+. |+ +|+++|.+++.++.+++
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            44567788999999986 37777777776 77 89999999999888774

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=90.02  E-value=1.4  Score=37.73  Aligned_cols=80  Identities=20%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+   +++.++.+|+.+..-....++.+.  ...+.
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~   82 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETI--RRFGR   82 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCeEEEcCCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888865443   34445556899999999988776655543   358889999887543222222221  12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        83 iD~lv~nA   90 (270)
T 1yde_A           83 LDCVVNNA   90 (270)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=89.98  E-value=0.96  Score=38.82  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|.+++.++.+.+.+  ..++.++.+|+.+..-....++.+.  ...+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   85 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDFTI--DTFGR   85 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHH--HHcCC
Confidence            46788988876543   44556667999999999988777666555  2478899999887643333332222  12356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus        86 id~lv~nAg   94 (271)
T 3tzq_B           86 LDIVDNNAA   94 (271)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998843

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=89.97  E-value=1.8  Score=39.59  Aligned_cols=45  Identities=29%  Similarity=0.439  Sum_probs=36.3

Q ss_pred             cCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          138 AVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       138 ~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      .+.++++||=+|+|. |.++..+|+. |+ +|+++|.+++..+.+++.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            466889999999864 6667777765 77 999999999999988765

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=89.92  E-value=1.1  Score=38.50  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=52.7

Q ss_pred             CEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       143 ~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      ++||=-|++.|.   ++..+++.|++|+.+|++++..+.+.+.   .+++..+.+|+.+..-....++.+.  ..-+..|
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~v~~~~--~~~g~iD   77 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE---RPNLFYFHGDVADPLTLKKFVEYAM--EKLQRID   77 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT---CTTEEEEECCTTSHHHHHHHHHHHH--HHHSCCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCCEEEEEecCCCHHHHHHHHHHHH--HHcCCCC
Confidence            467766766654   4566677799999999998776654432   3588899999987643333333222  2346789


Q ss_pred             EEEEcC
Q 023240          220 KVVANI  225 (285)
Q Consensus       220 ~Vv~n~  225 (285)
                      ++|.|-
T Consensus        78 iLVNNA   83 (247)
T 3ged_A           78 VLVNNA   83 (247)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=89.91  E-value=1.4  Score=39.06  Aligned_cols=60  Identities=12%  Similarity=0.102  Sum_probs=42.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEe-CCHHHHHHHHHHhh-cC-CCeEEEEccccccc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFA-SI-DQLKVLQEDFVKCH  200 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD-~~~~~v~~a~~~~~-~~-~~v~~~~gD~~~~~  200 (285)
                      .+++||=.|++.|.   ++..|++.|++|+.++ .+++.++.+.+.+. .. .++.++.+|+.+..
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA  110 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCch
Confidence            46788877765443   3344555689999999 99888777666553 22 47899999998765

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=89.85  E-value=1.1  Score=37.81  Aligned_cols=81  Identities=15%  Similarity=0.227  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++++++..+.+.+.+  .+++.++.+|+.+..-....++-+.  ...+.
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   80 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQ--RRLGT   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHH--HHHCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            46678877765432   33444556899999999988776665554  2478889999887543222222221  12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        81 id~lv~~A   88 (253)
T 1hxh_A           81 LNVLVNNA   88 (253)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=89.65  E-value=1.7  Score=36.14  Aligned_cols=81  Identities=9%  Similarity=0.066  Sum_probs=52.0

Q ss_pred             CCEEEEEcCcccHHHHHH----HHhCC-------EEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHH
Q 023240          142 GDIVLEIGPGTGSLTNVL----LNAGA-------TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~-------~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      +++||=.|+ +|.++..+    ++.|.       +|+.++.+++..+.+...+... .++.++.+|+.+..-....++.+
T Consensus         2 ~k~vlITGa-sggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGA-GKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETT-TSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            346777775 45555444    44587       9999999988777766665443 37889999998754322222222


Q ss_pred             hhhcCCCCceEEEEcC
Q 023240          210 ERRKSSSGFAKVVANI  225 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~  225 (285)
                      .  ...+..|++|.|.
T Consensus        81 ~--~~~g~id~li~~A   94 (244)
T 2bd0_A           81 V--ERYGHIDCLVNNA   94 (244)
T ss_dssp             H--HHTSCCSEEEECC
T ss_pred             H--HhCCCCCEEEEcC
Confidence            2  1235689999874

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=89.57  E-value=1.4  Score=37.36  Aligned_cols=85  Identities=15%  Similarity=0.218  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHH---hCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLN---AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~---~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      .++++|=.|++.|.   ++..+++   .|++|+.++++++..+.+.+.+..   ..++.++.+|+.+..-....++.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            35677877765543   4455566   688999999998887776665543   23688899999875432222222211


Q ss_pred             hcCCCCce--EEEEcC
Q 023240          212 RKSSSGFA--KVVANI  225 (285)
Q Consensus       212 ~~~~~~~D--~Vv~n~  225 (285)
                      ....+.+|  ++|.|.
T Consensus        85 ~~~~g~~d~~~lvnnA  100 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNA  100 (259)
T ss_dssp             SCCCTTCCEEEEEECC
T ss_pred             ccccccCCccEEEECC
Confidence            01234567  888873

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=89.44  E-value=1.3  Score=37.34  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++ |.++..    +++.|++|+.++. +++..+.+.+.+... +++.++.+|+.+..-....++.+.  ..
T Consensus         6 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   82 (261)
T 1gee_A            6 EGKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAI--KE   82 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HH
Confidence            46688877754 555444    4455899999999 877666655555433 368889999887542222222211  12


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|++|.|.
T Consensus        83 ~g~id~li~~A   93 (261)
T 1gee_A           83 FGKLDVMINNA   93 (261)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=89.35  E-value=1.2  Score=37.50  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+++||=.|++ |.++..    +++.|++|+.++.+++..+.+.+.+  ..++.++.+|+.+..-....++.+.+  ..+
T Consensus        11 ~~k~vlVTGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~--~~g   85 (265)
T 2o23_A           11 KGLVAVITGGA-SGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKG--KFG   85 (265)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHH--HCC
Confidence            46789988875 444444    4455899999999877666555444  24789999999875432222222211  224


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        86 ~id~li~~A   94 (265)
T 2o23_A           86 RVDVAVNCA   94 (265)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=89.35  E-value=1  Score=38.30  Aligned_cols=83  Identities=16%  Similarity=0.176  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHH-HHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-VGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~-v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++. ++.+.+.+..  ..++.++.+|+.+..-....++.+.  ..
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   80 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV--RQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHH--Hh
Confidence            35678877765442   334445568999999998776 6555544432  2478889999887543222222221  12


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      .+..|++|.|.
T Consensus        81 ~g~iD~lv~~A   91 (260)
T 1x1t_A           81 MGRIDILVNNA   91 (260)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999884

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.34  E-value=0.54  Score=43.61  Aligned_cols=71  Identities=17%  Similarity=0.286  Sum_probs=49.0

Q ss_pred             CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ..+|+=+|+|  .++..++    ..|..|+.||.+++.++.++..     .+.++.||+.+...       ++. ..-..
T Consensus         4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~-----g~~vi~GDat~~~~-------L~~-agi~~   68 (413)
T 3l9w_A            4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF-----GMKVFYGDATRMDL-------LES-AGAAK   68 (413)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT-----TCCCEESCTTCHHH-------HHH-TTTTT
T ss_pred             CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC-----CCeEEEcCCCCHHH-------HHh-cCCCc
Confidence            3467777775  4444444    3488999999999999988743     57789999988642       211 23356


Q ss_pred             ceEEEEcCCC
Q 023240          218 FAKVVANIPF  227 (285)
Q Consensus       218 ~D~Vv~n~P~  227 (285)
                      .|+||...+-
T Consensus        69 A~~viv~~~~   78 (413)
T 3l9w_A           69 AEVLINAIDD   78 (413)
T ss_dssp             CSEEEECCSS
T ss_pred             cCEEEECCCC
Confidence            7888876654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=89.32  E-value=0.97  Score=38.31  Aligned_cols=85  Identities=12%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGSLTNVLL----NAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~---~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ++++||=.|+ +|.++..++    +.|   .+|+.++.+++..+.+++.....+++.++.+|+.+..-....++.+.+..
T Consensus        20 ~~k~vlITGa-sggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           20 HMNSILITGC-NRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             CCSEEEESCC-SSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            4668888885 455555554    447   89999999876544333332223589999999987653333333222111


Q ss_pred             CCCCceEEEEcCC
Q 023240          214 SSSGFAKVVANIP  226 (285)
Q Consensus       214 ~~~~~D~Vv~n~P  226 (285)
                      .....|++|.|.-
T Consensus        99 g~~~id~li~~Ag  111 (267)
T 1sny_A           99 KDQGLNVLFNNAG  111 (267)
T ss_dssp             GGGCCSEEEECCC
T ss_pred             CCCCccEEEECCC
Confidence            1116899998743

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=89.32  E-value=0.71  Score=39.18  Aligned_cols=81  Identities=15%  Similarity=0.196  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+.  .++.++.+|+.+..-....++.+.  ...+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   81 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELG--AAVRFRNADVTNEADATAALAFAK--QEFGH   81 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888876553   445556669999999999876665554442  478899999987643333333222  12356


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        82 id~lv~nA   89 (257)
T 3tpc_A           82 VHGLVNCA   89 (257)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=89.30  E-value=1.2  Score=38.44  Aligned_cols=77  Identities=19%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++++++..+.+.+.+  .+++.++.+|+.+..-   ...+++   .-+.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~---v~~~~~---~~~~   86 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM--AGQVEVRELDLQDLSS---VRRFAD---GVSG   86 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS--SSEEEEEECCTTCHHH---HHHHHH---TCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--cCCeeEEEcCCCCHHH---HHHHHH---hcCC
Confidence            57788888865443   34445556899999999988777666554  2478999999887542   122222   2257


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        87 iD~lv~nA   94 (291)
T 3rd5_A           87 ADVLINNA   94 (291)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=89.16  E-value=1.3  Score=37.43  Aligned_cols=82  Identities=15%  Similarity=0.130  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+.  +++.++.+|+.+..-....++.+.  ...+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~   79 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYAR--EEFGS   79 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888865442   344455568999999999877666554441  368888999877542222222221  12246


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus        80 iD~lv~nAg   88 (254)
T 1hdc_A           80 VDGLVNNAG   88 (254)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998843

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=89.12  E-value=1.3  Score=38.22  Aligned_cols=83  Identities=12%  Similarity=0.099  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCH-HHHHHHHHHhh-c-CCCeEEEEccccc----ccchhhhhhHHh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ-HMVGLVRERFA-S-IDQLKVLQEDFVK----CHIRSHMLSLFE  210 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~-~~v~~a~~~~~-~-~~~v~~~~gD~~~----~~~~~~~~d~~~  210 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.++ +..+.+.+.+. . ..++.++.+|+.+    ..-....++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            46788888865443   3444555699999999987 66655555443 2 2478999999987    332222222221


Q ss_pred             hhcCCCCceEEEEcC
Q 023240          211 RRKSSSGFAKVVANI  225 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~  225 (285)
                        ...+..|++|.|.
T Consensus       102 --~~~g~iD~lvnnA  114 (288)
T 2x9g_A          102 --RAFGRCDVLVNNA  114 (288)
T ss_dssp             --HHHSCCCEEEECC
T ss_pred             --HhcCCCCEEEECC
Confidence              1235689999874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=89.03  E-value=0.8  Score=40.86  Aligned_cols=49  Identities=31%  Similarity=0.348  Sum_probs=38.6

Q ss_pred             HHHHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~  181 (285)
                      .+....+.++++||-+|+  |.|..+..+++. |++|+++|.+++..+.+++
T Consensus       161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            344456778899999998  577777777764 8899999999888877765

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=88.94  E-value=0.87  Score=38.22  Aligned_cols=83  Identities=14%  Similarity=0.164  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCC-HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~-~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|+ +|.++..+    ++.|.+|+.++.+ ++.++.+.+.+... +++.++.+|+.+..-....++.+.  ..
T Consensus         6 ~~k~vlVTGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   82 (258)
T 3afn_B            6 KGKRVLITGS-SQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFV--AK   82 (258)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HH
Confidence            4678887775 45555544    4458999999998 66555555444332 478899999987543222222221  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|+||.|.-
T Consensus        83 ~g~id~vi~~Ag   94 (258)
T 3afn_B           83 FGGIDVLINNAG   94 (258)
T ss_dssp             HSSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            246899998754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=88.90  E-value=0.83  Score=41.04  Aligned_cols=50  Identities=20%  Similarity=0.219  Sum_probs=39.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      .+....+.++++||-+|+|. |.++..+|+. |++|++++.+++..+.+++.
T Consensus       171 ~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l  222 (360)
T 1piw_A          171 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM  222 (360)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc
Confidence            34446777899999999853 6677777775 88999999999888888763

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.88  E-value=1.2  Score=38.70  Aligned_cols=84  Identities=12%  Similarity=0.081  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC--HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD--QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~--~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+  +...+.+.+..+.. .++.++.+|+.+.......++.+.  ..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~  125 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAR--EA  125 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HH
Confidence            46789999965443   344555669999999987  34444444444433 478899999987643333332222  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|.-
T Consensus       126 ~g~iD~lv~nAg  137 (294)
T 3r3s_A          126 LGGLDILALVAG  137 (294)
T ss_dssp             HTCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            356899998743

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=88.85  E-value=2  Score=36.51  Aligned_cols=82  Identities=15%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+..  ++.++.+|+.+..-....++.+.  ...+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   81 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD--AARYVHLDVTQPAQWKAAVDTAV--TAFGG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG--GEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc--CceEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888865442   3444555689999999998877666555432  57888999877543222222221  12246


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus        82 iD~lv~~Ag   90 (260)
T 1nff_A           82 LHVLVNNAG   90 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998843

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=88.75  E-value=1.4  Score=34.24  Aligned_cols=74  Identities=15%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             CEEEEEcCcccHHHHHHHH----hCCEEEEEeCC-HHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKD-QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~----~~~~V~giD~~-~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      .+|+=+|+  |..+..+++    .|.+|+.+|.+ ++.++.+.....  .++.++.||+.+...       ++. ..-..
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~--~~~~~i~gd~~~~~~-------l~~-a~i~~   71 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSV-------LKK-AGIDR   71 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHH-------HHH-HTTTT
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc--CCCeEEEcCCCCHHH-------HHH-cChhh
Confidence            45777775  666665544    47899999997 565555554332  368899999876432       111 12356


Q ss_pred             ceEEEEcCCCC
Q 023240          218 FAKVVANIPFN  228 (285)
Q Consensus       218 ~D~Vv~n~P~~  228 (285)
                      .|.||.-.+..
T Consensus        72 ad~vi~~~~~d   82 (153)
T 1id1_A           72 CRAILALSDND   82 (153)
T ss_dssp             CSEEEECSSCH
T ss_pred             CCEEEEecCCh
Confidence            78888866543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=88.72  E-value=1.1  Score=39.90  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=57.1

Q ss_pred             HHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +...+.++++||=+|+  |.|..+..+++. |++|+++ .+++..+.+++.    + ...+. +  +..+.    +.+..
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----G-a~~i~-~--~~~~~----~~~~~  210 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----G-ATPID-A--SREPE----DYAAE  210 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----T-SEEEE-T--TSCHH----HHHHH
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----C-CCEec-c--CCCHH----HHHHH
Confidence            4456678999999994  567788888776 8899999 888888887654    2 22222 1  11111    11111


Q ss_pred             hcCCCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      ......+|+||-+..-......+..+.++|.
T Consensus       211 ~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~  241 (343)
T 3gaz_A          211 HTAGQGFDLVYDTLGGPVLDASFSAVKRFGH  241 (343)
T ss_dssp             HHTTSCEEEEEESSCTHHHHHHHHHEEEEEE
T ss_pred             HhcCCCceEEEECCCcHHHHHHHHHHhcCCe
Confidence            1344568999887553323344444444443

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=88.67  E-value=1.4  Score=39.19  Aligned_cols=49  Identities=22%  Similarity=0.347  Sum_probs=39.2

Q ss_pred             HHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~  181 (285)
                      .+....+.++++||-+|+| .|..+..+++. |++|++++.+++..+.+++
T Consensus       156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            3444567789999999986 47777777765 8899999999999888875

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=88.65  E-value=1.8  Score=38.97  Aligned_cols=97  Identities=12%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             HHHHhcCC-CCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          133 LAAAAAVQ-EGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       133 l~~~l~~~-~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      .+...... ++++||=+|+|. |..+..+++. |++|++++.+++..+.+++.+   +.-.++.  ..+.       +.+
T Consensus       178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l---Ga~~v~~--~~~~-------~~~  245 (366)
T 1yqd_A          178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF---GADSFLV--SRDQ-------EQM  245 (366)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS---CCSEEEE--TTCH-------HHH
T ss_pred             HHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---CCceEEe--ccCH-------HHH
Confidence            34455666 789999999753 5556666665 889999999998887776544   2112222  1111       112


Q ss_pred             hhhcCCCCceEEEEcCCCC-CcHHHHHHhccCCCc
Q 023240          210 ERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDI  243 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~-~~~~i~~~l~~~g~~  243 (285)
                      ..  ..+.+|+||-+.... .....++.+.++|.+
T Consensus       246 ~~--~~~~~D~vid~~g~~~~~~~~~~~l~~~G~i  278 (366)
T 1yqd_A          246 QA--AAGTLDGIIDTVSAVHPLLPLFGLLKSHGKL  278 (366)
T ss_dssp             HH--TTTCEEEEEECCSSCCCSHHHHHHEEEEEEE
T ss_pred             HH--hhCCCCEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            11  124689999876543 345666666555443

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=88.57  E-value=1.8  Score=36.91  Aligned_cols=83  Identities=12%  Similarity=0.067  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEe-CCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD-~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++ .+.+..+......... .++.++.+|+.+..-....++.+.+  ..
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~  101 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLA--DF  101 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH--Hc
Confidence            46678877765442   3444555689999999 5666555555444433 4899999999876533333332221  22


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus       102 g~id~li~nA  111 (269)
T 3gk3_A          102 GKVDVLINNA  111 (269)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=88.56  E-value=2  Score=36.10  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++|=.|++.|.   ++..+++.|++|+.++. +++..+.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   81 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVV--SQFG   81 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            5677777755432   34445556899999887 556666655555443 478899999987643332222222  1235


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        82 ~id~lv~nA   90 (246)
T 3osu_A           82 SLDVLVNNA   90 (246)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=88.54  E-value=0.78  Score=40.53  Aligned_cols=84  Identities=14%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC----------HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD----------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~----------~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~  206 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.+|.+          .+..+.+...+... +++.++.+|+.+..-....+
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~  105 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLI  105 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            57788888876443   445556669999999987          55566555555433 47888899988765333333


Q ss_pred             hHHhhhcCCCCceEEEEcCC
Q 023240          207 SLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      +.+.  ...+..|++|.|.-
T Consensus       106 ~~~~--~~~g~iD~lv~nAg  123 (322)
T 3qlj_A          106 QTAV--ETFGGLDVLVNNAG  123 (322)
T ss_dssp             HHHH--HHHSCCCEEECCCC
T ss_pred             HHHH--HHcCCCCEEEECCC
Confidence            3222  12356899998743

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=88.51  E-value=1.8  Score=36.51  Aligned_cols=83  Identities=19%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC--------CCeEEEEcccccccchhhhhhH
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI--------DQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~--------~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      .+++||=.|++. .++.    .+++.|++|+.++.+++..+.+.+.+...        .++.++.+|+.+..-....++-
T Consensus         6 ~~k~vlITGasg-giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            6 RSALALVTGAGS-GIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            456888888654 4444    44556899999999988776655544321        3688899998875432222222


Q ss_pred             HhhhcCCCCc-eEEEEcCC
Q 023240          209 FERRKSSSGF-AKVVANIP  226 (285)
Q Consensus       209 ~~~~~~~~~~-D~Vv~n~P  226 (285)
                      +.+  ..+.. |+||.|.-
T Consensus        85 ~~~--~~g~i~d~vi~~Ag  101 (264)
T 2pd6_A           85 VQA--CFSRPPSVVVSCAG  101 (264)
T ss_dssp             HHH--HHSSCCSEEEECCC
T ss_pred             HHH--HhCCCCeEEEECCC
Confidence            211  12345 99998743

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=88.35  E-value=1.8  Score=36.65  Aligned_cols=83  Identities=17%  Similarity=0.147  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|+ +|.++..+    ++.|++|+.++. +++..+...+.+... .++.++.+|+.+.......++-+.  ..
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   96 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAV--SH   96 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HH
Confidence            4678887775 45555544    445899999998 777766655555433 478899999887542222222111  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|..
T Consensus        97 ~~~~d~vi~~Ag  108 (274)
T 1ja9_A           97 FGGLDFVMSNSG  108 (274)
T ss_dssp             HSCEEEEECCCC
T ss_pred             cCCCCEEEECCC
Confidence            246899998753

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=88.25  E-value=1.1  Score=40.49  Aligned_cols=89  Identities=17%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             CCEEEEEcCcccHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          142 GDIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~---~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ..+||=+||  |..+..+++   ...+|+..|++.+.++.++.      .+..+..|+.+..-   ..+++      ...
T Consensus        16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~------~~~~~~~d~~d~~~---l~~~~------~~~   78 (365)
T 3abi_A           16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE------FATPLKVDASNFDK---LVEVM------KEF   78 (365)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT------TSEEEECCTTCHHH---HHHHH------TTC
T ss_pred             ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc------cCCcEEEecCCHHH---HHHHH------hCC
Confidence            458999998  555555544   36789999999888776643      35566777765421   11222      457


Q ss_pred             eEEEEcCCCCCcHHHHHHhccCCCceeee
Q 023240          219 AKVVANIPFNISTDVIKQLLPMGDIFSEV  247 (285)
Q Consensus       219 D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~  247 (285)
                      |+||+-.|+....++.+..+..|..+..+
T Consensus        79 DvVi~~~p~~~~~~v~~~~~~~g~~yvD~  107 (365)
T 3abi_A           79 ELVIGALPGFLGFKSIKAAIKSKVDMVDV  107 (365)
T ss_dssp             SEEEECCCGGGHHHHHHHHHHHTCEEEEC
T ss_pred             CEEEEecCCcccchHHHHHHhcCcceEee
Confidence            99998877777778888877776665443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=88.17  E-value=1.9  Score=36.83  Aligned_cols=83  Identities=16%  Similarity=0.172  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .++++|=.|++.|.   ++..+++.|++|+.++. +++..+.+.+.++.. +++.++.+|+.+..-....++.+.  ...
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   94 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAV--AHF   94 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            46788988876543   44555666999998876 455566555555443 478999999987653333332222  123


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        95 g~id~lvnnA  104 (270)
T 3is3_A           95 GHLDIAVSNS  104 (270)
T ss_dssp             SCCCEEECCC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=88.15  E-value=1.5  Score=36.52  Aligned_cols=83  Identities=17%  Similarity=0.159  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCEEEEE-eCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~gi-D~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      .+++||=.|++ |.++.    .+++.|++|+.+ +.++...+...+.+... +++.++.+|+.+..-....++.+.  ..
T Consensus         4 ~~~~vlItGas-ggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   80 (247)
T 2hq1_A            4 KGKTAIVTGSS-RGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAM--DA   80 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHH--HH
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--Hh
Confidence            35678877854 44444    445558999999 56666555555444432 478999999987543222222221  12


Q ss_pred             CCCceEEEEcCC
Q 023240          215 SSGFAKVVANIP  226 (285)
Q Consensus       215 ~~~~D~Vv~n~P  226 (285)
                      .+..|++|.|.-
T Consensus        81 ~~~~d~vi~~Ag   92 (247)
T 2hq1_A           81 FGRIDILVNNAG   92 (247)
T ss_dssp             HSCCCEEEECC-
T ss_pred             cCCCCEEEECCC
Confidence            246899998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	4e-30
d1zq9a1	278	c.66.1.24 (A:36-313) Probable dimethyladenosine tr	5e-18
d1qyra_	252	c.66.1.24 (A:) High level kasugamycin resistance p	2e-16
d1yuba_	245	c.66.1.24 (A:) rRNA adenine dimethylase {Streptoco	4e-14
d1qama_	235	c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus	1e-11
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	6e-08
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	1e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	5e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	5e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	4e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	6e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	7e-04
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.001
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.001
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.003

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 4e-30
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 25/189 (13%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNAGAT--V 166
            +   G  Y+ N  + +++     +       E   VL++ PG G  + +  N       
Sbjct: 11  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 70

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA------- 219
             +EK   +   +  +F     L++L+ D       S+++            +       
Sbjct: 71  SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 129

Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
             VAN+    S  +I Q L               +++L +   TA +L+           
Sbjct: 130 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 188

Query: 272 INIFVNFYS 280
            ++    ++
Sbjct: 189 CSVVREAFT 197

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 5e-18
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 17/141 (12%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           QH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +V  + 
Sbjct: 1   QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELH 60

Query: 181 ERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
           +R        +L+VL  D +K  +                    VAN+P+ IS+  + +L
Sbjct: 61  KRVQGTPVASKLQVLVGDVLKTDLPFFD--------------TCVANLPYQISSPFVFKL 106

Query: 238 LPMGDIFSEVVLLLQEETALR 258
           L     F   +L+ Q E ALR
Sbjct: 107 LLHRPFFRCAILMFQREFALR 127

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

 Score = 74.6 bits (182), Expect = 2e-16
 Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D +  +       + +         +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQP-------LRVFGNLPYNISTPLMFHLFSY 113

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFC 284
            D  +++  +LQ+E     +     +  Y  +++   +Y     
Sbjct: 114 TDAIADMHFMLQKEVV-NRLVAGPNSKAYGRLSVMAQYYCNVIP 156

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

 Score = 68.4 bits (166), Expect = 4e-14
 Identities = 21/91 (23%), Positives = 42/91 (46%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205
           +  L  E+     ++ ++ +D ++    +  
Sbjct: 63  LFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Length = 235

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

 Score = 61.0 bits (147), Expect = 1e-11
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +    D++     + E D + EIG G G  T  L+     V AIE D  +     
Sbjct: 1   QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHM 205
            +    D  +VL +D ++     + 
Sbjct: 61  NKLVDHDNFQVLNKDILQFKFPKNQ 85

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.4 bits (117), Expect = 6e-08
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 5/148 (3%)

Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
           E+   +   A   + D+ +++G GTG +T  L      V AI+++   +           
Sbjct: 20  EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79

Query: 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
                  D V         +L +                  I   +  +L P G I    
Sbjct: 80  -----LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA 134

Query: 248 VLLLQEETALRLVEPSLRTSEYRPINIF 275
           +LL  +  A+  +           +NI 
Sbjct: 135 ILLETKFEAMECLRDLGFDVNITELNIA 162

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           +L   AA++  + VL++  G G + N        V+A +  + ++
Sbjct: 6   KLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDIL 50

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           H+ L       +   A  +    VL+IG G G             + ++  + M
Sbjct: 2   HHSL-----GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM 50

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 12/152 (7%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFA--- 184
           + + +   +  GD VLE G G+G ++  L  A      V++ E  +    L ++ +    
Sbjct: 88  NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147

Query: 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI--PFNISTDVIKQLLPMGD 242
              +L  ++E           +S       S  F  V  ++  P          L   G 
Sbjct: 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 207

Query: 243 IFSEVVLLLQEETALRLVEPSLRTSEYRPINI 274
                V ++     + L++  +RT E      
Sbjct: 208 C---AVYVVNITQVIELLD-GIRTCELALSCE 235

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEK 171
            G H  ML  E+      + +     + +  +VL++G GTG L      AGA  V+ IE 
Sbjct: 5   FGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEC 64

Query: 172 DQHM 175
               
Sbjct: 65  SSIS 68

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
            G H  ML  +I      D +     + +  +VL++G GTG L+     AGA  VL +++
Sbjct: 7   YGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQ 66

Query: 172 DQHMV 176
            + + 
Sbjct: 67  SEILY 71

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
            +     ++ G  +LE+G G+G++++ +   LN   T+  +E+D+  +    +  +
Sbjct: 76  YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 113 RFPRKSLGQHYMLN---SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLA 168
           R    S  +H + N    E    L     ++ G  +L++G G+G +      + G T   
Sbjct: 2   RIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61

Query: 169 IEKDQHMVGLVRERF 183
           I+         + R 
Sbjct: 62  IDMSSLFTAQAKRRA 76

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 127 SEINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
           SE+N  L     +  V  G  VL    G     + L   G  V+  E  +  V       
Sbjct: 3   SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTER 62

Query: 184 ASIDQLKVLQEDFVKCHIRSHML 206
                +    +  V       + 
Sbjct: 63  GEQPHITSQGDFKVYAAPGIEIW 85

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
            G H  ML   +      + +     + +  IVL++G GTG L+      GA  V+ ++ 
Sbjct: 10  YGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM 69

Query: 172 DQHM 175
              +
Sbjct: 70  SSII 73

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 11/144 (7%)

Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
           +G      +E    L           VL++  GTG  + +L+  G +V +++    M+  
Sbjct: 34  IGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93

Query: 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238
             +   +    +  +  F K  I        ++   +      V         +    L 
Sbjct: 94  ALKERWN----RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI-----CLGNSFAHLP 144

Query: 239 PMGDIFSEVVLLLQEETALRLVEP 262
                 SE  L L+      +V P
Sbjct: 145 DSKGDQSEHRLALKN--IASMVRP 166

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
               +LE+G   G  T+ L      +  +E  +  
Sbjct: 20  RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 54

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 132 QLAAAAA------VQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERF 183
           +LAA         ++  + VL +G  +G+  + L  +     + A+E        + E  
Sbjct: 41  KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100

Query: 184 ASIDQLKVLQEDFVKCH 200
              + +  L  D  K  
Sbjct: 101 RERNNIIPLLFDASKPW 117

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERF 183
            + GD VL++G G G        AG      ++  +  +   R R 
Sbjct: 22  TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	99.91
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.9
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.89
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.88
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	99.8
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.67
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.67
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.66
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.65
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.63
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.62
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.6
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.59
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.59
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.58
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.56
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.48
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.46
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.45
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.44
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.44
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.44
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.43
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.43
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.42
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.42
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.41
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.39
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.37
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.36
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.36
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.36
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.34
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.34
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.34
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.31
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.31
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.3
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.3
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.3
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.29
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.29
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.27
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.27
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.27
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.25
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.25
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.25
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.24
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.21
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.19
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.18
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.18
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.17
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.17
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.17
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.17
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.16
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.13
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.12
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.12
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.11
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.07
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.07
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.07
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.06
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.04
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.03
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.03
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.0
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.99
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.98
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.95
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.94
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.87
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.82
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.73
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.72
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.49
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.45
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.29
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.21
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.19
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.17
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.13
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.03
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.98
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.94
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.89
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.86
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.84
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.83
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.8
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.76
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.71
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.53
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.44
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.43
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.43
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.41
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.36
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.29
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.23
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.1
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.05
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.8
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.14
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.12
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.09
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.02
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.87
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.81
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.76
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.68
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.68
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.62
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.5
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.42
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.41
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.28
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.24
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.19
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.1
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.98
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.71
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.69
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.6
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.54
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.49
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.37
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.33
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.25
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.22
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.11
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.1
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.07
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.03
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.99
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.94
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.82
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.78
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.72
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.72
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.62
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.62
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.52
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.38
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.35
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.27
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.24
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.23
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.04
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.95
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.93
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.86
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.82
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.8
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.78
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	92.73
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.63
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.47
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.3
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.28
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.02
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.0
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	91.81
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.78
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.37
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.26
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.25
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.24
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.24
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.79
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.56
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	90.43
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.26
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.15
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.03
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.88
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.7
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	89.52
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.41
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.82
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.73
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	88.32
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	88.06
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	87.95
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.78
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.34
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	87.27
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	87.03
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.07
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.18
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	84.91
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	83.73
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	83.45
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.22
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	83.15
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	83.04
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.76
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	82.5
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.38

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.3e-24  Score=188.21  Aligned_cols=155  Identities=23%  Similarity=0.385  Sum_probs=139.3

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc
Q 023240          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (285)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~  200 (285)
                      |||+.++.+++.+++.+.+.+++.|||||||+|.+|..|++.+.+|++||+|+.+++.+++.....++++++++|+.+++
T Consensus         1 QnFL~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~   80 (252)
T d1qyra_           1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN   80 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred             CCccCCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence            68999999999999999999999999999999999999999999999999999999999987765579999999999987


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHHHHHHHhh
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS  280 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~~~~~~f~  280 (285)
                      +.+..       ...+....|++|+||+++++++.+++.....+..+.+|+|+++++|++ +.|+++.|+++++++++||
T Consensus        81 ~~~~~-------~~~~~~~~vvgNlPY~Iss~Il~~l~~~~~~~~~~~~m~QkEvA~Ri~-A~~gsk~yg~Lsv~~q~~~  152 (252)
T d1qyra_          81 FGELA-------EKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYC  152 (252)
T ss_dssp             HHHHH-------HHHTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHH-CCTTSTTCSHHHHHHHHHE
T ss_pred             ccccc-------cccCCCeEEEecchHHHHHHHHHHhcccccceehhhhhhhHHHHHHhc-cCCCChhhhHHHhhhhhcc
Confidence            54321       112345689999999999999999988888889999999999999999 9999999999999999999


Q ss_pred             ccc
Q 023240          281 GQF  283 (285)
Q Consensus       281 ~~~  283 (285)
                      ++.
T Consensus       153 ~~~  155 (252)
T d1qyra_         153 NVI  155 (252)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            874

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.4e-24  Score=186.86  Aligned_cols=149  Identities=33%  Similarity=0.476  Sum_probs=137.9

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccc
Q 023240          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (285)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~  197 (285)
                      |||+.++.+++.+++.+.+.+++.|||||+|.|.+|..|++.+.+|++||+|+.+++.+++.+...   ++++++.+|+.
T Consensus         1 QnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l   80 (278)
T d1zq9a1           1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   80 (278)
T ss_dssp             CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             CCCcCCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHh
Confidence            689999999999999999999999999999999999999999999999999999999999988754   48999999999


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHHHHHH
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVN  277 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~~~~~  277 (285)
                      +.++              +.++.||+|+||+++++++.+++.....+..+++|+|+++++|++ +.|+++.|+++++++|
T Consensus        81 ~~~~--------------~~~~~vV~NLPY~Iss~il~~~~~~~~~~~~~v~m~QkEvA~Rl~-A~p~~k~yg~LSv~~q  145 (278)
T d1zq9a1          81 KTDL--------------PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV-AKPGDKLYCRLSINTQ  145 (278)
T ss_dssp             TSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHH-CCTTCTTCSHHHHHHH
T ss_pred             hhhh--------------hhhhhhhcchHHHHHHHHHHHHHhhCCccceeeEeecHHHHHHHh-hhhccchhhhhhhhee
Confidence            8753              345789999999999999999988888889999999999999999 9999999999999999


Q ss_pred             Hhhcccc
Q 023240          278 FYSGQFC  284 (285)
Q Consensus       278 ~f~~~~~  284 (285)
                      +||++.+
T Consensus       146 ~~~~v~~  152 (278)
T d1zq9a1         146 LLARVDH  152 (278)
T ss_dssp             HHEEEEE
T ss_pred             ecceeeE
Confidence            9999754

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.89  E-value=6.6e-23  Score=177.31  Aligned_cols=145  Identities=26%  Similarity=0.414  Sum_probs=129.4

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc
Q 023240          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (285)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~  200 (285)
                      |||+.++.+++.+++.+.+.++++|||||||+|.+|..+++.+.+|++||+|+.+++.+++++...++++++++|+.+++
T Consensus         1 QnFL~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~   80 (235)
T d1qama_           1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK   80 (235)
T ss_dssp             CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC
T ss_pred             CCCcCCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999887789999999999987


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHHHHHHHhh
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS  280 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~~~~~~f~  280 (285)
                      +            .......||+|+||+++++++.+++.. ..+..+++++|+++++|++ +.     ++.+++++++||
T Consensus        81 ~------------~~~~~~~vv~NLPYnIss~il~~ll~~-~~~~~~vlm~QkEvA~Ri~-a~-----~~~lsv~~~~~~  141 (235)
T d1qama_          81 F------------PKNQSYKIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLL-NT-----KRSLALFLMAEV  141 (235)
T ss_dssp             C------------CSSCCCEEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHT-CT-----TSHHHHHHTTTE
T ss_pred             c------------cccccceeeeeehhhhhHHHHHHHHhh-hhhhhhhhhhhHHHHHhhh-cc-----cccceEEEeecc
Confidence            4            223456899999999999999998854 4678899999999999999 44     356999999998


Q ss_pred             cccc
Q 023240          281 GQFC  284 (285)
Q Consensus       281 ~~~~  284 (285)
                      ++.+
T Consensus       142 ~~~~  145 (235)
T d1qama_         142 DISI  145 (235)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8743

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.88  E-value=1.8e-24  Score=188.25  Aligned_cols=151  Identities=23%  Similarity=0.385  Sum_probs=135.3

Q ss_pred             CccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEc
Q 023240          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQE  194 (285)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~g  194 (285)
                      .++.|||||+.++.+++.+++.+.+.++++|||||||+|.+|..|++.+.+|++||+|+.+++.+++++...++++++++
T Consensus         3 ~~~k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~   82 (245)
T d1yuba_           3 KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQ   82 (245)
T ss_dssp             CCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCS
T ss_pred             CCCCCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhh
Confidence            45679999999999999999999999999999999999999999999999999999999999999988876679999999


Q ss_pred             ccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHHH
Q 023240          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINI  274 (285)
Q Consensus       195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~~  274 (285)
                      |++++++            +...++.||+|+||+++++++.+++.. ..+..+++++|+++++|++      +.|+++++
T Consensus        83 D~l~~~~------------~~~~~~~vv~NLPY~Ist~il~~~l~~-~~~~~~v~m~QkEva~r~~------~~~~~lsv  143 (245)
T d1yuba_          83 DILQFQF------------PNKQRYKIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTL------DIHRTLGL  143 (245)
T ss_dssp             CCTTTTC------------CCSSEEEEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHH------CGGGSHHH
T ss_pred             hhhcccc------------ccceeeeEeeeeehhhhHHHHHHHhhh-chhhhhhhhhhhhHHhhhh------hhhhhhhh
Confidence            9999874            345678899999999999999888754 4567889999999999988      35899999


Q ss_pred             HHHHhhcccc
Q 023240          275 FVNFYSGQFC  284 (285)
Q Consensus       275 ~~~~f~~~~~  284 (285)
                      ++|+||++.+
T Consensus       144 ~~q~~~~~~~  153 (245)
T d1yuba_         144 LLHTQVSIQQ  153 (245)
T ss_dssp             HTTTTBCCCE
T ss_pred             hhhhcceeee
Confidence            9999998743

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.2e-19  Score=161.88  Aligned_cols=166  Identities=17%  Similarity=0.203  Sum_probs=133.4

Q ss_pred             CCCccccCCcccCCHHHHHHHHHHhcCC------CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhh
Q 023240          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA  184 (285)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~  184 (285)
                      ...++.|||||+.++.++..+++.+.+.      .+..|||||+|.|.+|..+... + .+|++||.|+.+++.+++.+.
T Consensus         9 ~k~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_           9 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred             hhhhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence            4567889999999999999999998754      3568999999999999999876 3 489999999999999998875


Q ss_pred             cCCCeEEEEcccccccchhhhhhHHhhh----c------CCCCceEEEEcCCCCCcHHHHHHhccC----C----Cceee
Q 023240          185 SIDQLKVLQEDFVKCHIRSHMLSLFERR----K------SSSGFAKVVANIPFNISTDVIKQLLPM----G----DIFSE  246 (285)
Q Consensus       185 ~~~~v~~~~gD~~~~~~~~~~~d~~~~~----~------~~~~~D~Vv~n~P~~~~~~i~~~l~~~----g----~~~~~  246 (285)
                      . ++++++++|+..+....   ++++..    .      .....-.||+|+||+..++++.+++..    .    .-+.+
T Consensus        89 ~-~~~~ii~~D~l~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~vvaNLPy~iss~il~~~l~~~~~~~~l~~~g~~~  164 (322)
T d1i4wa_          89 G-SPLQILKRDPYDWSTYS---NLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVK  164 (322)
T ss_dssp             T-SSCEEECSCTTCHHHHH---HHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEE
T ss_pred             C-CCcEEEeCchhhcchhh---hhhhcccccccccccccccCCceEEEEeCCchhhHHHHHHHHHhccccccccccccce
Confidence            3 68999999998774321   222110    0      001123589999999999999876641    1    11358


Q ss_pred             eEeeehHhHHHHhcCCCCCCCCchhHHHHHHHhhccc
Q 023240          247 VVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQF  283 (285)
Q Consensus       247 ~~~~~~~~~~~rl~~~~~~~~~y~~l~~~~~~f~~~~  283 (285)
                      +++++|+++++||+ +.|+.+.|+++|+++|+||++.
T Consensus       165 ~vlm~QkEvA~Rl~-A~pg~k~y~~lSV~~q~~~~~~  200 (322)
T d1i4wa_         165 MLLWMPSTTARKLL-ARPGMHSRSKCSVVREAFTDTK  200 (322)
T ss_dssp             EEEEEEHHHHHHHH-CCTTSTTCCHHHHHHHHHEEEE
T ss_pred             EEEEEeHHHHHHHh-cCCCCccccHHHHHHHHHhcee
Confidence            89999999999999 9999999999999999999974

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.2e-16  Score=133.92  Aligned_cols=147  Identities=14%  Similarity=0.181  Sum_probs=115.2

Q ss_pred             HHHHHHHHHhcCCC-chHHHHHHHHhCCC---CCcc---------ccCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcC
Q 023240           86 AASACIVCARSQDD-DYHATIKALNSKGR---FPRK---------SLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGP  150 (285)
Q Consensus        86 ~r~~mv~~q~~~~~-~~~~~~~~~~~~~~---~~~~---------~~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGc  150 (285)
                      .++.||+++.+... ....+.+.+...+.   -+..         .+++ ++..|.+...|++.+  .++++.+||||||
T Consensus         7 ~~~~mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~~aY~D~~l~i~~~~-~is~P~~~a~~le~L~~~l~~g~~VLdiG~   85 (224)
T d1i1na_           7 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQA-TISAPHMHAYALELLFDQLHEGAKALDVGS   85 (224)
T ss_dssp             SHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEETTE-EECCHHHHHHHHHHTTTTSCTTCEEEEETC
T ss_pred             cHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcccCCCCCccccchh-hhhhhHHHHHHHHHHhhccCCCCeEEEecC
Confidence            36889999988875 56677777655321   1111         1244 888899999999998  6788999999999


Q ss_pred             cccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          151 GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       151 G~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~-------~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      |+|+.+..||+.   .++|+++|+++++++.|++++++.       +++.++.+|+.+...            +...||.
T Consensus        86 GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~------------~~~~fD~  153 (224)
T d1i1na_          86 GSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------------EEAPYDA  153 (224)
T ss_dssp             TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------------GGCCEEE
T ss_pred             CCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc------------hhhhhhh
Confidence            999999999986   469999999999999999998642       478999999988763            4468999


Q ss_pred             EEEcC-CCCCcHHHHHHhccCCCcee
Q 023240          221 VVANI-PFNISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       221 Vv~n~-P~~~~~~i~~~l~~~g~~~~  245 (285)
                      |+.+. +.+.+..++++|.++|.++.
T Consensus       154 I~~~~~~~~ip~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         154 IHVGAAAPVVPQALIDQLKPGGRLIL  179 (224)
T ss_dssp             EEECSBBSSCCHHHHHTEEEEEEEEE
T ss_pred             hhhhcchhhcCHHHHhhcCCCcEEEE
Confidence            99873 34567788888888777663

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.67  E-value=6.4e-16  Score=131.16  Aligned_cols=148  Identities=16%  Similarity=0.201  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhcCCC-chHHHHHHHHhCC---CCCcc-------------ccCCcccCCHHHHHHHHHHhcCCCCCEEEE
Q 023240           85 GAASACIVCARSQDD-DYHATIKALNSKG---RFPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (285)
Q Consensus        85 ~~r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~~-------------~~g~~~~~~~~~~~~l~~~l~~~~~~~VLD  147 (285)
                      ..+..|++++.+... ....+.+++...+   +-+..             ..|+ ++..|.+...|++.++++++++|||
T Consensus         6 e~~~~lv~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~-~is~P~~~a~ml~~L~l~~g~~VLe   84 (215)
T d1jg1a_           6 EKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQ-TVSAPHMVAIMLEIANLKPGMNILE   84 (215)
T ss_dssp             HHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTC-EECCHHHHHHHHHHHTCCTTCCEEE
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhh-hhhhhhhHHHHHHhhccCccceEEE
Confidence            456778887777664 5666777665532   11111             1244 8899999999999999999999999


Q ss_pred             EcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240          148 IGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       148 iGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                      ||||+||.+..++.. +.+|++||+++++++.|+++++..  .|+.++++|+.+..            ....+||.|+.+
T Consensus        85 IGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~------------~~~~pfD~Iiv~  152 (215)
T d1jg1a_          85 VGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF------------PPKAPYDVIIVT  152 (215)
T ss_dssp             ECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC------------GGGCCEEEEEEC
T ss_pred             ecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC------------cccCcceeEEee
Confidence            999999999999987 778999999999999999999866  49999999998864            345789999886


Q ss_pred             C-CCCCcHHHHHHhccCCCcee
Q 023240          225 I-PFNISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       225 ~-P~~~~~~i~~~l~~~g~~~~  245 (285)
                      . ....+..++++|.++|.++.
T Consensus       153 ~a~~~ip~~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         153 AGAPKIPEPLIEQLKIGGKLII  174 (215)
T ss_dssp             SBBSSCCHHHHHTEEEEEEEEE
T ss_pred             cccccCCHHHHHhcCCCCEEEE
Confidence            3 34677888999988877663

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.66  E-value=5.1e-16  Score=129.95  Aligned_cols=97  Identities=18%  Similarity=0.241  Sum_probs=75.7

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCe
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQL  189 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v  189 (285)
                      .++.+++| |.|+++++..++..+..   -.|++|||+|||+|.+++.++..| .+|+|+|+|+.+++.|++|..   ++
T Consensus        19 ~~~~~leQ-y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~---~~   94 (197)
T d1ne2a_          19 NFKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GV   94 (197)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TS
T ss_pred             CCCccccc-CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc---cc
Confidence            56667888 99999999887655433   368899999999999999888886 479999999999999999974   78


Q ss_pred             EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +++++|+.+++               +.||+||+||||..
T Consensus        95 ~~~~~D~~~l~---------------~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          95 NFMVADVSEIS---------------GKYDTWIMNPPFGS  119 (197)
T ss_dssp             EEEECCGGGCC---------------CCEEEEEECCCC--
T ss_pred             cEEEEehhhcC---------------CcceEEEeCcccch
Confidence            99999997753               67999999999953

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=5.5e-16  Score=130.30  Aligned_cols=101  Identities=30%  Similarity=0.409  Sum_probs=85.2

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-C
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q  188 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~  188 (285)
                      .++.+++| |.|++.++..++....   ...|.+|||+|||+|.+++.++..|+ +|+|+|+|+.+++.|++|++.++ +
T Consensus        17 ~~~~~l~q-y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~   95 (201)
T d1wy7a1          17 NPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   95 (201)
T ss_dssp             SCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             CCCccccc-CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC
Confidence            57788999 9999999887765432   23678999999999999999888874 89999999999999999988765 7


Q ss_pred             eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       189 v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                      .+++.+|+.+++               .+||+||+||||...
T Consensus        96 ~~~~~~d~~~~~---------------~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          96 FKVFIGDVSEFN---------------SRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             EEEEESCGGGCC---------------CCCSEEEECCCCSSS
T ss_pred             ceEEECchhhhC---------------CcCcEEEEcCccccc
Confidence            899999987753               569999999999643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.63  E-value=9.2e-16  Score=127.08  Aligned_cols=100  Identities=15%  Similarity=0.199  Sum_probs=89.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~  200 (285)
                      .+.+++...++..+.+.++++|||+|||+|.+++.+|+.+.+|+|+|+++++++.|++|++.+   ++++++++|+.+..
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence            678899999999999999999999999999999999988889999999999999999999876   38999999998875


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~  235 (285)
                                  .....||.|+++.+.....++++
T Consensus        96 ------------~~~~~~D~v~~~~~~~~~~~~~~  118 (186)
T d1l3ia_          96 ------------CKIPDIDIAVVGGSGGELQEILR  118 (186)
T ss_dssp             ------------TTSCCEEEEEESCCTTCHHHHHH
T ss_pred             ------------cccCCcCEEEEeCccccchHHHH
Confidence                        34578999999998877766654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.62  E-value=1.1e-15  Score=130.45  Aligned_cols=111  Identities=17%  Similarity=0.213  Sum_probs=96.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (285)
                      .++.+.+...|++.+.++++++|||||||+|++|..|++.+.+|+++|+++++++.|++++...+|++++++|+....  
T Consensus        52 ~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~--  129 (224)
T d1vbfa_          52 NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY--  129 (224)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC--
T ss_pred             ceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcc--
Confidence            678899999999999999999999999999999999999999999999999999999999888789999999987754  


Q ss_pred             hhhhhHHhhhcCCCCceEEEEc-CCCCCcHHHHHHhccCCCcee
Q 023240          203 SHMLSLFERRKSSSGFAKVVAN-IPFNISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n-~P~~~~~~i~~~l~~~g~~~~  245 (285)
                                ...++||.|+.+ ..-+.+..++++|.++|.++.
T Consensus       130 ----------~~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         130 ----------EEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMIL  163 (224)
T ss_dssp             ----------GGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEE
T ss_pred             ----------hhhhhHHHHHhhcchhhhhHHHHHhcCCCCEEEE
Confidence                      234779999886 334667778888888777653

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=3.1e-15  Score=126.69  Aligned_cols=111  Identities=15%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~  197 (285)
                      +++.|.++..+++.+.++++++|||||||+|+++..+|+.   .++|+++|+++++++.|+++++..  .|+.++++|+.
T Consensus        57 ~i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~  136 (213)
T d1dl5a1          57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY  136 (213)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             eeccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchH
Confidence            5777999999999999999999999999999999999986   468999999999999999999865  48999999998


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCC-CCCcHHHHHHhccCCCcee
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIP-FNISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P-~~~~~~i~~~l~~~g~~~~  245 (285)
                      +...            ..++||+|+++.. .+.+..++++|.++|.++.
T Consensus       137 ~~~~------------~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         137 YGVP------------EFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIV  173 (213)
T ss_dssp             GCCG------------GGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEE
T ss_pred             Hccc------------cccchhhhhhhccHHHhHHHHHHhcCCCcEEEE
Confidence            8653            3467999998754 4556778888887776653

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.59  E-value=3.5e-15  Score=127.37  Aligned_cols=90  Identities=12%  Similarity=0.167  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (285)
                      +.....|++.++++++.+|||||||+|.++..+++.+.+|+|||+|+.|++.|++++...  +++.++++|+.++++   
T Consensus         2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~---   78 (234)
T d1xxla_           2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF---   78 (234)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS---
T ss_pred             chHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccc---
Confidence            456778999999999999999999999999999999999999999999999999987653  589999999999885   


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                               +.++||+|++.-.++
T Consensus        79 ---------~~~~fD~v~~~~~l~   93 (234)
T d1xxla_          79 ---------PDDSFDIITCRYAAH   93 (234)
T ss_dssp             ---------CTTCEEEEEEESCGG
T ss_pred             ---------cccccceeeeeceee
Confidence                     347899999976654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=1.3e-14  Score=123.69  Aligned_cols=146  Identities=18%  Similarity=0.278  Sum_probs=110.2

Q ss_pred             HHHHHHHHhcCCC-chHHHHHHHHhCCC---CCcc---------ccCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCc
Q 023240           87 ASACIVCARSQDD-DYHATIKALNSKGR---FPRK---------SLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPG  151 (285)
Q Consensus        87 r~~mv~~q~~~~~-~~~~~~~~~~~~~~---~~~~---------~~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG  151 (285)
                      ++.|++++.+..- ....+.+.+...+.   -+..         ..|+ ++..|.+...|++.+  .++++++|||||||
T Consensus        12 ~~~lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~~aY~D~~lpi~~~~-~is~P~~~a~~l~~L~~~l~~g~~VLeIGtG   90 (223)
T d1r18a_          12 NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGV-TISAPHMHAFALEYLRDHLKPGARILDVGSG   90 (223)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCT
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCccccCCCCccccCCc-eeehhhhHHHHHHHHhhccCCCCeEEEecCC
Confidence            4688986554443 56777777765321   1211         1244 788899999999998  67899999999999


Q ss_pred             ccHHHHHHHHh----C----CEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          152 TGSLTNVLLNA----G----ATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       152 ~G~~t~~la~~----~----~~V~giD~~~~~v~~a~~~~~~~-------~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +||+|..+++.    |    .+|++||+++++++.|++++...       .|+.++++|+.+..            .+.+
T Consensus        91 sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~------------~~~~  158 (223)
T d1r18a_          91 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY------------PPNA  158 (223)
T ss_dssp             TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC------------GGGC
T ss_pred             CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc------------cccc
Confidence            99999999875    2    38999999999999999886532       48999999998865            3457


Q ss_pred             CceEEEEcCC-CCCcHHHHHHhccCCCcee
Q 023240          217 GFAKVVANIP-FNISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       217 ~~D~Vv~n~P-~~~~~~i~~~l~~~g~~~~  245 (285)
                      +||.|+.+-. ...+..++++|.++|.++.
T Consensus       159 ~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         159 PYNAIHVGAAAPDTPTELINQLASGGRLIV  188 (223)
T ss_dssp             SEEEEEECSCBSSCCHHHHHTEEEEEEEEE
T ss_pred             ceeeEEEEeechhchHHHHHhcCCCcEEEE
Confidence            8999988743 4567788888887776653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=6e-15  Score=122.80  Aligned_cols=93  Identities=17%  Similarity=0.340  Sum_probs=79.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccchhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~~~~  204 (285)
                      ..+.+++.+.+.++.+|||+|||+|.+++.++..+.+|+++|+|+.+++.|+++++.++    +++++.+|+.+.     
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~-----  114 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-----  114 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-----
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh-----
Confidence            35667888888889999999999999999999888899999999999999999987552    689999998773     


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCCCcHHHH
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~  234 (285)
                              .....||+|++||||+...+.+
T Consensus       115 --------~~~~~fD~Ii~~~p~~~~~~~~  136 (194)
T d1dusa_         115 --------VKDRKYNKIITNPPIRAGKEVL  136 (194)
T ss_dssp             --------CTTSCEEEEEECCCSTTCHHHH
T ss_pred             --------hccCCceEEEEcccEEecchhh
Confidence                    2457899999999998776543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.56  E-value=8.4e-15  Score=124.08  Aligned_cols=87  Identities=20%  Similarity=0.284  Sum_probs=75.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      +.++++.++++++.+|||||||+|.++..+++.+++|+|+|+|+.|++.|++++...  ++++++++|+.++++      
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~------   77 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF------   77 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS------
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccc------
Confidence            457888899999999999999999999999999999999999999999999988654  589999999999875      


Q ss_pred             HHhhhcCCCCceEEEEcCCCC
Q 023240          208 LFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                            +.++||+|++.--++
T Consensus        78 ------~~~~fD~v~~~~~l~   92 (231)
T d1vl5a_          78 ------TDERFHIVTCRIAAH   92 (231)
T ss_dssp             ------CTTCEEEEEEESCGG
T ss_pred             ------ccccccccccccccc
Confidence                  357899999975544

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=3.4e-14  Score=123.28  Aligned_cols=106  Identities=19%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             CCCccccCCc-ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeE
Q 023240          113 RFPRKSLGQH-YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLK  190 (285)
Q Consensus       113 ~~~~~~~g~~-~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~  190 (285)
                      ++|...||.- ..+..-.++.+....  .++++|||+|||+|.+++.+++.|++|+|+|+|+.+++.|++|++.++ +++
T Consensus        93 i~pg~aFGTG~H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~  170 (254)
T d2nxca1          93 IEPGMAFGTGHHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPR  170 (254)
T ss_dssp             CCCC-----CCSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCE
T ss_pred             EccccccCccccchhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCcee
Confidence            4566677652 223334444444333  478899999999999999999889999999999999999999998776 788


Q ss_pred             EEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHH
Q 023240          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (285)
Q Consensus       191 ~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i  233 (285)
                      ++++|+.+.             ...++||+|++|...+....+
T Consensus       171 ~~~~d~~~~-------------~~~~~fD~V~ani~~~~l~~l  200 (254)
T d2nxca1         171 FLEGSLEAA-------------LPFGPFDLLVANLYAELHAAL  200 (254)
T ss_dssp             EEESCHHHH-------------GGGCCEEEEEEECCHHHHHHH
T ss_pred             EEecccccc-------------ccccccchhhhccccccHHHH
Confidence            999987653             234689999999776554433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.46  E-value=1.4e-13  Score=110.20  Aligned_cols=98  Identities=15%  Similarity=0.265  Sum_probs=77.2

Q ss_pred             HHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhh
Q 023240          132 QLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       132 ~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~  206 (285)
                      .+...++.. ++.+|||+|||+|.+++.++.+|+ +|++||.++.+++.+++|++..+   +++++++|+.+...     
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~-----   78 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID-----   78 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH-----
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccc-----
Confidence            344555432 688999999999999998888864 89999999999999999998763   79999999877421     


Q ss_pred             hHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhccC
Q 023240          207 SLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPM  240 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~~~  240 (285)
                            ....+||+|+.||||...  .+.++.+...
T Consensus        79 ------~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~  108 (152)
T d2esra1          79 ------CLTGRFDLVFLDPPYAKETIVATIEALAAK  108 (152)
T ss_dssp             ------HBCSCEEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred             ------ccccccceeEechhhccchHHHHHHHHHHC
Confidence                  345789999999999643  3555655543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.4e-13  Score=115.59  Aligned_cols=90  Identities=13%  Similarity=0.221  Sum_probs=78.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~  199 (285)
                      ...++.++.+.+.+.+.++.+|||||||+|.++..+++. +++|+|||+|+.|++.|+++....+   +++++++|+.++
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            346778889999999999999999999999999999886 7899999999999999999887653   699999999987


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      .             ..++||.|++.-.
T Consensus        96 ~-------------~~~~fD~v~~~~~  109 (245)
T d1nkva_          96 V-------------ANEKCDVAACVGA  109 (245)
T ss_dssp             C-------------CSSCEEEEEEESC
T ss_pred             c-------------ccCceeEEEEEeh
Confidence            3             3467999998644

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=1.6e-13  Score=119.54  Aligned_cols=109  Identities=20%  Similarity=0.343  Sum_probs=89.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEEcc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQED  195 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~-----~~v~~~~gD  195 (285)
                      ++-+..+..++..+++.+|.+|||+|||+|++|..||+.   .++|+++|+++++++.|++|++..     ++++++++|
T Consensus        79 iiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          79 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             ccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            455778899999999999999999999999999999987   469999999999999999988742     489999999


Q ss_pred             cccccchhhhhhHHhhhcCCCCceEEEEcCCC--CCcHHHHHHhccCCCce
Q 023240          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (285)
Q Consensus       196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~--~~~~~i~~~l~~~g~~~  244 (285)
                      +.+.++            +...||.|+.+.|-  .....+.+.|.++|.+.
T Consensus       159 ~~~~~~------------~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv  197 (264)
T d1i9ga_         159 LADSEL------------PDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLM  197 (264)
T ss_dssp             GGGCCC------------CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEE
T ss_pred             cccccc------------cCCCcceEEEecCCHHHHHHHHHhccCCCCEEE
Confidence            988764            45789999999774  44445555555554443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=3.2e-13  Score=115.52  Aligned_cols=83  Identities=22%  Similarity=0.314  Sum_probs=71.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d  207 (285)
                      .+..++......++.+|||||||+|.++..+++.+.+|+|||+|+.|++.|++++...+ +++++++|+.++++      
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~------  102 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF------  102 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC------
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhccc------
Confidence            34555666666678899999999999999999999999999999999999999987654 89999999999864      


Q ss_pred             HHhhhcCCCCceEEEEc
Q 023240          208 LFERRKSSSGFAKVVAN  224 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n  224 (285)
                             ++.||+|++.
T Consensus       103 -------~~~fD~I~~~  112 (251)
T d1wzna1         103 -------KNEFDAVTMF  112 (251)
T ss_dssp             -------CSCEEEEEEC
T ss_pred             -------ccccchHhhh
Confidence                   3579999874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2.6e-13  Score=118.74  Aligned_cols=90  Identities=21%  Similarity=0.396  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~  203 (285)
                      .++...+.... ..+.+|||+|||+|.+++.++..  ..+|+|+|+|+.+++.|++|++.++  +++++++|..+.    
T Consensus        96 ~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~----  170 (274)
T d2b3ta1          96 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA----  170 (274)
T ss_dssp             HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG----
T ss_pred             hhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc----
Confidence            34555555443 34678999999999999999886  6799999999999999999998664  799999998763    


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFNIST  231 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~~~  231 (285)
                               ....+||+||+||||-...
T Consensus       171 ---------~~~~~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         171 ---------LAGQQFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             ---------GTTCCEEEEEECCCCBCTT
T ss_pred             ---------cCCCceeEEEecchhhhhh
Confidence                     2346899999999996543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.43  E-value=1.8e-13  Score=118.30  Aligned_cols=105  Identities=18%  Similarity=0.304  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~  200 (285)
                      +.-+..++.++.+++|.+|||+|||+|+++..||+.   .++|+++|+++++++.|++|++..   +++++.++|+.+..
T Consensus        71 pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          71 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI  150 (250)
T ss_dssp             ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc
Confidence            344567888999999999999999999999999986   469999999999999999999865   48999999998752


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCC--CCcHHHHHHhccCCCce
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~--~~~~~i~~~l~~~g~~~  244 (285)
                                   ....||.|+.|+|-  .....+.+.|.++|.+.
T Consensus       151 -------------~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv  183 (250)
T d1yb2a1         151 -------------SDQMYDAVIADIPDPWNHVQKIASMMKPGSVAT  183 (250)
T ss_dssp             -------------CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEE
T ss_pred             -------------ccceeeeeeecCCchHHHHHHHHHhcCCCceEE
Confidence                         34679999999774  34455555555554443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.43  E-value=3.7e-13  Score=117.80  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=72.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (285)
                      +..+.....+.++.+|||||||+|.++..+++. +++|+|||+++.+++.|+++....   ++++++++|+.++|+    
T Consensus        56 ~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~----  131 (282)
T d2o57a1          56 ASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC----  131 (282)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS----
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccc----
Confidence            344455556778999999999999999999987 889999999999999999987653   489999999999874    


Q ss_pred             hhHHhhhcCCCCceEEEEcCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                              +.++||+|++.-.+
T Consensus       132 --------~~~sfD~V~~~~~l  145 (282)
T d2o57a1         132 --------EDNSYDFIWSQDAF  145 (282)
T ss_dssp             --------CTTCEEEEEEESCG
T ss_pred             --------cccccchhhccchh
Confidence                    45789999997554

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.42  E-value=1.5e-13  Score=112.57  Aligned_cols=86  Identities=17%  Similarity=0.072  Sum_probs=70.6

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--------------CCeEEEEcccc
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--------------DQLKVLQEDFV  197 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--------------~~v~~~~gD~~  197 (285)
                      .....+.+.++.+|||+|||+|..+..||+.|.+|+|+|+|+.|++.|+++.+..              .+++++.+|+.
T Consensus        11 ~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          11 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            3466678888999999999999999999999999999999999999999987542              25678888888


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +++..           ....||.|++.-.++
T Consensus        91 ~l~~~-----------~~~~~D~i~~~~~l~  110 (201)
T d1pjza_          91 ALTAR-----------DIGHCAAFYDRAAMI  110 (201)
T ss_dssp             SSTHH-----------HHHSEEEEEEESCGG
T ss_pred             ccccc-----------cccceeEEEEEeeeE
Confidence            87642           336789998865543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=3.7e-13  Score=109.87  Aligned_cols=106  Identities=15%  Similarity=0.191  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccc
Q 023240          125 LNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI  201 (285)
Q Consensus       125 ~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~  201 (285)
                      +...+.+.+..++.  ...+.+|||+|||+|.+++.++.+|++|+++|.|+.+++.+++|++.++ +.++...|+.....
T Consensus        23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~  102 (171)
T d1ws6a1          23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP  102 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH
T ss_pred             CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccc
Confidence            44445555555543  3467899999999999999988899999999999999999999988654 44555555543211


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCCCc-HHHHHHhc
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLL  238 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~-~~i~~~l~  238 (285)
                      ..        .....+||+|++||||... ...+..++
T Consensus       103 ~~--------~~~~~~fD~If~DPPY~~~~~~~l~~l~  132 (171)
T d1ws6a1         103 EA--------KAQGERFTVAFMAPPYAMDLAALFGELL  132 (171)
T ss_dssp             HH--------HHTTCCEEEEEECCCTTSCTTHHHHHHH
T ss_pred             cc--------cccCCccceeEEccccccCHHHHHHHHH
Confidence            00        0345679999999999754 23444443

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=2.6e-13  Score=113.78  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      .+..+|||||||+|.++..+++.+.+|+|+|+|+.|++.|+++.... .++.++++|+.++++            ...+|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~------------~~~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSF------------EDKTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCS------------CTTCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccc------------cCcCc
Confidence            36679999999999999999999999999999999999999987654 478999999999874            45789


Q ss_pred             eEEEEcCCCC
Q 023240          219 AKVVANIPFN  228 (285)
Q Consensus       219 D~Vv~n~P~~  228 (285)
                      |+|+++--++
T Consensus       104 D~I~~~~~l~  113 (226)
T d1ve3a1         104 DYVIFIDSIV  113 (226)
T ss_dssp             EEEEEESCGG
T ss_pred             eEEEEecchh
Confidence            9999975544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.39  E-value=1.1e-12  Score=108.93  Aligned_cols=83  Identities=20%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhh
Q 023240          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +..+...++.+|||||||+|..+..+++++.+|+|+|+|+.+++.|+++.+..  +++++..+|+.+.++          
T Consensus        23 ~~~~~~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~----------   92 (198)
T d2i6ga1          23 LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF----------   92 (198)
T ss_dssp             HHHHTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC----------
T ss_pred             HHHcccCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc----------
Confidence            33444445669999999999999999999999999999999999999887754  478999999988753          


Q ss_pred             hcCCCCceEEEEcCCCCC
Q 023240          212 RKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~  229 (285)
                         .+.||+|+++..++.
T Consensus        93 ---~~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          93 ---DGEYDFILSTVVMMF  107 (198)
T ss_dssp             ---CCCEEEEEEESCGGG
T ss_pred             ---cccccEEEEeeeeec
Confidence               467999999866553

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.5e-12  Score=107.33  Aligned_cols=117  Identities=17%  Similarity=0.200  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccccc
Q 023240          125 LNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~  200 (285)
                      +...+.+.+...+.. ..+.+|||++||+|.+++..+.+|+ +|+.||.|+.+++.+++|++..  .+++++.+|+.+..
T Consensus        26 t~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l  105 (183)
T d2fpoa1          26 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  105 (183)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             CcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc
Confidence            344455555555432 2678999999999999999888876 8999999999999999998865  48999999987653


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhccCCCceeeeEeeeh
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPMGDIFSEVVLLLQ  252 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~~~g~~~~~~~~~~~  252 (285)
                      -           .....||+|+.+|||...  ..++..+...+-+-......++
T Consensus       106 ~-----------~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         106 A-----------QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             S-----------SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             c-----------ccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            1           345679999999999753  4555665544333333333333

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.9e-12  Score=117.05  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=96.7

Q ss_pred             CccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEE
Q 023240          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVL  192 (285)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~  192 (285)
                      +..+|+.|....+.+++.+++++...++.+|||+.||+|.+++.||+.+.+|+|||.++.+++.|++|.+.++  |++++
T Consensus       186 p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~  265 (358)
T d1uwva2         186 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY  265 (358)
T ss_dssp             SSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceee
Confidence            3344555556667778888888888888999999999999999999999999999999999999999988775  99999


Q ss_pred             EcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccC
Q 023240          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM  240 (285)
Q Consensus       193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~  240 (285)
                      .+|+.+......        .....+|+||.|||.....+++.++...
T Consensus       266 ~~~~~~~~~~~~--------~~~~~~d~vilDPPR~G~~~~~~~l~~~  305 (358)
T d1uwva2         266 HENLEEDVTKQP--------WAKNGFDKVLLDPARAGAAGVMQQIIKL  305 (358)
T ss_dssp             ECCTTSCCSSSG--------GGTTCCSEEEECCCTTCCHHHHHHHHHH
T ss_pred             ecchhhhhhhhh--------hhhccCceEEeCCCCccHHHHHHHHHHc
Confidence            999876431100        2346789999999998888888887753

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.36  E-value=1e-12  Score=112.45  Aligned_cols=82  Identities=21%  Similarity=0.245  Sum_probs=67.2

Q ss_pred             HHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhh
Q 023240          130 NDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       130 ~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~  206 (285)
                      +..+.+.+..  .++.+|||||||+|.++..+++.+.+|+|||.|+.|++.|+++....+ +++++++|+.++++     
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-----   98 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-----   98 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-----
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-----
Confidence            4444444432  245799999999999999999999999999999999999999887654 89999999998753     


Q ss_pred             hHHhhhcCCCCceEEEEc
Q 023240          207 SLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n  224 (285)
                              .++||+|++.
T Consensus        99 --------~~~fD~i~~~  108 (246)
T d1y8ca_          99 --------NRKFDLITCC  108 (246)
T ss_dssp             --------SCCEEEEEEC
T ss_pred             --------ccccccccee
Confidence                    3579999873

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2e-12  Score=109.77  Aligned_cols=93  Identities=9%  Similarity=-0.013  Sum_probs=77.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-----------------
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------------  186 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-----------------  186 (285)
                      ..++.+.+.+.+.+.+.++.+|||+|||+|..+..||+.|.+|+|||+|+.+++.|+++....                 
T Consensus        28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            355777788888888888899999999999999999999999999999999999999876421                 


Q ss_pred             --CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       187 --~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                        .+++++++|+.+++.           ...+.||+|+..--+
T Consensus       108 ~~~~v~~~~~d~~~l~~-----------~~~~~fd~i~~~~~l  139 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPR-----------TNIGKFDMIWDRGAL  139 (229)
T ss_dssp             TTSSEEEEESCGGGGGG-----------SCCCCEEEEEESSST
T ss_pred             cCCcEEEEEcchhhccc-----------cccCceeEEEEEEEE
Confidence              378999999988764           345789999875443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.8e-12  Score=116.01  Aligned_cols=111  Identities=18%  Similarity=0.238  Sum_probs=84.5

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC-------------C
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-------------D  187 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~-------------~  187 (285)
                      ++-+.-+..|+..+++.+|.+|||+|||+|+++..||+.   .++|+++|+++++++.|++|++..             +
T Consensus        81 iiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~  160 (324)
T d2b25a1          81 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  160 (324)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            344677888999999999999999999999999999986   469999999999999999998631             4


Q ss_pred             CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC--CCCcHHHHHHhccCCCce
Q 023240          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P--~~~~~~i~~~l~~~g~~~  244 (285)
                      |+.+.++|+.+....          .....||.||.++|  +.....+.+.|.++|.+.
T Consensus       161 nv~~~~~di~~~~~~----------~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv  209 (324)
T d2b25a1         161 NVDFIHKDISGATED----------IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCA  209 (324)
T ss_dssp             CEEEEESCTTCCC-----------------EEEEEECSSSTTTTHHHHGGGEEEEEEEE
T ss_pred             ceeEEecchhhcccc----------cCCCCcceEeecCcCHHHHHHHHHHhccCCCEEE
Confidence            899999999876431          23467999999876  344455555555554443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=3.2e-12  Score=111.38  Aligned_cols=109  Identities=19%  Similarity=0.331  Sum_probs=87.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~  197 (285)
                      ++-+.....|+.++++.+|.+|||+|||+|+++..+|+.   +++|+++|+++++++.|+++++..+   ++.+..+|+.
T Consensus        86 iiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~  165 (266)
T d1o54a_          86 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  165 (266)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence            445678889999999999999999999999999999986   4699999999999999999998764   7888888875


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCC--CCCcHHHHHHhccCCCcee
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFS  245 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P--~~~~~~i~~~l~~~g~~~~  245 (285)
                      ..             .....+|.|+.+.|  +.....+.+.|.++|.+..
T Consensus       166 ~~-------------~~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~  202 (266)
T d1o54a_         166 EG-------------FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFAT  202 (266)
T ss_dssp             GC-------------CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEE
T ss_pred             cc-------------ccccceeeeEecCCCHHHHHHHHHhhcCCCCEEEE
Confidence            43             24567999999866  3444555566666655543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.34  E-value=4.6e-12  Score=104.27  Aligned_cols=110  Identities=15%  Similarity=0.317  Sum_probs=84.9

Q ss_pred             ccCCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~  197 (285)
                      -.+...+.+.+...+.. ..+.+|||++||+|.+++.++.+|+ +|++||.|+.+++.+++|++..   .+++++++|+.
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~  101 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN  101 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch
Confidence            34556677777777764 3688999999999999999999976 7999999999999999998754   38999999997


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhccC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPM  240 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~~~  240 (285)
                      +.--.     +.   ....+||+|+.+|||...  ...+..+...
T Consensus       102 ~~l~~-----~~---~~~~~fDlIflDPPY~~~~~~~~l~~i~~~  138 (182)
T d2fhpa1         102 RALEQ-----FY---EEKLQFDLVLLDPPYAKQEIVSQLEKMLER  138 (182)
T ss_dssp             HHHHH-----HH---HTTCCEEEEEECCCGGGCCHHHHHHHHHHT
T ss_pred             hhhhh-----hc---ccCCCcceEEechhhhhhHHHHHHHHHHHC
Confidence            74210     00   245679999999999643  5666666543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=5.4e-12  Score=109.84  Aligned_cols=91  Identities=15%  Similarity=0.250  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ..++.+|||||||+|.++..+++.  +.+++|+|+|+.|++.|+++.   ++++++++|+.++++            ..+
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~l~~------------~~~  146 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLPF------------SDT  146 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCSB------------CTT
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhhccC------------CCC
Confidence            446789999999999999999987  569999999999999999874   589999999999985            447


Q ss_pred             CceEEEEcCCCCCcHHHHHHhccCCCce
Q 023240          217 GFAKVVANIPFNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~~i~~~l~~~g~~~  244 (285)
                      .||+|++........++.+.|.++|.++
T Consensus       147 sfD~v~~~~~~~~~~e~~rvLkpgG~l~  174 (268)
T d1p91a_         147 SMDAIIRIYAPCKAEELARVVKPGGWVI  174 (268)
T ss_dssp             CEEEEEEESCCCCHHHHHHHEEEEEEEE
T ss_pred             CEEEEeecCCHHHHHHHHHHhCCCcEEE
Confidence            7999998755555566555554544443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=1.5e-11  Score=108.44  Aligned_cols=85  Identities=15%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~  203 (285)
                      ..++.+++.+.+++|.+|||||||+|.++..+|+. +++|+||++|++.++.+++++...+   .+++...|...     
T Consensus        48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~-----  122 (291)
T d1kpia_          48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-----  122 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-----
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc-----
Confidence            44778889999999999999999999999999876 9999999999999999999887653   67777777543     


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                                ..++||.|++.--+
T Consensus       123 ----------~~~~fD~i~sie~~  136 (291)
T d1kpia_         123 ----------FDEPVDRIVSLGAF  136 (291)
T ss_dssp             ----------CCCCCSEEEEESCG
T ss_pred             ----------cccccceEeechhH
Confidence                      24679999985433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=6.1e-12  Score=110.65  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (285)
                      ...+.+++.+.+++|.+|||||||+|.+++.+|+. |++|+||.+|++.++.|++++...   +++++..+|+.+++   
T Consensus        49 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---  125 (285)
T d1kpga_          49 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---  125 (285)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---
Confidence            44677888899999999999999999999998887 999999999999999999987765   48999999987653   


Q ss_pred             hhhhHHhhhcCCCCceEEEEc
Q 023240          204 HMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                                  ++||.|++-
T Consensus       126 ------------~~fD~i~si  134 (285)
T d1kpga_         126 ------------EPVDRIVSI  134 (285)
T ss_dssp             ------------CCCSEEEEE
T ss_pred             ------------ccccceeee
Confidence                        578999885

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.30  E-value=5.1e-12  Score=110.23  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccch
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIR  202 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~  202 (285)
                      +.+++.++......+..+|+|+|||+|..+..++.. .++|+++|+|+.+++.|++|++.++   ++.+..+|..+... 
T Consensus        96 E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~-  174 (271)
T d1nv8a_          96 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-  174 (271)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-
T ss_pred             hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc-
Confidence            344555565555455679999999999999998876 6799999999999999999998764   67888999877532 


Q ss_pred             hhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240          203 SHMLSLFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                                ...+.||+||+||||-..
T Consensus       175 ----------~~~~~fDlIVsNPPYI~~  192 (271)
T d1nv8a_         175 ----------EKFASIEMILSNPPYVKS  192 (271)
T ss_dssp             ----------GGTTTCCEEEECCCCBCG
T ss_pred             ----------cccCcccEEEEcccccCc
Confidence                      234689999999999643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=1e-11  Score=108.93  Aligned_cols=84  Identities=18%  Similarity=0.231  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchh
Q 023240          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~  203 (285)
                      ...+.+++.+.+++|.+|||||||+|.++..+++. +++|+|||+|+++++.|+++++..+   ++.+...|..+.    
T Consensus        39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----  114 (280)
T d2fk8a1          39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----  114 (280)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----
Confidence            34677888889999999999999999999999877 8999999999999999999987654   677777776654    


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                                 +++||.|++---
T Consensus       115 -----------~~~fD~i~si~~  126 (280)
T d2fk8a1         115 -----------AEPVDRIVSIEA  126 (280)
T ss_dssp             -----------CCCCSEEEEESC
T ss_pred             -----------ccchhhhhHhhH
Confidence                       367999988533

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.29  E-value=5.7e-12  Score=105.94  Aligned_cols=99  Identities=14%  Similarity=0.098  Sum_probs=76.3

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +.++++.+|||+|||+|+.+..+++.  .++|+|||+++.|++.|+++.+..+|+.++.+|+.+.+...         ..
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~---------~~  122 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS---------GI  122 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT---------TT
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccc---------cc
Confidence            56678999999999999999999986  36899999999999999999988889999999998865432         12


Q ss_pred             CCCceEEEEcCCCCCcHHH-H---HHhccCCCce
Q 023240          215 SSGFAKVVANIPFNISTDV-I---KQLLPMGDIF  244 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~~~~~i-~---~~l~~~g~~~  244 (285)
                      ...+|+|+.+.++....+. +   .+++.+|+.+
T Consensus       123 ~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l  156 (209)
T d1nt2a_         123 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEV  156 (209)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             cceEEEEEecccChhhHHHHHHHHHHHhccCCeE
Confidence            3457888888766544322 2   3455555554

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.29  E-value=4.5e-12  Score=111.05  Aligned_cols=90  Identities=17%  Similarity=0.274  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHh-cCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEccccccc
Q 023240          126 NSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH  200 (285)
Q Consensus       126 ~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~  200 (285)
                      ..+.+..++..+ .+.++.+|||||||+|..+..++..   +.+|+|+|+++.+++.|++++...+ +++++++|+.+++
T Consensus        11 n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~   90 (281)
T d2gh1a1          11 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE   90 (281)
T ss_dssp             CHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred             hHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc
Confidence            355666666654 4567889999999999999999875   5799999999999999999988765 8999999999876


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +             .++||+|+++.-++
T Consensus        91 ~-------------~~~fD~v~~~~~l~  105 (281)
T d2gh1a1          91 L-------------NDKYDIAICHAFLL  105 (281)
T ss_dssp             C-------------SSCEEEEEEESCGG
T ss_pred             c-------------cCCceEEEEehhhh
Confidence            3             25699999986654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=4.6e-12  Score=110.01  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhh
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~  206 (285)
                      .++...+  .++.+|||+|||+|.+++.+|+.+ ++|+++|+|+.+++.+++|++.++   +++++++|+.++.      
T Consensus        99 ~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~------  170 (260)
T d2frna1          99 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------  170 (260)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------
T ss_pred             HHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc------
Confidence            3454543  478999999999999999999886 599999999999999999998764   6999999998874      


Q ss_pred             hHHhhhcCCCCceEEEEcCCCC
Q 023240          207 SLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                             ..+.||.|++|||..
T Consensus       171 -------~~~~~D~Ii~~~p~~  185 (260)
T d2frna1         171 -------GENIADRILMGYVVR  185 (260)
T ss_dssp             -------CCSCEEEEEECCCSS
T ss_pred             -------cCCCCCEEEECCCCc
Confidence                   457799999998864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.27  E-value=4.9e-12  Score=109.35  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=75.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d  207 (285)
                      ..+.+++.+...++.+|||+|||+|.++..++.. ..+|++||.++.|++.|++++...++++++++|+.++++      
T Consensus        81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~------  154 (254)
T d1xtpa_          81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL------  154 (254)
T ss_dssp             HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC------
T ss_pred             HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEcccccccc------
Confidence            4456777777777889999999999999988766 568999999999999999998766789999999999874      


Q ss_pred             HHhhhcCCCCceEEEEcCCCCCc
Q 023240          208 LFERRKSSSGFAKVVANIPFNIS  230 (285)
Q Consensus       208 ~~~~~~~~~~~D~Vv~n~P~~~~  230 (285)
                            ..+.||+|++...++..
T Consensus       155 ------~~~~fD~I~~~~vl~hl  171 (254)
T d1xtpa_         155 ------PPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             ------CSSCEEEEEEESCGGGS
T ss_pred             ------CCCccceEEeecccccc
Confidence                  45789999998766543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.2e-12  Score=107.48  Aligned_cols=85  Identities=18%  Similarity=0.187  Sum_probs=64.4

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ..+|||+|||+|.+++.++..  +.+++|+|+++++++.|++|++.++   ++.+++.+....-+.     .+.. ...+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~-----~~~~-~~~~  135 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMD-----ALKE-ESEI  135 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTT-----TSTT-CCSC
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhh-----hhhh-cccC
Confidence            458999999999999999886  7899999999999999999998764   688888765443211     0100 2346


Q ss_pred             CceEEEEcCCCCCcHH
Q 023240          217 GFAKVVANIPFNISTD  232 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~~  232 (285)
                      .||+|++||||....+
T Consensus       136 ~fD~ivsNPPY~~~~e  151 (250)
T d2h00a1         136 IYDFCMCNPPFFANQL  151 (250)
T ss_dssp             CBSEEEECCCCC----
T ss_pred             ceeEEEecCcccccch
Confidence            7999999999986543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=1.5e-11  Score=104.11  Aligned_cols=68  Identities=25%  Similarity=0.356  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      ++.+|||+|||+|.++..+++.+++|+|+|+|+.|++.|+++..    ..++.+|+.++++            +.+.||+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~----~~~~~~~~~~l~~------------~~~~fD~  105 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----KNVVEAKAEDLPF------------PSGAFEA  105 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----SCEEECCTTSCCS------------CTTCEEE
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc----ccccccccccccc------------ccccccc
Confidence            56799999999999999999999999999999999999998742    3468899999874            3478999


Q ss_pred             EEEc
Q 023240          221 VVAN  224 (285)
Q Consensus       221 Vv~n  224 (285)
                      |++.
T Consensus       106 ii~~  109 (246)
T d2avna1         106 VLAL  109 (246)
T ss_dssp             EEEC
T ss_pred             eeee
Confidence            9874

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=1.2e-11  Score=104.37  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .++.+|||+|||+|..+..+++.    +.+|+|+|+|+.|++.|+++.+..+   ++.+..+|+.+.+.           
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-----------  106 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----------  106 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-----------
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-----------
Confidence            36789999999999999999873    6799999999999999999887543   77888889887653           


Q ss_pred             cCCCCceEEEEcCCC
Q 023240          213 KSSSGFAKVVANIPF  227 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~  227 (285)
                         ..+|.|+++--+
T Consensus       107 ---~~~d~i~~~~~l  118 (225)
T d1im8a_         107 ---KNASMVILNFTL  118 (225)
T ss_dssp             ---CSEEEEEEESCG
T ss_pred             ---ccceeeEEeeec
Confidence               567888886444

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.4e-12  Score=106.00  Aligned_cols=78  Identities=10%  Similarity=0.091  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ..++.+|||||||+|..+..++.. +.+|+|||+|+.|++.|++++...  ++++++++|+.++++            ..
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~------------~~  125 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP------------EP  125 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC------------CS
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccc------------cc
Confidence            345679999999999999988755 568999999999999999998754  378999999999873            45


Q ss_pred             CCceEEEEcCCCC
Q 023240          216 SGFAKVVANIPFN  228 (285)
Q Consensus       216 ~~~D~Vv~n~P~~  228 (285)
                      ..||+|++.--++
T Consensus       126 ~~fD~I~~~~~l~  138 (222)
T d2ex4a1         126 DSYDVIWIQWVIG  138 (222)
T ss_dssp             SCEEEEEEESCGG
T ss_pred             ccccccccccccc
Confidence            7899999975543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.24  E-value=1.2e-11  Score=106.29  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      ..++.+|||+|||+|..+..+++.+ .+|+|||+|+.|++.|++++...   .++.++++|+...++           ..
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~-----------~~   90 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM-----------DL   90 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC-----------CC
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc-----------cc
Confidence            3467899999999999999998876 58999999999999999987654   378999999977653           23


Q ss_pred             CCCceEEEEcCCCC
Q 023240          215 SSGFAKVVANIPFN  228 (285)
Q Consensus       215 ~~~~D~Vv~n~P~~  228 (285)
                      ...||+|+++--.+
T Consensus        91 ~~~fD~V~~~~~l~  104 (252)
T d1ri5a_          91 GKEFDVISSQFSFH  104 (252)
T ss_dssp             SSCEEEEEEESCGG
T ss_pred             cccceEEEEcceee
Confidence            56799999975543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.7e-11  Score=107.54  Aligned_cols=93  Identities=13%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhc-----------CCCeE
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-----------IDQLK  190 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~-----------~~~v~  190 (285)
                      .+....+..+++.+.++++.+|||||||+|..+..+|.. + .+++|||+++.+++.|+++.+.           .++++
T Consensus       134 e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         134 ETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             CCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             hhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            366888999999999999999999999999999999876 4 4899999999999999877543           25899


Q ss_pred             EEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       191 ~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      +++||+.+.++.+..+|          .|+|++|--
T Consensus       214 ~~~gd~~~~~~~~~~~~----------advi~~~~~  239 (328)
T d1nw3a_         214 LERGDFLSEEWRERIAN----------TSVIFVNNF  239 (328)
T ss_dssp             EEECCTTSHHHHHHHHH----------CSEEEECCT
T ss_pred             EEECcccccccccccCc----------ceEEEEcce
Confidence            99999999876543322          378887643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.4e-11  Score=103.19  Aligned_cols=89  Identities=19%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~  204 (285)
                      ..+...+...+. .+|.+|||||||+|.++..+++. +.+|++||+|+.+++.|+++.+..+ ++.++.+|+......  
T Consensus        40 ~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--  116 (229)
T d1zx0a1          40 TPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT--  116 (229)
T ss_dssp             HHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG--
T ss_pred             HHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccc--
Confidence            334444544444 46789999999999999999987 4689999999999999999987654 788888888765321  


Q ss_pred             hhhHHhhhcCCCCceEEEEcCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                              ...++||.|+.+..
T Consensus       117 --------~~~~~fD~i~fD~~  130 (229)
T d1zx0a1         117 --------LPDGHFDGILYDTY  130 (229)
T ss_dssp             --------SCTTCEEEEEECCC
T ss_pred             --------cccccccceeeccc
Confidence                    34578999987644

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=5.6e-11  Score=100.99  Aligned_cols=100  Identities=12%  Similarity=0.133  Sum_probs=77.7

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      .+.+++|.+|||+|||+|..+..+++.   .++|+|+|+++.+++.++++.+..+++..+.+|+.......         
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~---------  138 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR---------  138 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT---------
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccc---------
Confidence            445778999999999999999999986   47999999999999999999988889999999986653211         


Q ss_pred             cCCCCceEEEEcCCCCCcHH-HH---HHhccCCCce
Q 023240          213 KSSSGFAKVVANIPFNISTD-VI---KQLLPMGDIF  244 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~~-i~---~~l~~~g~~~  244 (285)
                      .....+|+|+.+.+...... ++   .+++.+|+.+
T Consensus       139 ~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~l  174 (227)
T d1g8aa_         139 ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYG  174 (227)
T ss_dssp             TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             ccccceEEEEEEccccchHHHHHHHHHHhcccCCeE
Confidence            23467899999988765433 22   3455555544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.1e-11  Score=105.05  Aligned_cols=84  Identities=17%  Similarity=0.282  Sum_probs=64.7

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      +.+.....++++|||||||+|.+++.+|+.|+ +|+|+|.++.+...++...+..  ++++++++|+.+++.        
T Consensus        27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~--------   98 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL--------   98 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------
T ss_pred             HHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcC--------
Confidence            33434445788999999999999999999875 8999999998865444333222  489999999999863        


Q ss_pred             hhhcCCCCceEEEEcCCCC
Q 023240          210 ERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~  228 (285)
                          ...++|+|++++..+
T Consensus        99 ----~~~~~D~Ivse~~~~  113 (311)
T d2fyta1          99 ----PVEKVDVIISEWMGY  113 (311)
T ss_dssp             ----SCSCEEEEEECCCBT
T ss_pred             ----ccccceEEEEeeeee
Confidence                457899999986643

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.17  E-value=3e-11  Score=101.99  Aligned_cols=73  Identities=15%  Similarity=0.302  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      .+.+|||||||+|.++..+++.+.+|+|||+|+++++.|+++..  .+++++++|+.+.++             +..||+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~--~~~~~~~~~~~~~~~-------------~~~fD~   84 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRFEDAQL-------------PRRYDN   84 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC--SCEEEEESCGGGCCC-------------SSCEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc--ccccccccccccccc-------------cccccc
Confidence            56789999999999999999889999999999999999998864  479999999988752             467999


Q ss_pred             EEEcCCCC
Q 023240          221 VVANIPFN  228 (285)
Q Consensus       221 Vv~n~P~~  228 (285)
                      |++.--++
T Consensus        85 I~~~~vle   92 (225)
T d2p7ia1          85 IVLTHVLE   92 (225)
T ss_dssp             EEEESCGG
T ss_pred             ccccceeE
Confidence            99875543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=2e-11  Score=108.87  Aligned_cols=95  Identities=19%  Similarity=0.156  Sum_probs=74.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~  200 (285)
                      ++.+....+.+++   ..++++|||++||+|.+++++|..+.+|+++|+|+.+++.|++|++.++  +++++++|+.++.
T Consensus       130 ~flDqr~~r~~~~---~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~  206 (318)
T d1wxxa2         130 AYLDQRENRLYME---RFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL  206 (318)
T ss_dssp             CCGGGHHHHHHGG---GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH
T ss_pred             cchhhhhhHHHHH---HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh
Confidence            4444544444333   3368899999999999999998777899999999999999999998775  8999999998753


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      -.     +.   ....+||+|+.|||..
T Consensus       207 ~~-----~~---~~~~~fD~Vi~DpP~~  226 (318)
T d1wxxa2         207 RR-----LE---KEGERFDLVVLDPPAF  226 (318)
T ss_dssp             HH-----HH---HTTCCEEEEEECCCCS
T ss_pred             hh-----hH---hhhcCCCEEEEcCCcc
Confidence            11     00   3457899999999964

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.17  E-value=3.2e-11  Score=106.80  Aligned_cols=93  Identities=20%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccc
Q 023240          127 SEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHI  201 (285)
Q Consensus       127 ~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~  201 (285)
                      ......+.+.+. ..++.+|||++||+|.+++.++..|++|++||.|+.+++.|++|++.++    +++++++|+.+.--
T Consensus       117 r~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~  196 (309)
T d2igta1         117 IVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ  196 (309)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH
T ss_pred             hHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHH
Confidence            444444444443 3467899999999999999999989999999999999999999988542    68999999987521


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      .     ..   .....||+||.|||.
T Consensus       197 ~-----~~---~~~~~fD~IilDPP~  214 (309)
T d2igta1         197 R-----EE---RRGSTYDIILTDPPK  214 (309)
T ss_dssp             H-----HH---HHTCCBSEEEECCCS
T ss_pred             H-----Hh---hcCCCCCEEEECCCc
Confidence            1     00   345789999999995

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.17  E-value=8.4e-11  Score=100.07  Aligned_cols=65  Identities=15%  Similarity=0.217  Sum_probs=58.1

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc
Q 023240          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~  200 (285)
                      .+.+++|.+|||+|||+|+.+..+++.  ++.|+|||+|+.|++.|+++....+++..+.+|+...+
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~  135 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ  135 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc
Confidence            345678999999999999999999987  46999999999999999999888889999999988765

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=4.7e-11  Score=106.67  Aligned_cols=97  Identities=25%  Similarity=0.252  Sum_probs=73.8

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~  199 (285)
                      ..+..-.+..+..+ ..++.+|||+|||+|.+++.++..|+ +|+++|+++.+++.|++|++.++   +++++++|+.+.
T Consensus       129 flDqr~~r~~~~~~-~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~  207 (324)
T d2as0a2         129 FLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE  207 (324)
T ss_dssp             CSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             ccchhhHHHHHHhh-cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh
Confidence            33443333333332 24688999999999999999998865 89999999999999999998774   789999998764


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      ...     +.   ....+||+||.|||...
T Consensus       208 ~~~-----~~---~~~~~fD~Vi~DpP~~~  229 (324)
T d2as0a2         208 MEK-----LQ---KKGEKFDIVVLDPPAFV  229 (324)
T ss_dssp             HHH-----HH---HTTCCEEEEEECCCCSC
T ss_pred             hHH-----HH---hccCCCCchhcCCcccc
Confidence            211     00   24578999999999754

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=8e-11  Score=105.13  Aligned_cols=78  Identities=19%  Similarity=0.353  Sum_probs=63.8

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhh
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      ....++++|||||||+|.+++.+|+.|+ +|+|+|.++ ++..|+++...+   ++++++++|+.++++           
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~-----------  101 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL-----------  101 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC-----------
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC-----------
Confidence            3334789999999999999999999875 899999996 667888777654   389999999999874           


Q ss_pred             cCCCCceEEEEcCCC
Q 023240          213 KSSSGFAKVVANIPF  227 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~  227 (285)
                       +..++|+|++++..
T Consensus       102 -~~~~~D~i~se~~~  115 (328)
T d1g6q1_         102 -PFPKVDIIISEWMG  115 (328)
T ss_dssp             -SSSCEEEEEECCCB
T ss_pred             -cccceeEEEEEecc
Confidence             45789999997553

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=1.5e-10  Score=95.07  Aligned_cols=116  Identities=16%  Similarity=0.226  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccc
Q 023240          128 EINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHI  201 (285)
Q Consensus       128 ~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~  201 (285)
                      .+.+.+...+.. ..+.+|||+.||||.+++..+.+|+ +|+.||.|..+++.+++|++..+    ...++..|+.+...
T Consensus        29 ~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~  108 (183)
T d2ifta1          29 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK  108 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred             HHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccc
Confidence            344445555433 2678999999999999999999976 89999999999999999988542    46777777655321


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhccCCCceeeeEeeeh
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPMGDIFSEVVLLLQ  252 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~~~g~~~~~~~~~~~  252 (285)
                      ..         .....||+|+.+|||...  .+.+..+...+-+-......++
T Consensus       109 ~~---------~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         109 QP---------QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             SC---------CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cc---------ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence            10         234579999999999764  4556666544333333344443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.12  E-value=2.2e-10  Score=95.72  Aligned_cols=75  Identities=16%  Similarity=0.241  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +...|||||||+|..+..+|+.  +..++|||+++.++..|.++.+..+  |+.++++|+..+.-      .    ...+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~------~----~~~~   98 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD------V----FEPG   98 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH------H----CCTT
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc------c----cCch
Confidence            4568999999999999999987  6799999999999999999887654  99999999987641      1    3457


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      .+|.|+.+-
T Consensus        99 ~~d~v~i~f  107 (204)
T d2fcaa1          99 EVKRVYLNF  107 (204)
T ss_dssp             SCCEEEEES
T ss_pred             hhhcccccc
Confidence            788887763

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.4e-10  Score=101.67  Aligned_cols=88  Identities=16%  Similarity=0.252  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC------CeEEEEccccccc
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID------QLKVLQEDFVKCH  200 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~------~v~~~~gD~~~~~  200 (285)
                      ......+...+...++.+|||+|||+|..+..|++.|.+|+|+|+|+.|++.|+++.....      ...+...|+...+
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  121 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc
Confidence            3344556666666677899999999999999999999999999999999999998876442      3445555555433


Q ss_pred             chhhhhhHHhhhcCCCCceEEEE
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                      ..     .    .....||.|++
T Consensus       122 ~~-----~----~~~~~fd~v~~  135 (292)
T d1xvaa_         122 KD-----V----PAGDGFDAVIC  135 (292)
T ss_dssp             HH-----S----CCTTCEEEEEE
T ss_pred             cc-----c----CCCCCceEEEE
Confidence            11     0    23467998886

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=1.4e-10  Score=103.08  Aligned_cols=74  Identities=16%  Similarity=0.256  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++++|||||||+|.+++.+|+.| .+|+|+|.++.+ ..++++.+.+   ++++++++|+.+++.            +..
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~------------~~~   99 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVEL------------PVE   99 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCC------------SSS
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccc------------ccc
Confidence            68899999999999999999987 489999999754 5666665544   479999999999873            457


Q ss_pred             CceEEEEcCCC
Q 023240          217 GFAKVVANIPF  227 (285)
Q Consensus       217 ~~D~Vv~n~P~  227 (285)
                      ++|+|+++...
T Consensus       100 ~~D~ivs~~~~  110 (316)
T d1oria_         100 KVDIIISEWMG  110 (316)
T ss_dssp             CEEEEEECCCB
T ss_pred             eeEEEeeeeee
Confidence            89999997553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.07  E-value=5.1e-10  Score=93.40  Aligned_cols=77  Identities=13%  Similarity=0.234  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ....|||||||+|.++..+|+.  ...++|+|+++.++..|.++....  .|+.++.+|+.++.-.          .+..
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~----------~~~~  100 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY----------FEDG  100 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----------SCTT
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh----------ccCC
Confidence            4568999999999999999997  679999999999999999888754  4999999999886411          3456


Q ss_pred             CceEEEEcCCC
Q 023240          217 GFAKVVANIPF  227 (285)
Q Consensus       217 ~~D~Vv~n~P~  227 (285)
                      .+|.|+.+-|-
T Consensus       101 ~~~~i~i~fPd  111 (204)
T d1yzha1         101 EIDRLYLNFSD  111 (204)
T ss_dssp             CCSEEEEESCC
T ss_pred             ceehhcccccc
Confidence            78999887553

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.3e-09  Score=91.82  Aligned_cols=117  Identities=21%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~  196 (285)
                      ..+.++....+.......++++|||||||+|++|+++|..   +++|+++|.+++..+.|+++++..+   +++++.||+
T Consensus        41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            4566777777777777778899999999999999999985   6799999999999999999998653   799999999


Q ss_pred             ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH---HHHHhccCCCcee
Q 023240          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIFS  245 (285)
Q Consensus       197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~---i~~~l~~~g~~~~  245 (285)
                      .+....     ++.. ...++||.|+.+-.......   ....++..|+++.
T Consensus       121 ~e~l~~-----~~~~-~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii  166 (219)
T d2avda1         121 LETLDE-----LLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILA  166 (219)
T ss_dssp             HHHHHH-----HHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcchh-----hhhh-cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEE
Confidence            875311     1111 24578999999865443333   2334555555553

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=3.4e-10  Score=100.78  Aligned_cols=97  Identities=14%  Similarity=0.191  Sum_probs=75.5

Q ss_pred             cCCcccCCHHHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHh-------CCEEEEEeCCHHHHHHHHHHhhcC-
Q 023240          119 LGQHYMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA-------GATVLAIEKDQHMVGLVRERFASI-  186 (285)
Q Consensus       119 ~g~~~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~-------~~~V~giD~~~~~v~~a~~~~~~~-  186 (285)
                      .|+ +++++.++..|...+    ...++.+|||.+||+|.+...+...       ..+++|+|+++.+++.|+.+.... 
T Consensus        92 ~g~-~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~  170 (328)
T d2f8la1          92 VNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  170 (328)
T ss_dssp             GGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             CCe-EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence            455 778888777666543    4556789999999999998887642       237999999999999999887644 


Q ss_pred             CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       187 ~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      .+..+.++|.....             ....||+||+||||..
T Consensus       171 ~~~~~~~~d~~~~~-------------~~~~fD~vi~NPPy~~  200 (328)
T d2f8la1         171 QKMTLLHQDGLANL-------------LVDPVDVVISDLPVGY  200 (328)
T ss_dssp             CCCEEEESCTTSCC-------------CCCCEEEEEEECCCSE
T ss_pred             hhhhhhcccccccc-------------ccccccccccCCCCCC
Confidence            37788888876653             3468999999999953

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.04  E-value=3.5e-09  Score=89.65  Aligned_cols=151  Identities=9%  Similarity=0.071  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHh--cCCCchHHHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHH
Q 023240           83 QKGAASACIVCAR--SQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL  160 (285)
Q Consensus        83 ~~~~r~~mv~~q~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la  160 (285)
                      ++..++++.+...  +..+.+.++.+...+.+.      . .....++....+...+...++++||||||++|+++++||
T Consensus         6 ~~~l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~------~-~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la   78 (227)
T d1susa1           6 SDALYQYILETSVFPREHEAMKELREVTAKHPW------N-IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATA   78 (227)
T ss_dssp             CHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTT------G-GGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHH
T ss_pred             cHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC------c-ccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHH
Confidence            3445566665433  233355555554444221      1 133556666666666666678899999999999999999


Q ss_pred             Hh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH---
Q 023240          161 NA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---  231 (285)
Q Consensus       161 ~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~---  231 (285)
                      +.   +++|+++|.+++..+.|++++++.+   +++++.||+.+.-..     ++......+.||.|+.+---....   
T Consensus        79 ~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~-----l~~~~~~~~~fD~iFiDa~k~~y~~~~  153 (227)
T d1susa1          79 LAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDE-----MIKDEKNHGSYDFIFVDADKDNYLNYH  153 (227)
T ss_dssp             HHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH-----HHHCGGGTTCBSEEEECSCSTTHHHHH
T ss_pred             hhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHH-----HHhccccCCceeEEEeccchhhhHHHH
Confidence            75   6799999999999999999998764   799999999875211     111001346899999985433222   


Q ss_pred             HHHHHhccCCCcee
Q 023240          232 DVIKQLLPMGDIFS  245 (285)
Q Consensus       232 ~i~~~l~~~g~~~~  245 (285)
                      +....++..|+++.
T Consensus       154 e~~~~ll~~gGiii  167 (227)
T d1susa1         154 KRLIDLVKVGGVIG  167 (227)
T ss_dssp             HHHHHHBCTTCCEE
T ss_pred             HHHHhhcCCCcEEE
Confidence            33345666666664

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.03  E-value=3.3e-10  Score=100.75  Aligned_cols=94  Identities=15%  Similarity=0.249  Sum_probs=72.2

Q ss_pred             cCCH-HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccc
Q 023240          124 MLNS-EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (285)
Q Consensus       124 ~~~~-~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~  197 (285)
                      +.+. +....++..+.  ++++|||++||+|.+++.++..|+ +|++||+++.+++.|++|++.++    +++++.+|+.
T Consensus       128 flDqR~~r~~l~~~~~--~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~  205 (317)
T d2b78a2         128 FLDQRQVRNELINGSA--AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF  205 (317)
T ss_dssp             CGGGHHHHHHHHHTTT--BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred             cHHHHHHHHHHHHHhh--CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH
Confidence            3443 34455555443  688999999999999999888765 89999999999999999998653    7899999997


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      +.--.     .   ......||+||.+||.
T Consensus       206 ~~l~~-----~---~~~~~~fD~Ii~DPP~  227 (317)
T d2b78a2         206 DYFKY-----A---RRHHLTYDIIIIDPPS  227 (317)
T ss_dssp             HHHHH-----H---HHTTCCEEEEEECCCC
T ss_pred             HHHHH-----H---HhhcCCCCEEEEcChh
Confidence            64210     0   0345689999999994

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=1.7e-10  Score=95.70  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      ++.+|||||||+|.++..++    +++|||+|+.+++.|+++     +++++++|+.++++            ..++||+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~~------------~~~~fD~   94 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR-----GVFVLKGTAENLPL------------KDESFDF   94 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT-----TCEEEECBTTBCCS------------CTTCEEE
T ss_pred             CCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc-----cccccccccccccc------------ccccccc
Confidence            45689999999999887763    578999999999999875     68999999999874            4578999


Q ss_pred             EEEcCCCC
Q 023240          221 VVANIPFN  228 (285)
Q Consensus       221 Vv~n~P~~  228 (285)
                      |+++--++
T Consensus        95 I~~~~~l~  102 (208)
T d1vlma_          95 ALMVTTIC  102 (208)
T ss_dssp             EEEESCGG
T ss_pred             cccccccc
Confidence            99975543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.00  E-value=6.6e-10  Score=102.54  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=83.5

Q ss_pred             CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---------------CCEEEEEeCCHHHHHH
Q 023240          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGL  178 (285)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---------------~~~V~giD~~~~~v~~  178 (285)
                      ..++..|+ |+|++.+++.|++.+.+.++.+|+|..||+|.+...+.+.               ...++|+|+++.+...
T Consensus       136 ~~~k~~G~-f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~l  214 (425)
T d2okca1         136 DKKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL  214 (425)
T ss_dssp             CTTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred             hhhccchh-hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHH
Confidence            45556787 9999999999999999988899999999999998877653               1259999999999999


Q ss_pred             HHHHhhcCC----CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          179 VRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       179 a~~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      |+.++.-.+    +..+..+|..+.+             ....||+|++||||+.
T Consensus       215 a~~n~~l~g~~~~~~~i~~~d~l~~~-------------~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         215 ASMNLYLHGIGTDRSPIVCEDSLEKE-------------PSTLVDVILANPPFGT  256 (425)
T ss_dssp             HHHHHHHTTCCSSCCSEEECCTTTSC-------------CSSCEEEEEECCCSSC
T ss_pred             HHhhhhhcCCccccceeecCchhhhh-------------cccccceEEecCCCCC
Confidence            998865332    5677888887643             4567999999999953

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=1.6e-09  Score=89.41  Aligned_cols=95  Identities=9%  Similarity=0.303  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchh
Q 023240          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (285)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~  203 (285)
                      |-+++.+++.+.+.++..+||++||+|..+..+++.  +++|+|+|.+++|++.|+++++.++ ++.++++++.++... 
T Consensus         9 pVll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~-   87 (192)
T d1m6ya2           9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL-   87 (192)
T ss_dssp             CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH-
T ss_pred             chHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH-
Confidence            456777888999999999999999999999999886  6799999999999999999998764 899999999886531 


Q ss_pred             hhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       204 ~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                           +.. .....+|.|+.++..+
T Consensus        88 -----~~~-~~~~~vdgIl~DlGvS  106 (192)
T d1m6ya2          88 -----LKT-LGIEKVDGILMDLGVS  106 (192)
T ss_dssp             -----HHH-TTCSCEEEEEEECSCC
T ss_pred             -----HHH-cCCCCcceeeeccchh
Confidence                 111 3457899999997763

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.98  E-value=4.1e-10  Score=93.99  Aligned_cols=86  Identities=21%  Similarity=0.306  Sum_probs=70.7

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~  200 (285)
                      +|++.+++.|++.+...++.+|||.|||+|.+...+.+.   ..+++|+|+++.++..+       .+..++++|.....
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~   74 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE   74 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc
Confidence            578999999999999999999999999999998887764   46899999998654332       25678889987763


Q ss_pred             chhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                                   ....||.+++||||..
T Consensus        75 -------------~~~~fd~ii~npP~~~   90 (223)
T d2ih2a1          75 -------------PGEAFDLILGNPPYGI   90 (223)
T ss_dssp             -------------CSSCEEEEEECCCCCC
T ss_pred             -------------cccccceecccCcccc
Confidence                         3467999999999853

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.95  E-value=1.3e-09  Score=93.48  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=67.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (285)
                      ...++..+...+..+|||||||+|.++..++++  +.+++++|+ +++++.+++++...   ++++++.+|+.+.     
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-----  142 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-----  142 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-----
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-----
Confidence            345667777777889999999999999999987  578999998 67999999988755   4899999998763     


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                               .+..||+|+++--++
T Consensus       143 ---------~~~~~D~v~~~~vlh  157 (253)
T d1tw3a2         143 ---------LPRKADAIILSFVLL  157 (253)
T ss_dssp             ---------CSSCEEEEEEESCGG
T ss_pred             ---------cccchhheeeccccc
Confidence                     235689998875543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.6e-09  Score=99.08  Aligned_cols=91  Identities=15%  Similarity=0.266  Sum_probs=69.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcC-----------CCeEE
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI-----------DQLKV  191 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~-----------~~v~~  191 (285)
                      +.+..+..|++.+.+++++++||||||+|..+..+|.. + .+|+|||+++.+++.|+++.+..           +.+.+
T Consensus       200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            56888999999999999999999999999999999986 5 48999999999999999887531           23343


Q ss_pred             -EEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240          192 -LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (285)
Q Consensus       192 -~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n  224 (285)
                       ..+|+.+.+..+.         .-..+|+|+.|
T Consensus       280 ~~~~~f~~~~~~d~---------~~~~adVV~in  304 (406)
T d1u2za_         280 SLKKSFVDNNRVAE---------LIPQCDVILVN  304 (406)
T ss_dssp             EESSCSTTCHHHHH---------HGGGCSEEEEC
T ss_pred             eeeechhhcccccc---------ccccceEEEEe
Confidence             4566655443221         12346888876

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=8.6e-09  Score=86.38  Aligned_cols=96  Identities=14%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (285)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~  198 (285)
                      ..++..+.+...+...++++|||||||+|++|++||+.   +++|+++|+++++++.|+++++..+   +|+++.||+.+
T Consensus        40 i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          40 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD  119 (214)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc
Confidence            44555555555555557889999999999999999975   6799999999999999999987654   79999999987


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      .-..     +.+ ......||+|+.+-.
T Consensus       120 ~l~~-----l~~-~~~~~~~D~ifiD~~  141 (214)
T d2cl5a1         120 LIPQ-----LKK-KYDVDTLDMVFLDHW  141 (214)
T ss_dssp             HGGG-----HHH-HSCCCCEEEEEECSC
T ss_pred             cccc-----hhh-cccccccceeeeccc
Confidence            5211     110 024467999999744

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.9e-09  Score=93.39  Aligned_cols=85  Identities=16%  Similarity=0.171  Sum_probs=54.7

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--------CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNA--------GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--------~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ..+|||||||+|.++..++..        +.+++|||+|+.|++.|++++....++..+..++...+..+...+... ..
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  119 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE-KK  119 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT-SS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc-cC
Confidence            347999999999998887653        237899999999999999998765433222223322222111111110 03


Q ss_pred             CCCCceEEEEcCCC
Q 023240          214 SSSGFAKVVANIPF  227 (285)
Q Consensus       214 ~~~~~D~Vv~n~P~  227 (285)
                      ..+.||+|++.-.+
T Consensus       120 ~~~~fD~I~~~~~l  133 (280)
T d1jqea_         120 ELQKWDFIHMIQML  133 (280)
T ss_dssp             SCCCEEEEEEESCG
T ss_pred             CCCceeEEEEccce
Confidence            56789999997554

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.6e-08  Score=95.53  Aligned_cols=102  Identities=14%  Similarity=0.090  Sum_probs=73.8

Q ss_pred             CccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--------------------CCEEEEEeCCHH
Q 023240          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--------------------GATVLAIEKDQH  174 (285)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--------------------~~~V~giD~~~~  174 (285)
                      .++..|+ |+|+..+++.|++.+.+.++.+|+|..||+|.+...+.+.                    ...++|+|+++.
T Consensus       139 ~~~~~Gq-fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~  217 (524)
T d2ar0a1         139 TKSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  217 (524)
T ss_dssp             ------C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             hccccch-hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHH
Confidence            3445577 9999999999999999998999999999999998766542                    125899999999


Q ss_pred             HHHHHHHHhhcCC-C------eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240          175 MVGLVRERFASID-Q------LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       175 ~v~~a~~~~~~~~-~------v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +...|+.++--.+ .      -.+..+|....+.           ....+||+|++||||.
T Consensus       218 ~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~-----------~~~~kfD~Ii~NPPfg  267 (524)
T d2ar0a1         218 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-----------ENLPKAHIVATNPPFG  267 (524)
T ss_dssp             HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHH-----------HTSCCEEEEEECCCCT
T ss_pred             HHHHHHHHHHhhcccccccccchhhhhhhhhhcc-----------cccccceeEEecCCcc
Confidence            9999998875432 1      1233333332211           2456799999999995

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.72  E-value=2.1e-08  Score=86.08  Aligned_cols=84  Identities=21%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhh
Q 023240          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (285)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (285)
                      ...+++.++..+..+|||||||+|.++..++++  +.+++++|+ +++++.++++++..   +++.++.+|+.+.     
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-----  143 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-----  143 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-----
Confidence            345566666677789999999999999999998  679999997 78999999888754   4799999998762     


Q ss_pred             hhhHHhhhcCCCCceEEEEcCCCC
Q 023240          205 MLSLFERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       205 ~~d~~~~~~~~~~~D~Vv~n~P~~  228 (285)
                               .+..+|+|+..--++
T Consensus       144 ---------~p~~~D~v~~~~vLh  158 (256)
T d1qzza2         144 ---------LPVTADVVLLSFVLL  158 (256)
T ss_dssp             ---------CSCCEEEEEEESCGG
T ss_pred             ---------ccccchhhhcccccc
Confidence                     124589887764443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1e-07  Score=80.60  Aligned_cols=47  Identities=11%  Similarity=0.136  Sum_probs=40.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI  186 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~  186 (285)
                      .++.+|||||||+|..+..++..+. +|+|+|+|+.+++.|+++++..
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~   97 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE   97 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhc
Confidence            3567999999999999888877654 7999999999999999998754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=7.9e-07  Score=72.24  Aligned_cols=91  Identities=15%  Similarity=0.270  Sum_probs=74.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhH
Q 023240          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      +++.+++.+.+.++..++|..+|.|..+..+.+.+++|+|+|+++++++.|++..  .+++.++++++.++.-      .
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~--~~~~~~~~~~f~~~~~------~   77 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH--LPGLTVVQGNFRHLKR------H   77 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--CTTEEEEESCGGGHHH------H
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc--ccceeEeehHHHHHHH------H
Confidence            4667788888999999999999999999999998889999999999999998753  3589999999887642      1


Q ss_pred             HhhhcCCCCceEEEEcCCCC
Q 023240          209 FERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~  228 (285)
                      +.. .....+|.|+.++-+.
T Consensus        78 l~~-~~~~~vdgIl~DLGvS   96 (182)
T d1wg8a2          78 LAA-LGVERVDGILADLGVS   96 (182)
T ss_dssp             HHH-TTCSCEEEEEEECSCC
T ss_pred             HHH-cCCCccCEEEEEccCC
Confidence            111 2346799999988653

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.4e-06  Score=75.90  Aligned_cols=86  Identities=14%  Similarity=0.150  Sum_probs=71.6

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhh
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML  206 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~  206 (285)
                      .....+.+.++.+|||++||.|.=|..+|..   ...|+++|+++..++.++++++..+  ++.+...|+..+...+   
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~---  161 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD---  161 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC---
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc---
Confidence            3555677888999999999999998888875   5689999999999999999998775  8999999998875322   


Q ss_pred             hHHhhhcCCCCceEEEEcCC
Q 023240          207 SLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       207 d~~~~~~~~~~~D~Vv~n~P  226 (285)
                            .....||.|+.++|
T Consensus       162 ------~~~~~fD~VL~DaP  175 (293)
T d2b9ea1         162 ------PRYHEVHYILLDPS  175 (293)
T ss_dssp             ------GGGTTEEEEEECCC
T ss_pred             ------cccceeeEEeecCc
Confidence                  22367999999988

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.29  E-value=5.5e-07  Score=76.63  Aligned_cols=76  Identities=17%  Similarity=0.207  Sum_probs=62.3

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-----------CCeEEEEcccccccchhhhhhHHh
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFVKCHIRSHMLSLFE  210 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-----------~~v~~~~gD~~~~~~~~~~~d~~~  210 (285)
                      +.+|||.-||.|.-+..+|..|++|+++|.++.....++..++..           .+++++++|+.++-.         
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~---------  159 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT---------  159 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST---------
T ss_pred             CCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHh---------
Confidence            358999999999999999999999999999999887777655421           278999999887632         


Q ss_pred             hhcCCCCceEEEEcCCCC
Q 023240          211 RRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       211 ~~~~~~~~D~Vv~n~P~~  228 (285)
                        .....||+|+.+|+|.
T Consensus       160 --~~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         160 --DITPRPQVVYLDPMFP  175 (250)
T ss_dssp             --TCSSCCSEEEECCCCC
T ss_pred             --ccCCCCCEEEECCCCc
Confidence              2245689999999995

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.21  E-value=3.2e-06  Score=71.14  Aligned_cols=118  Identities=13%  Similarity=0.185  Sum_probs=74.0

Q ss_pred             ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHhhcCCCe
Q 023240          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFASIDQL  189 (285)
Q Consensus       116 ~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~V~giD~~~~~v~~a~~~~~~~~~v  189 (285)
                      -.|.|...+-.|.-+..+.+.+...++++|||||++.|.+++.++..      .++|+|+|+++........   ...++
T Consensus        55 ~~w~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---~~~~I  131 (232)
T d2bm8a1          55 YQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---DMENI  131 (232)
T ss_dssp             CEETTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---GCTTE
T ss_pred             ccccceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---cccce
Confidence            34667755555665555555554446789999999999999887742      4799999998754433222   22589


Q ss_pred             EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHH----HHHhccCCCce
Q 023240          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV----IKQLLPMGDIF  244 (285)
Q Consensus       190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i----~~~l~~~g~~~  244 (285)
                      +++.||..+......        .....+|.||.+-........    +..++..|+.+
T Consensus       132 ~~i~gDs~~~~~~~~--------l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~i  182 (232)
T d2bm8a1         132 TLHQGDCSDLTTFEH--------LREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYF  182 (232)
T ss_dssp             EEEECCSSCSGGGGG--------GSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEE
T ss_pred             eeeecccccHHHHHH--------HHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEE
Confidence            999999876543221        233456777776553332211    22455666644

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.9e-06  Score=73.68  Aligned_cols=46  Identities=9%  Similarity=0.047  Sum_probs=38.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhc
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      .++.+|||||||+|.+++..+.. ..+|+|+|+++.|++.+++++.+
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            35789999999999887655544 66899999999999999988764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=2.5e-06  Score=74.94  Aligned_cols=76  Identities=14%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEEcccccccchhhhhhHH
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      ...+++||.||.|.|..+..+++.  ..+|++||++++.++.|++.+..       .++++++.+|+.+.--        
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~--------  146 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE--------  146 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH--------
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhh--------
Confidence            346789999999999999998876  46999999999999999988632       3589999999988631        


Q ss_pred             hhhcCCCCceEEEEcC
Q 023240          210 ERRKSSSGFAKVVANI  225 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~  225 (285)
                         .....||+||.++
T Consensus       147 ---~~~~~yDvIi~D~  159 (312)
T d1uira_         147 ---RTEERYDVVIIDL  159 (312)
T ss_dssp             ---HCCCCEEEEEEEC
T ss_pred             ---hcCCcccEEEEeC
Confidence               2456799999875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.13  E-value=2.8e-06  Score=73.31  Aligned_cols=77  Identities=21%  Similarity=0.280  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhc------------CCCeEEEEcccccccchhhh
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS------------IDQLKVLQEDFVKCHIRSHM  205 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~------------~~~v~~~~gD~~~~~~~~~~  205 (285)
                      ..++++||.||.|.|..+..+++. ..+|+.||+|+..++.|++.+..            .++++++.+|+.+.-     
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-----  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-----  144 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-----
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-----
Confidence            346789999999999999888776 45899999999999999986632            258999999998652     


Q ss_pred             hhHHhhhcCCCCceEEEEcCCC
Q 023240          206 LSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       206 ~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                             ....+||+||.+++-
T Consensus       145 -------~~~~~yDvIi~D~~~  159 (276)
T d1mjfa_         145 -------KNNRGFDVIIADSTD  159 (276)
T ss_dssp             -------HHCCCEEEEEEECCC
T ss_pred             -------hccCCCCEEEEeCCC
Confidence                   234679999997553

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.03  E-value=1.1e-05  Score=70.80  Aligned_cols=92  Identities=14%  Similarity=0.259  Sum_probs=74.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~  197 (285)
                      +..+....-.....+.+.+|++|||++||.|.=|..++..   .+.++++|+++..+..++++++..+  ++.+...|..
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~  177 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL  177 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG
T ss_pred             EEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccc
Confidence            4444444555666778889999999999999988888875   4689999999999999999888654  7888888887


Q ss_pred             cccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          198 KCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      ..+            .....||.|+.++|
T Consensus       178 ~~~------------~~~~~fD~ILvDaP  194 (313)
T d1ixka_         178 HIG------------ELNVEFDKILLDAP  194 (313)
T ss_dssp             GGG------------GGCCCEEEEEEECC
T ss_pred             ccc------------cccccccEEEEccc
Confidence            765            24577999999988

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=1.1e-05  Score=70.09  Aligned_cols=76  Identities=16%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+++||-||.|.|..+..+++.  ..+|++||+|+..++.|++.+..      .++++++.+|+.+.--          
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~----------  157 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----------  157 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----------
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh----------
Confidence            35789999999999999999886  36899999999999999987642      3589999999987632          


Q ss_pred             hcCCCCceEEEEcCC
Q 023240          212 RKSSSGFAKVVANIP  226 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P  226 (285)
                       .....||+||.+++
T Consensus       158 -~~~~~yDvIi~D~~  171 (295)
T d1inla_         158 -KFKNEFDVIIIDST  171 (295)
T ss_dssp             -GCSSCEEEEEEEC-
T ss_pred             -cCCCCCCEEEEcCC
Confidence             34567999998753

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=1.9e-05  Score=65.14  Aligned_cols=81  Identities=17%  Similarity=0.291  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++.+|+|+|||.|.-++.+|-.  ..+++.+|.+..-+..++.-....  .|++++++++++..             ...
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-------------~~~  131 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-------------SEP  131 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-------------CCS
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-------------ccc
Confidence            5679999999999999888865  679999999999988888776654  48999999999874             345


Q ss_pred             CceEEEEcCCCCCcHHHHH
Q 023240          217 GFAKVVANIPFNISTDVIK  235 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~~i~~  235 (285)
                      .||+|++- .+.....++.
T Consensus       132 ~fD~V~sR-A~~~~~~ll~  149 (207)
T d1jsxa_         132 PFDGVISR-AFASLNDMVS  149 (207)
T ss_dssp             CEEEEECS-CSSSHHHHHH
T ss_pred             ccceehhh-hhcCHHHHHH
Confidence            78998873 2333344444

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.89  E-value=1.9e-05  Score=67.92  Aligned_cols=76  Identities=16%  Similarity=0.236  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+++||-||-|.|..+..+.+.  ..+|+.||+|++.++.|++.+..      .++++++.+|+...--          
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~----------  143 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA----------  143 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH----------
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh----------
Confidence            35789999999999999999886  36999999999999999988632      3589999999987531          


Q ss_pred             hcCCCCceEEEEcCC
Q 023240          212 RKSSSGFAKVVANIP  226 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P  226 (285)
                       ....+||+|+.+++
T Consensus       144 -~~~~~yDvIi~D~~  157 (274)
T d1iy9a_         144 -KSENQYDVIMVDST  157 (274)
T ss_dssp             -TCCSCEEEEEESCS
T ss_pred             -hcCCCCCEEEEcCC
Confidence             34567999999754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=2.2e-05  Score=67.80  Aligned_cols=94  Identities=15%  Similarity=0.233  Sum_probs=71.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccc
Q 023240          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (285)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~  198 (285)
                      +..+.......+..+.+.++.+|||+++|.|.=|..++..  .+.|+++|+++..+..++++++..+  ++.+...|...
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~  163 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  163 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             EEeccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence            4444445555666788889999999999999999988876  4689999999999999999998775  45554444433


Q ss_pred             ccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (285)
Q Consensus       199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~  227 (285)
                      ...           .....||.|+.++|=
T Consensus       164 ~~~-----------~~~~~fd~IL~DaPC  181 (284)
T d1sqga2         164 SQW-----------CGEQQFDRILLDAPC  181 (284)
T ss_dssp             HHH-----------HTTCCEEEEEEECCC
T ss_pred             chh-----------cccccccEEEEeccc
Confidence            221           345679999999883

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.84  E-value=3.9e-05  Score=68.73  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCC-----------------CeEEEEcccccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID-----------------QLKVLQEDFVKCHI  201 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~-----------------~v~~~~gD~~~~~~  201 (285)
                      ++.+|||..||+|..++..|.. + .+|++.|+|+.+++.+++|++.++                 ++.+.+.|+.....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            5779999999999999977664 4 489999999999999999987542                 24555666654432


Q ss_pred             hhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHH
Q 023240          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (285)
Q Consensus       202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~  236 (285)
                                 .....||+|..+| |.-+.++++.
T Consensus       125 -----------~~~~~fDvIDiDP-fGs~~pflds  147 (375)
T d2dula1         125 -----------ERHRYFHFIDLDP-FGSPMEFLDT  147 (375)
T ss_dssp             -----------HSTTCEEEEEECC-SSCCHHHHHH
T ss_pred             -----------hhcCcCCcccCCC-CCCcHHHHHH
Confidence                       3456799999996 8888888763

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.7e-05  Score=67.24  Aligned_cols=76  Identities=17%  Similarity=0.270  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhh------cCCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~------~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+++||-||-|.|..+..+.+.  ..+|+.+|++++.++.|++.+.      ..++++++.+|+.+.--          
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~----------  146 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK----------  146 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----------
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh----------
Confidence            45789999999999999999886  4699999999999999998764      23699999999987531          


Q ss_pred             hcCCCCceEEEEcCC
Q 023240          212 RKSSSGFAKVVANIP  226 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P  226 (285)
                       ....+||+||.+++
T Consensus       147 -~~~~~yDvIi~D~~  160 (285)
T d2o07a1         147 -QNQDAFDVIITDSS  160 (285)
T ss_dssp             -TCSSCEEEEEEECC
T ss_pred             -cCCCCCCEEEEcCC
Confidence             24568999999854

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.80  E-value=2.6e-05  Score=68.13  Aligned_cols=76  Identities=17%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+++||-||-|.|..+..+.+..  .+|+.||++++.++.|++.+..      .++++++.+|+.+.--          
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~----------  174 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK----------  174 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH----------
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH----------
Confidence            457899999999999999998863  6899999999999999998743      2589999999987531          


Q ss_pred             hcCCCCceEEEEcCC
Q 023240          212 RKSSSGFAKVVANIP  226 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P  226 (285)
                       .....||+||.+++
T Consensus       175 -~~~~~yDvII~D~~  188 (312)
T d2b2ca1         175 -NHKNEFDVIITDSS  188 (312)
T ss_dssp             -HCTTCEEEEEECCC
T ss_pred             -hCCCCCCEEEEcCC
Confidence             34578999999754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.76  E-value=8.6e-06  Score=69.04  Aligned_cols=86  Identities=15%  Similarity=0.112  Sum_probs=59.5

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh------------------------------------------CCEEEEEeCCHH
Q 023240          137 AAVQEGDIVLEIGPGTGSLTNVLLNA------------------------------------------GATVLAIEKDQH  174 (285)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~------------------------------------------~~~V~giD~~~~  174 (285)
                      .....+..++|.-||+|++.+..|..                                          ...++|.|+++.
T Consensus        46 ~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~  125 (249)
T d1o9ga_          46 LPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLE  125 (249)
T ss_dssp             SSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             hcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHH
Confidence            34445567999999999998765431                                          024678888888


Q ss_pred             HHHHHH---HHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240          175 MVGLVR---ERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (285)
Q Consensus       175 ~v~~a~---~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~  229 (285)
                      +++.|+   .|++..+   .+.+...|+.+.....   ++    ..+....+||+||||..
T Consensus       126 ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~---~~----~~~~~~GlIVtNPPYGE  179 (249)
T d1o9ga_         126 AAQAARRLRERLTAEGGALPCAIRTADVFDPRALS---AV----LAGSAPDVVLTDLPYGE  179 (249)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHH---HH----HTTCCCSEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCCceeeeeecchhccCcch---hc----cCCCCCCEEEeCCCccc
Confidence            888884   5665443   6889999987654211   01    23456799999999963

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.71  E-value=6.3e-05  Score=65.05  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhh------cCCCeEEEEcccccccchhhhhhHHhh
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~------~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      ..+++||=||-|.|..+..+.+. . .+|+.||+|++.++.+++.+.      ..++++++.+|+.+.-..         
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~---------  149 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN---------  149 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT---------
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh---------
Confidence            35789999999999999999886 3 589999999999999998763      236999999999775311         


Q ss_pred             hcCCCCceEEEEcCC
Q 023240          212 RKSSSGFAKVVANIP  226 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P  226 (285)
                       ...+.||+||.+++
T Consensus       150 -~~~~~yDvIi~D~~  163 (290)
T d1xj5a_         150 -AAEGSYDAVIVDSS  163 (290)
T ss_dssp             -SCTTCEEEEEECCC
T ss_pred             -ccccCccEEEEcCC
Confidence             23468999999754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.53  E-value=0.00014  Score=60.50  Aligned_cols=60  Identities=15%  Similarity=0.223  Sum_probs=53.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~  184 (285)
                      ..+.++++++++... .+|+.|||..||+|..+.+..+.+.+.+|+|++++.++.|+++++
T Consensus       196 ~kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            355788888888875 468899999999999999988889999999999999999999875

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.44  E-value=0.00045  Score=57.91  Aligned_cols=64  Identities=6%  Similarity=0.202  Sum_probs=47.1

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc
Q 023240          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (285)
Q Consensus       130 ~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~  198 (285)
                      ...+++.+. .....+|||||||+|.++..++++  +.+++..|+ ++.++    .....++++++.+|+.+
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~----~~~~~~ri~~~~gd~~~  135 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE----NAPPLSGIEHVGGDMFA  135 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT----TCCCCTTEEEEECCTTT
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh----ccCCCCCeEEecCCccc
Confidence            445566565 345579999999999999999987  678999997 33332    22223589999999875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00028  Score=56.50  Aligned_cols=76  Identities=18%  Similarity=0.295  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++.+|||+||+.|..+..+++.   ...|+++|+.+         .+..+++.++.+|+.+..........    ....
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~i~~~~~~~~d~~~~~~~~~~~~~----~~~~   87 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPIVGVDFLQGDFRDELVMKALLER----VGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCCTTEEEEESCTTSHHHHHHHHHH----HTTC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccccCCceEeecccccchhhhhhhhh----ccCc
Confidence            46789999999999999988875   36899999764         22335899999999875433222221    3557


Q ss_pred             CceEEEEcCCCC
Q 023240          217 GFAKVVANIPFN  228 (285)
Q Consensus       217 ~~D~Vv~n~P~~  228 (285)
                      .+|+|+++....
T Consensus        88 ~~DlVlSD~ap~   99 (180)
T d1ej0a_          88 KVQVVMSDMAPN   99 (180)
T ss_dssp             CEEEEEECCCCC
T ss_pred             ceeEEEecccch
Confidence            899999995543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.43  E-value=0.00028  Score=60.48  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=56.5

Q ss_pred             EEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv  222 (285)
                      +|+|+.||.|.++..+.+.|.+ +.++|+++.+++..+.|+.    -.++.+|+.++...           .-+..|+++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----~~~~~~Di~~~~~~-----------~~~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSD-----------EFPKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----SEEEESCTTTSCGG-----------GSCCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCCccCChhhCCHh-----------HcccccEEe
Confidence            6999999999999998888876 5599999999999888873    46688999988642           335689999


Q ss_pred             EcCC
Q 023240          223 ANIP  226 (285)
Q Consensus       223 ~n~P  226 (285)
                      +.||
T Consensus        67 ~g~P   70 (324)
T d1dcta_          67 GGPP   70 (324)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            9988

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.41  E-value=0.00012  Score=61.52  Aligned_cols=75  Identities=9%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .+.+|+|||+|.|.-++.+|-.  +.+++.+|.+..-+...+.-....  .|+.++++.++++....         ....
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~---------~~~~  140 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRK---------DVRE  140 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCT---------TTTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccc---------cccc
Confidence            4679999999999999888864  679999999998888777665543  48999999998764311         1235


Q ss_pred             CceEEEEc
Q 023240          217 GFAKVVAN  224 (285)
Q Consensus       217 ~~D~Vv~n  224 (285)
                      .||+|++=
T Consensus       141 ~~D~v~sR  148 (239)
T d1xdza_         141 SYDIVTAR  148 (239)
T ss_dssp             CEEEEEEE
T ss_pred             cceEEEEh
Confidence            78999883

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.36  E-value=0.00019  Score=61.46  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=54.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~  185 (285)
                      ..+..+++++++.... +++.|||..||+|..+.+....|.+.+|+|+++++++.|++++..
T Consensus       234 ~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         234 RFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            4567888888887754 688999999999999999888899999999999999999999864

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.29  E-value=0.0008  Score=54.16  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCcccHH----HHHHHHh------CCEEEEEeCCHHHHHHHHHH
Q 023240          141 EGDIVLEIGPGTGSL----TNVLLNA------GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~----t~~la~~------~~~V~giD~~~~~v~~a~~~  182 (285)
                      ++-+||++|||+|.-    ++.+.+.      ..+|+|.|+|+.+++.|+..
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            345899999999983    3333332      13799999999999999843

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.23  E-value=0.00039  Score=58.35  Aligned_cols=62  Identities=15%  Similarity=0.284  Sum_probs=54.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC
Q 023240          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI  186 (285)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~  186 (285)
                      ..+.++..++++... .+|+.|||..||+|..+.+....+.+.+|+|+++..++.|++++...
T Consensus       191 ~kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         191 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            456778888888775 47889999999999999998888999999999999999999998743

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.10  E-value=0.00096  Score=57.47  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .+-+|||+.||.|.++..+.+.|.+ |.++|+++.+++..+.|+..     ..++|+.++...           ....+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~-----~~~~Di~~~~~~-----------~~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-----KPEGDITQVNEK-----------TIPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC-----CCBSCGGGSCGG-----------GSCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC-----CCcCchhcCchh-----------hcceee
Confidence            4679999999999999999888875 56699999999999999843     235888887542           335689


Q ss_pred             EEEEcCC
Q 023240          220 KVVANIP  226 (285)
Q Consensus       220 ~Vv~n~P  226 (285)
                      ++++.||
T Consensus        74 ll~ggpP   80 (327)
T d2c7pa1          74 ILCAGFP   80 (327)
T ss_dssp             EEEEECC
T ss_pred             eeecccc
Confidence            9999988

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.05  E-value=0.0011  Score=55.50  Aligned_cols=53  Identities=13%  Similarity=0.365  Sum_probs=41.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~  198 (285)
                      ...+|||||||+|.++..++++  +.+++..|+ ++.++.+    ...++++++.+|+.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~~~rv~~~~gD~f~  134 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SGSNNLTYVGGDMFT  134 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CCBTTEEEEECCTTT
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cccCceEEEecCccc
Confidence            3468999999999999999987  679999997 3343322    233699999999976

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00039  Score=60.12  Aligned_cols=73  Identities=18%  Similarity=0.243  Sum_probs=57.9

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCC--E-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          142 GDIVLEIGPGTGSLTNVLLNAGA--T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~--~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +-+|+|+.||.|.++..+...|.  + |.++|+++.+++..+.|+   ++..++.+|+.++...+         ......
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~---~~~~~~~~di~~~~~~~---------~~~~~~   69 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEE---------FDRLSF   69 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHH---------HHHHCC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC---CCCCcccCchhhCCHhH---------cCCCCc
Confidence            45899999999999988877774  3 679999999999999886   46778889998876432         122367


Q ss_pred             eEEEEcCC
Q 023240          219 AKVVANIP  226 (285)
Q Consensus       219 D~Vv~n~P  226 (285)
                      |++++.||
T Consensus        70 Dll~ggpP   77 (343)
T d1g55a_          70 DMILMSPP   77 (343)
T ss_dssp             SEEEECCC
T ss_pred             cEEEeecc
Confidence            99999988

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.94  E-value=0.0018  Score=53.94  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=45.8

Q ss_pred             HHHHHHhcCCC-CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc
Q 023240          131 DQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (285)
Q Consensus       131 ~~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~  198 (285)
                      ..++......+ ..+|||||||+|.++..++++  +.+++..|+-+. ++    .....++++++.+|+.+
T Consensus        70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~----~~~~~~r~~~~~~d~~~  135 (243)
T d1kyza2          70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE----DAPSYPGVEHVGGDMFV  135 (243)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT----TCCCCTTEEEEECCTTT
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh----hcccCCceEEecccccc
Confidence            34455444433 578999999999999999987  679999998542 22    22223589999999865

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.80  E-value=0.011  Score=45.61  Aligned_cols=51  Identities=27%  Similarity=0.395  Sum_probs=42.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      ..++..+++++++||=+||| .|.++..+++. |++|+++|.+++.++.|++.
T Consensus        17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            34566778889999999998 66677777765 88999999999999999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0056  Score=47.55  Aligned_cols=51  Identities=20%  Similarity=0.219  Sum_probs=42.1

Q ss_pred             HHHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      ..+....++++++||-+|+| .|.++..+++. |++|+++|.+++.++.|++.
T Consensus        18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             HHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            34455677889999999998 67777777765 89999999999999998875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.12  E-value=0.026  Score=43.96  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=65.0

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~  208 (285)
                      ..++...++++++||=+|||. |.++..+++. |+ +|+++|.+++..+.|++.    +-..++.-  .+.+..    +.
T Consensus        18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~~~i~~--~~~~~~----~~   87 (174)
T d1jqba2          18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GATDILNY--KNGHIE----DQ   87 (174)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCSEEECG--GGSCHH----HH
T ss_pred             HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cccccccc--cchhHH----HH
Confidence            445677888999999999986 7788888886 65 799999999999999865    22223322  222211    22


Q ss_pred             HhhhcCCCCceEEEEcCCCCCc-HHHHHHhccCCCc
Q 023240          209 FERRKSSSGFAKVVANIPFNIS-TDVIKQLLPMGDI  243 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~~g~~  243 (285)
                      +.+......+|+||-....... ...++.+.++|.+
T Consensus        88 v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~i  123 (174)
T d1jqba2          88 VMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGII  123 (174)
T ss_dssp             HHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             HHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEE
Confidence            2222445569999987665433 4445555444433

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.09  E-value=0.018  Score=44.97  Aligned_cols=100  Identities=16%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             HhcCCCCCEEEEEcCc-ccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      ..++++|++||=+||| .|.++..+++. |+ +|+++|.+++.++.|++.    +--.++  |..+.+..+.. +.+...
T Consensus        23 ~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~vi--~~~~~~~~~~~-~~i~~~   95 (182)
T d1vj0a2          23 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GADLTL--NRRETSVEERR-KAIMDI   95 (182)
T ss_dssp             CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCSEEE--ETTTSCHHHHH-HHHHHH
T ss_pred             HhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cceEEE--eccccchHHHH-HHHHHh
Confidence            3456789999999998 36777777776 76 899999999999999764    211222  22222211111 111111


Q ss_pred             cCCCCceEEEEcCCCCC-cHHHHHHhccCCC
Q 023240          213 KSSSGFAKVVANIPFNI-STDVIKQLLPMGD  242 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~-~~~i~~~l~~~g~  242 (285)
                      .....+|+||-...-.. ....++.+.++|.
T Consensus        96 ~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~  126 (182)
T d1vj0a2          96 THGRGADFILEATGDSRALLEGSELLRRGGF  126 (182)
T ss_dssp             TTTSCEEEEEECSSCTTHHHHHHHHEEEEEE
T ss_pred             hCCCCceEEeecCCchhHHHHHHHHhcCCCE
Confidence            34556899987654332 2344555555444

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.02  E-value=0.031  Score=44.44  Aligned_cols=50  Identities=22%  Similarity=0.264  Sum_probs=41.2

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-G-ATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~  182 (285)
                      .++...++++++||-+|||. |.++..+++. + .+|+++|.+++.++.|++.
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            45667888999999999998 5567777765 5 4899999999999999876

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.87  E-value=0.019  Score=47.91  Aligned_cols=83  Identities=13%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+...+.+.++..|+.+..--...++.+.  ...+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   82 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTI--AKHGK   82 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            57889999977664   34556667999999999999999888888766788899999887643333333332  23367


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        83 iD~lVnnA   90 (268)
T d2bgka1          83 LDIMFGNV   90 (268)
T ss_dssp             CCEEEECC
T ss_pred             cceecccc
Confidence            89999863

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.027  Score=46.47  Aligned_cols=84  Identities=13%  Similarity=0.152  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      .|+.+|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+... +++..+.+|..+..-....++.+.  ...+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~--~~~g   83 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVK--AEIG   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence            57889988988776   66777788999999999999998888887654 488999999988764444444443  2456


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|--
T Consensus        84 ~idilinnag   93 (244)
T d1yb1a_          84 DVSILVNNAG   93 (244)
T ss_dssp             CCSEEEECCC
T ss_pred             CCceeEeecc
Confidence            7899998844

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.76  E-value=0.013  Score=43.49  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             EEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      +|+=+|  .|.++..+++    .|.+|+.||.|++.++.++..+    ++.++.||+.+....       +. ..-...|
T Consensus         2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l-------~~-~~i~~a~   67 (132)
T d1lssa_           2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTL-------ED-AGIEDAD   67 (132)
T ss_dssp             EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHH-------HH-TTTTTCS
T ss_pred             EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchhhh-------hh-cChhhhh
Confidence            344445  5777776665    3789999999999999887654    578999999886532       11 2335578


Q ss_pred             EEEEcCCC
Q 023240          220 KVVANIPF  227 (285)
Q Consensus       220 ~Vv~n~P~  227 (285)
                      .+++-.+.
T Consensus        68 ~vv~~t~~   75 (132)
T d1lssa_          68 MYIAVTGK   75 (132)
T ss_dssp             EEEECCSC
T ss_pred             hhcccCCc
Confidence            87774443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.68  E-value=0.047  Score=45.23  Aligned_cols=85  Identities=15%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.++++++.++.+.+.+... .++.++..|+.+..-.+..++.+.+ ...+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH-VFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-HTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH-HhCC
Confidence            58899999987663   45566777999999999999888888777655 4788899999886544444433332 2235


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|+++.|..
T Consensus        84 ~idilinnag   93 (258)
T d1ae1a_          84 KLNILVNNAG   93 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CcEEEecccc
Confidence            6888888743

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.014  Score=45.29  Aligned_cols=98  Identities=16%  Similarity=0.210  Sum_probs=59.4

Q ss_pred             HHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       135 ~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +..+++++++||=.|+  |.|..+..+++. |++|++++.+++..+.+++.    +--.++  |..+.++.+    .+..
T Consensus        22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~vi--~~~~~~~~~----~i~~   91 (174)
T d1yb5a2          22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAHEVF--NHREVNYID----KIKK   91 (174)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSEEE--ETTSTTHHH----HHHH
T ss_pred             HHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc----Cccccc--ccccccHHH----Hhhh
Confidence            4456778999999996  567778888876 89999999999888888764    222233  222222211    1211


Q ss_pred             hcCCCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      ......+|+|+....-......++.+.++|.
T Consensus        92 ~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~  122 (174)
T d1yb5a2          92 YVGEKGIDIIIEMLANVNLSKDLSLLSHGGR  122 (174)
T ss_dssp             HHCTTCEEEEEESCHHHHHHHHHHHEEEEEE
T ss_pred             hhccCCceEEeecccHHHHHHHHhccCCCCE
Confidence            1456678999875432222333444444443

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.62  E-value=0.0061  Score=50.80  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=31.8

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeC
Q 023240          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEK  171 (285)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~  171 (285)
                      ..+.+...+.+..+|+|+|||.|..+..++..  ...|.|+++
T Consensus        56 ~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          56 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            44555555567789999999999999999876  357888886

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.035  Score=46.04  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +++.+|=.|++.|.   ++..+++.|++|+..+++++.++.+.+.+...   +++..+.+|+.+..-....++.+.+  .
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~--~   86 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS--Q   86 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH--h
Confidence            57899999988765   45566667999999999999988887776643   3678889999876433334444432  3


Q ss_pred             CCCceEEEEcCCC
Q 023240          215 SSGFAKVVANIPF  227 (285)
Q Consensus       215 ~~~~D~Vv~n~P~  227 (285)
                      -+..|++|.|...
T Consensus        87 ~g~iD~lVnnAg~   99 (257)
T d1xg5a_          87 HSGVDICINNAGL   99 (257)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             cCCCCEEEecccc
Confidence            4678999988543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.42  E-value=0.028  Score=46.41  Aligned_cols=83  Identities=16%  Similarity=0.264  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|.+.|.   ++..+++.|++|+.+|++++.++.+.+.+...+++.++.+|+.+..-....++.+.+  .-+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~G~   82 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEK--AFGP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH--HHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHH--HhCC
Confidence            57888888876654   455666679999999999999998888876656899999999886544444443322  3367


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        83 iDiLVnnA   90 (251)
T d1zk4a1          83 VSTLVNNA   90 (251)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            89999874

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.41  E-value=0.047  Score=45.03  Aligned_cols=84  Identities=19%  Similarity=0.243  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++.+|=-|.+.|.   ++..+++.|++|+.+|++++.++.+.+.++..+ ++..+.+|+.+..-....++.+.  ..-+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL--TEHK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HhcC
Confidence            57788888876552   334445558999999999999998888887654 88999999988654433444333  3456


Q ss_pred             CceEEEEcCC
Q 023240          217 GFAKVVANIP  226 (285)
Q Consensus       217 ~~D~Vv~n~P  226 (285)
                      ..|++|.|..
T Consensus        87 ~iDilvnnag   96 (251)
T d2c07a1          87 NVDILVNNAG   96 (251)
T ss_dssp             CCCEEEECCC
T ss_pred             Cceeeeeccc
Confidence            7899998854

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.05  Score=41.99  Aligned_cols=97  Identities=9%  Similarity=0.085  Sum_probs=60.7

Q ss_pred             HhcCCCCCEEEEEcCc--ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240          136 AAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG--~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~  212 (285)
                      ..+++++++||=.|+|  .|..+..+|+. |++|++++.+++-.+.+++.    +--.++  |..+.++.+    -+.+.
T Consensus        23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~~vi--~~~~~d~~~----~v~~~   92 (179)
T d1qora2          23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAWQVI--NYREEDLVE----RLKEI   92 (179)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCSEEE--ETTTSCHHH----HHHHH
T ss_pred             HhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCeEEE--ECCCCCHHH----HHHHH
Confidence            4466788999998665  56677777776 89999999999999998865    222333  333322222    12221


Q ss_pred             cCCCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       213 ~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      ..+..+|+|+-...-......+..+.+.|.
T Consensus        93 t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~  122 (179)
T d1qora2          93 TGGKKVRVVYDSVGRDTWERSLDCLQRRGL  122 (179)
T ss_dssp             TTTCCEEEEEECSCGGGHHHHHHTEEEEEE
T ss_pred             hCCCCeEEEEeCccHHHHHHHHHHHhcCCe
Confidence            456678888876544434445555544444

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.24  E-value=0.052  Score=44.94  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+... +++..+.+|+.+..-....++-+.+ .-.+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN-HFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH-HTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH-HhCC
Confidence            57889988977654   45666777999999999999998888777654 4788889998775533333333221 1234


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        86 ~idilvnnA   94 (259)
T d2ae2a_          86 KLNILVNNA   94 (259)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            689999884

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.19  E-value=0.049  Score=45.08  Aligned_cols=83  Identities=10%  Similarity=0.115  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|++++.++.+.+.++..+ ++..+.+|+.+..-....++.+.  ..-+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVV--RDFG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            57889988876654   556677779999999999999998888877654 88899999987543333333222  2336


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        82 ~iDilVnna   90 (260)
T d1zema1          82 KIDFLFNNA   90 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CCCeehhhh
Confidence            789999873

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.10  E-value=0.056  Score=44.78  Aligned_cols=86  Identities=12%  Similarity=0.101  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.++++++.++.+.+.+... +++..+..|+.+..-....++.+.+ .-.+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS-MFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-HHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH-HhCC
Confidence            57899999987665   55666777999999999999988888777654 4889999998775433333333221 1236


Q ss_pred             CceEEEEcCCC
Q 023240          217 GFAKVVANIPF  227 (285)
Q Consensus       217 ~~D~Vv~n~P~  227 (285)
                      ..|++|.|...
T Consensus        86 ~idilvnnAG~   96 (259)
T d1xq1a_          86 KLDILINNLGA   96 (259)
T ss_dssp             CCSEEEEECCC
T ss_pred             Ccccccccccc
Confidence            78999998543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.98  E-value=0.073  Score=43.83  Aligned_cols=82  Identities=11%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++.+|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.++..+ ++..+.+|+.+..-....++.+.  ..-+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~--~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV--ERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            4556666765444   455566779999999999999988888776554 88999999988654443333332  24467


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|-
T Consensus        80 iDilVnnA   87 (257)
T d2rhca1          80 VDVLVNNA   87 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            89999873

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.051  Score=44.94  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +|+++|=-|.+.|.   ++..+++.|++|+.++++++.++.+.+.++.. +++..+.+|+.+..-....++.+.  ..-+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~--~~~g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAI--SKLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            57888888865544   34555666999999999999998888877655 488999999987653333333332  2336


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        88 ~iDilvnnA   96 (255)
T d1fmca_          88 KVDILVNNA   96 (255)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEeeeCC
Confidence            789999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.14  Score=39.14  Aligned_cols=51  Identities=22%  Similarity=0.189  Sum_probs=39.9

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      ..+...+++++++||=+|||. |.++..+++. |++++++|.+++-.+.+++.
T Consensus        21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc
Confidence            344567788999999999863 6667777775 88999999999888887754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.22  Score=37.89  Aligned_cols=51  Identities=24%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      ..++..+++++++||=+|||... ++..+++. |+ +|+++|.+++-++.|++.
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            34566778889999999997544 45555554 76 899999999999999865

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.54  E-value=0.06  Score=41.07  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             EEEEEcCc--ccHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Q 023240          144 IVLEIGPG--TGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       144 ~VLDiGcG--~G~~t~~la~~~~~V~giD~~~~~v~~a~~~  182 (285)
                      +|.=||+|  -+.++..+.+.|.+|+++|++++.++.+++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~   42 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER   42 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh
Confidence            46667776  3345556666799999999999998887764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.49  E-value=0.1  Score=42.80  Aligned_cols=79  Identities=18%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             EEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240          145 VLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (285)
Q Consensus       145 VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~  220 (285)
                      +|=-|++.|.   ++..+++.|++|+..|++++.++.+.+.+... +++..+.+|+.+..-....++.+.  ..-+..|+
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~iDi   81 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR--KTLGGFDV   81 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHTTCCCE
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHhCCccE
Confidence            4556765443   45566677999999999999998888777655 488899999988654433333332  24467999


Q ss_pred             EEEcC
Q 023240          221 VVANI  225 (285)
Q Consensus       221 Vv~n~  225 (285)
                      +|.|.
T Consensus        82 lVnnA   86 (255)
T d1gega_          82 IVNNA   86 (255)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99873

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.37  E-value=0.13  Score=44.75  Aligned_cols=70  Identities=23%  Similarity=0.279  Sum_probs=47.2

Q ss_pred             cccCCHHH--------HHHHHHH---hcCCCCCEEEEEcCcccHHHHHHHHh---------CCEEEEEeCCHHHHHHHHH
Q 023240          122 HYMLNSEI--------NDQLAAA---AAVQEGDIVLEIGPGTGSLTNVLLNA---------GATVLAIEKDQHMVGLVRE  181 (285)
Q Consensus       122 ~~~~~~~~--------~~~l~~~---l~~~~~~~VLDiGcG~G~~t~~la~~---------~~~V~giD~~~~~v~~a~~  181 (285)
                      .|+|.+++        +..++..   +...+.-.|+|+|+|.|.++.-+...         ..+++-+|.++...+.-++
T Consensus        49 DF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~  128 (365)
T d1zkda1          49 DFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  128 (365)
T ss_dssp             -CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             CeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence            57887766        2222222   22223457999999999998776542         2368999999998888888


Q ss_pred             HhhcCCCeEE
Q 023240          182 RFASIDQLKV  191 (285)
Q Consensus       182 ~~~~~~~v~~  191 (285)
                      ++....++.+
T Consensus       129 ~l~~~~~i~w  138 (365)
T d1zkda1         129 LLAGIRNIHW  138 (365)
T ss_dssp             HSTTCSSEEE
T ss_pred             Hhccccccee
Confidence            7765445554

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.33  E-value=0.077  Score=44.12  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      +++++|=.|++.|.   ++..+++.|++|+.+|++++.++.+.+.+...    +++..+.+|+.+..-....++.+.  .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~--~   81 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL--K   81 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH--H
Confidence            57788888877664   45666777999999999999999888887654    268899999987654333333332  2


Q ss_pred             CCCCceEEEEc
Q 023240          214 SSSGFAKVVAN  224 (285)
Q Consensus       214 ~~~~~D~Vv~n  224 (285)
                      .-+..|++|.|
T Consensus        82 ~~g~iDilvnn   92 (272)
T d1xkqa_          82 QFGKIDVLVNN   92 (272)
T ss_dssp             HHSCCCEEEEC
T ss_pred             HhCCceEEEeC
Confidence            33678999987

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.25  E-value=0.068  Score=41.53  Aligned_cols=88  Identities=14%  Similarity=0.248  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          141 EGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       141 ~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      ++.+|+=||+|. |..++..|.. |++|+.+|.+++.++..+..+..  +++....+-..+.      +      .-...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~------~------~~~~a   96 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIE------T------AVAEA   96 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHH------H------HHHTC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHH------H------hhccC
Confidence            577999999996 5556666655 99999999999999998887653  5555544433321      1      12446


Q ss_pred             eEEEEc-------CCCCCcHHHHHHhccCCC
Q 023240          219 AKVVAN-------IPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       219 D~Vv~n-------~P~~~~~~i~~~l~~~g~  242 (285)
                      |+||..       .|.-+..+.++.+.++.-
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk~GSV  127 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMRTGSV  127 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCE
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcCCCcE
Confidence            999984       456677787777766543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.22  E-value=0.076  Score=44.25  Aligned_cols=82  Identities=12%  Similarity=0.230  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+...    .++..+.+|+.+..-....++.+.  .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   80 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL--A   80 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH--H
Confidence            47788888877664   45566677999999999999998888877654    268899999988654333333332  2


Q ss_pred             CCCCceEEEEc
Q 023240          214 SSSGFAKVVAN  224 (285)
Q Consensus       214 ~~~~~D~Vv~n  224 (285)
                      .-+..|++|.|
T Consensus        81 ~~G~iDilVnn   91 (274)
T d1xhla_          81 KFGKIDILVNN   91 (274)
T ss_dssp             HHSCCCEEEEC
T ss_pred             HcCCceEEEee
Confidence            33678999987

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.11  E-value=0.096  Score=39.82  Aligned_cols=51  Identities=25%  Similarity=0.281  Sum_probs=40.0

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      ..++..+++++++||=+|+|. |.++..+++. |++|+++|.+++.++.+++.
T Consensus        18 ~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          18 KGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            345567788899999999874 4455666665 88999999999999988864

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.12  Score=42.49  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.+|++++.++.+...+...   .++..+.+|+.+..-....++.+.  ..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV--DH   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHH--HH
Confidence            47788888876554   44556667999999999999888887776532   278889999988653333333332  23


Q ss_pred             CCCceEEEEcCCC
Q 023240          215 SSGFAKVVANIPF  227 (285)
Q Consensus       215 ~~~~D~Vv~n~P~  227 (285)
                      -+..|++|.|-..
T Consensus        80 ~G~iDilVnnAg~   92 (254)
T d2gdza1          80 FGRLDILVNNAGV   92 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCcCeecccccc
Confidence            4678999998543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.11  Score=42.63  Aligned_cols=80  Identities=20%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+..   +++.++.+|+.+..--...++-+.  ..-+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~--~~~g~   79 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETI--RRFGR   79 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEccCCCHHHHHHHHHHHH--HhcCC
Confidence            57889999977663   45566677999999999998888777654   478889999987653333333322  23367


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        80 iDilVnnA   87 (250)
T d1ydea1          80 LDCVVNNA   87 (250)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEecc
Confidence            89999874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.03  E-value=0.083  Score=41.44  Aligned_cols=76  Identities=12%  Similarity=0.080  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      ++++||=.|++.|.   ++..+++.|++|+.++++++.++.+.+.+....++.+...|..+..-..   +      .-+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~------~~~~   92 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRA---E------AVKG   92 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHH---H------HTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHH---H------HhcC
Confidence            68899999965554   4556667799999999999999888877765446666777766543111   1      1245


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|-
T Consensus        93 iDilin~A  100 (191)
T d1luaa1          93 AHFVFTAG  100 (191)
T ss_dssp             CSEEEECC
T ss_pred             cCeeeecC
Confidence            79999883

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.12  Score=42.31  Aligned_cols=76  Identities=21%  Similarity=0.231  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.+|++++-++.+.+..   +++..+..|+.+..-   ...++   ..-+.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~---v~~~~---~~~g~   76 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEA---TERAL---GSVGP   76 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHH---HHHHH---TTCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHH---HHHHH---HHhCC
Confidence            68899999987763   55666777999999999998887776654   468888889877532   22233   34467


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        77 iDilVnnA   84 (244)
T d1pr9a_          77 VDLLVNNA   84 (244)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            89999874

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.94  E-value=0.094  Score=43.32  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEEcccccccchhhhhhHHhhhc
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      +++.+|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+...    +++..+.+|+.+..-.+..++.+.  .
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~--~   81 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL--G   81 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH--H
Confidence            57788888876554   45566677999999999999998888776543    268999999987654333333332  2


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      .-+..|++|.|.
T Consensus        82 ~~g~iDilvnnA   93 (264)
T d1spxa_          82 KFGKLDILVNNA   93 (264)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCCCEeeccc
Confidence            346789999873

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.82  E-value=0.15  Score=35.65  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=45.1

Q ss_pred             CCCEEEEEc-CcccH--HHHHHHHhCCEEEEEeCCH-HHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIG-PGTGS--LTNVLLNAGATVLAIEKDQ-HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiG-cG~G~--~t~~la~~~~~V~giD~~~-~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ..++|.=|| ||+|-  ++..+.+.|.+|+|-|... ...+..++.     .+.+..+...+.               -.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~-----Gi~v~~g~~~~~---------------i~   66 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQA-----GAKIYIGHAEEH---------------IE   66 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHT-----TCEEEESCCGGG---------------GT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHC-----CCeEEECCcccc---------------CC
Confidence            345677775 34554  4566677799999999863 233333322     466666555432               13


Q ss_pred             CceEEEEcCCCCCcHHHHHHhc
Q 023240          217 GFAKVVANIPFNISTDVIKQLL  238 (285)
Q Consensus       217 ~~D~Vv~n~P~~~~~~i~~~l~  238 (285)
                      ..|.||..+......+.+....
T Consensus        67 ~~d~vV~S~AI~~~npel~~A~   88 (96)
T d1p3da1          67 GASVVVVSSAIKDDNPELVTSK   88 (96)
T ss_dssp             TCSEEEECTTSCTTCHHHHHHH
T ss_pred             CCCEEEECCCcCCCCHHHHHHH
Confidence            4578877766555444444433

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.78  E-value=0.12  Score=42.24  Aligned_cols=82  Identities=16%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+.  +++.++.+|+.+..-....++.+.  ...+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   80 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAV--TAFGG   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--CcceEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            57888988987663   556667779999999999998888777764  478889999887653333333332  23366


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|..
T Consensus        81 idilinnAG   89 (244)
T d1nffa_          81 LHVLVNNAG   89 (244)
T ss_dssp             CCEEEECCC
T ss_pred             CeEEEECCc
Confidence            899998843

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.72  E-value=0.12  Score=42.07  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+    ++..+.+|+.+..--...++.+.+  .-+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   77 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----GAHPVVMDVADPASVERGFAEALA--HLGR   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----TCEEEECCTTCHHHHHHHHHHHHH--HHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHH--hcCC
Confidence            57889988986664   34556667999999999998888777654    577888998876543333333322  3357


Q ss_pred             ceEEEEc
Q 023240          218 FAKVVAN  224 (285)
Q Consensus       218 ~D~Vv~n  224 (285)
                      .|++|.|
T Consensus        78 iDilVnn   84 (242)
T d1ulsa_          78 LDGVVHY   84 (242)
T ss_dssp             CCEEEEC
T ss_pred             ceEEEEC
Confidence            8999987

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.72  E-value=0.12  Score=42.62  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.+|++++.++.+...+...   .++..+.+|+.+..--...++.+.  ..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~--~~   80 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT--ER   80 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH--HH
Confidence            47788888987664   56677778999999999999888776665422   378888999987654333333332  23


Q ss_pred             CCCceEEEEc
Q 023240          215 SSGFAKVVAN  224 (285)
Q Consensus       215 ~~~~D~Vv~n  224 (285)
                      -+..|++|.|
T Consensus        81 ~G~iDiLVnn   90 (258)
T d1iy8a_          81 FGRIDGFFNN   90 (258)
T ss_dssp             HSCCSEEEEC
T ss_pred             hCCCCEEEEC
Confidence            3678999987

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.62  E-value=0.26  Score=37.75  Aligned_cols=85  Identities=12%  Similarity=0.149  Sum_probs=52.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      +....+++++++||=+|||.-. ++..+++. ++ .|+++|.++.-++.+++.    +-..++..+-.+  .    .+.+
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~~~i~~~~~~--~----~~~i   89 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GATHVINSKTQD--P----VAAI   89 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCSEEEETTTSC--H----HHHH
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCeEEEeCCCcC--H----HHHH
Confidence            4555678889999999997433 45555554 55 678899999999999875    223444332211  1    1122


Q ss_pred             hhhcCCCCceEEEEcCCCC
Q 023240          210 ERRKSSSGFAKVVANIPFN  228 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~  228 (285)
                      .+ ...+.+|+||-.....
T Consensus        90 ~~-~t~gg~D~vid~~G~~  107 (174)
T d1f8fa2          90 KE-ITDGGVNFALESTGSP  107 (174)
T ss_dssp             HH-HTTSCEEEEEECSCCH
T ss_pred             HH-HcCCCCcEEEEcCCcH
Confidence            22 2335789998865543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.17  Score=41.29  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|++.|.   ++..+++.|++|+..|++++.++.+.+.+.  .++..+..|+.+..-....++.+.  ..-+.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   78 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--ANGKGLMLNVTDPASIESVLEKIR--AEFGE   78 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHH--HHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--CCCcEEEEEecCHHHhhhhhhhhh--cccCC
Confidence            47788888876554   455666779999999999999888877764  367888899877543333333332  24467


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        79 iDilVnnA   86 (243)
T d1q7ba_          79 VDILVNNA   86 (243)
T ss_dssp             CSEEEECC
T ss_pred             cceehhhh
Confidence            89999873

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.52  E-value=0.14  Score=42.00  Aligned_cols=83  Identities=14%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhh-cC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~-~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+. .. .++..+.+|+.+..-....++.+.  ..-
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK--EKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            57889999977664   456667779999999999888877665543 22 378889999987653333333332  233


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        82 g~iDiLVnnA   91 (251)
T d1vl8a_          82 GKLDTVVNAA   91 (251)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            6789999873

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.38  E-value=0.18  Score=41.99  Aligned_cols=84  Identities=20%  Similarity=0.290  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.+|++.+.++.+.+.+..  ..++..+..|+.+..-....++.+.  ...
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~--~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI--KVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhh--hhc
Confidence            57899999977662   5556666799999999999887776665532  2478889999887653332222222  345


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus       102 g~iDilvnnAg  112 (294)
T d1w6ua_         102 GHPNIVINNAA  112 (294)
T ss_dssp             CSCSEEEECCC
T ss_pred             cccchhhhhhh
Confidence            77899998743

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.35  E-value=0.14  Score=42.13  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|.+.|.   ++..+++.|++|+.+|++++.++.+.+.+.  +++.++.+|+.+..-....++-+.  ..-+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   79 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYAR--EEFGS   79 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEcccCCHHHHHHHHHHHH--HHcCC
Confidence            57889999987763   566667779999999999988777665553  478899999987643333333332  23367


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        80 iDilVnnA   87 (254)
T d1hdca_          80 VDGLVNNA   87 (254)
T ss_dssp             CCEEEECC
T ss_pred             ccEEEecC
Confidence            89999874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.27  E-value=0.14  Score=41.75  Aligned_cols=84  Identities=15%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=-|+    |.|. ++..|++.|++|+..+.+++..+.+++.....++...+..|+.+..-.+..++.+.  ...
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVK--EAF   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHH--Hhc
Confidence            5789999995    4565 56677788999999999988877777666655678889999987654333333332  234


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|.-
T Consensus        85 g~iDilVnnag   95 (256)
T d1ulua_          85 GGLDYLVHAIA   95 (256)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCceEEEeccc
Confidence            67899998743

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.24  E-value=0.14  Score=42.04  Aligned_cols=82  Identities=12%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+.  +++..+.+|+.+..--...++.+.  ..-+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--~~~~~~~~Dvt~~~~v~~~~~~~~--~~~g~   79 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG--PAACAIALDVTDQASIDRCVAELL--DRWGS   79 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEeeCCCHHHHHHHHHHHH--HHhCC
Confidence            47788888876664   455666779999999999988887777663  478889999987653333333332  23367


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|++|.|.-
T Consensus        80 iDilVnnAg   88 (256)
T d1k2wa_          80 IDILVNNAA   88 (256)
T ss_dssp             CCEEEECCC
T ss_pred             ccEEEeecc
Confidence            899999844

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.23  E-value=0.13  Score=42.30  Aligned_cols=81  Identities=16%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=-|++.|.   ++..+++.|++|+..|++++.++.+.+.+.  ++..++.+|+.+..-....++.+.+  ..+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~--~~g~   80 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--ERSMFVRHDVSSEADWTLVMAAVQR--RLGT   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEEECCCTTCHHHHHHHHHHHHH--HHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEeecCCHHHHHHHHHHHHH--HhCC
Confidence            57888888876553   455566679999999999998888777663  4678888998876544444444332  3467


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        81 iDilVnnA   88 (253)
T d1hxha_          81 LNVLVNNA   88 (253)
T ss_dssp             CCEEEECC
T ss_pred             CCeEEecc
Confidence            89999984

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.22  Score=41.84  Aligned_cols=84  Identities=13%  Similarity=0.176  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.++++++.++.+.+.+..      ..++..+.+|+.+..-....++.+. 
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~-   89 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL-   89 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH-
Confidence            68899988977664   3455666799999999999888777665542      1378889999988654333333332 


Q ss_pred             hcCCCCceEEEEcCC
Q 023240          212 RKSSSGFAKVVANIP  226 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P  226 (285)
                       ...+..|++|.|..
T Consensus        90 -~~~G~iDiLVnnAg  103 (297)
T d1yxma1          90 -DTFGKINFLVNNGG  103 (297)
T ss_dssp             -HHHSCCCEEEECCC
T ss_pred             -HHhCCeEEEEeecc
Confidence             23357899998743

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.95  E-value=0.045  Score=40.22  Aligned_cols=66  Identities=17%  Similarity=0.196  Sum_probs=43.8

Q ss_pred             CcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          150 PGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       150 cG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      ||.|.++..+++    .|..|+.+|.|++.++.++..     ...++.||+.+.....       . ..-...|.++...
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~-------~-a~i~~a~~vi~~~   72 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-----ATHAVIANATEENELL-------S-LGIRNFEYVIVAI   72 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHH-------H-HTGGGCSEEEECC
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-----CCcceeeecccchhhh-------c-cCCccccEEEEEc
Confidence            355676666654    488999999999999987643     3567889987764321       1 1224467777766


Q ss_pred             CCC
Q 023240          226 PFN  228 (285)
Q Consensus       226 P~~  228 (285)
                      |-.
T Consensus        73 ~~~   75 (134)
T d2hmva1          73 GAN   75 (134)
T ss_dssp             CSC
T ss_pred             Cch
Confidence            643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.93  E-value=0.21  Score=40.56  Aligned_cols=76  Identities=17%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.+|++++-++.+.+..   +++..+..|+.+...   ....+   ..-+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~---v~~~~---~~~g~   74 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDA---TEKAL---GGIGP   74 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHH---HHHHH---TTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHH---HHHHH---HHcCC
Confidence            57889988876663   45556677999999999988777666554   478888889877532   22233   34477


Q ss_pred             ceEEEEcC
Q 023240          218 FAKVVANI  225 (285)
Q Consensus       218 ~D~Vv~n~  225 (285)
                      .|++|.|.
T Consensus        75 iDilVnnA   82 (242)
T d1cyda_          75 VDLLVNNA   82 (242)
T ss_dssp             CSEEEECC
T ss_pred             CeEEEECC
Confidence            89999873

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.86  E-value=0.099  Score=40.53  Aligned_cols=50  Identities=20%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~  182 (285)
                      ++...+++++++||=+|||. |.+++.+++. |+ .|+++|.+++..+.|++.
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            34456677899999999987 7778888876 65 799999999999888875

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.17  Score=41.74  Aligned_cols=81  Identities=16%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             CCEE-EEEcCcccH---HHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          142 GDIV-LEIGPGTGS---LTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       142 ~~~V-LDiGcG~G~---~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      |++| |==|++.|.   ++..|++. +++|+..+++++..+.+.+.++.. +++.++..|+.+..--...++.+.+  ..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~--~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK--EY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHH--hc
Confidence            4445 344544433   34556666 789999999999998888887654 4899999999887644444444432  34


Q ss_pred             CCceEEEEc
Q 023240          216 SGFAKVVAN  224 (285)
Q Consensus       216 ~~~D~Vv~n  224 (285)
                      +..|++|.|
T Consensus        80 g~iDiLVnN   88 (275)
T d1wmaa1          80 GGLDVLVNN   88 (275)
T ss_dssp             SSEEEEEEC
T ss_pred             CCcEEEEEc
Confidence            679999998

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.80  E-value=0.24  Score=40.47  Aligned_cols=84  Identities=20%  Similarity=0.224  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCccc---HHHHHHHHhCCEEEEE-eCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAI-EKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G---~~t~~la~~~~~V~gi-D~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .|++||=.|.+.|   .++..+++.|++|+.. ..+++..+.+.+.+...+ ++..+.+|+.+..-....++-+.  ...
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~--~~~   82 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAV--SHF   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHH--HHc
Confidence            6889998886655   3556666779988764 677888888888877654 89999999987543333333222  234


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|..
T Consensus        83 g~idilinnag   93 (259)
T d1ja9a_          83 GGLDFVMSNSG   93 (259)
T ss_dssp             SCEEEEECCCC
T ss_pred             CCCcEEEeccc
Confidence            67899998854

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.78  E-value=0.64  Score=34.97  Aligned_cols=51  Identities=18%  Similarity=0.371  Sum_probs=40.1

Q ss_pred             HHHHHhcCCCCCEEEEEcC--cccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGP--GTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~  182 (285)
                      ..+...+++++++||=+|+  |.|.++..+++. + .+|+++|.+++-.+.+++.
T Consensus        18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            4456677889999999997  355666666664 5 5999999999999999875

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.73  E-value=0.09  Score=42.89  Aligned_cols=83  Identities=13%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             CEEEEEcCcccH---HHHHHH---HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          143 DIVLEIGPGTGS---LTNVLL---NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       143 ~~VLDiGcG~G~---~t~~la---~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      ++||=-|++.|.   ++..++   +.|++|+..+++++.++.+++..+..+++.++..|+.+..-.+..++.+++....+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            367767765553   222333   24789999999988877776655555799999999988765555555544323456


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        83 ~iDiLvnNA   91 (248)
T d1snya_          83 GLNVLFNNA   91 (248)
T ss_dssp             CCSEEEECC
T ss_pred             CcceEEeec
Confidence            789999883

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.63  E-value=0.23  Score=40.27  Aligned_cols=80  Identities=11%  Similarity=0.214  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=.|++.|.   ++..+++.|++|+..+++.+.++.+.+.+.  +++.++.+|+.+..-....++-+.  ..-+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~--~~~g~   79 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEAL--EEFGR   79 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            57889988987654   455566679999999999988776665543  478889999987654333333332  23367


Q ss_pred             ceEEEEc
Q 023240          218 FAKVVAN  224 (285)
Q Consensus       218 ~D~Vv~n  224 (285)
                      .|++|.|
T Consensus        80 iDiLinn   86 (241)
T d2a4ka1          80 LHGVAHF   86 (241)
T ss_dssp             CCEEEEG
T ss_pred             ccEeccc
Confidence            8999987

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.47  E-value=0.2  Score=41.27  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC-HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~-~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=-|++.|.   ++..+++.|++|+.++++ ++..+.+.+.++.. +++..+..|+.+..-....++.+.  ...
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~~~   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAI--KEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            57888888876663   456667779999999987 45666666666544 378889999987654333333332  233


Q ss_pred             CCceEEEEcC
Q 023240          216 SGFAKVVANI  225 (285)
Q Consensus       216 ~~~D~Vv~n~  225 (285)
                      +..|++|.|.
T Consensus        84 G~iDiLVnnA   93 (261)
T d1geea_          84 GKLDVMINNA   93 (261)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEeeccc
Confidence            6789999884

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.30  E-value=0.23  Score=41.11  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+...  +++..+.+|+.+..-....++.+.  ..-+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g~   79 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG--DNVLGIVGDVRSLEDQKQAASRCV--ARFGK   79 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeeEEecccccHHHHHHHHHHHH--HHhCC
Confidence            57889988976554   445566679999999999988877766653  478899999987653333333222  23467


Q ss_pred             ceEEEEc
Q 023240          218 FAKVVAN  224 (285)
Q Consensus       218 ~D~Vv~n  224 (285)
                      .|++|.|
T Consensus        80 idilvnn   86 (276)
T d1bdba_          80 IDTLIPN   86 (276)
T ss_dssp             CCEEECC
T ss_pred             ccccccc
Confidence            8998876

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.28  E-value=0.19  Score=41.23  Aligned_cols=84  Identities=19%  Similarity=0.228  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhh-cC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~-~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=-|.+.|.   ++..+++.|++|+.+|++++-++.+.+.+. .. .++..+.+|+.+..-....++.+.  ..-
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID--ADL   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            57889988976554   455666679999999998776665554442 22 478899999987654444443333  245


Q ss_pred             CCceEEEEcCC
Q 023240          216 SGFAKVVANIP  226 (285)
Q Consensus       216 ~~~D~Vv~n~P  226 (285)
                      +..|++|.|..
T Consensus        86 g~iDilVnnAg   96 (260)
T d1h5qa_          86 GPISGLIANAG   96 (260)
T ss_dssp             CSEEEEEECCC
T ss_pred             CCCcEeccccc
Confidence            78999998854

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.02  E-value=0.99  Score=33.92  Aligned_cols=101  Identities=10%  Similarity=0.101  Sum_probs=57.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      +.+..+++++++||=.|||. |.++..+++. + ..|+++|.+++..+.+++.    +.-.++..+-.+.+    ....+
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~~~i~~~~~~~~----~~~~~   91 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GATECINPQDFSKP----IQEVL   91 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSC----HHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCcEEEeCCchhhH----HHHHH
Confidence            34456778999999998873 3345555554 5 5899999999999988865    22233322111111    11111


Q ss_pred             hhhcCCCCceEEEEcCCCCCcHHHHHHhccCCC
Q 023240          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      +. .....+|+||-...-....+....++..++
T Consensus        92 ~~-~~~~g~D~vid~~G~~~~~~~~~~~~~~g~  123 (176)
T d2fzwa2          92 IE-MTDGGVDYSFECIGNVKVMRAALEACHKGW  123 (176)
T ss_dssp             HH-HTTSCBSEEEECSCCHHHHHHHHHTBCTTT
T ss_pred             HH-HcCCCCcEeeecCCCHHHHHHHHHhhcCCc
Confidence            11 334568999886543333333344444443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.00  E-value=0.38  Score=39.47  Aligned_cols=85  Identities=16%  Similarity=0.129  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC-HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~-~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+..+.+ ++.++.+.+.++.. .++..+.+|..+..-....++-+.  ...
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~--~~~   94 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV--KIF   94 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH--HHh
Confidence            57899999987774   566777779999999986 66677666666554 478899999987543333333322  233


Q ss_pred             CCceEEEEcCCC
Q 023240          216 SGFAKVVANIPF  227 (285)
Q Consensus       216 ~~~D~Vv~n~P~  227 (285)
                      +..|++|.|...
T Consensus        95 g~idilV~nag~  106 (272)
T d1g0oa_          95 GKLDIVCSNSGV  106 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCcccccccc
Confidence            678999987543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=91.81  E-value=0.31  Score=39.77  Aligned_cols=85  Identities=18%  Similarity=0.194  Sum_probs=57.2

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +++++|=.|+    |.|. ++..|++.|++|+.++++++..+.+++-....++..+...|+.+..-....++.+.  ...
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~   81 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVK--KDL   81 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHH--HHc
Confidence            5889999984    4666 45666777999999999977666665554444567777888766543333333332  245


Q ss_pred             CCceEEEEcCCC
Q 023240          216 SGFAKVVANIPF  227 (285)
Q Consensus       216 ~~~D~Vv~n~P~  227 (285)
                      +..|.+|.|...
T Consensus        82 g~id~lV~nag~   93 (274)
T d2pd4a1          82 GSLDFIVHSVAF   93 (274)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCeEEeeccc
Confidence            778999987543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.78  E-value=0.29  Score=39.88  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+..|++++..+.++..     +..++..|+.+..-....++.+.  ..-+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~--~~~G~   76 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI-----GGAFFQVDLEDERERVRFVEEAA--YALGR   76 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH-----TCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHH--HhcCC
Confidence            57889988876554   4556667799999999998876655433     45678888877643333333222  23467


Q ss_pred             ceEEEEc
Q 023240          218 FAKVVAN  224 (285)
Q Consensus       218 ~D~Vv~n  224 (285)
                      .|++|.|
T Consensus        77 iDiLVnn   83 (248)
T d2d1ya1          77 VDVLVNN   83 (248)
T ss_dssp             CCEEEEC
T ss_pred             CCeEEEe
Confidence            8999987

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.37  E-value=0.19  Score=44.20  Aligned_cols=48  Identities=15%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC
Q 023240          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI  186 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~  186 (285)
                      +.++..++|||+=.|..+..++..    ..+|+++|.++...+.++++++.+
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            456789999999999998877653    358999999999999999988754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.26  E-value=0.24  Score=34.08  Aligned_cols=68  Identities=9%  Similarity=0.059  Sum_probs=39.1

Q ss_pred             cccH--HHHHHHHhCCEEEEEeCCHH-HHHHHHHHhhcCCCeEEEEc-ccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          151 GTGS--LTNVLLNAGATVLAIEKDQH-MVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       151 G~G~--~t~~la~~~~~V~giD~~~~-~v~~a~~~~~~~~~v~~~~g-D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      |+|-  ++..+.+.|.+|.|-|..+. ..+.    +++. .+++..+ |...+                ...|.||..+.
T Consensus        11 G~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~----L~~~-Gi~i~~gh~~~~i----------------~~~d~vV~SsA   69 (89)
T d1j6ua1          11 GIGMSAVALHEFSNGNDVYGSNIEETERTAY----LRKL-GIPIFVPHSADNW----------------YDPDLVIKTPA   69 (89)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSCCHHHHH----HHHT-TCCEESSCCTTSC----------------CCCSEEEECTT
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeCCCChhHHH----HHHC-CCeEEeeeccccc----------------CCCCEEEEecC
Confidence            4444  55566677999999998763 3333    2222 3665544 22222                34688888776


Q ss_pred             CCCcHHHHHHhcc
Q 023240          227 FNISTDVIKQLLP  239 (285)
Q Consensus       227 ~~~~~~i~~~l~~  239 (285)
                      .....+.+.....
T Consensus        70 I~~~npel~~A~~   82 (89)
T d1j6ua1          70 VRDDNPEIVRARM   82 (89)
T ss_dssp             CCTTCHHHHHHHH
T ss_pred             cCCCCHHHHHHHH
Confidence            6555555554443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.25  E-value=0.19  Score=38.50  Aligned_cols=97  Identities=13%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             HHhcCCCCCEEEEEc--CcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh
Q 023240          135 AAAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       135 ~~l~~~~~~~VLDiG--cG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +...++++++||=.|  .|.|..+..+|+. |++|+++..+++-.+.+++.    +--.++.  ..+.++.    +.+.+
T Consensus        19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~~vi~--~~~~~~~----~~v~~   88 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVEYVGD--SRSVDFA----DEILE   88 (183)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCSEEEE--TTCSTHH----HHHHH
T ss_pred             HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----ccccccc--CCccCHH----HHHHH
Confidence            444677889999877  3566777778776 89999999888877777753    2222322  2222221    12222


Q ss_pred             hcCCCCceEEEEcCCCCCcHHHHHHhccCC
Q 023240          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (285)
Q Consensus       212 ~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g  241 (285)
                      ...+..+|+|+-...-......++.+.+.|
T Consensus        89 ~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G  118 (183)
T d1pqwa_          89 LTDGYGVDVVLNSLAGEAIQRGVQILAPGG  118 (183)
T ss_dssp             HTTTCCEEEEEECCCTHHHHHHHHTEEEEE
T ss_pred             HhCCCCEEEEEecccchHHHHHHHHhcCCC
Confidence            134567999998665333344444444443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.24  E-value=0.19  Score=41.23  Aligned_cols=83  Identities=16%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC-HHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~-~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~  214 (285)
                      +++++|=-|++.|.   ++..|++.|++|+.++++ ++.++.+.+.+..  ..++.++.+|+.+..-....++.+.  ..
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~   80 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV--RQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH--HH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HH
Confidence            57788877776664   555677779999999986 5666666655432  2378889999988654333333332  23


Q ss_pred             CCCceEEEEcC
Q 023240          215 SSGFAKVVANI  225 (285)
Q Consensus       215 ~~~~D~Vv~n~  225 (285)
                      -+..|++|.|.
T Consensus        81 ~G~iDiLVnnA   91 (260)
T d1x1ta1          81 MGRIDILVNNA   91 (260)
T ss_dssp             HSCCSEEEECC
T ss_pred             hCCCcEEEeec
Confidence            36789999873

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.25  Score=40.61  Aligned_cols=82  Identities=15%  Similarity=0.247  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +|+++|=-|++.|.   ++..+++.|++|+.++++++.++.+.......  ..+.....|..+........+.+.  ...
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~   90 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG--KLM   90 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH--HHh
Confidence            68899999988775   55666777999999999999998887665422  356777777765543333233322  233


Q ss_pred             CCceEEEEc
Q 023240          216 SGFAKVVAN  224 (285)
Q Consensus       216 ~~~D~Vv~n  224 (285)
                      +..|+++.|
T Consensus        91 g~~~~li~n   99 (269)
T d1xu9a_          91 GGLDMLILN   99 (269)
T ss_dssp             TSCSEEEEC
T ss_pred             CCccccccc
Confidence            567887776

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.79  E-value=0.36  Score=39.19  Aligned_cols=81  Identities=9%  Similarity=0.049  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++.+|=-|.+.|.   ++..+++.|++|+..|+++.-  .+....+.. +++..+.+|+.+..-....++.+.  ..-+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~--~~~G   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVI--STFG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence            57888888876553   455666779999999987642  222222222 488999999987654443333332  2346


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        80 ~iDilVnnA   88 (247)
T d2ew8a1          80 RCDILVNNA   88 (247)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999883

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.56  E-value=1.1  Score=33.93  Aligned_cols=102  Identities=14%  Similarity=0.112  Sum_probs=59.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEc-ccccccchhhhhhH
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSL  208 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~g-D~~~~~~~~~~~d~  208 (285)
                      +....+++++++||=+|+|.+. ++..+++. + .+|+++|.+++-.+.+++.-    ....+.. +..+.     ....
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G----a~~~i~~~~~~~~-----~~~~   90 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG----ATECVNPQDYKKP-----IQEV   90 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT----CSEEECGGGCSSC-----HHHH
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC----CeeEEecCCchhH-----HHHH
Confidence            3445677899999999997554 34444444 4 69999999999999988763    2222221 11111     0111


Q ss_pred             HhhhcCCCCceEEEEcCCCCCcH-HHHHHhccCCCce
Q 023240          209 FERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGDIF  244 (285)
Q Consensus       209 ~~~~~~~~~~D~Vv~n~P~~~~~-~i~~~l~~~g~~~  244 (285)
                      .+. ...+.+|++|-........ ..+..+..+++.+
T Consensus        91 ~~~-~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~  126 (176)
T d2jhfa2          91 LTE-MSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVS  126 (176)
T ss_dssp             HHH-HTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEE
T ss_pred             HHH-HhcCCCCEEEecCCchhHHHHHHHHHhcCCcce
Confidence            111 3445789988876554333 3344444444433

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.43  E-value=0.48  Score=38.29  Aligned_cols=79  Identities=10%  Similarity=0.091  Sum_probs=55.3

Q ss_pred             EEEEcCcccH---HHHHHHHhCCE-------EEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhc
Q 023240          145 VLEIGPGTGS---LTNVLLNAGAT-------VLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRK  213 (285)
Q Consensus       145 VLDiGcG~G~---~t~~la~~~~~-------V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~  213 (285)
                      ||=-|++.|.   ++..+++.|++       |+..+.+++.++.+.+.+...+ ++..+.+|+.+..-....++.+.  .
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~   81 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV--E   81 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--H
Confidence            4556766554   44566666776       9999999999988888776554 78889999988654444443332  2


Q ss_pred             CCCCceEEEEcC
Q 023240          214 SSSGFAKVVANI  225 (285)
Q Consensus       214 ~~~~~D~Vv~n~  225 (285)
                      .-+..|++|.|.
T Consensus        82 ~~g~iDilvnnA   93 (240)
T d2bd0a1          82 RYGHIDCLVNNA   93 (240)
T ss_dssp             HTSCCSEEEECC
T ss_pred             HcCCcceeeccc
Confidence            456789999874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.26  E-value=0.23  Score=36.01  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=46.6

Q ss_pred             CcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240          150 PGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (285)
Q Consensus       150 cG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P  226 (285)
                      ||.|..+..+++.  +..|+.||.++..++.++..     ++.++.||+.+...       ++. ..-...+.++...+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-----~~~~i~Gd~~~~~~-------L~~-a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-----GANFVHGDPTRVSD-------LEK-ANVRGARAVIVNLE   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-----TCEEEESCTTSHHH-------HHH-TTCTTCSEEEECCS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-----CccccccccCCHHH-------HHH-hhhhcCcEEEEecc
Confidence            6788899988885  66889999999988877543     68899999987532       111 23455677777655

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.67  Score=37.25  Aligned_cols=85  Identities=22%  Similarity=0.253  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCcc--c--H-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          141 EGDIVLEIGPGT--G--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       141 ~~~~VLDiGcG~--G--~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      ++++||=-|++.  |  . .+..+++.|++|+..+++++..+.+.+.....++......|..+..-....+..+.  ...
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   81 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG--KVW   81 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH--TTC
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhh--hcc
Confidence            578899888743  4  3 66777888999999999988888777766666677777777655432222111111  455


Q ss_pred             CCceEEEEcCCC
Q 023240          216 SGFAKVVANIPF  227 (285)
Q Consensus       216 ~~~D~Vv~n~P~  227 (285)
                      +..|.+|.|..+
T Consensus        82 ~~~d~~v~~a~~   93 (258)
T d1qsga_          82 PKFDGFVHSIGF   93 (258)
T ss_dssp             SSEEEEEECCCC
T ss_pred             cccceEEEeecc
Confidence            778999887443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.03  E-value=0.49  Score=36.25  Aligned_cols=50  Identities=18%  Similarity=0.335  Sum_probs=38.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcc--cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGT--GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~--G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      +.+..+++++++||=.|+|.  |..+..+++. |++|+++..+++-.+.+++.
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh
Confidence            33455678899999878754  4566677776 89999999999888887765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.88  E-value=0.29  Score=37.73  Aligned_cols=50  Identities=12%  Similarity=0.171  Sum_probs=38.7

Q ss_pred             HHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-C-CEEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-G-ATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~-~~V~giD~~~~~v~~a~~~  182 (285)
                      +....+++++++|+=+|||... ++..+++. | .+|+++|.+++.++.|++.
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            3445567789999999998655 44455554 5 5899999999999999987

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.70  E-value=0.48  Score=35.68  Aligned_cols=39  Identities=18%  Similarity=0.331  Sum_probs=29.1

Q ss_pred             EEEEEcCcc-cH-HHHHHHHhC--CEEEEEeCCHHHHHHHHHH
Q 023240          144 IVLEIGPGT-GS-LTNVLLNAG--ATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       144 ~VLDiGcG~-G~-~t~~la~~~--~~V~giD~~~~~v~~a~~~  182 (285)
                      +|+=||||. |. ++..+.+.+  .+|+++|.+++.++.|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            577799874 44 344555555  4899999999999999876

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=89.52  E-value=0.13  Score=42.94  Aligned_cols=79  Identities=11%  Similarity=0.034  Sum_probs=63.7

Q ss_pred             EEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (285)
Q Consensus       146 LDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~  225 (285)
                      +.+.+|+-.++..+.+..-+.+..|..+.-.+.+++++....++++.+.|..+.-.+     ++   ++...--+|+.+|
T Consensus        87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~~~~~~v~~~DG~~~l~a-----ll---PP~~rRgLVLIDP  158 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNA-----LL---PPPEKRGLIFIDP  158 (271)
T ss_dssp             CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHH-----HC---SCTTSCEEEEECC
T ss_pred             cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhccCCCceEEcCchHHHHHh-----hC---CCCCCceEEEecC
Confidence            468999999999998888899999999999999999987767999999998774321     11   3344456899999


Q ss_pred             CCCCcHH
Q 023240          226 PFNISTD  232 (285)
Q Consensus       226 P~~~~~~  232 (285)
                      ||...++
T Consensus       159 pYE~k~e  165 (271)
T d2oo3a1         159 SYERKEE  165 (271)
T ss_dssp             CCCSTTH
T ss_pred             CcCCHHH
Confidence            9988764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.41  E-value=0.36  Score=36.63  Aligned_cols=50  Identities=14%  Similarity=0.195  Sum_probs=37.9

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHH-HHHHh--CCEEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGSLTN-VLLNA--GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~-~la~~--~~~V~giD~~~~~v~~a~~~  182 (285)
                      +.+..+++++++|+=+|+|.+.... .+++.  +..|+++|.+++.++.+++.
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            3445677889999999999865443 34443  45899999999999998865

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.56  Score=34.79  Aligned_cols=73  Identities=14%  Similarity=0.039  Sum_probs=45.1

Q ss_pred             EEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .|+=+|+  |..+..+++    .+.+|+.||.+++........... .++.++.||+.+...       ++. ..-...+
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~-------L~~-a~i~~a~   73 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSV-------LKK-AGIDRCR   73 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHH-------HHH-HTTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHH-------HHH-hccccCC
Confidence            4555555  566555554    478999999998765443333321 378999999988542       111 2345567


Q ss_pred             EEEEcCCC
Q 023240          220 KVVANIPF  227 (285)
Q Consensus       220 ~Vv~n~P~  227 (285)
                      .+|.-.+-
T Consensus        74 ~vi~~~~~   81 (153)
T d1id1a_          74 AILALSDN   81 (153)
T ss_dssp             EEEECSSC
T ss_pred             EEEEcccc
Confidence            77775543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.73  E-value=0.48  Score=36.59  Aligned_cols=100  Identities=20%  Similarity=0.166  Sum_probs=62.9

Q ss_pred             HHHHhcCCCCCEEEEEcCc--ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240          133 LAAAAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG--~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~  209 (285)
                      +...-...++++||=-|.+  .|.++..+++. |++|++.-.+++-.+.+++.    +.-.++..+  +..     .+.+
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~~--~~~-----~~~~   91 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLARE--DVM-----AERI   91 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEECC--------------
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeeecc--hhH-----HHHH
Confidence            3444455568889988864  45577777766 89999999998888888865    212222211  100     0011


Q ss_pred             hhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCce
Q 023240          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (285)
Q Consensus       210 ~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~  244 (285)
                      .. .....+|+|+-+..-......+..|.++|.+.
T Consensus        92 ~~-~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv  125 (176)
T d1xa0a2          92 RP-LDKQRWAAAVDPVGGRTLATVLSRMRYGGAVA  125 (176)
T ss_dssp             ---CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEE
T ss_pred             HH-hhccCcCEEEEcCCchhHHHHHHHhCCCceEE
Confidence            10 34567999998877666777777777766554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.32  E-value=0.36  Score=39.08  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=53.8

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCC--EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240          142 GDIVLEIGPGTGS---LTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (285)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~--~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~  216 (285)
                      +++||=-|+..|.   ++..+++.|+  +|++...+++.++.+++..  ..++.++..|+.+..-....++.+.+.....
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   80 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK--DSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCC--CTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhh--CCceEEEEEecCCHHHHHHHHHHHHHHhCCC
Confidence            4688877876663   4555666664  7999999987766654322  2489999999988654444444443322334


Q ss_pred             CceEEEEcC
Q 023240          217 GFAKVVANI  225 (285)
Q Consensus       217 ~~D~Vv~n~  225 (285)
                      ..|++|.|.
T Consensus        81 ~idilinnA   89 (250)
T d1yo6a1          81 GLSLLINNA   89 (250)
T ss_dssp             CCCEEEECC
T ss_pred             CeEEEEEcC
Confidence            589999883

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=88.06  E-value=0.68  Score=38.12  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=44.1

Q ss_pred             EEEEEcCcccHHHHHHHH----hCCEEEEEeC-CHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEK-DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~V~giD~-~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      +||=.| |+|+++..+.+    +|.+|+++|. +..............++++++.+|+.+.....   ..+    ....+
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~---~~~----~~~~~   73 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVT---RLI----TKYMP   73 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHH---HHH----HHHCC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHH---HHH----HhcCC
Confidence            577555 77988876654    4899999983 33222222223334468999999998754211   111    12346


Q ss_pred             eEEEEc
Q 023240          219 AKVVAN  224 (285)
Q Consensus       219 D~Vv~n  224 (285)
                      |.||.-
T Consensus        74 d~Vih~   79 (338)
T d1orra_          74 DSCFHL   79 (338)
T ss_dssp             SEEEEC
T ss_pred             ceEEee
Confidence            888764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.95  E-value=0.43  Score=36.34  Aligned_cols=51  Identities=22%  Similarity=0.192  Sum_probs=39.6

Q ss_pred             HHHHHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      ..+...+++++++||=.|.  |.|..+..+++. |++|++++.+++..+.+++.
T Consensus        18 ~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l   71 (171)
T d1iz0a2          18 LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL   71 (171)
T ss_dssp             HHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc
Confidence            3455667788999999884  346677777776 88999999999888887754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.78  E-value=0.51  Score=36.11  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             HHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-C-CEEEEEeCCHHHHHHHHHH
Q 023240          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-G-ATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~-~~V~giD~~~~~v~~a~~~  182 (285)
                      +++..+++++++||=+|||... ++..+++. + .+|+++|.+++.++.|++.
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            3455677899999999998654 44445554 6 4899999999999999875

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.34  E-value=0.25  Score=41.56  Aligned_cols=59  Identities=24%  Similarity=0.137  Sum_probs=42.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc
Q 023240          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (285)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~  200 (285)
                      ++++||=.| |+|+++..+++    .|.+|+++|+++.-.....+.....++++++.+|+.+..
T Consensus         7 ~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   69 (356)
T d1rkxa_           7 QGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN   69 (356)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChH
Confidence            578999988 67988877765    388999999875544333333333358999999987643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.27  E-value=0.67  Score=34.53  Aligned_cols=89  Identities=17%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             CCEEEEEcCc-ccHH-HHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          142 GDIVLEIGPG-TGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       142 ~~~VLDiGcG-~G~~-t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      .++||=||+| .|.. +..|++.|.+|+.+|++.+..+...+++   +.......+......   ..+.      -...|
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~---~~~~~~~~~~~~~~~---~~~~------i~~~~   69 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV---QHSTPISLDVNDDAA---LDAE------VAKHD   69 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC---TTEEEEECCTTCHHH---HHHH------HTTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc---cccccccccccchhh---hHhh------hhccc
Confidence            4678889884 3332 2333445889999999999877766554   334443333322111   1111      13457


Q ss_pred             EEEEcCCCCCcHHHHHHhccCCC
Q 023240          220 KVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       220 ~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      .+++..|+.............+.
T Consensus        70 ~~i~~~~~~~~~~~~~~~~~~~~   92 (182)
T d1e5qa1          70 LVISLIPYTFHATVIKSAIRQKK   92 (182)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHTC
T ss_pred             eeEeeccchhhhHHHHHHHhhcc
Confidence            77777776655555554444333

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.03  E-value=0.97  Score=36.43  Aligned_cols=80  Identities=20%  Similarity=0.153  Sum_probs=51.6

Q ss_pred             EEEEEcCcccH---HHHHHHHhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (285)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~  218 (285)
                      .||=-|++.|.   ++..+++.|++|+..+. +++..+.+.+.++.. +++..+..|+.+..-....++.+.  ..-+..
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI--DAWGTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH--HHSSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH--HHcCCC
Confidence            34555654442   34455666999987764 777777777766544 478889999988654443444333  244678


Q ss_pred             eEEEEcC
Q 023240          219 AKVVANI  225 (285)
Q Consensus       219 D~Vv~n~  225 (285)
                      |++|.|.
T Consensus        81 DiLVnnA   87 (244)
T d1edoa_          81 DVVVNNA   87 (244)
T ss_dssp             SEEEECC
T ss_pred             Ccccccc
Confidence            9999874

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.07  E-value=1.7  Score=34.77  Aligned_cols=84  Identities=14%  Similarity=0.123  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhh-hc
Q 023240          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFER-RK  213 (285)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~-~~  213 (285)
                      +++++|=.|+    |.|. .+..+++.|++|+..+.+.+-...  +..+.. .+...++.|..+..-.+..++.+.. ..
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~--~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ--RITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH--HHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH--HHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            5789999984    4675 556788889999999988654322  222222 3677888898775433333333332 13


Q ss_pred             CCCCceEEEEcCC
Q 023240          214 SSSGFAKVVANIP  226 (285)
Q Consensus       214 ~~~~~D~Vv~n~P  226 (285)
                      ..+..|.++.|.-
T Consensus        83 ~~~~ld~~i~~ag   95 (268)
T d2h7ma1          83 AGNKLDGVVHSIG   95 (268)
T ss_dssp             TTCCEEEEEECCC
T ss_pred             cCCCcceeeeccc
Confidence            4567888888743

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.18  E-value=1.9  Score=31.93  Aligned_cols=51  Identities=20%  Similarity=0.262  Sum_probs=39.3

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240          132 QLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~~~V~giD~~~~~v~~a~~~  182 (285)
                      ..+....++++++||=.|+|.-. .+..+++. +++|+++|.+++-++.+++.
T Consensus        18 ~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          18 KALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            34556678889999999998644 44555554 78999999999999988774

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=1.1  Score=36.06  Aligned_cols=76  Identities=11%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~  217 (285)
                      +++++|=.|++.|.   .+..|++.|++|+.+|++++.++...    +..+++....|.......+.   ..   ...+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~----~~~~~~~~~~d~~~~~~~~~---~~---~~~~~   74 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE----KYPGIQTRVLDVTKKKQIDQ---FA---NEVER   74 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG----GSTTEEEEECCTTCHHHHHH---HH---HHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hccCCceeeeeccccccccc---cc---ccccc
Confidence            57888888866554   45556667999999999987655433    23467777777654322211   11   23356


Q ss_pred             ceEEEEcCC
Q 023240          218 FAKVVANIP  226 (285)
Q Consensus       218 ~D~Vv~n~P  226 (285)
                      .|.+|.|..
T Consensus        75 id~lVn~ag   83 (245)
T d2ag5a1          75 LDVLFNVAG   83 (245)
T ss_dssp             CSEEEECCC
T ss_pred             ceeEEeccc
Confidence            899998744

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=83.73  E-value=1.2  Score=34.09  Aligned_cols=43  Identities=9%  Similarity=0.108  Sum_probs=28.0

Q ss_pred             HhcCCCCCEEEEEcCc---ccHHHHHHHHh-CCEEEEEeCCHHHHHH
Q 023240          136 AAAVQEGDIVLEIGPG---TGSLTNVLLNA-GATVLAIEKDQHMVGL  178 (285)
Q Consensus       136 ~l~~~~~~~VLDiGcG---~G~~t~~la~~-~~~V~giD~~~~~v~~  178 (285)
                      ...++++++||=+..|   .|..+..+|+. |++|+++=.+++..+.
T Consensus        23 ~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~   69 (189)
T d1gu7a2          23 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDE   69 (189)
T ss_dssp             SSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHH
T ss_pred             HhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccch
Confidence            3466778877777333   45677777776 8999888544444333

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=83.45  E-value=0.95  Score=36.72  Aligned_cols=85  Identities=9%  Similarity=-0.014  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccc-cccchhhhhhHHhhhcC
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV-KCHIRSHMLSLFERRKS  214 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~-~~~~~~~~~d~~~~~~~  214 (285)
                      ++++||=-|++.|.   ++..+++.|++|+.+..+.+-.+.+.+.....  .++.++..|.. +..-....++.+.+  .
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD--Q   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH--H
Confidence            57889999987665   45666777998777754332222222222222  36888888886 33222233333332  3


Q ss_pred             CCCceEEEEcCCC
Q 023240          215 SSGFAKVVANIPF  227 (285)
Q Consensus       215 ~~~~D~Vv~n~P~  227 (285)
                      -+..|++|.|.-.
T Consensus        82 ~g~iDilvnnAG~   94 (254)
T d1sbya1          82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEeCCCC
Confidence            3678999998553

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.22  E-value=1.7  Score=36.87  Aligned_cols=74  Identities=18%  Similarity=0.138  Sum_probs=43.3

Q ss_pred             CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHH----------------HHh--hcCCCeEEEEcccccc
Q 023240          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVR----------------ERF--ASIDQLKVLQEDFVKC  199 (285)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~----------------~~~--~~~~~v~~~~gD~~~~  199 (285)
                      |++||=.| |+|+++..+++    .|.+|+++|.-........                ...  ....+++++.+|+.+.
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence            46788888 59998877765    4899999993211111111                011  1124799999999876


Q ss_pred             cchhhhhhHHhhhcCCCCceEEEE
Q 023240          200 HIRSHMLSLFERRKSSSGFAKVVA  223 (285)
Q Consensus       200 ~~~~~~~d~~~~~~~~~~~D~Vv~  223 (285)
                      ..-.   .++    ....+|.|+.
T Consensus        80 ~~l~---~~~----~~~~~d~ViH   96 (393)
T d1i24a_          80 EFLA---ESF----KSFEPDSVVH   96 (393)
T ss_dssp             HHHH---HHH----HHHCCSEEEE
T ss_pred             HHHH---HHH----Hhhcchheec
Confidence            4321   222    1235688875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.15  E-value=2.7  Score=31.74  Aligned_cols=85  Identities=8%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             EEEEEcCcc-cHHHH-HHHHh-CCEEEEE-eCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240          144 IVLEIGPGT-GSLTN-VLLNA-GATVLAI-EKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (285)
Q Consensus       144 ~VLDiGcG~-G~~t~-~la~~-~~~V~gi-D~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D  219 (285)
                      +|.=||||. |..-. .+... +.+++|+ |.+++..+...+.+...+..+ +..|..++         +    .....|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~l---------l----~~~~iD   68 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTK-IHGSYESL---------L----EDPEID   68 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCE-EESSHHHH---------H----HCTTCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccccccee-ecCcHHHh---------h----hccccc
Confidence            567789984 54322 23333 5688876 888876666555443212233 23344332         1    224467


Q ss_pred             EEEEcCCCCCcHHHHHHhccCCC
Q 023240          220 KVVANIPFNISTDVIKQLLPMGD  242 (285)
Q Consensus       220 ~Vv~n~P~~~~~~i~~~l~~~g~  242 (285)
                      +|+...|.....+....++..|.
T Consensus        69 ~v~I~tp~~~h~~~~~~~l~~g~   91 (184)
T d1ydwa1          69 ALYVPLPTSLHVEWAIKAAEKGK   91 (184)
T ss_dssp             EEEECCCGGGHHHHHHHHHTTTC
T ss_pred             eeeecccchhhcchhhhhhhccc
Confidence            76655444444455554444443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.04  E-value=1.9  Score=34.65  Aligned_cols=84  Identities=14%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHH---hCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhh
Q 023240          141 EGDIVLEIGPGTGS---LTNVLLN---AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER  211 (285)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~---~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~  211 (285)
                      +++.+|=-|++.|.   ++..||+   .|++|+.++++++.++.+.+.+...   .++..+.+|+.+..-....++.+.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            35555655765544   4455565   4789999999999998887766432   2678899999886544444444332


Q ss_pred             h--cCCCCceEEEEc
Q 023240          212 R--KSSSGFAKVVAN  224 (285)
Q Consensus       212 ~--~~~~~~D~Vv~n  224 (285)
                      .  ......|+++.|
T Consensus        85 ~~~~~~~~~~~lvnn   99 (259)
T d1oaaa_          85 LPRPEGLQRLLLINN   99 (259)
T ss_dssp             SCCCTTCCEEEEEEC
T ss_pred             hhhhccCceEEEEec
Confidence            1  123456777776

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=82.76  E-value=2.3  Score=35.22  Aligned_cols=71  Identities=13%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             EEEEEcCcccHHHHHHHH----hCCEEEEEeC----CHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEK----DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~V~giD~----~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      +||=.| |+|+++..+++    .+.+|+++|.    ............  .++++++++|+.+....   ...+    ..
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l---~~~~----~~   71 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALM---TEIL----HD   71 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHH---HHHH----HH
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHH---HHHH----hc
Confidence            567677 89999888765    3889999996    233333332221  25899999999886421   1222    22


Q ss_pred             CCceEEEEc
Q 023240          216 SGFAKVVAN  224 (285)
Q Consensus       216 ~~~D~Vv~n  224 (285)
                      ..+|+||.-
T Consensus        72 ~~~d~ViHl   80 (338)
T d1udca_          72 HAIDTVIHF   80 (338)
T ss_dssp             TTCSEEEEC
T ss_pred             cCCCEEEEC
Confidence            457888853

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=82.50  E-value=1.3  Score=33.20  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             CEEEEEcCcccHH--HHHHHHhCCEEEEEeCCHHHHHHHHHH
Q 023240          143 DIVLEIGPGTGSL--TNVLLNAGATVLAIEKDQHMVGLVRER  182 (285)
Q Consensus       143 ~~VLDiGcG~G~~--t~~la~~~~~V~giD~~~~~v~~a~~~  182 (285)
                      ++|.=||+|.-..  +..|++.|.+|+.+|.+++-++.+++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~   43 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR   43 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc
Confidence            4677788886553  445566799999999999988887765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.38  E-value=1.8  Score=32.42  Aligned_cols=79  Identities=18%  Similarity=0.167  Sum_probs=49.2

Q ss_pred             CCCCCEEEEEcCcccH-HHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240          139 VQEGDIVLEIGPGTGS-LTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (285)
Q Consensus       139 ~~~~~~VLDiGcG~G~-~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~  215 (285)
                      .+++++||=+|+|... ++..+++. + ..|+++|.+++-++.+++.-    ...++..+-...      ....+. ...
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g----a~~~i~~~~~~~------~~~~~~-~~~   98 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG----ADHVVDARRDPV------KQVMEL-TRG   98 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT----CSEEEETTSCHH------HHHHHH-TTT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc----cceeecCcccHH------HHHHHh-hCC
Confidence            4678999999997554 44566654 5 58999999999988888652    234443321111      111111 344


Q ss_pred             CCceEEEEcCCCC
Q 023240          216 SGFAKVVANIPFN  228 (285)
Q Consensus       216 ~~~D~Vv~n~P~~  228 (285)
                      ..+|+||-...-.
T Consensus        99 ~g~d~vid~~g~~  111 (172)
T d1h2ba2          99 RGVNVAMDFVGSQ  111 (172)
T ss_dssp             CCEEEEEESSCCH
T ss_pred             CCceEEEEecCcc
Confidence            5689988866543