Citrus Sinensis ID: 023277

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
cccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEEEEccHHHHHHccccccccEEEcccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEccccccccEEEEEEccccccccccEEEEcccEEEEEccccEEEEEEcccccccEEEEEEEEEccccccccccccccccEEEEEEccEEEccccEEEEEEEEEcccccccccEEEEEEEccEEEEEc
cccccccccHHcccEcccccccEEcccEEEHEHHHHHHEEEcccccEEEEHEEEEEEEEEEEccccccEcccccEEEEEcccccccccEEEEEccEEEEEEEEcccccccEEEEccccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEccccEEEEEc
mevtqrppmavTNAVSWRsegiqykknevFLDVVEHVNILVNSNGQIIRSDVVGALKMRTylsgmpecklglndrILLEAqgrstkgkaidlddikfhQCVRLArfendrtisfippdgsfdlmTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQfkerstatnveielpvssdasnpdvrtsmgsasyvpedEALIWKIrsfpggkeymlraeftlpsitaeeatperkapirvkfeipyftvsGIQVRYLKIIEKsgyhalpwVRYITMAGEYELRLI
mevtqrppmavtnavswrsegiQYKKNEVFLDVVEHVNILvnsngqiirsdVVGALKMRTYLSGMPECKLGLNDRILLEAQGRstkgkaidlddiKFHQCVRLarfendrtisfippdgsFDLMTYRLNTQVKPLIWVEAqverhsrsrvEILVKarsqfkerstatnveielpvssdasnpdvRTSMGsasyvpedeaLIWKIRSFPGGKEYMLRAEFTlpsitaeeatperkapirvkfeipyftvsgIQVRYLKIIEKsgyhalpwvrYITMAGEYELRLI
MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
***********TNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILV******************************************DEALIWKIRSFPGGKEYMLRAEFTLPSITA*******KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYEL***
********************GIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR***************DLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAE*****************PIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
**********VTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
*****RPPMA*TNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
P35602422 AP-1 complex subunit mu-1 yes no 0.968 0.651 0.665 1e-115
Q32Q06423 AP-1 complex subunit mu-1 yes no 0.964 0.647 0.671 1e-115
P35585423 AP-1 complex subunit mu-1 yes no 0.964 0.647 0.667 1e-115
Q9BXS5423 AP-1 complex subunit mu-1 yes no 0.964 0.647 0.667 1e-115
Q2KJ81423 AP-1 complex subunit mu-1 yes no 0.964 0.647 0.667 1e-115
Q3SYW1423 AP-1 complex subunit mu-2 no no 0.964 0.647 0.671 1e-113
Q9WVP1423 AP-1 complex subunit mu-2 no no 0.964 0.647 0.671 1e-112
Q9Y6Q5423 AP-1 complex subunit mu-2 no no 0.964 0.647 0.671 1e-112
Q54HS9428 AP-1 complex subunit mu O yes no 0.961 0.637 0.633 1e-105
Q9HFE5426 AP-1 complex subunit mu-1 yes no 0.971 0.647 0.582 1e-102
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2 Back     alignment and function desciption
 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 185/278 (66%), Positives = 233/278 (83%), Gaps = 3/278 (1%)

Query: 6   RPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGM 65
           RPPMAVTNAVSWRSEGI+Y+KNEVFLDV+E VN+L ++NG +++S++VG++KMR YL+GM
Sbjct: 147 RPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNMLASANGTVLQSEIVGSVKMRVYLTGM 206

Query: 66  PECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMT 125
           PE +LGLND++L E  GR  K K+++L+D+KFHQCVRL+RF+ DRTISFIPPDG+F+LM+
Sbjct: 207 PELRLGLNDKVLFEGSGRG-KSKSVELEDVKFHQCVRLSRFDTDRTISFIPPDGAFELMS 265

Query: 126 YRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVR 185
           YRL T VKPLIW+E  +ERHS SRV  ++KA+SQFK RSTA NVEI +PV SDA +P  +
Sbjct: 266 YRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFK 325

Query: 186 TSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPY 245
           TS+GS  Y PE  A +W I++FPGGKEY+L A  +LPS+ +EE+  E + PI+VKFEIPY
Sbjct: 326 TSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEES--EGRPPIKVKFEIPY 383

Query: 246 FTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRL 283
           FT SGIQVRYLKIIEKSGY ALPWVRYIT  GEYE+R+
Sbjct: 384 FTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMRM 421
Required for many aspects of development and behavior, including negative regulation of vulval differentiation.
Caenorhabditis elegans (taxid: 6239)
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q3SYW1|AP1M2_BOVIN AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3 Back     alignment and function description
>sp|Q9WVP1|AP1M2_MOUSE AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6Q5|AP1M2_HUMAN AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4 Back     alignment and function description
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1 Back     alignment and function description
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apm1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
225470599 428 PREDICTED: AP-1 complex subunit mu-1 [Vi 1.0 0.663 0.926 1e-156
224107797 428 predicted protein [Populus trichocarpa] 1.0 0.663 0.922 1e-156
343172625 428 AP-1 complex subunit mu, partial [Silene 1.0 0.663 0.915 1e-155
255540561 428 clathrin coat assembly protein ap-1, put 1.0 0.663 0.919 1e-155
449434961 428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 0.663 0.922 1e-155
449478746 428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 0.663 0.922 1e-154
297843902 428 clathrin adaptor complexes medium subuni 1.0 0.663 0.911 1e-154
255573987309 clathrin coat assembly protein ap-1, put 1.0 0.919 0.919 1e-154
356501761 428 PREDICTED: AP-1 complex subunit mu-1-I-l 1.0 0.663 0.926 1e-154
15219810 428 AP-1 complex subunit mu [Arabidopsis tha 1.0 0.663 0.908 1e-154
>gi|225470599|ref|XP_002274463.1| PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera] gi|296083422|emb|CBI23375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/284 (92%), Positives = 278/284 (97%)

Query: 1   MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRT 60
           MEV+QRPPMAVTNAVSWRSEGI+YKKNEVFLDVVE VNILVNSNGQIIRSDVVGALKMRT
Sbjct: 145 MEVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRT 204

Query: 61  YLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGS 120
           YLSGMPECKLGLNDR+LLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGS
Sbjct: 205 YLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGS 264

Query: 121 FDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDAS 180
           FDLMTYRL+TQVKPLIWVEAQVERHSRSR+EI+VKARSQFKERSTATNVEIELPV SDA+
Sbjct: 265 FDLMTYRLSTQVKPLIWVEAQVERHSRSRIEIMVKARSQFKERSTATNVEIELPVPSDAT 324

Query: 181 NPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVK 240
           NP++RTSMGSA+Y PE++AL+WKI+SFPGGKEYMLRAEF+LPSITAEE  PERKAPIRVK
Sbjct: 325 NPNIRTSMGSAAYAPENDALLWKIKSFPGGKEYMLRAEFSLPSITAEEGAPERKAPIRVK 384

Query: 241 FEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI 284
           FEIPYFTVSGIQVRYLKIIEKSGY ALPWVRYITMAGEYELRLI
Sbjct: 385 FEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107797|ref|XP_002314604.1| predicted protein [Populus trichocarpa] gi|222863644|gb|EEF00775.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|343172625|gb|AEL99016.1| AP-1 complex subunit mu, partial [Silene latifolia] gi|343172627|gb|AEL99017.1| AP-1 complex subunit mu, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|255540561|ref|XP_002511345.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] gi|223550460|gb|EEF51947.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434961|ref|XP_004135264.1| PREDICTED: AP-1 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478746|ref|XP_004155408.1| PREDICTED: AP-1 complex subunit mu-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|297843902|ref|XP_002889832.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297335674|gb|EFH66091.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255573987|ref|XP_002527911.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] gi|223532686|gb|EEF34468.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356501761|ref|XP_003519692.1| PREDICTED: AP-1 complex subunit mu-1-I-like [Glycine max] Back     alignment and taxonomy information
>gi|15219810|ref|NP_176277.1| AP-1 complex subunit mu [Arabidopsis thaliana] gi|2462748|gb|AAB71967.1| putative Clathrin Coat Assembly protein [Arabidopsis thaliana] gi|20466372|gb|AAM20503.1| clathrin adaptor medium chain protein MU1B, putative [Arabidopsis thaliana] gi|25084014|gb|AAN72155.1| clathrin adaptor medium chain protein MU1B, putative [Arabidopsis thaliana] gi|332195610|gb|AEE33731.1| AP-1 complex subunit mu [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2036606428 HAP13 "HAPLESS 13" [Arabidopsi 1.0 0.663 0.908 1.9e-138
TAIR|locus:2019913428 AT1G10730 [Arabidopsis thalian 1.0 0.663 0.855 1.1e-128
FB|FBgn0024833426 AP-1mu "Adaptor Protein comple 0.985 0.657 0.677 9.2e-107
UNIPROTKB|Q2KJ81423 AP1M1 "AP-1 complex subunit mu 0.964 0.647 0.667 2e-104
UNIPROTKB|J9P1I0423 AP1M1 "Uncharacterized protein 0.964 0.647 0.667 2e-104
UNIPROTKB|B4DDG7351 AP1M1 "AP-1 complex subunit mu 0.964 0.780 0.667 2e-104
UNIPROTKB|K7EJL1351 AP1M1 "AP-1 complex subunit mu 0.964 0.780 0.667 2e-104
UNIPROTKB|Q9BXS5423 AP1M1 "AP-1 complex subunit mu 0.964 0.647 0.667 2e-104
UNIPROTKB|F2Z5I7423 AP1M1 "Uncharacterized protein 0.964 0.647 0.667 2e-104
RGD|1307653423 Ap1m1 "adaptor-related protein 0.964 0.647 0.671 2e-104
TAIR|locus:2036606 HAP13 "HAPLESS 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
 Identities = 258/284 (90%), Positives = 276/284 (97%)

Query:     1 MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRT 60
             MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDV+E+VNILVNSNGQI+RSDVVGALKMRT
Sbjct:   145 MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIENVNILVNSNGQIVRSDVVGALKMRT 204

Query:    61 YLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGS 120
             YL+GMPECKLGLNDR+LLEAQGR+TKGKAIDL+DIKFHQCVRLARFENDRTISFIPPDG+
Sbjct:   205 YLTGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGA 264

Query:   121 FDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDAS 180
             FDLMTYRL+TQVKPLIWVEAQ+E HSRSRVE+L+KARSQFKERSTATNVEIELPV +DAS
Sbjct:   265 FDLMTYRLSTQVKPLIWVEAQIESHSRSRVEMLIKARSQFKERSTATNVEIELPVPTDAS 324

Query:   181 NPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVK 240
             NP VRTS+GSASY PE +AL+WKI+SFPG KEYMLRAEF LPSITAEEATPERKAPIRVK
Sbjct:   325 NPTVRTSLGSASYAPEKDALVWKIKSFPGNKEYMLRAEFHLPSITAEEATPERKAPIRVK 384

Query:   241 FEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI 284
             FEIPYFTVSGIQVRYLKIIEKSGY ALPWVRYITMAGEYELRL+
Sbjct:   385 FEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV 428
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2019913 AT1G10730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0024833 AP-1mu "Adaptor Protein complex 1, mu subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ81 AP1M1 "AP-1 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1I0 AP1M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DDG7 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7EJL1 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXS5 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5I7 AP1M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307653 Ap1m1 "adaptor-related protein complex 1, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35585AP1M1_MOUSENo assigned EC number0.66780.96470.6477yesno
Q54HS9AP1M_DICDINo assigned EC number0.63300.96120.6378yesno
P35602AP1M_CAEELNo assigned EC number0.66540.96830.6516yesno
Q32Q06AP1M1_RATNo assigned EC number0.67140.96470.6477yesno
Q9BXS5AP1M1_HUMANNo assigned EC number0.66780.96470.6477yesno
Q2KJ81AP1M1_BOVINNo assigned EC number0.66780.96470.6477yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.58270.97180.6478yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009485001
SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (428 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002570001
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (903 aa)
    ••• 0.705
GSVIVG00028856001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (822 aa)
    ••• 0.564

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 0.0
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 1e-160
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-146
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-119
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 4e-94
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 3e-85
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 8e-77
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 1e-58
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 1e-34
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 2e-33
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 1e-28
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 8e-18
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 1e-16
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 4e-09
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information 
 Score =  510 bits (1317), Expect = 0.0
 Identities = 197/268 (73%), Positives = 235/268 (87%), Gaps = 1/268 (0%)

Query: 12  TNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLG 71
           TNAVSWR EGI+YKKNEVFLDV+E VN+LV+ NGQ++RS++VG +KMR+YLSGMPE KLG
Sbjct: 1   TNAVSWRPEGIKYKKNEVFLDVIESVNLLVDLNGQVLRSEIVGTIKMRSYLSGMPELKLG 60

Query: 72  LNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQ 131
           LND++L EA GRS+KGKA++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRL+TQ
Sbjct: 61  LNDKVLFEATGRSSKGKAVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLSTQ 120

Query: 132 VKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSA 191
           VKPLIWVE  VERHSRSRVEI+VKA++QFK RSTA NVEI +PV  DA +P  + S GS 
Sbjct: 121 VKPLIWVEPTVERHSRSRVEIMVKAKTQFKRRSTANNVEIRIPVPPDADSPRFKCSAGSV 180

Query: 192 SYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATP-ERKAPIRVKFEIPYFTVSG 250
            Y PE +AL+WKI+SFPGGKE+ +RAEF LPSI +EE    E+KAPI+VKFEIPYFTVSG
Sbjct: 181 VYAPEKDALLWKIKSFPGGKEFSMRAEFGLPSIESEEEQGTEKKAPIQVKFEIPYFTVSG 240

Query: 251 IQVRYLKIIEKSGYHALPWVRYITMAGE 278
           +QVRYLKIIEKSGY ALPWVRYIT +G+
Sbjct: 241 LQVRYLKIIEKSGYQALPWVRYITQSGD 268

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1 subunit, which includes two closely related homologs, mu1A (encoded by ap1m1) and mu1B (encoded by ap1m2). Mu1A is ubiquitously expressed, but mu1B is expressed exclusively in polarized epithelial cells. AP-1 has been implicated in bi-directional transport between the trans-Golgi network (TGN) and endosomes. It plays an essential role in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). Epithelial cell-specific AP-1 is also involved in sorting to the basolateral surface of polarized epithelial cells. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 268
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 99.93
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.16
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-73  Score=498.74  Aligned_cols=272  Identities=46%  Similarity=0.824  Sum_probs=251.1

Q ss_pred             CCcccccccccCCCCcccceEEEEEEEeEEEEEcCCCCEEEEEEEEEEEEEEEecCCCeEEEEEccchhhhh-c------
Q 023277            9 MAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEA-Q------   81 (284)
Q Consensus         9 ~~~~~~~~WR~~~~~~~~neI~vdV~E~l~~~~~~~G~v~~~~V~G~v~~~s~LsG~P~~~l~ln~~~~~~~-~------   81 (284)
                      ...+++++||+.|++|++||+|+||+|++|.+++++|++++++|.|.|.|+++|||||+|+++|||...+++ +      
T Consensus       160 sqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~  239 (446)
T KOG0938|consen  160 SQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSD  239 (446)
T ss_pred             cccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeecccccccc
Confidence            455679999999999999999999999999999999999999999999999999999999999999987652 1      


Q ss_pred             -cCC-----CCCceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCcCcEEEEEEEEEccceEEEEEEE
Q 023277           82 -GRS-----TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVK  155 (284)
Q Consensus        82 -~~~-----~~~~~~~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~F~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~  155 (284)
                       ||.     ++...+.|+||.||+||++++|++++.|+|+||||+|+||+||++.++..||.|.|.++..+.+++||.+.
T Consensus       240 ~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r~kie~ri~  319 (446)
T KOG0938|consen  240 FGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGRTKIEYRIT  319 (446)
T ss_pred             ccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeheecccceeEEEEEE
Confidence             111     24456899999999999999999999999999999999999999999866667889988888889999999


Q ss_pred             eccCCCCcceeeeEEEEEcCCCCCCcceEEecceeEEEeCCCCEEEEEeceecCCCeeEEEEEEEecCCC-CCCCCCCCC
Q 023277          156 ARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSIT-AEEATPERK  234 (284)
Q Consensus       156 ~~~~~~~~~~~~~v~i~iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~-~~~~~~~~~  234 (284)
                      +++.|++++.+.+|.++||+|+++..+.++++.|.++|.+.+++++|+|+++.|.+|.+|++++++.+.. +...|  ..
T Consensus       320 iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~W--tr  397 (446)
T KOG0938|consen  320 IKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQW--TR  397 (446)
T ss_pred             EeccCCchhhhcceEEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEEeccCccccccc--cC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998765 44557  78


Q ss_pred             CcEEEEEEECcccccccEEEEEEEEE-cCCCccccceEEEEEeCcEEEE
Q 023277          235 APIRVKFEIPYFTVSGIQVRYLKIIE-KSGYHALPWVRYITMAGEYELR  282 (284)
Q Consensus       235 ~pi~l~F~ip~~t~SGl~V~~l~v~~-~~~~~~~k~vrY~t~sg~Y~~R  282 (284)
                      +||+|+|++|+++.|||.|++++|.+ +++|+..|||||+|+||+||+|
T Consensus       398 PPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  398 PPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             CCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence            99999999999999999999999999 5889999999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-115
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-111
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-107
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-59
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 1e-59
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-59
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-58
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-58
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 4e-58
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-56
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 2e-53
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 4e-30
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 4e-30
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure 
Iteration: 1

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 184/277 (66%), Positives = 235/277 (84%), Gaps = 3/277 (1%)
Query: 6   RPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGM 65
           RPP  VTNAVSWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++KMR +LSGM
Sbjct: 148 RPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGM 207
Query: 66  PECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMT 125
           PE +LGLND++L +  GR  K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+
Sbjct: 208 PELRLGLNDKVLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMS 266
Query: 126 YRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVR 185
           YRLNT VKPLIW+E+ +E+HS SR+E +VKA+SQFK RSTA NVEI +PV +DA +P  +
Sbjct: 267 YRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFK 326
Query: 186 TSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPY 245
           T++GS  +VPE+  ++W ++SFPGGKEY++RA F LPS+ AE+   E K PI VKFEIPY
Sbjct: 327 TTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDK--EGKPPISVKFEIPY 384
Query: 246 FTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 282
           FT SGIQVRYLKIIEKSGY A+PWVRYIT  G+Y+LR
Sbjct: 385 FTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLR 421
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 3e-98
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 1e-96
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 8e-96
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 3e-90
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 4e-90
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 2e-88
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
 Score =  288 bits (738), Expect = 3e-98
 Identities = 177/267 (66%), Positives = 227/267 (85%), Gaps = 3/267 (1%)

Query: 16  SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR 75
           SWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+
Sbjct: 1   SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDK 60

Query: 76  ILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPL 135
           +L +  GR  K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRLNT VKPL
Sbjct: 61  VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPL 119

Query: 136 IWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVP 195
           IW+E+ +E+HS SR+E +VKA+SQFK RSTA NVEI +PV +DA +P  +T++GS  +VP
Sbjct: 120 IWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVP 179

Query: 196 EDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRY 255
           E+  ++W ++SFPGGKEY++RA F LPS+ AE+   E K PI VKFEIPYFT SGIQVRY
Sbjct: 180 ENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAED--KEGKPPISVKFEIPYFTTSGIQVRY 237

Query: 256 LKIIEKSGYHALPWVRYITMAGEYELR 282
           LKIIEKSGY ALPWVRYIT  G+Y+LR
Sbjct: 238 LKIIEKSGYQALPWVRYITQNGDYQLR 264
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.16
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
Probab=100.00  E-value=2.4e-75  Score=532.28  Aligned_cols=277  Identities=41%  Similarity=0.782  Sum_probs=236.4

Q ss_pred             cCCCCCCcccccccccCCCCcccceEEEEEEEeEEEEEcCCCCEEEEEEEEEEEEEEEecCCCeEEEEEccchhhhhccC
Q 023277            4 TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGR   83 (284)
Q Consensus         4 ~~~~~~~~~~~~~WR~~~~~~~~neI~vdV~E~l~~~~~~~G~v~~~~V~G~v~~~s~LsG~P~~~l~ln~~~~~~~~~~   83 (284)
                      +.+++++.++++|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|||+|+|+||+...++..+.
T Consensus        27 ~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~  106 (314)
T 1i31_A           27 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK  106 (314)
T ss_dssp             -----------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEEEEEECSSSCEEEEEESCCC-------
T ss_pred             ccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEcCCCCeEEEEECCchhcccccc
Confidence            44677889999999999999999999999999999999999999999999999999999999999999999866543321


Q ss_pred             C-------CCCceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCcCcEEEEEEEEEccceEEEEEEEe
Q 023277           84 S-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKA  156 (284)
Q Consensus        84 ~-------~~~~~~~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~F~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~~  156 (284)
                      .       ....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+|+.+.|++...+++++||++++
T Consensus       107 ~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lP~~v~~~~~~~g~~~iE~~l~~  186 (314)
T 1i31_A          107 GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVI  186 (314)
T ss_dssp             ----------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEE
T ss_pred             ccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecCCcCCCEEEEEEEEecCCcEEEEEEEE
Confidence            0       012457799999999999999999999999999999999999999888788889999987666799999999


Q ss_pred             ccCCCCcceeeeEEEEEcCCCCCCcceEEecceeEEEeCCCCEEEEEeceecCCCeeEEEEEEEecCCCCCCCCCCCCCc
Q 023277          157 RSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAP  236 (284)
Q Consensus       157 ~~~~~~~~~~~~v~i~iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~p  236 (284)
                      +++|+....++||.|+||+|..+..+.++++.|+++|++++++|+|+|++++++++++++|+++|.+....+.+  .++|
T Consensus       187 ~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~~e~~l~~~~~l~s~~~~~~~--~~~p  264 (314)
T 1i31_A          187 KSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPP  264 (314)
T ss_dssp             EECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESSEEEEEEEEEEECCCCSSSCC--CCCC
T ss_pred             ccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCCCcEEEEEEEEecCCCcCCcc--CCCc
Confidence            99999888999999999999999999999999999999999999999999999999999999999875323334  6999


Q ss_pred             EEEEEEECcccccccEEEEEEEEEc----CCCccccceEEEEEeCcEEEEe
Q 023277          237 IRVKFEIPYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL  283 (284)
Q Consensus       237 i~l~F~ip~~t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~  283 (284)
                      |+|+|++| +++|||+|++|++.++    ++|+|+|||||+|+||+|++|+
T Consensus       265 i~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~R~  314 (314)
T 1i31_A          265 ISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  314 (314)
T ss_dssp             EEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEECC
T ss_pred             EEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEEEcC
Confidence            99999999 9999999999999886    5899999999999999999995
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 1e-101
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  296 bits (759), Expect = e-101
 Identities = 112/279 (40%), Positives = 169/279 (60%), Gaps = 14/279 (5%)

Query: 15  VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND 74
           + WR EGI+Y++NE+FLDV+E VN+L++  GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 75  RILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 127
           +I++E QG+        +  ++I +DD  FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 128 LNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTS 187
               +     V   V    R+++E+ V  +S FK    A  +E+ +P   + S   V   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 188 MGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT 247
            G A Y   + A++WKI+   G KE  + AE  L     ++     + PI + FE+P F 
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK--KWARPPISMNFEVP-FA 237

Query: 248 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR 282
            SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct: 238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.7e-71  Score=493.41  Aligned_cols=266  Identities=42%  Similarity=0.809  Sum_probs=233.1

Q ss_pred             cccccCCCCcccceEEEEEEEeEEEEEcCCCCEEEEEEEEEEEEEEEecCCCeEEEEEccchhhhhccC-------CCCC
Q 023277           15 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGR-------STKG   87 (284)
Q Consensus        15 ~~WR~~~~~~~~neI~vdV~E~l~~~~~~~G~v~~~~V~G~v~~~s~LsG~P~~~l~ln~~~~~~~~~~-------~~~~   87 (284)
                      ||||+.|++|++|||||||+|+|+++++++|.+++++|+|+|.|+|+|+|+|+|+|+||++..++....       .+..
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            799999999999999999999999999999999999999999999999999999999999876544211       1245


Q ss_pred             ceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCcCcEEEEEEEEEccceEEEEEEEeccCCCCcceee
Q 023277           88 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTAT  167 (284)
Q Consensus        88 ~~~~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~F~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~  167 (284)
                      .++.|+||+||+||+++.|++++.|+|+||||+|+||+||++....+|+.+.+.+...+++++++.++++++++....++
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~  160 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  160 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeee
Confidence            67889999999999999999999999999999999999999887777777788887777778999999999999888999


Q ss_pred             eEEEEEcCCCCCCcceEEecceeEEEeCCCCEEEEEeceecCCCeeEEEEEEEecCCCCCCCCCCCCCcEEEEEEECccc
Q 023277          168 NVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT  247 (284)
Q Consensus       168 ~v~i~iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~pi~l~F~ip~~t  247 (284)
                      +|.|+||+|..+..+.++++.|+++|+.++++++|+|++++++++++|+|++++.+......+  .++||+|+|++| ++
T Consensus       161 ~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~--~~~pi~v~F~ip-~t  237 (277)
T d2pr9a1         161 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FA  237 (277)
T ss_dssp             EEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-SC
T ss_pred             EEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCccc--cCCcEEEEEEec-cc
Confidence            999999999999999999999999999999999999999999999999999999876554444  789999999999 89


Q ss_pred             ccccEEEEEEEEEc----CCCccccceEEEEEeCcEEEEe
Q 023277          248 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL  283 (284)
Q Consensus       248 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~  283 (284)
                      +|||+|++|+|.+.    ++|+|+|||||+|+||+|++|.
T Consensus       238 ~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             TTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            99999999999873    3589999999999999999994