Citrus Sinensis ID: 023251

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR
cccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccEEEEEcccccccccccccccHHHHHcccccEEEEEEEcEEEEEccEEEEccccEEEccccEEEEEccccEEEEEccEEEEEccEEEcccccccccccccccccccccccccccEEEEccEEEEEEcccccccccccEEEEEcccEEEEEEEEEcccccEEEEccccccccccccEEEEEcccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHcccccccEEEccccEEEEEEccEEEEEEEcEEEccccccccccccEEEEEEccccccccccccc
MAIPSPSLSIFLLFLMTPALIlasavpdpelvVHEVHKSINASrrnlgylscgtgnpiddcwrcdpnwekNRQRLADCAIgfgknavggrdgriyvvtdpgdydvvnpkpgtlryaviqdepLWIIFARDMTIRLKEELIMNSFktidgrgasvhiaggpcitiQYVTNIIIHGlnihdckkggnamvrdsprhfgwrtvsdgdgvsifgGTHIWvdhcslsncddglvdaihgstaitisnnfmthHDKVMllghsdtytqdkNMQVTIAFNHFGeglvqripr
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSInasrrnlgylsCGTGNPIDDCWRCDPNWEKNRQRLADCAIgfgknavggrdgRIYVVTDPGDYDVVNPKPGTlryaviqdeplWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHfgeglvqripr
MAipspslsifllflMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR
*******LSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV*****
*****PS*SIFLLFLMTPALILASAVPDPELVVHEVHK**************GTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIP*
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR
*AIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV*****
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
Q9FXD8 408 Probable pectate lyase 5 yes no 0.940 0.656 0.835 1e-136
Q93Z25 432 Probable pectate lyase 22 no no 0.968 0.638 0.805 1e-134
Q9C5M8 408 Probable pectate lyase 18 no no 1.0 0.698 0.806 1e-132
Q944R1 470 Probable pectate lyase 15 no no 0.905 0.548 0.738 1e-119
O24554 401 Pectate lyase OS=Zinnia e N/A no 0.964 0.685 0.767 1e-119
Q9LTZ0 412 Putative pectate lyase 11 no no 0.978 0.677 0.739 1e-118
Q9LJ42 440 Probable pectate lyase 10 no no 0.915 0.593 0.730 1e-116
Q9M8Z8 416 Probable pectate lyase 8 no no 0.915 0.627 0.726 1e-114
Q940Q1 431 Probable pectate lyase 1 no no 0.912 0.603 0.719 1e-113
P24396 404 Probable pectate lyase P1 N/A no 0.919 0.648 0.75 1e-109
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function desciption
 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/268 (83%), Positives = 248/268 (92%)

Query: 18  PALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLAD 77
           P  I ++ V +PELVV EV++ INASRRNLG LSCGTGNPIDDCWRCDP WEKNRQRLAD
Sbjct: 22  PTFIASTPVSEPELVVQEVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLAD 81

Query: 78  CAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKE 137
           CAIGFGK+A+GGRDG+IYVVTD  D DVVNPKPGTLR+AVIQDEPLWIIFARDM I+LKE
Sbjct: 82  CAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKE 141

Query: 138 ELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGW 197
           ELIMNSFKTIDGRGASVHIAGG CIT+QYVTNIIIHG+NIHDCK+ GNA VRDSP H+GW
Sbjct: 142 ELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYGW 201

Query: 198 RTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHS 257
           RT SDGD VSIFGG+H+WVDHCSLSNC DGL+DAIHGSTAITISNN+++HH+KVMLLGHS
Sbjct: 202 RTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGHS 261

Query: 258 DTYTQDKNMQVTIAFNHFGEGLVQRIPR 285
           D+YT+DKNMQVTIAFNHFGEGLVQR+PR
Sbjct: 262 DSYTRDKNMQVTIAFNHFGEGLVQRMPR 289

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|P24396|PLY18_SOLLC Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
224136005 403 predicted protein [Populus trichocarpa] 0.943 0.667 0.895 1e-142
224121874 403 predicted protein [Populus trichocarpa] 0.943 0.667 0.888 1e-141
345104287 411 pectate lyase [Gossypium schwendimanii] 0.929 0.644 0.886 1e-140
363806820 406 uncharacterized protein LOC100779940 pre 0.943 0.662 0.870 1e-140
345104311 411 pectate lyase [Gossypium hirsutum subsp. 0.912 0.632 0.9 1e-140
284504574 411 pectate lyase [Gossypium hirsutum] 0.912 0.632 0.9 1e-140
284504570 411 pectate lyase [Gossypium herbaceum] 0.912 0.632 0.9 1e-140
284504578 411 pectate lyase [Gossypium barbadense] gi| 0.912 0.632 0.9 1e-140
345104285 411 pectate lyase [Gossypium laxum] gi|34510 0.912 0.632 0.9 1e-140
345104283 411 pectate lyase [Gossypium thurberi] gi|34 0.912 0.632 0.9 1e-140
>gi|224136005|ref|XP_002322215.1| predicted protein [Populus trichocarpa] gi|222869211|gb|EEF06342.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/269 (89%), Positives = 260/269 (96%)

Query: 17  TPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 76
           TPALI +S V DPELVV EVH++INASRR LGYLSCGTGNPIDDCWRCDPNWEKNRQRLA
Sbjct: 16  TPALISSSPVQDPELVVQEVHRAINASRRKLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 75

Query: 77  DCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK 136
           DCAIGFGKNA+GGRDG+IYVVTD G+ D VNP+PGTLR+AVIQ+EPLWIIFARDMTI+LK
Sbjct: 76  DCAIGFGKNAIGGRDGKIYVVTDSGNDDPVNPRPGTLRHAVIQEEPLWIIFARDMTIQLK 135

Query: 137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFG 196
           EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGL+IHDCK+GGNAMVRDSP+HFG
Sbjct: 136 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNAMVRDSPKHFG 195

Query: 197 WRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGH 256
           WRTVSDGDGVSIFGGTH+WVDH SLSNC+DGLVDAIHGS+AITISNN+MTHHDKVMLLGH
Sbjct: 196 WRTVSDGDGVSIFGGTHVWVDHNSLSNCNDGLVDAIHGSSAITISNNYMTHHDKVMLLGH 255

Query: 257 SDTYTQDKNMQVTIAFNHFGEGLVQRIPR 285
           SD+YTQDKNMQVTIAFNHFGEGLVQR+PR
Sbjct: 256 SDSYTQDKNMQVTIAFNHFGEGLVQRMPR 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224121874|ref|XP_002318694.1| predicted protein [Populus trichocarpa] gi|222859367|gb|EEE96914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|345104287|gb|AEN70965.1| pectate lyase [Gossypium schwendimanii] Back     alignment and taxonomy information
>gi|363806820|ref|NP_001242543.1| uncharacterized protein LOC100779940 precursor [Glycine max] gi|255641960|gb|ACU21247.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|345104311|gb|AEN70977.1| pectate lyase [Gossypium hirsutum subsp. latifolium] Back     alignment and taxonomy information
>gi|284504574|gb|ADB90477.1| pectate lyase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|284504570|gb|ADB90475.1| pectate lyase [Gossypium herbaceum] Back     alignment and taxonomy information
>gi|284504578|gb|ADB90479.1| pectate lyase [Gossypium barbadense] gi|345104291|gb|AEN70967.1| pectate lyase [Gossypium mustelinum] gi|345104295|gb|AEN70969.1| pectate lyase [Gossypium darwinii] gi|345104299|gb|AEN70971.1| pectate lyase [Gossypium tomentosum] gi|345104303|gb|AEN70973.1| pectate lyase [Gossypium barbadense var. brasiliense] gi|345104307|gb|AEN70975.1| pectate lyase [Gossypium barbadense var. peruvianum] Back     alignment and taxonomy information
>gi|345104285|gb|AEN70964.1| pectate lyase [Gossypium laxum] gi|345104323|gb|AEN70983.1| pectate lyase [Gossypium aridum] Back     alignment and taxonomy information
>gi|345104283|gb|AEN70963.1| pectate lyase [Gossypium thurberi] gi|345104289|gb|AEN70966.1| pectate lyase [Gossypium turneri] gi|345104315|gb|AEN70979.1| pectate lyase [Gossypium armourianum] gi|345104317|gb|AEN70980.1| pectate lyase [Gossypium harknessii] gi|345104329|gb|AEN70986.1| pectate lyase [Gossypium trilobum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
TAIR|locus:2121914 408 AT4G24780 [Arabidopsis thalian 0.933 0.651 0.847 1.1e-128
TAIR|locus:2008550 408 AT1G67750 [Arabidopsis thalian 0.947 0.661 0.829 3.6e-128
TAIR|locus:2161992 432 AT5G63180 [Arabidopsis thalian 0.926 0.611 0.832 7.8e-126
TAIR|locus:2086656 412 AT3G27400 [Arabidopsis thalian 0.926 0.640 0.781 1.4e-117
TAIR|locus:2005487 470 AT4G13710 [Arabidopsis thalian 0.905 0.548 0.738 1.1e-110
TAIR|locus:2093131 440 AT3G24670 [Arabidopsis thalian 0.915 0.593 0.730 4.3e-109
TAIR|locus:2154384 417 AT5G48900 [Arabidopsis thalian 0.915 0.625 0.730 3.9e-108
TAIR|locus:2197808 431 AT1G04680 [Arabidopsis thalian 0.912 0.603 0.719 1e-107
TAIR|locus:2077622 416 AT3G07010 [Arabidopsis thalian 0.915 0.627 0.726 1.7e-107
TAIR|locus:2093761 452 AT3G24230 [Arabidopsis thalian 0.915 0.577 0.685 1.8e-101
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 228/269 (84%), Positives = 252/269 (93%)

Query:    20 LILASAVPDPELVVHEVHKSINAS---RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 76
             L L+S VPDPE VV EVHKSINAS   RR LGYLSC TGNPIDDCWRCDP+WE++RQRLA
Sbjct:    21 LFLSSPVPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLA 80

Query:    77 DCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK 136
             DCAIGFGKNA+GGRDGRIYVVTD G+ + V+PKPGTLR+AV+QDEPLWIIF RDMTI+LK
Sbjct:    81 DCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLK 140

Query:   137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFG 196
             EELIMNSFKTIDGRGASVHI+GGPCITIQYVTNIIIHG++IHDCK+GGNAMVR SPRHFG
Sbjct:   141 EELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHFG 200

Query:   197 WRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGH 256
             WRT+SDGDGVSIFGG+H+WVDHCS SNC+DGL+DAI GSTAIT+SNN MTHHDKVMLLGH
Sbjct:   201 WRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGH 260

Query:   257 SDTYTQDKNMQVTIAFNHFGEGLVQRIPR 285
             SDTY++DKNMQVTIAFNHFGEGLVQR+PR
Sbjct:   261 SDTYSRDKNMQVTIAFNHFGEGLVQRMPR 289
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0006949 "syncytium formation" evidence=RCA
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FXD8PLY5_ARATH4, ., 2, ., 2, ., 20.83580.94030.6568yesno
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.76720.96490.6857N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.750.91920.6485N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00011207
hypothetical protein (558 aa)
  •  •  0.923
eugene3.00140126
hypothetical protein (514 aa)
  •  •  0.921
gw1.XIII.724.1
pectinesterase family protein (EC-3.1.1.11) (512 aa)
  •  •  0.921
eugene3.00030462
hypothetical protein (580 aa)
  •  •  0.921
eugene3.00280097
RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)
  •  •  0.919
estExt_fgenesh4_pm.C_LG_VII0457
pectinesterase family protein (EC-3.1.1.11) (340 aa)
  •  •  0.919
eugene3.00021342
hypothetical protein (514 aa)
  •  •  0.919
fgenesh4_pm.C_LG_II000883
hypothetical protein (450 aa)
  •  •  0.919
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
  •  •  0.918
fgenesh4_pg.C_LG_XIII000035
hypothetical protein (339 aa)
  •  •  0.918

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
smart00656190 smart00656, Amb_all, Amb_all domain 9e-57
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 9e-51
COG3866 345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 5e-19
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  180 bits (459), Expect = 9e-57
 Identities = 80/167 (47%), Positives = 101/167 (60%), Gaps = 28/167 (16%)

Query: 130 DMTIRLK--EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAM 187
           D+TI L     +I+NS KTIDGRG+ V I GG  +TI+ V+N+II  L IHD K      
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 188 VRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC---------DDGLVDAIHGSTAI 238
                        SDGD +SI G +++W+DH SLS C          DGL+D  +GST +
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 239 TISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR 285
           TISNN+  +H KVMLLGHSD+ T D  M+VTIA N+FG  L QR PR
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPR 150

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 98.47
PLN02218 431 polygalacturonase ADPG 98.15
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 98.12
PLN02793 443 Probable polygalacturonase 98.09
PLN02155 394 polygalacturonase 98.03
PLN03003 456 Probable polygalacturonase At3g15720 98.02
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.92
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.91
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.72
PLN03010 409 polygalacturonase 97.64
PLN02218 431 polygalacturonase ADPG 97.45
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 97.39
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.24
PLN03003 456 Probable polygalacturonase At3g15720 97.24
PLN02155 394 polygalacturonase 97.19
PLN02793 443 Probable polygalacturonase 96.97
PLN03010 409 polygalacturonase 96.83
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.79
PLN02197 588 pectinesterase 96.79
PLN02480343 Probable pectinesterase 96.79
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.75
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 96.69
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.61
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.55
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.27
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.18
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.76
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.73
PLN02176340 putative pectinesterase 94.95
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.89
PLN02682369 pectinesterase family protein 94.54
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 94.46
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.25
PLN02432293 putative pectinesterase 94.22
PLN02497331 probable pectinesterase 94.11
PLN02773317 pectinesterase 94.0
PLN02301 548 pectinesterase/pectinesterase inhibitor 93.85
PLN02304379 probable pectinesterase 93.67
PLN02634359 probable pectinesterase 93.59
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 93.56
PLN02314 586 pectinesterase 93.51
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 93.37
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 93.16
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 92.97
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 92.89
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 92.79
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 92.76
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 92.49
PLN02665366 pectinesterase family protein 92.44
PLN02916 502 pectinesterase family protein 92.43
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.42
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 92.33
PLN02313 587 Pectinesterase/pectinesterase inhibitor 92.09
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 92.09
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 91.45
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 91.4
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 91.26
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 91.05
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 90.49
PLN02671359 pectinesterase 90.12
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 89.73
smart00656190 Amb_all Amb_all domain. 89.35
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 86.36
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 86.14
PRK10531 422 acyl-CoA thioesterase; Provisional 86.07
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-45  Score=341.40  Aligned_cols=173  Identities=36%  Similarity=0.499  Sum_probs=153.8

Q ss_pred             CCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEEeC------cceEeccCeEEeccCcceEEeC
Q 023251           85 NAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK------EELIMNSFKTIDGRGASVHIAG  158 (285)
Q Consensus        85 ~ttGG~gG~v~~VT~~~d~d~~~p~pGtLr~Av~~~~P~~IvF~~~g~I~L~------~~L~v~SnkTI~G~ga~~~I~~  158 (285)
                      +||||.||.+++|.+.+|          |..+++..+|..+++-..|+|++.      .+|.+.|||||.|.|++++|. 
T Consensus        47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~-  115 (345)
T COG3866          47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV-  115 (345)
T ss_pred             CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence            799999999999999988          889999999994444445689886      456789999999999999999 


Q ss_pred             CceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEe-eCCceEEEeceeeec--------CCCCee
Q 023251          159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTHIWVDHCSLSN--------CDDGLV  229 (285)
Q Consensus       159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI-~gs~nVWIDHcs~s~--------~~Dgli  229 (285)
                      |+||.|+.+.|||||||+|++...++                ...|+|+| .+++|||||||+|+.        ..||++
T Consensus       116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~  179 (345)
T COG3866         116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV  179 (345)
T ss_pred             eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence            67999999999999999999875321                12599999 579999999999999        799999


Q ss_pred             eeecCCceEEEEcceecccCeEEEeecCCCcC-CCCceeEEEEceEEcCCCCCCCCC
Q 023251          230 DAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGLVQRIPR  285 (285)
Q Consensus       230 Dv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~-~d~~~~VT~h~N~F~~~~~~R~PR  285 (285)
                      |+++++++||||||+|++|+|+||+|.+|+.. +|+..+|||||||| +|+.||+||
T Consensus       180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~Pr  235 (345)
T COG3866         180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPR  235 (345)
T ss_pred             EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCc
Confidence            99999999999999999999999999999854 56889999999999 699999998

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
1pxz_A 346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 2e-64
3zsc_A 340 Catalytic Function And Substrate Recognition Of The 2e-11
1bn8_A 420 Bacillus Subtilis Pectate Lyase Length = 420 1e-10
2bsp_A 420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 3e-10
3krg_A 399 Structural Insights Into Substrate Specificity And 4e-10
1vbl_A 416 Structure Of The Thermostable Pectate Lyase Pl 47 L 5e-10
2nzm_A 399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 8e-10
1ooc_A 361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 2e-08
1jrg_A 361 Crystal Structure Of The R3 Form Of Pectate Lyase A 2e-08
1pcl_A 355 Unusual Structural Features In The Parallel Beta-He 1e-06
2qx3_A 330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 1e-05
2qxz_A 330 Pectate Lyase R236f From Xanthomonas Campestris Len 1e-05
2qy1_A 330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 1e-05
3vmv_A 326 Crystal Structure Of Pectate Lyase Bsp165pela From 6e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/237 (51%), Positives = 161/237 (67%), Gaps = 13/237 (5%)
Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60
Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 175 LNIHDCKKG--GNAMVRDS----PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGL 228
           L+IH C     G+ +V +S    P H       DGD +++   T+ W+DH SLS+C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 229 VDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR 285
           +D   GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR 232
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 1e-102
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 1e-72
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 8e-60
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 3e-58
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 7e-55
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 4e-50
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 9e-48
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 5e-46
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 6e-46
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 2e-40
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 4e-37
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 8e-08
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-07
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-05
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 9e-05
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 9e-05
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 5e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  300 bits (770), Expect = e-102
 Identities = 117/232 (50%), Positives = 154/232 (66%), Gaps = 3/232 (1%)

Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 175 LNIHDCKKGGNAMVRDSPR-HFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH 233
           L+IH C       V  S           DGD +++   T+ W+DH SLS+C DGL+D   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 234 GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR 285
           GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR 232
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.42
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.31
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.28
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 98.26
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.25
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.24
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 98.16
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 98.16
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.15
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.13
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.1
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.1
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 98.02
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 97.97
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.97
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.92
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 97.76
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.76
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 97.63
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.55
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.48
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.44
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 97.31
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 97.22
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.09
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.07
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.06
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.04
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.02
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 96.97
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 96.93
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.84
2inu_A 410 Insulin fructotransferase; right-handed parallel b 96.82
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 96.44
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 96.44
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 96.27
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 96.27
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.69
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 95.56
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.47
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 94.49
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 94.44
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 93.6
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 93.33
2inu_A410 Insulin fructotransferase; right-handed parallel b 93.29
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 93.17
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 93.1
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 91.81
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 90.82
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 89.45
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 88.83
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 87.64
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 87.31
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 85.31
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 82.96
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=7.5e-79  Score=579.92  Aligned_cols=230  Identities=50%  Similarity=0.940  Sum_probs=221.8

Q ss_pred             CCCCcceeccCccccccccccccCcccccCCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEE
Q 023251           55 GNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIR  134 (285)
Q Consensus        55 ~n~id~cwr~~~~w~~~r~~la~~a~GFG~~ttGG~gG~v~~VT~~~d~d~~~p~pGtLr~Av~~~~P~~IvF~~~g~I~  134 (285)
                      +||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+|+++++|+||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999877 6899999999999999999999999999999


Q ss_pred             eCcceEeccCeEEeccCcceEEeC-CceEEEeeeceEEEEeeEEEecccCCCccc-ccCCCCcCCcccCCCCcEEeeCCc
Q 023251          135 LKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDCKKGGNAMV-RDSPRHFGWRTVSDGDGVSIFGGT  212 (285)
Q Consensus       135 L~~~L~v~SnkTI~G~ga~~~I~~-G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i-~~~~~~~g~r~~~dgDaIsI~gs~  212 (285)
                      |+++|.|.|||||+|+|++++|.| |+||++++++|||||||+|+++.|.+++.| +++++|+|++...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999997 689999999999999999999999888878 999999998888999999999999


Q ss_pred             eEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEcCCCCCCCCC
Q 023251          213 HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR  285 (285)
Q Consensus       213 nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h~N~F~~~~~~R~PR  285 (285)
                      |||||||+|+|+.||++|++++|++||||||+|++|+|+||+|++|+.+.|+.|+||||||||++++.|||||
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr  232 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR  232 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCcc
Confidence            9999999999999999999999999999999999999999999999988888899999999995599999997
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1pxza_ 346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-103
d1pe9a_ 361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 7e-54
d1qcxa_ 359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-44
d1bn8a_ 399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 5e-42
d1idka_ 359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-39
d1o88a_ 353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-20
d1ia5a_ 339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-05
d1czfa_ 335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-04
d1nhca_ 336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.002
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  303 bits (776), Expect = e-103
 Identities = 117/232 (50%), Positives = 154/232 (66%), Gaps = 3/232 (1%)

Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 175 LNIHDCKKGGNAMVRDSP-RHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH 233
           L+IH C       V  S           DGD +++   T+ W+DH SLS+C DGL+D   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 234 GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR 285
           GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR 232
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 99.97
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.32
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.07
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 98.01
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.9
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.66
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 97.64
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 97.6
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.44
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.37
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.36
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 97.17
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.77
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 96.71
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 96.36
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.2
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 95.16
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.42
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.08
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 93.6
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 92.81
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 92.81
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 92.2
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 89.28
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 88.34
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 87.56
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 86.52
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=9.7e-77  Score=562.25  Aligned_cols=230  Identities=51%  Similarity=0.939  Sum_probs=209.3

Q ss_pred             CCCCcceeccCccccccccccccCcccccCCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEE
Q 023251           55 GNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIR  134 (285)
Q Consensus        55 ~n~id~cwr~~~~w~~~r~~la~~a~GFG~~ttGG~gG~v~~VT~~~d~d~~~p~pGtLr~Av~~~~P~~IvF~~~g~I~  134 (285)
                      .||||+||||||||+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            399999999999999999999999999999999999999999999987 6899999999999999999999999999999


Q ss_pred             eCcceEeccCeEEeccCcceEEeC-CceEEEeeeceEEEEeeEEEecccCCCcccccCCC-CcCCcccCCCCcEEeeCCc
Q 023251          135 LKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR-HFGWRTVSDGDGVSIFGGT  212 (285)
Q Consensus       135 L~~~L~v~SnkTI~G~ga~~~I~~-G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~-~~g~r~~~dgDaIsI~gs~  212 (285)
                      |+++|.|+|||||+|||++++|.+ |.+|++++++|||||||+|+++.+...+.+..++. +.+.+...++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999885 66799999999999999999987766555432221 2233345789999999999


Q ss_pred             eEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEcCCCCCCCCC
Q 023251          213 HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR  285 (285)
Q Consensus       213 nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h~N~F~~~~~~R~PR  285 (285)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|+++....++.++||||||+|..+..+|+||
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~  232 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR  232 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCc
Confidence            9999999999999999999999999999999999999999999999877778899999999998667778875
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure