Citrus Sinensis ID: 023251

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR
cccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccEEEEEcccccccccccccccHHHHHcccccEEEEEEEcEEEEEccEEEEccccCECccccEEEEEccccEEEEEccEEEEEccEEEcccccccccccccccccccccccccccEEEEccEEEEEEcccccccccccEEEECcccEEEEEEEEEcccccEEEEccccccccccccEEEEEcccccccccccccc
*****PSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIP*
xxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SSSSSSSSSSSSSSSSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable pectate lyase 5 probableQ9FXD8
Probable pectate lyase P18 May have a role in the development of the transmitting tissue of the style and/or in the events related to pollination such as some aspect in the facilitation of compatible pollen tube growth.probableP24396
Pectate lyase Involved in the degradation of pectin. May assist in the removal and modification of an existing pectin matrix in order to allow the deposition of newly synthesized walls polymers for a specialized function or to create an architecture that is extensible.probableO24554

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
4.-.-.-Lyases.probable
4.2.-.-Carbon-oxygen lyases.probable
4.2.2.-Acting on polysaccharides.probable
4.2.2.2Pectate lyase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1PXZ, chain A
Confidence level:very confident
Coverage over the Query: 55-285
View the alignment between query and template
View the model in PyMOL