Citrus Sinensis ID: 023279

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MEITGLKFIADTANLLSNTAHSDKKSKMVNPDSKEEDSMSLVDSSGPDEFLTAVNRRSVADDVELEIFAERGKKESDESNPMIPEQHEETKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSLY
ccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccEEEccccccEEEEEccccccccccccEEEEcccccHHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccEEEEEccccccEEHccccEEccccccccccccccccHHHHHHcccEEEc
cccccEEEEEccccccccccccccccccccccccEccccccccccccccccccHEEEEccccccccccccccccccccccccccccccccccccccccccccEcEEcccccccHHHHHHHHcHHHccccHHHcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccEEEEEEcccccEEEEccccEEEcccccccccccHHHHHHHHHcccEEEc
MEITGLKFIADTANLlsntahsdkkskmvnpdskeedsmslvdssgpdefltavnrrsvaddVELEIFAErgkkesdesnpmipeqHEETKRAVIQldqvprwgvnsvcgkrpemedAVAVIPAFLQIQTHVLMdtvtdqfpdqVLVHFFGvydghggcqvANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVdseiggalggepvapetagstAVVAIISPTLIIVAncgdsravlcrgkvpvplsvdhkvgtnappppprlhnliaqsly
MEITGLKFIADTanllsntahsdkkskmvnpdskeedsmSLVDSSGPDEFLTavnrrsvaddvELEIFaergkkesdesnpmIPEQHEETKRAviqldqvprWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSvdhkvgtnappppprlhnliaqsly
MEITGLKFIADTANLLSNTAHSDKKSKMVNPDSKEEDSMSLVDSSGPDEFLTAVNRRSVADDVELEIFAERGKKESDESNPMIPEQHEETKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSLY
*******FI***********************************************************************************AVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLS*************************
***TGLKFIA*****************************************************************************************VPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTD*FPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELV*************EQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSLY
MEITGLKFIADTANLLSNTA************************SGPDEFLTAVNRRSVADDVELEIFAERG*************QHEETKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSLY
**ITGLKFIADTANL**********************************************************************************DQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSLY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEITGLKFIADTANLLSNTAHSDKKSKMVNPDSKEEDSMSLVDSSGPDEFLTAVNRRSVADDVELEIFAERGKKESDESNPMIPEQHEETKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
O04719 423 Protein phosphatase 2C 77 yes no 0.640 0.430 0.573 9e-58
P49597 434 Protein phosphatase 2C 56 no no 0.573 0.375 0.610 2e-56
Q0JLP9 467 Probable protein phosphat yes no 0.591 0.359 0.540 4e-47
Q6L4R7 445 Probable protein phosphat no no 0.633 0.404 0.494 7e-46
Q9LNP9 511 Protein phosphatase 2C 7 no no 0.834 0.463 0.416 2e-44
Q9CAJ0 511 Protein phosphatase 2C 16 no no 0.605 0.336 0.502 4e-42
Q6L5H6 387 Probable protein phosphat no no 0.609 0.447 0.439 9e-37
Q9LNW3 442 Protein phosphatase 2C 3 no no 0.538 0.346 0.435 6e-34
Q9ZW21 362 Probable protein phosphat no no 0.5 0.392 0.451 4e-32
Q5SN75 403 Probable protein phosphat no no 0.573 0.404 0.466 1e-31
>sp|O04719|P2C77_ARATH Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1 Back     alignment and function desciption
 Score =  223 bits (569), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 113/197 (57%), Positives = 137/197 (69%), Gaps = 15/197 (7%)

Query: 76  SDESNPMIPEQHEET------KRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQ 129
           SDE +P    Q E+        R++ +   VP +GV S+CG+RPEMED+V+ IP FLQ+ 
Sbjct: 80  SDEFDPRSMNQSEKKVLSRTESRSLFEFKCVPLYGVTSICGRRPEMEDSVSTIPRFLQVS 139

Query: 130 THVLMD-TVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGG 188
           +  L+D  VT+ F   +  HFFGVYDGHGG QVANYC ERMHLAL EE+V  K    DG 
Sbjct: 140 SSSLLDGRVTNGFNPHLSAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGD 199

Query: 189 SWQEQWKKAFANSFLKVDSEIGGALGGEPV--APETAGSTAVVAIISPTLIIVANCGDSR 246
           +WQE+WKKA  NSF++VDSEI      E V  APET GST+VVA++ PT I VANCGDSR
Sbjct: 200 TWQEKWKKALFNSFMRVDSEI------ETVAHAPETVGSTSVVAVVFPTHIFVANCGDSR 253

Query: 247 AVLCRGKVPVPLSVDHK 263
           AVLCRGK P+ LSVDHK
Sbjct: 254 AVLCRGKTPLALSVDHK 270
Repressor of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, osmotic water permeability of the plasma membrane (Pos), high light stress, response to glucose, seed germination and inhibition of vegetative growth. During the stomatal closure regulation, modulates the inward calcium-channel permeability as well as H(2)O(2) and oxidative burst in response to ABA and dehydration. Controls negatively fibrillin that is involved in mediating ABA-induced photoprotection. May be implicated in ABA content regulation. Involved in acquired thermotolerance of root growth and seedling survival. Required for the Erwinia amylovora harpin-induced (HrpN) drought tolerance. Involved in the hydrotropic response.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|P49597|P2C56_ARATH Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2 Back     alignment and function description
>sp|Q0JLP9|P2C06_ORYSJ Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1 Back     alignment and function description
>sp|Q6L4R7|P2C53_ORYSJ Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNP9|P2C07_ARATH Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2 Back     alignment and function description
>sp|Q9CAJ0|P2C16_ARATH Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1 Back     alignment and function description
>sp|Q6L5H6|P2C50_ORYSJ Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNW3|P2C03_ARATH Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZW21|P2C24_ARATH Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1 Back     alignment and function description
>sp|Q5SN75|P2C08_ORYSJ Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
297793221 433 hypothetical protein ARALYDRAFT_495797 [ 0.584 0.383 0.617 1e-56
144225753 538 abscisic insensitive 1B [Populus tremula 0.602 0.317 0.622 2e-56
144225745 538 abscisic insensitive 1B [Populus tremula 0.602 0.317 0.622 2e-56
144225733 538 abscisic insensitive 1B [Populus tremula 0.602 0.317 0.622 2e-56
144225737 538 abscisic insensitive 1B [Populus tremula 0.602 0.317 0.622 2e-56
144225721 538 abscisic insensitive 1B [Populus tremula 0.602 0.317 0.622 2e-56
339777479 548 abscisic acid insensitivity 1B [Populus 0.602 0.312 0.616 3e-56
339777473 548 abscisic acid insensitivity 1B [Populus 0.602 0.312 0.616 3e-56
144225719 538 abscisic insensitive 1B [Populus tremula 0.602 0.317 0.622 3e-56
144225729 538 abscisic insensitive 1B [Populus tremula 0.602 0.317 0.622 3e-56
>gi|297793221|ref|XP_002864495.1| hypothetical protein ARALYDRAFT_495797 [Arabidopsis lyrata subsp. lyrata] gi|297310330|gb|EFH40754.1| hypothetical protein ARALYDRAFT_495797 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/175 (61%), Positives = 131/175 (74%), Gaps = 9/175 (5%)

Query: 92  RAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMD-TVTDQFPDQVLVHFF 150
           R++ +   VP +GV S+CG+RPEMED+V+ IP FLQ+ ++ L+D  VT+ F   +  HFF
Sbjct: 112 RSLFEFKSVPLYGVTSICGRRPEMEDSVSTIPRFLQVSSNSLLDGRVTNGFNPHLSAHFF 171

Query: 151 GVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIG 210
           GVYDGHGG QVANYC ERMHLAL EE+V  K    DG +WQE+WKKA  NSF++VDSEI 
Sbjct: 172 GVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSEI- 230

Query: 211 GALGGEPV--APETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
                EPV  APET GST+VVA++ PT I VANCGDSRAVLCRGK P+ LSVDHK
Sbjct: 231 -----EPVAHAPETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHK 280

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|144225753|emb|CAM84273.1| abscisic insensitive 1B [Populus tremula] Back     alignment and taxonomy information
>gi|144225745|emb|CAM84269.1| abscisic insensitive 1B [Populus tremula] gi|144225755|emb|CAM84274.1| abscisic insensitive 1B [Populus tremula] Back     alignment and taxonomy information
>gi|144225733|emb|CAM84263.1| abscisic insensitive 1B [Populus tremula] Back     alignment and taxonomy information
>gi|144225737|emb|CAM84265.1| abscisic insensitive 1B [Populus tremula] Back     alignment and taxonomy information
>gi|144225721|emb|CAM84257.1| abscisic insensitive 1B [Populus tremula] Back     alignment and taxonomy information
>gi|339777479|gb|AEK05577.1| abscisic acid insensitivity 1B [Populus balsamifera] Back     alignment and taxonomy information
>gi|339777473|gb|AEK05574.1| abscisic acid insensitivity 1B [Populus balsamifera] gi|339777477|gb|AEK05576.1| abscisic acid insensitivity 1B [Populus balsamifera] gi|339777485|gb|AEK05580.1| abscisic acid insensitivity 1B [Populus balsamifera] gi|339777495|gb|AEK05585.1| abscisic acid insensitivity 1B [Populus balsamifera] gi|339777501|gb|AEK05588.1| abscisic acid insensitivity 1B [Populus balsamifera] Back     alignment and taxonomy information
>gi|144225719|emb|CAM84256.1| abscisic insensitive 1B [Populus tremula] gi|144225731|emb|CAM84262.1| abscisic insensitive 1B [Populus tremula] gi|144225739|emb|CAM84266.1| abscisic insensitive 1B [Populus tremula] gi|144225741|emb|CAM84267.1| abscisic insensitive 1B [Populus tremula] Back     alignment and taxonomy information
>gi|144225729|emb|CAM84261.1| abscisic insensitive 1B [Populus tremula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2164610 423 ABI2 "AT5G57050" [Arabidopsis 0.647 0.434 0.569 1e-52
TAIR|locus:2005488 434 ABI1 "ABA INSENSITIVE 1" [Arab 0.883 0.578 0.465 5.6e-52
TAIR|locus:2030230 511 HAB1 "AT1G72770" [Arabidopsis 0.605 0.336 0.508 2.2e-42
TAIR|locus:2007943 511 HAB2 "homology to ABI2" [Arabi 0.711 0.395 0.459 1.4e-41
TAIR|locus:2025087 442 HAI2 "highly ABA-induced PP2C 0.781 0.502 0.351 1e-29
TAIR|locus:2043142 362 HAI3 "highly ABA-induced PP2C 0.507 0.397 0.450 1e-29
TAIR|locus:2168449 413 HAI1 "highly ABA-induced PP2C 0.552 0.380 0.423 1.2e-24
TAIR|locus:2080787 399 PP2CA "protein phosphatase 2CA 0.595 0.423 0.357 6.8e-24
TAIR|locus:2165371 416 AHG1 "ABA-hypersensitive germi 0.552 0.377 0.377 1.6e-20
TAIR|locus:2823988179 AT1G17545 [Arabidopsis thalian 0.172 0.273 0.632 8.9e-15
TAIR|locus:2164610 ABI2 "AT5G57050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 111/195 (56%), Positives = 135/195 (69%)

Query:    76 SDESNPMIPEQHEET------KRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQ 129
             SDE +P    Q E+        R++ +   VP +GV S+CG+RPEMED+V+ IP FLQ+ 
Sbjct:    80 SDEFDPRSMNQSEKKVLSRTESRSLFEFKCVPLYGVTSICGRRPEMEDSVSTIPRFLQVS 139

Query:   130 THVLMD-TVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGG 188
             +  L+D  VT+ F   +  HFFGVYDGHGG QVANYC ERMHLAL EE+V  K    DG 
Sbjct:   140 SSSLLDGRVTNGFNPHLSAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGD 199

Query:   189 SWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAV 248
             +WQE+WKKA  NSF++VDSEI         APET GST+VVA++ PT I VANCGDSRAV
Sbjct:   200 TWQEKWKKALFNSFMRVDSEIETVAH----APETVGSTSVVAVVFPTHIFVANCGDSRAV 255

Query:   249 LCRGKVPVPLSVDHK 263
             LCRGK P+ LSVDHK
Sbjct:   256 LCRGKTPLALSVDHK 270
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS;IDA
GO:0008287 "protein serine/threonine phosphatase complex" evidence=IEA;TAS
GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IGI
GO:0006970 "response to osmotic stress" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009414 "response to water deprivation" evidence=RCA;IMP
GO:0009408 "response to heat" evidence=IMP
GO:0010205 "photoinhibition" evidence=IMP
GO:0009409 "response to cold" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
GO:0006469 "negative regulation of protein kinase activity" evidence=IDA
GO:0006470 "protein dephosphorylation" evidence=TAS
TAIR|locus:2005488 ABI1 "ABA INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030230 HAB1 "AT1G72770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007943 HAB2 "homology to ABI2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025087 HAI2 "highly ABA-induced PP2C gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043142 HAI3 "highly ABA-induced PP2C gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168449 HAI1 "highly ABA-induced PP2C gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080787 PP2CA "protein phosphatase 2CA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165371 AHG1 "ABA-hypersensitive germination 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2823988 AT1G17545 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.8__1613__AT5G57050.1
annotation not avaliable (433 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 1e-38
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 6e-38
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 3e-26
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 2e-19
PLN03145 365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 7e-13
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 1e-07
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information 
 Score =  135 bits (343), Expect = 1e-38
 Identities = 60/165 (36%), Positives = 79/165 (47%), Gaps = 31/165 (18%)

Query: 100 VPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGC 159
             R+G++S+ G R  MEDA  + P                         FFGV+DGHGG 
Sbjct: 8   GLRYGLSSMQGVRKPMEDAHVITPDL------------------SDSGGFFGVFDGHGGS 49

Query: 160 QVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVA 219
           + A +  + +   LAEEL+  K  L+D        ++A   +FL  D EI          
Sbjct: 50  EAAKFLSKNLPEILAEELIKEKDELED-------VEEALRKAFLSTDEEILE------EL 96

Query: 220 PETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKV 264
              +GSTAVVA+IS   + VAN GDSRAVLCR    V L+ DHK 
Sbjct: 97  EALSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKP 141

The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity. Length = 252
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
KOG0697 379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
PLN03145 365 Protein phosphatase 2c; Provisional 99.97
KOG0698 330 consensus Serine/threonine protein phosphatase [Si 99.97
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 99.97
PTZ00224 381 protein phosphatase 2C; Provisional 99.96
KOG0699 542 consensus Serine/threonine protein phosphatase [Si 99.94
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 99.93
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.9
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.9
KOG0700 390 consensus Protein phosphatase 2C/pyruvate dehydrog 99.89
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.88
KOG1323 493 consensus Serine/threonine phosphatase [Signal tra 99.81
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.53
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.11
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.09
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 98.76
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 97.6
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 97.35
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-34  Score=255.41  Aligned_cols=173  Identities=32%  Similarity=0.409  Sum_probs=147.0

Q ss_pred             ccceeeeccceeeEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHH
Q 023279           90 TKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERM  169 (284)
Q Consensus        90 ~~~s~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l  169 (284)
                      ++-..-..++-++||..|++|||-+|||+|...-.+..               .-..|.||||||||.|+++|++|+++|
T Consensus        11 eKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~---------------~l~dWSfFAVfDGHAGs~va~~c~~hL   75 (379)
T KOG0697|consen   11 EKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPS---------------PLEDWSFFAVFDGHAGSQVANHCAEHL   75 (379)
T ss_pred             ccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCC---------------CccCceEEEEEcCccchHHHHHHHHHH
Confidence            34555566889999999999999999999988755421               125799999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEE
Q 023279          170 HLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVL  249 (284)
Q Consensus       170 ~~~L~~~l~~~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL  249 (284)
                      .++|...-.+....   +....+.+++-|+..|+++|+.+....... .....+||||+.+++.+.++|++|||||||||
T Consensus        76 lehi~sse~F~~~~---k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~-~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl  151 (379)
T KOG0697|consen   76 LEHIISSEEFRGMT---KNGSVENVEKGIRTGFLSIDEIMRTLSDIS-KGSDRSGSTAVCVFVSPTHIYIINCGDSRAVL  151 (379)
T ss_pred             HHHhhhhHHHhhhc---cCCcHHHHHhhHhhcceeHHHHHhhhhhhh-cccccCCceEEEEEecCceEEEEecCcchhhe
Confidence            99997765554422   345678899999999999999887655432 23346999999999999999999999999999


Q ss_pred             EeCCeeeeCCCCCCCCCCCCCChhHHHHCCceec
Q 023279          250 CRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSL  283 (284)
Q Consensus       250 ~r~g~~~~LT~DH~p~~~~E~~R~RI~~~GG~V~  283 (284)
                      ||+|.++.-|.||||.+|.|++  ||+++||.|+
T Consensus       152 ~rng~~~f~TqDHKP~~p~Eke--RIqnAGGSVM  183 (379)
T KOG0697|consen  152 CRNGEVVFSTQDHKPYLPKEKE--RIQNAGGSVM  183 (379)
T ss_pred             ecCCceEEeccCCCCCChHHHH--HHhcCCCeEE
Confidence            9999999999999999999999  9999999985

>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3nmv_B 324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 8e-58
3nmn_B 319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 4e-57
3kdj_B 316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 7e-57
3jrq_A 326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 9e-56
3rt0_A 340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 1e-42
4ds8_B 343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 1e-42
3nmt_B 341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 1e-42
3ujg_B 350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 2e-42
3qn1_B 337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 2e-42
3kb3_B 321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 4e-40
1a6q_A 382 Crystal Structure Of The Protein SerineTHREONINE PH 6e-16
3fxj_A 390 Crystal Structure Of Human Protein Phosphatase 1a ( 6e-16
2p8e_A 307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 3e-14
2i0o_A 304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 4e-14
4da1_A 389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 1e-11
2iq1_A 274 Crystal Structure Of Human Ppm1k Length = 274 8e-11
2pop_A 353 The Crystal Structure Of Tab1 And Bir1 Complex Leng 7e-04
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure 
Iteration: 1

 Score =  220 bits (560), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 107/175 (61%), Positives = 129/175 (73%), Gaps = 9/175 (5%)
Query: 92  RAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMD-TVTDQFPDQVLVHFF 150
           R++ +   VP +GV S+CG+RPEMED+V+ IP FLQ+ +  L+D  VT+ F   +  HFF
Sbjct: 3   RSLFEFKCVPLYGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFF 62
Query: 151 GVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIG 210
           GVYDGHGG QVANYC ERMHLAL EE+V  K    DG +WQE+WKKA  NSF++VDSEI 
Sbjct: 63  GVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSEI- 121
Query: 211 GALGGEPV--APETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
                E V  APET GST+VVA++ PT I VANCGDSRAVLCRGK P+ LSVDHK
Sbjct: 122 -----ETVAHAPETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHK 171
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 5e-66
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 5e-61
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 7e-53
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 8e-53
2p8e_A 307 PPM1B beta isoform variant 6; structural genomics, 1e-51
2i0o_A 304 Ser/Thr phosphatase; beta sandwich, structural gen 3e-50
2iq1_A 274 Protein phosphatase 2C kappa, PPM1K; structural ge 5e-47
4da1_A 389 Protein phosphatase 1K, mitochondrial; metal-ION-a 1e-46
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 2e-36
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 3e-32
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 1e-31
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 3e-29
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 3e-19
1txo_A237 Putative bacterial enzyme; serine/threonine protei 1e-06
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 8e-06
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 5e-04
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
 Score =  207 bits (529), Expect = 5e-66
 Identities = 103/171 (60%), Positives = 122/171 (71%), Gaps = 9/171 (5%)

Query: 93  AVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGV 152
           ++ +   VP +G  S+CG+RPEMEDAV+ IP FLQ  +  ++D   D        HFFGV
Sbjct: 1   SLFEFKSVPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSA---AHFFGV 57

Query: 153 YDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGA 212
           YDGHGG QVANYC ERMHLALAEE+   K  L DG +W E+WKKA  NSFL+VDSEI   
Sbjct: 58  YDGHGGSQVANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEI--- 114

Query: 213 LGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
              E VAPET GST+VVA++ P+ I VANCGDSRAVLCRGK  +PLSVDHK
Sbjct: 115 ---ESVAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHK 162
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
2i0o_A 304 Ser/Thr phosphatase; beta sandwich, structural gen 99.97
2p8e_A 307 PPM1B beta isoform variant 6; structural genomics, 99.97
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 99.97
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 99.97
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 99.96
2iq1_A 274 Protein phosphatase 2C kappa, PPM1K; structural ge 99.96
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 99.96
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 99.96
4da1_A 389 Protein phosphatase 1K, mitochondrial; metal-ION-a 99.95
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 99.95
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 99.95
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.92
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.92
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.92
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.87
3rnr_A211 Stage II sporulation E family protein; structural 99.8
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.0
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 98.94
3f79_A255 Probable two-component response regulator; adaptor 98.4
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 97.9
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 96.13
3eq2_A394 Probable two-component response regulator; adaptor 81.88
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
Probab=100.00  E-value=1.9e-36  Score=283.09  Aligned_cols=192  Identities=49%  Similarity=0.797  Sum_probs=148.8

Q ss_pred             ccceeeeccceeeEEEEccccCCCCCceeEEEecchhhhhhhhcccccc--CCCCCCCceEEEEEEcCCCCchhHHHHHH
Q 023279           90 TKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVT--DQFPDQVLVHFFGVYDGHGGCQVANYCCE  167 (284)
Q Consensus        90 ~~~s~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~--~~~~~~~~~~lfgVfDGHGG~~~a~~as~  167 (284)
                      ..|++|++++.+.||.++++|+|++|||++++.+++...|..++.++..  ..........||||||||||+.+++||++
T Consensus         3 ~~~~~~~~~~~~~~G~~s~~G~R~~nEDa~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~l~~V~DGhGG~~~~~~as~   82 (337)
T 3qn1_B            3 MGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRD   82 (337)
T ss_dssp             --------CCSCCEEEEEECTTSSSCCEEEEEEEEEEEEEGGGTC----------CEEEEEEEEEEEEESSSHHHHHHHH
T ss_pred             cccchhhhcccCceEEEEeeeCCchhhhHHHHHhhhhcccchhcccccccccccccCCCeEEEEEEeCCCChhHHHHHHH
Confidence            3789999999999999999999999999999999988777666655431  11222346899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcC---CCChHHHHHHHHHHHHHHHHHHHhhhcC----------CCCCCCCCCcceEEEEEEeC
Q 023279          168 RMHLALAEELVTAKARLQD---GGSWQEQWKKAFANSFLKVDSEIGGALG----------GEPVAPETAGSTAVVAIISP  234 (284)
Q Consensus       168 ~l~~~L~~~l~~~~~~~~~---~~~~~~~i~~al~~af~~~d~~i~~~~~----------~~~~~~~~~GsTavv~li~~  234 (284)
                      +++..|.+.+......+..   .......++++|+++|.++|.++.....          ........+|||++++++.+
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~  162 (337)
T 3qn1_B           83 RLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCS  162 (337)
T ss_dssp             HHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHTSSCBCCTTCSSCBCCCSSCTTCEECEEEEEECS
T ss_pred             HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHhhHHHHhhhhccccccccccccccccCCCCceEEEEEEEC
Confidence            9999999988765332111   1123467899999999999999987651          12234458999999999999


Q ss_pred             CeEEEEEeccCcEEEEeCCeeeeCCCCCCCCCCCCCChhHHHHCCceec
Q 023279          235 TLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSL  283 (284)
Q Consensus       235 ~~L~vANvGDSRavL~r~g~~~~LT~DH~p~~~~E~~R~RI~~~GG~V~  283 (284)
                      +++|+|||||||+|++|++++++||+||+|.++.|+.  ||.++||.|.
T Consensus       163 ~~l~~anvGDSR~~l~r~g~~~~lT~DH~~~~~~e~~--ri~~~gg~v~  209 (337)
T 3qn1_B          163 SHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYA--RIENAGGKVI  209 (337)
T ss_dssp             SEEEEEEESSCEEEEEETTEEEESCCCCCTTSHHHHH--HHHHTTCCEE
T ss_pred             CEEEEEeccCcEEEEEeCCEeeeecCCCCCCCHHHHH--HHHHcCCeEE
Confidence            9999999999999999999999999999999999888  9999999874
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1a6qa2 295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 1e-24
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 3e-13
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (243), Expect = 1e-24
 Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 19/162 (11%)

Query: 102 RWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQV 161
           R+G++S+ G R EMEDA   +                          FF VYDGH G QV
Sbjct: 22  RYGLSSMQGWRVEMEDAHTAVIGLPSGLESW---------------SFFAVYDGHAGSQV 66

Query: 162 ANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPE 221
           A YCCE +   +         +   G    E  K      FL++D  +   +  +    +
Sbjct: 67  AKYCCEHLLDHITNNQ---DFKGSAGAPSVENVKNGIRTGFLEIDEHM-RVMSEKKHGAD 122

Query: 222 TAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
            +GSTAV  +ISP      NCGDSR +LCR +     + DHK
Sbjct: 123 RSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHK 164
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1a6qa2 295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 99.93
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-36  Score=271.64  Aligned_cols=170  Identities=31%  Similarity=0.460  Sum_probs=142.7

Q ss_pred             eeeeccceeeEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHH
Q 023279           93 AVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLA  172 (284)
Q Consensus        93 s~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~  172 (284)
                      +....+..+.||+++++|+|++|||++.+..++...               .....||||||||||+.+|+|++++|+..
T Consensus        13 ~~~~~~~~~~~g~~s~~G~R~~~ED~~~~~~~~~~~---------------~~~~~lf~V~DGhGG~~~s~~~~~~l~~~   77 (295)
T d1a6qa2          13 NAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSG---------------LESWSFFAVYDGHAGSQVAKYCCEHLLDH   77 (295)
T ss_dssp             EEEEEETTEEEEEEEEEETSSSCCEEEEEEEEETTT---------------EEEEEEEEEEEEESCSHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEEeCccCCCcccCeeEEEcccCCC---------------CCceEEEEEEeCCCChHHHHHHHHHHHHH
Confidence            334455677999999999999999999998765321               13578999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEEEeC
Q 023279          173 LAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRG  252 (284)
Q Consensus       173 L~~~l~~~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL~r~  252 (284)
                      |.+.+......   .....+.+.++|+++|.++++.+....... .....+|||++++++.++++|||||||||||++++
T Consensus        78 l~~~~~~~~~~---~~~~~~~~~~al~~a~~~~~~~~~~~~~~~-~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~  153 (295)
T d1a6qa2          78 ITNNQDFKGSA---GAPSVENVKNGIRTGFLEIDEHMRVMSEKK-HGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRN  153 (295)
T ss_dssp             HHTSHHHHCSS---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCEECEEEEEECSSEEEEEEESSCEEEEEET
T ss_pred             HHHhhhhcccc---ccchHHHHHHHHHHHHHHHHHHHhhhhhhc-cCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeec
Confidence            98776544322   334567889999999999999886544322 23457999999999999999999999999999999


Q ss_pred             CeeeeCCCCCCCCCCCCCChhHHHHCCceec
Q 023279          253 KVPVPLSVDHKVGTNAPPPPPRLHNLIAQSL  283 (284)
Q Consensus       253 g~~~~LT~DH~p~~~~E~~R~RI~~~GG~V~  283 (284)
                      +.+++||.||+|.++.|++  ||+++||.|.
T Consensus       154 ~~~~~lT~dH~~~~~~E~~--Ri~~~gg~v~  182 (295)
T d1a6qa2         154 RKVHFFTQDHKPSNPLEKE--RIQNAGGSVM  182 (295)
T ss_dssp             TEEEEECCCCCTTSHHHHH--HHHHTTCCEE
T ss_pred             ccceeeccccCcccHHHHh--hHhhcCCccc
Confidence            9999999999999999998  9999999874
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure