Citrus Sinensis ID: 023333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEcccccEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccccccEEEEEEcccccEEEEcEEEEEccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccEEccccccccHHHcccccccEEEEEEcccccHcccccHHHHHHHHHHHHHHcccccccEEEEEEEEEcccHHHHccccccccccccccccccEEEcccccHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccc
Coil and Loop (DISEMBL)
mgsslllvsgstedpkclfppepehyggpklKVAIIGAGLAGMSTAVELLDqghevdiyesrsfiggkvgsfidkhgnhieMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFllrtpdagfscfadlaltspedyygegqgsllqcvltpgnpymplpndEIIRRVARQvgtlfplpqgleVIWSSFVKIAQSLyrggpgkvplrtdqktpvknlflagsytkqdyidsmegptlsdrQASAYICNAGEELVALRKQLAAFEsqeqmeaptttndelslv
Flexible Loop (DISEMBL)
mgsslllvsgstedpkclfppepehyggPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRggpgkvplrtdqktpvkNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAfesqeqmeaptttndelslv
Low Complexity Region (SEG)
MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Disordered region (IsUnstruct)
*************************YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYID***********ASAYICNAGEELVALRKQL**********************
Disordered Region (DISOPRED)
*********************************AIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYIC********************************SLV
Disordered Region (DISEMBL)
MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFES*****************
Disordered Region (DISPRO)
*****************LFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQL**********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9FV46	587	Zeta-carotene desaturase,	N/A	no	0.607	0.293	0.754	1e-69
Q9SMJ3	588	Zeta-carotene desaturase,	N/A	no	0.621	0.299	0.737	1e-68
O49901	574	Zeta-carotene desaturase,	N/A	no	0.625	0.308	0.715	4e-68
Q9SE20	588	Zeta-carotene desaturase,	N/A	no	0.621	0.299	0.715	4e-67
Q38893	558	Zeta-carotene desaturase,	yes	no	0.611	0.310	0.672	1e-63
Q9ZTP4	570	Zeta-carotene desaturase,	N/A	no	0.547	0.271	0.719	3e-59
Q31N27	481	Probable zeta-carotene de	yes	no	0.505	0.297	0.593	3e-44
P74306	489	Zeta-carotene desaturase	N/A	no	0.547	0.316	0.567	9e-42
Q9R6X4	479	Zeta-carotene desaturase	yes	no	0.505	0.298	0.586	2e-41
P28553	570	Phytoene dehydrogenase, c	no	no	0.533	0.264	0.320	3e-14

>sp|Q9FV46|ZDS_TARER Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 135/179 (75%), Positives = 145/179 (81%), Gaps = 7/179 (3%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLRQA G   LL TPDA FSCFADLAL SPEDYY EGQGSLLQCVLTPG+PYMPLPN+E
Sbjct: 414 RQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEE 473

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           II RV++QV  LFP  QGLEV WSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 474 IISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 533

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASA+IC+AGEEL ALRKQLAA +S + +       DE+SLV
Sbjct: 534 TKQDYIDSMEGATLSGRQASAFICDAGEELAALRKQLAAIQSIDSIGV-----DEMSLV 587

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
Tagetes erecta (taxid: 13708)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 6

>sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 147/179 (82%), Gaps = 3/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQ ++A G   LL TPDA FSCFADLAL SPEDYY EGQGSLLQCVLTPG+PYMPLPN+E
Sbjct: 411 RQSKRATGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEE 470

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           IIRRV++QV  LFP  QGLEV WSS VKI QSLYR GPGK P R DQKTPV+N FLAGSY
Sbjct: 471 IIRRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSY 530

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYIC+AGE+L+ALRK++AA E  E +    + +DELSLV
Sbjct: 531 TKQDYIDSMEGATLSGRQASAYICDAGEQLLALRKKIAAAELNE-ISKGVSLSDELSLV 588

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. No activity with all-trans-zeta-carotene. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene).

Capsicum annuum (taxid: 4072)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1

 Score =  258 bits (659), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/179 (71%), Positives = 145/179 (81%), Gaps = 2/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR A+G   LL TPDA FSCF+DLAL+SPEDYY EGQGSL+Q VLTPG+PYMPLPND 
Sbjct: 396 RQLRAAVGLDNLLYTPDADFSCFSDLALSSPEDYYIEGQGSLIQAVLTPGDPYMPLPNDA 455

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           II RV +QV  LFP  QGLEV+WSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 456 IIERVRKQVLDLFPSSQGLEVLWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 515

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQA+AYIC+AGE+L ALRK++AA   ++ +   +  +DELSLV
Sbjct: 516 TKQDYIDSMEGATLSGRQAAAYICSAGEDLAALRKKIAADHPEQLINKDSNVSDELSLV 574

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Narcissus pseudonarcissus (taxid: 39639)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9SE20|ZDS_SOLLC Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1

 Score =  254 bits (649), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 128/179 (71%), Positives = 144/179 (80%), Gaps = 3/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQL++A G   LL TPDA FSCFADLAL SP+DYY EGQGSLLQCVLTPG+PYMPL NDE
Sbjct: 411 RQLKRAAGLDNLLYTPDADFSCFADLALASPDDYYIEGQGSLLQCVLTPGDPYMPLSNDE 470

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           II+RV +QV  LFP  QGLEV WSS +KI QSLYR GPGK P R DQKTPV+N FLAGSY
Sbjct: 471 IIKRVTKQVLALFPSSQGLEVTWSSVLKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSY 530

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYICN GE+L+ALRK++ A E  + +    + +DELSLV
Sbjct: 531 TKQDYIDSMEGATLSGRQASAYICNVGEQLMALRKKITAAELND-ISKGVSLSDELSLV 588

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q38893|ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=1 SV=3

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/183 (67%), Positives = 142/183 (77%), Gaps = 10/183 (5%)

Query: 103 MDVYRQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPL 160
           +++ RQL++A+G   LL TPDA FSCFADLAL SP DYY EGQG+LLQCVLTPG+PYM +
Sbjct: 384 IELARQLKRAVGLDNLLYTPDADFSCFADLALASPADYYIEGQGTLLQCVLTPGDPYMRM 443

Query: 161 PNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFL 220
           PND+II +VA QV  LFP  +GLEV WSS VKIAQSLYR  PGK P R DQKTP+KN FL
Sbjct: 444 PNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNFFL 503

Query: 221 AGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDEL 280
           AGSYTKQDYIDSMEG TLS RQAS+YIC+AGEEL  L K+L++        + T   DEL
Sbjct: 504 AGSYTKQDYIDSMEGATLSGRQASSYICDAGEELAELNKKLSS--------SATAVPDEL 555

Query: 281 SLV 283
           SLV
Sbjct: 556 SLV 558

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9ZTP4|ZDS_MAIZE Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1

 Score =  228 bits (582), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/157 (71%), Positives = 128/157 (81%), Gaps = 2/157 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQL++A+G   LL T DA FSCF+DLAL+SP DYY EGQGSL+Q VLTPG+PYMPLPN+E
Sbjct: 396 RQLQRAVGLDNLLYTADADFSCFSDLALSSPADYYIEGQGSLIQAVLTPGDPYMPLPNEE 455

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           II +V +QV  LFP  +GLEV WSS VKI QSLYR  PG  P R DQKTPVKN FL+GSY
Sbjct: 456 IISKVQKQVVELFPSSRGLEVTWSSVVKIGQSLYREAPGNDPFRPDQKTPVKNFFLSGSY 515

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQL 261
           TKQDYIDSMEG TLS R+ SAYIC AGEEL+ALRK+L
Sbjct: 516 TKQDYIDSMEGATLSGRRTSAYICGAGEELLALRKKL 552

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=zds PE=3 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 107/145 (73%), Gaps = 2/145 (1%)

Query: 108 QLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEI 165
           QL  A G   LL T DA FSCF DLAL+SP+DYY +GQGSLLQCVLTPG+P++ + N++I
Sbjct: 332 QLDHATGLDNLLYTADADFSCFTDLALSSPKDYYRKGQGSLLQCVLTPGDPFIAMKNEDI 391

Query: 166 IRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYT 225
            + V +QV  LFP  + L + WS+ VK+AQSLYR  PG  P R DQKTP+ N FLAGSYT
Sbjct: 392 AQHVLKQVHELFPSSRDLNMTWSNVVKLAQSLYREAPGMDPFRPDQKTPIANFFLAGSYT 451

Query: 226 KQDYIDSMEGPTLSDRQASAYICNA 250
           +QDYIDSMEG T+S R+A+  +  A
Sbjct: 452 QQDYIDSMEGATISGRRAAKAMLEA 476

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=crtQ PE=3 SV=1

 Score =  170 bits (431), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 106/164 (64%), Gaps = 9/164 (5%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           +QL QA G   LL T DA FSCFADLALTSP DYY  G+GSLLQ VLTPG+P+M   N+ 
Sbjct: 332 KQLEQAFGLDNLLYTSDAEFSCFADLALTSPADYYRPGEGSLLQLVLTPGDPFMKESNEA 391

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           I  RV +QV  LFP    L + W S +K+AQSLYR  PG    R  Q TP+ N FLAGSY
Sbjct: 392 IAYRVLKQVKALFPSAADLNMTWYSVIKLAQSLYREAPGMDLFRPSQATPIANFFLAGSY 451

Query: 225 TKQDYIDSMEGPTLSDRQAS-AYICNAGEELVALRKQLAAFESQ 267
           T+QDYIDSMEG TLS RQA+ A + N        R Q A   SQ
Sbjct: 452 TQQDYIDSMEGATLSGRQAAQAILANQA------RLQTAVLASQ 489

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9R6X4|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=crtQ PE=3 SV=2

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 105/145 (72%), Gaps = 2/145 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           +QL++A G   LL T DA FSCFADLALTSP DYY +GQGSLLQ VLTPG+P++   N+ 
Sbjct: 331 KQLKEAAGLDNLLYTADADFSCFADLALTSPSDYYRQGQGSLLQLVLTPGDPFIKESNEA 390

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           I + V +QV  LFP  + L + W S VK+AQSLYR  PG    R +QKTP+ N FLAGSY
Sbjct: 391 IAQHVLKQVYELFPSSRELNMTWYSVVKLAQSLYREAPGMDVYRPNQKTPIANFFLAGSY 450

Query: 225 TKQDYIDSMEGPTLSDRQASAYICN 249
           T+QDYIDSMEG T+S R+A+  I +
Sbjct: 451 TQQDYIDSMEGATVSGRRAAKVILD 475

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 107 RQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEII 166
           R+L+     LL +     S +AD+++T  E YY   Q S+L+ V  P   ++   +D+II
Sbjct: 406 RKLKNTYDHLLFSRSPLLSVYADMSVTCKE-YYSPNQ-SMLELVFAPAEEWISRSDDDII 463

Query: 167 RRVARQVGTLFPLP-----QGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLA 221
           +    ++  LFP          +++    VK  +S+Y+  P   P R  Q++P++  +LA
Sbjct: 464 QATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLA 523

Query: 222 GSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQ 260
           G YTKQ Y+ SMEG  LS +  +  I     EL+A R Q
Sbjct: 524 GDYTKQKYLASMEGAVLSGKLCAQAIVQ-DSELLATRGQ 561

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
18073986	570	zeta-carotene desaturase [Citrus sinensi	0.625	0.310	0.877	5e-83
83637848	570	zeta-carotene desaturase [Citrus unshiu]	0.625	0.310	0.877	6e-83
15824043	570	zeta-carotene desaturase [Citrus unshiu]	0.625	0.310	0.877	7e-83
13991921	570	zeta-carotene desaturase precursor [Citr	0.625	0.310	0.877	8e-83
190576747	570	zeta carotene desaturase [Citrus maxima]	0.625	0.310	0.871	3e-82
197318637	299	zeta carotene desaturase [Citrus maxima]	0.625	0.591	0.860	3e-80
224130698	530	predicted protein [Populus trichocarpa]	0.621	0.332	0.787	1e-70
254935143	586	zeta carotene desaturase [Jatropha curca	0.621	0.300	0.770	6e-70
33313470	568	zeta-carotene desaturase ZDS1 [Malus x d	0.621	0.309	0.782	7e-70
33313474	571	zeta-carotene desaturase ZDS2 [Malus x d	0.621	0.308	0.782	8e-70

>gi|18073986|emb|CAC85667.1| zeta-carotene desaturase [Citrus sinensis]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 160/179 (89%), Gaps = 2/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           IIRRVA+QV  LFP  QGLEVIWSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83637848|gb|ABC33728.1| zeta-carotene desaturase [Citrus unshiu]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 160/179 (89%), Gaps = 2/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           IIRRVA+QV  LFP  QGLEVIWSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15824043|dbj|BAB68552.1| zeta-carotene desaturase [Citrus unshiu]

 Score =  313 bits (801), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 160/179 (89%), Gaps = 2/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           IIRRVA+QV  LFP  QGLEVIWSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13991921|gb|AAK51557.1|AF372617_1 zeta-carotene desaturase precursor [Citrus x paradisi]

 Score =  312 bits (800), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 160/179 (89%), Gaps = 2/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           IIRRVA+QV  LFP  QGLEVIWSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190576747|gb|ACE79169.1| zeta carotene desaturase [Citrus maxima]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 159/179 (88%), Gaps = 2/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           IIRRVA+QV  LFP  QGL VIWSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLAVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197318637|gb|ACH67607.1| zeta carotene desaturase [Citrus maxima]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/179 (86%), Positives = 157/179 (87%), Gaps = 2/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQ R+ALGF  LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPL NDE
Sbjct: 121 RQSRRALGFDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLQNDE 180

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           IIRRVA+QV  LFP  QGLEVIWSS VKI QSLYR  PGK P R DQKTPVKN FLAGSY
Sbjct: 181 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYRERPGKDPFRPDQKTPVKNFFLAGSY 240

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTT DELSLV
Sbjct: 241 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTTDELSLV 299

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130698|ref|XP_002328354.1| predicted protein [Populus trichocarpa] gi|222838069|gb|EEE76434.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/179 (78%), Positives = 149/179 (83%), Gaps = 3/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLRQA G   LL TPDA FSCFADLAL SPEDYY EGQGSLLQCVLTPG+PYM L ND+
Sbjct: 353 RQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMSLTNDK 412

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           II RV++QV  LFP  QGLEVIWSS VKIAQSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 413 IIERVSKQVLALFPSSQGLEVIWSSVVKIAQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 472

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYIC+AGEELVALRK+LAA ESQ+   + T T DELSLV
Sbjct: 473 TKQDYIDSMEGATLSGRQASAYICDAGEELVALRKKLAAVESQDCANSNTVT-DELSLV 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254935143|gb|ACT87979.1| zeta carotene desaturase [Jatropha curcas]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 138/179 (77%), Positives = 149/179 (83%), Gaps = 3/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLRQALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPL NDE
Sbjct: 409 RQLRQALGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLSNDE 468

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           II RV++QV  LFP  QGLEVIWSS VKI QS+YR GPG+ P R DQKTPVKN FL+GSY
Sbjct: 469 IINRVSKQVLALFPSSQGLEVIWSSVVKIGQSIYREGPGRDPFRPDQKTPVKNFFLSGSY 528

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYIC+AGE+LVALRK+LAA ES E +   +   DELSLV
Sbjct: 529 TKQDYIDSMEGATLSGRQASAYICDAGEDLVALRKKLAAIESPE-IGPSSPVTDELSLV 586

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33313470|gb|AAQ04224.1| zeta-carotene desaturase ZDS1 [Malus x domestica]

 Score =  270 bits (689), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 148/179 (82%), Gaps = 3/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQL+QA G   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPN+E
Sbjct: 391 RQLKQASGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLPNEE 450

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           II RV +QV  LFP  QGLEV WSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 451 IIARVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 510

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYIC+AGEELV LRK+LAA +S E  +A  TT DELSLV
Sbjct: 511 TKQDYIDSMEGATLSGRQASAYICDAGEELVGLRKKLAAQDSGEYTKAVNTT-DELSLV 568

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33313474|gb|AAQ04225.1| zeta-carotene desaturase ZDS2 [Malus x domestica]

 Score =  269 bits (688), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 148/179 (82%), Gaps = 3/179 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQL+QA G   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPN+E
Sbjct: 394 RQLKQASGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLPNEE 453

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           II RV +QV  LFP  QGLEV WSS VKI QSLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 454 IIARVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 513

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 283
           TKQDYIDSMEG TLS RQASAYIC+AGEELV LRK+LAA +S E  +A  TT DELSLV
Sbjct: 514 TKQDYIDSMEGATLSGRQASAYICDAGEELVGLRKKLAAQDSGEYTKAVNTT-DELSLV 571

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2114789	558	ZDS "zeta-carotene desaturase"	0.611	0.310	0.672	8.6e-100
TAIR|locus:2129515	566	PDS3 "phytoene desaturase 3" [	0.522	0.261	0.322	1.4e-25
UNIPROTKB|Q8EGM9	1041	SO_1571 "Bifunctional DNA-bind	0.310	0.084	0.410	4.2e-06
TIGR_CMR|SO_1571	1041	SO_1571 "hypothetical protein"	0.310	0.084	0.410	4.2e-06
WB|WBGene00011615	737	lsd-1 [Caenorhabditis elegans	0.229	0.088	0.424	0.00029
WB|WBGene00016061	527	hpo-15 [Caenorhabditis elegans	0.247	0.132	0.361	0.00046
UNIPROTKB|P21397	527	MAOA "Amine oxidase [flavin-co	0.303	0.163	0.267	0.00064
UNIPROTKB|P56560	520	MAOB "Amine oxidase [flavin-co	0.275	0.15	0.269	0.00068
RGD|3041	520	Maob "monoamine oxidase B" [Ra	0.275	0.15	0.282	0.00083
UNIPROTKB|P21398	527	MAOA "Amine oxidase [flavin-co	0.275	0.148	0.292	0.0009

TAIR|locus:2114789 ZDS "zeta-carotene desaturase" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
 Identities = 123/183 (67%), Positives = 142/183 (77%)

Query:   103 MDVYRQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPL 160
             +++ RQL++A+G   LL TPDA FSCFADLAL SP DYY EGQG+LLQCVLTPG+PYM +
Sbjct:   384 IELARQLKRAVGLDNLLYTPDADFSCFADLALASPADYYIEGQGTLLQCVLTPGDPYMRM 443

Query:   161 PNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFL 220
             PND+II +VA QV  LFP  +GLEV WSS VKIAQSLYR  PGK P R DQKTP+KN FL
Sbjct:   444 PNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNFFL 503

Query:   221 AGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDEL 280
             AGSYTKQDYIDSMEG TLS RQAS+YIC+AGEEL  L K+L++        + T   DEL
Sbjct:   504 AGSYTKQDYIDSMEGATLSGRQASSYICDAGEELAELNKKLSS--------SATAVPDEL 555

Query:   281 SLV 283
             SLV
Sbjct:   556 SLV 558

GO:0005739 "mitochondrion" evidence=ISM

GO:0016117 "carotenoid biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016719 "carotene 7,8-desaturase activity" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016120 "carotene biosynthetic process" evidence=IDA

TAIR|locus:2129515 PDS3 "phytoene desaturase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
 Identities = 50/155 (32%), Positives = 79/155 (50%)

Query:   107 RQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEII 166
             R+L+     LL +     S +AD++LT  E YY   + S+L+ V  P   ++   + +II
Sbjct:   400 RKLKNTYDHLLFSRSNLLSVYADMSLTCKE-YYDPNR-SMLELVFAPAEEWISRTDSDII 457

Query:   167 RRVARQVGTLFP----LPQG-LEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLA 221
                 +++  LFP      Q   +++    VK  +S+Y+  P   P R  Q++P++  +LA
Sbjct:   458 DATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLA 517

Query:   222 GSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA 256
             G YTKQ Y+ SMEG  LS +  S  I    E L A
Sbjct:   518 GDYTKQKYLASMEGAVLSGKFCSQSIVQDYELLAA 552

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009536 "plastid" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

UNIPROTKB|Q8EGM9 SO_1571 "Bifunctional DNA-binding protein / oxidoreductase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 138 (53.6 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 39/95 (41%), Positives = 54/95 (56%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQ-G----HEVDIYESRSFIGGKVGSFIDKH-GNHIEM- 82
             K K+AI+G G+A M+ A  L D+ G    +E+DIY+    IGGK  S  +   G  IE  
Sbjct:   322 KQKIAILGGGVAAMTAACYLTDKPGWQNQYEIDIYQLGWRIGGKGASGRNAAMGQRIEEH 381

Query:    83 GLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLL 117
             GLHI+FG Y N F LM+K + ++ R  +  L   L
Sbjct:   382 GLHIWFGFYQNAFALMRKAYEELDRPAQAPLATFL 416

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1571 SO_1571 "hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 138 (53.6 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 39/95 (41%), Positives = 54/95 (56%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQ-G----HEVDIYESRSFIGGKVGSFIDKH-GNHIEM- 82
             K K+AI+G G+A M+ A  L D+ G    +E+DIY+    IGGK  S  +   G  IE  
Sbjct:   322 KQKIAILGGGVAAMTAACYLTDKPGWQNQYEIDIYQLGWRIGGKGASGRNAAMGQRIEEH 381

Query:    83 GLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLL 117
             GLHI+FG Y N F LM+K + ++ R  +  L   L
Sbjct:   382 GLHIWFGFYQNAFALMRKAYEELDRPAQAPLATFL 416

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00011615 lsd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
 Identities = 28/66 (42%), Positives = 38/66 (57%)

Query:    19 FPPEPEHYGGPKLK-VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHG 77
             F P+ E     + K V +IGAG AG++ A +LL  G +V + E+    GG+V S I KHG
Sbjct:   162 FFPKTELVNNMEKKFVVVIGAGAAGIAAATQLLTFGFDVAVVEASGLTGGRVRSLISKHG 221

Query:    78 NHIEMG 83
               IE G
Sbjct:   222 ELIETG 227

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034720 "histone H3-K4 demethylation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

WB|WBGene00016061 hpo-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 0.00046, Sum P(2) = 0.00046
 Identities = 26/72 (36%), Positives = 43/72 (59%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
             K  +AI+GAG++G+STA  L++ G  + DIYE    IGG++ +   K G  ++MG     
Sbjct:    31 KPSIAIVGAGISGLSTARRLIELGIDDFDIYEGLDRIGGRIHAIPYKDG-FLQMGAQFIN 89

Query:    89 GCYNNLFRLMKK 100
             G  N L+++  +
Sbjct:    90 GAQNPLYKIANR 101

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P21397 MAOA "Amine oxidase [flavin-containing] A" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 0.00064, Sum P(2) = 0.00064
 Identities = 23/86 (26%), Positives = 45/86 (52%)

Query:    22 EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE 81
             E     G    V +IG G++G+S A  L + G  V + E+R  +GG+  +  ++H ++++
Sbjct:     5 EKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVD 64

Query:    82 MGLHIFFGCYNNLFRLMKKFFMDVYR 107
             +G        N + RL K+  ++ Y+
Sbjct:    65 VGGAYVGPTQNRILRLSKELGIETYK 90

GO:0016021 "integral to membrane" evidence=IEA

GO:0042135 "neurotransmitter catabolic process" evidence=IEA

GO:0042420 "dopamine catabolic process" evidence=IEA

GO:0007610 "behavior" evidence=TAS

GO:0006576 "cellular biogenic amine metabolic process" evidence=TAS

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0008131 "primary amine oxidase activity" evidence=TAS

GO:0042136 "neurotransmitter biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|P56560 MAOB "Amine oxidase [flavin-containing] B" [Bos taurus (taxid:9913)]

 Score = 104 (41.7 bits), Expect = 0.00068, Sum P(3) = 0.00068
 Identities = 21/78 (26%), Positives = 43/78 (55%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
             K  V ++G G++GM+ A  L D G  V + E+R  +GG+  +  ++   ++++G      
Sbjct:     4 KCDVVVVGGGISGMAAAKLLHDSGLNVIVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP 63

Query:    90 CYNNLFRLMKKFFMDVYR 107
               N++ RL K+  ++ Y+
Sbjct:    64 TQNHILRLSKELGLETYK 81

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|3041 Maob "monoamine oxidase B" [Rattus norvegicus (taxid:10116)]

 Score = 105 (42.0 bits), Expect = 0.00083, Sum P(2) = 0.00083
 Identities = 22/78 (28%), Positives = 43/78 (55%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
             K  V ++G G++GM+ A  L D G  V + E+R  +GG+  +  +K+  ++++G      
Sbjct:     4 KCDVIVVGGGISGMAAAKLLHDCGLSVVVLEARDRVGGRTYTIRNKNVKYVDLGGSYVGP 63

Query:    90 CYNNLFRLMKKFFMDVYR 107
               N + RL K+  ++ Y+
Sbjct:    64 TQNRILRLAKELGLETYK 81

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0008131 "primary amine oxidase activity" evidence=IDA;TAS

GO:0009636 "response to toxic substance" evidence=IEP

GO:0010044 "response to aluminum ion" evidence=IEP

GO:0010269 "response to selenium ion" evidence=IEP

GO:0014063 "negative regulation of serotonin secretion" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEP

GO:0042135 "neurotransmitter catabolic process" evidence=IDA;TAS

GO:0042493 "response to drug" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045471 "response to ethanol" evidence=IEP

GO:0045964 "positive regulation of dopamine metabolic process" evidence=IMP

GO:0048545 "response to steroid hormone stimulus" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051412 "response to corticosterone stimulus" evidence=IEP

UNIPROTKB|P21398 MAOA "Amine oxidase [flavin-containing] A" [Bos taurus (taxid:9913)]

 Score = 103 (41.3 bits), Expect = 0.00090, Sum P(2) = 0.00090
 Identities = 24/82 (29%), Positives = 48/82 (58%)

Query:    28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIY--ESRSFIGGKVGSFIDKHGNHIEMGLH 85
             G    V +IG G++G+S A +LL + HEV++   E+R  +GG+  +  ++H +++++G  
Sbjct:    11 GQMFDVVVIGGGISGLSAA-KLLAE-HEVNVLVLEARERVGGRTYTVRNEHVDYVDVGGA 68

Query:    86 IFFGCYNNLFRLMKKFFMDVYR 107
                   N + RL K+  ++ Y+
Sbjct:    69 YVGPTQNRILRLSKQLGLETYK 90

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0042420 "dopamine catabolic process" evidence=IEA

GO:0042135 "neurotransmitter catabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	0.766
3rd Layer	1.14.99.30	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	1e-88
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	3e-74
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	2e-59
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	1e-41
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	6e-29
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	8e-29
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	3e-20
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	1e-16
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	3e-16
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	4e-16
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	5e-16
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	6e-16
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	6e-14
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	4e-10
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	5e-10
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	9e-09
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	2e-08
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	6e-08
COG2907	447	COG2907, COG2907, Predicted NAD/FAD-binding protei	1e-07
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	1e-06
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	1e-06
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	1e-06
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	2e-06
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	7e-06
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	8e-06
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	9e-06
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	1e-05
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	1e-05
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	1e-05
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	2e-05
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-05
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	2e-05
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	3e-05
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	4e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	6e-05
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	7e-05
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	8e-05
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	1e-04
PLN02976	1713	PLN02976, PLN02976, amine oxidase	1e-04
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	1e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-04
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	2e-04
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	3e-04
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	4e-04
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	6e-04
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	6e-04
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	7e-04
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	7e-04
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	8e-04
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	8e-04
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	0.001
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	0.001
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	0.002
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.002
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	0.002
PLN03000	881	PLN03000, PLN03000, amine oxidase	0.002
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	0.002
PRK12409	410	PRK12409, PRK12409, D-amino acid dehydrogenase sma	0.002
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	0.003
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	0.004
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	0.004
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	0.004
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	0.004
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	0.004

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score =  273 bits (701), Expect = 1e-88
 Identities = 116/162 (71%), Positives = 129/162 (79%), Gaps = 2/162 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+A G   LL + DA FSCFADLALTSPEDYY EG+GSL+Q VLTPG+PYMPL ND+
Sbjct: 407 RQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDK 466

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           I+ +V +QV  LFP  +GLEV WSS VKI QSLYR  PG  P R DQKTP+ N FLAGSY
Sbjct: 467 IVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSY 526

Query: 225 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFES 266
           TKQDYIDSMEG TLS RQA+AYIC AGEEL  LRK+LAA ES
Sbjct: 527 TKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRKKLAAEES 568

Length = 569

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score =  234 bits (598), Expect = 3e-74
 Identities = 97/144 (67%), Positives = 113/144 (78%), Gaps = 2/144 (1%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           +QL++A G   LL T DA FSCFADLALTSP+DYY EGQGSLLQCVLTPG+P+MP  N+E
Sbjct: 331 KQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEE 390

Query: 165 IIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224
           I +RV +QV  LFP  + L++ WSS VK+AQSLYR  PG  P R DQKTP+ N FLAGSY
Sbjct: 391 IAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSY 450

Query: 225 TKQDYIDSMEGPTLSDRQASAYIC 248
           T+QDYIDSMEG TLS RQA+A I 
Sbjct: 451 TQQDYIDSMEGATLSGRQAAAAIL 474

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score =  198 bits (504), Expect = 2e-59
 Identities = 79/86 (91%), Positives = 82/86 (95%)

Query: 15  PKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID 74
           PK LFPPEPE Y GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF+D
Sbjct: 60  PKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVD 119

Query: 75  KHGNHIEMGLHIFFGCYNNLFRLMKK 100
           K+GNHIEMGLH+FFGCYNNLFRLMKK
Sbjct: 120 KNGNHIEMGLHVFFGCYNNLFRLMKK 145

Length = 569

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score =  148 bits (376), Expect = 1e-41
 Identities = 59/69 (85%), Positives = 65/69 (94%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           KVAI+GAGLAG+STAVEL+D GHEVDIYESRSFIGGKVGS++D  GNHIEMGLH+FFGCY
Sbjct: 1   KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCY 60

Query: 92  NNLFRLMKK 100
            NLFRLMKK
Sbjct: 61  ANLFRLMKK 69

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score =  114 bits (287), Expect = 6e-29
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           +VAI GAGLAG++ A EL D G++V +YE+R  +GGKV S+ D  GNH+E GLH+FFGCY
Sbjct: 2   RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCY 61

Query: 92  NNLFRLMKKFFMDVYRQLRQALGFLLRTPDAG 123
            NL  L+K+  ++   QLR+     + +    
Sbjct: 62  YNLLTLLKELPIEDRLQLREHTKTFVGSGTRP 93

Length = 485

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score =  114 bits (286), Expect = 8e-29
 Identities = 56/135 (41%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 116 LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGT 175
           LL + D      ADLALTSP DY   G G  L+ VL PG P++   ++ I+    +++  
Sbjct: 330 LLWSDDTLGGVVADLALTSP-DYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYE 388

Query: 176 LFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEG 235
           L P       + SS +   QSLY   PG    R +QKTP+ NL LAG YTKQ Y+ SMEG
Sbjct: 389 LVP-SLAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEG 447

Query: 236 PTLSDRQASAYICNA 250
            TLS   A+  I + 
Sbjct: 448 ATLSGLLAANAILDN 462

Length = 485

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 89.5 bits (222), Expect = 3e-20
 Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 6/128 (4%)

Query: 125 SCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLE 184
           S +AD++ T  E  Y +   S+L+ V  P   ++   ++EII     ++  LFP     +
Sbjct: 328 SVYADMSETCKE--YADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKAD 385

Query: 185 ----VIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSD 240
               ++    VK  +S+Y+  PG+   R  QKTP+ N FLAG YTKQ Y+ SMEG  LS 
Sbjct: 386 SPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSG 445

Query: 241 RQASAYIC 248
           +  +  I 
Sbjct: 446 KLCAQAIV 453

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 72.1 bits (178), Expect = 1e-16
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 35  IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNL 94
           I+GAGL+G+  A  L  +G +V + E R  IGG   S  D  G   + G HIF   Y N+
Sbjct: 1   IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERD-PGYRHDYGAHIFHTSYPNV 59

Query: 95  FRLMKKF 101
             L+ + 
Sbjct: 60  RELLDEL 66

Length = 66

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 78.3 bits (193), Expect = 3e-16
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 7/156 (4%)

Query: 107 RQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEII 166
           R+L+     LL +     S +AD++ T  E YY   + S+L+ V  P   ++   +++II
Sbjct: 401 RKLKNTYDHLLFSRSPLLSVYADMSTTCKE-YYDPNK-SMLELVFAPAEEWISRSDEDII 458

Query: 167 RRVARQVGTLFP----LPQGL-EVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLA 221
               +++  LFP      Q   +++    VK  +S+Y+  P   P R  Q++P++  +LA
Sbjct: 459 DATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLA 518

Query: 222 GSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL 257
           G YTKQ Y+ SMEG  LS +  +  I    E L A 
Sbjct: 519 GDYTKQKYLASMEGAVLSGKLCAQSIVQDYELLAAR 554

Length = 567

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 77.6 bits (191), Expect = 4e-16
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 40  LAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMK 99
           LAG++ A ELL  G +V + E+R  +GG++ +     G  IE+G   F G Y NL  L+ 
Sbjct: 1   LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFD-GFLIELGAQWFHGAYPNLLNLLL 59

Query: 100 KFFMDVYRQL 109
           +  +++   L
Sbjct: 60  ELGLELGLLL 69

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 77.6 bits (191), Expect = 5e-16
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           LKV I GAGLAG+STA  L D GH+  + E+R  +GGKV ++ D+ G+  E GLHIFFG 
Sbjct: 94  LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA 153

Query: 91  YNNLFRLMKK 100
           Y N+  L  +
Sbjct: 154 YPNVQNLFGE 163

Length = 567

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 76.8 bits (189), Expect = 6e-16
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           +VAI GAGLAG+S A  L D GH   + E+R  +GGKV ++ D+ G+  E GLHIFFG Y
Sbjct: 1   RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAY 60

Query: 92  NNLFRLMKK 100
            N+ +L+K+
Sbjct: 61  PNMLQLLKE 69

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 70.9 bits (174), Expect = 6e-14
 Identities = 31/106 (29%), Positives = 53/106 (50%)

Query: 142 GQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGG 201
           G+   L  V++     + LP +E+  R+  ++   FP   G + +W+  +K  ++ +   
Sbjct: 304 GEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAAT 363

Query: 202 PGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYI 247
           PG   LR   +TP  NLFLAG +T   +  +MEG   S  QA+  +
Sbjct: 364 PGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGVQAAEAV 409

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 114 GFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMP-LPNDEIIRRVARQ 172
           G L+       S    +  TSP    G G+G LL  VL      +  L ++E++  V R 
Sbjct: 306 GLLVTDGL---SRGGYVLDTSPSS--GSGRGVLLSYVLGDAARELEDLSDEELLEAVLRD 360

Query: 173 VGTLFPL-----PQGLEVIWSSFVKIAQSLY----RGGPGKVPLRTDQKTPV-KNLFLAG 222
           +  L        P    V        A+  Y     G   +   R   +TPV   LF AG
Sbjct: 361 LRKLLGPEDVPDPVNFLVSDWHTDPYARGSYSYPPVGDDSR--YRPALRTPVGPGLFFAG 418

Query: 223 SYTKQDYIDSMEGPTLSDRQASAYI 247
            +T   Y  ++EG   S  +A+  +
Sbjct: 419 EHTSGGYPGTVEGAVESGLRAARRV 443

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 6/55 (10%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF------IDKHGNHI 80
          K+AI+G G+AG++ A  L  +GHEV ++E+   +GG   SF      I++  +HI
Sbjct: 1  KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHI 55

Length = 434

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 29  PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           P   V +IGAGL G++ A  L   G +V + E    +GG+  +F +  G   + G   + 
Sbjct: 2   PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF-ELDGFRFDTGPSWYL 60

Query: 89  GC-YNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCF 127
                 LFR +             A G  L  PD  +  F
Sbjct: 61  MPDPGPLFRELGNL---------DADGLDLLPPDPAYRVF 91

Length = 487

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 13  EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           E    LF   P+       KVA+IGAG AG++ A  L  +G++V I+E+R   GG
Sbjct: 127 ETGWVLFKRAPK----TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           K  V IIGAG AG++ A ELL +G+ V + E+   +GG +   +   GN  ++G H FF
Sbjct: 3  NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG-ISRTVTYKGNRFDIGGHRFF 61

Length = 479

>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK---VGSFIDKHGNHIEMGLH 85
          P+ K+A+IG+G++G+S A  LL + H+V ++E+   +GG    V    D  G  ++ G  
Sbjct: 7  PRRKIAVIGSGISGLSAAW-LLSRRHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFI 65

Query: 86 IFFG-CYNNLFRLMK 99
          ++    Y NL RL K
Sbjct: 66 VYNERTYPNLTRLFK 80

Length = 447

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           +VA+IG G AG+S A  L   GH V I+E+   +GG
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174

Length = 564

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV------GSFIDKHGNHI 80
                V I+GAGLAG+S A EL   G++V I E+R  +GG+       G + D  G +I
Sbjct: 4  PPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYI 63

Length = 450

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
          K+AIIG G+AG+S A  L       EV ++E+   +GG + +     G   E G H F  
Sbjct: 2  KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTV-KIDGFLFERGPHHFLA 60

Length = 444

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 20  PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           P E       K KVA+IGAG AG++ A +L   GH+V ++E  +  GG
Sbjct: 114 PGELPGSRTGK-KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160

Length = 457

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 12/58 (20%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS---------FIGGKVGSFIDKHGNH 79
          +K+AIIGAG+ G++ A  L +QGHEV ++E             IG  V   I K GNH
Sbjct: 1  MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNV---IKKLGNH 55

Length = 373

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63
            L VAI+GAG AG++ A+ L   G +V + E   
Sbjct: 1  KMLDVAIVGAGPAGLALALALARAGLDVTLLERAP 35

Length = 387

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V +IG G+ G+STA EL  +G  V + E      G
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASG 36

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           KVA++G+G AG++ A +L   GH+V ++E    IGG
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           KVAI+G+G AG+S A  L   G+EV +YES S  GG
Sbjct: 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320

Length = 604

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 19  FPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           + PE     G K  VAIIGAG AG++ A  LL +GH+V I+++    GG
Sbjct: 184 YIPERAPKSGKK--VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230

Length = 652

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 22  EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           EPE       KVA+IGAG AG++ A EL   GH V ++E+    GG V
Sbjct: 125 EPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 28  GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73
           G + KVA+IGAG AG++ A  L   GH V ++E     GG V + I
Sbjct: 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNII 582

Length = 1019

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63
             +  +IG  L G+  A+ L   G +VD++E RS
Sbjct: 5  SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFE-RS 38

Length = 386

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
          KVAIIG G+ G+S A  L  +G   ++ + E+   +GGK+ + + K G  IE+G
Sbjct: 2  KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT-VRKDGFPIELG 54

Length = 451

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V IIG G+ G+S A  L ++G +V + E+    GG
Sbjct: 6  DVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41

Length = 387

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70
           V IIG G AG++ A+ L   G +V + E         G
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRG 39

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
           KVAIIGAG AG++ A  L   G+EV +Y+
Sbjct: 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYD 48

Length = 352

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72
            V +IG G+AG++ A+EL D G +V + E    IGG++   
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166

Length = 622

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 52  QGHEVDIYESRSFIGGKVGSFIDKH-GNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLR 110
            G  V ++E+R  +GG+  SF D   G  I+ G H+  G Y NL  L+++   +   Q  
Sbjct: 1   AGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGP 60

Query: 111 QALGFLLRTPDAGFSCFADLALTSP 135
           + L      P    S      L +P
Sbjct: 61  R-LPLPFYDPGGRLSRLRLSRLPAP 84

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           K+ ++GAG AG++ A  L  QG  V + E+RS IGG+V
Sbjct: 695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732

Length = 1713

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF--GC 90
             +IGAG  G++ A+ L   G  V + E R   GG+ G  ++  G   + G  +      
Sbjct: 1   AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV-LEDDGFRFDTGPTVITMPEA 59

Query: 91  YNNLFRLMKKFFMDVYRQLRQALGFLLRTPD 121
              LF L  +   D    +     + L   D
Sbjct: 60  LEELFALAGRDLADYVELVPLDPFYRLCWED 90

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
          V I+GAG AG S A  L   G +V + E  S  G K   
Sbjct: 6  VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44

Length = 396

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 27  GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
                KVA+IG+G AG++ A +L   G++V I+E+    GG
Sbjct: 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177

Length = 464

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          VA+IGAG AG+  A EL  +GH V ++E    +GG
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47

Length = 461

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
             KVA+IG+G AG+S A +L  +G++V ++E+   IGG
Sbjct: 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG 468

Length = 752

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
             AIIG G+AG + A+ L  +G +V +YE
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYE 290

Length = 662

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHG 77
          +AI+GAG+AG++ A  L + G EV ++E    +GG++ +     G
Sbjct: 4  IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGG 48

Length = 331

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 20  PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
            P PE   G +  V I+GAGLAG++ A +LL  G +V + E R+  GG+V
Sbjct: 152 SPIPEE--GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199

Length = 738

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG--------KVGSFIDKHGNHI 80
          I+GAGL+G   A      G  V I E R+ IGG        + G  + K+G HI
Sbjct: 6  IVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHI 59

Length = 374

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 27  GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
               L VA+IG+G A M+ A++ ++QG  V + E R  IGG
Sbjct: 95  NERPLHVAVIGSGGAAMAAALKAVEQGARVTLIE-RGTIGG 134

Length = 561

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
          KV I+G G+ G+S A+ L   G  VD+ E
Sbjct: 6  KVLIVGGGIGGLSAAIALRRAGIAVDLVE 34

Length = 375

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61
          +KV I G G+ G++ A+ L  +G EV ++E+
Sbjct: 1  MKVLIAGGGIGGLTLALTLHQRGIEVVVFEA 31

Length = 413

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          VAI+GAG +G++ A  L   G +V ++E +   GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          V I+GAG +G++ A  L   G +V I+E +   GG
Sbjct: 33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67

Length = 262

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
            V ++GAG  G+  A     +G +V + E+   +GG++
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175

Length = 415

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGG 67
              VAIIGAG +G++ A  L   G  +  I+E R  +GG
Sbjct: 7  THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46

Length = 443

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 19  FPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           FP +       K  V I+GAGL+G++ A +L+  G +V + E R   GG+V
Sbjct: 178 FPAQSS-----KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223

Length = 881

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
          V +IG G+AG++ A  L D   +V + ESR  IGG+V
Sbjct: 3  VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39

Length = 435

>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 11/29 (37%), Positives = 22/29 (75%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
           +A+IGAG+ G++TA  L  +G++V +++
Sbjct: 3  HIAVIGAGITGVTTAYALAQRGYQVTVFD 31

Length = 410

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72
          V +IGAG+AG++ A  L  +G+ V + E  +  GG  G+F
Sbjct: 4  VVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF 43

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 20  PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73
            P+ +       KVA+IGAG AG+S    L   GH V ++E +   GG V + I
Sbjct: 530 KPQGK---SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNII 580

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIY--ESRSFIGG 67
          V ++GAGLAG+  A EL D G  V +   E+ + +GG
Sbjct: 7  VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43

Length = 549

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEV 56
          V +IG+GLAG++ A+E  + G +V
Sbjct: 2  VVVIGSGLAGLAAALEAAEAGLKV 25

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68
          V ++GAG AG S A  L D+G  V + E +SF   K
Sbjct: 3  VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYK 38

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           KVA++G+G AG++ A +L   GH V ++E     GG
Sbjct: 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PLN02487	569	zeta-carotene desaturase	99.95
COG3349	485	Uncharacterized conserved protein [Function unknow	99.89
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.89
PLN02612	567	phytoene desaturase	99.8
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.69
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.68
COG2081	408	Predicted flavoproteins [General function predicti	99.61
PRK07233	434	hypothetical protein; Provisional	99.59
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.5
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.46
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.35
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.27
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.27
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.26
PRK07208	479	hypothetical protein; Provisional	99.24
PLN02268	435	probable polyamine oxidase	99.22
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.21
PLN02576	496	protoporphyrinogen oxidase	99.19
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.19
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.07
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.07
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.05
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.01
PLN02568	539	polyamine oxidase	99.0
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.99
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.99
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.92
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.92
PLN02529	738	lysine-specific histone demethylase 1	98.89
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.88
PLN02676	487	polyamine oxidase	98.86
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.85
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.82
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.81
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.8
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.78
PLN03000	881	amine oxidase	98.75
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.65
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.65
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.62
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.55
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.53
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.47
PLN02976	1713	amine oxidase	98.46
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.45
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.45
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.45
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.41
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.37
PRK10157	428	putative oxidoreductase FixC; Provisional	98.36
PLN02852	491	ferredoxin-NADP+ reductase	98.36
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.35
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.34
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.34
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.33
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.31
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.3
PRK12831	464	putative oxidoreductase; Provisional	98.3
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.3
PRK10015	429	oxidoreductase; Provisional	98.29
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.29
PRK07121	492	hypothetical protein; Validated	98.28
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.27
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.27
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.26
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.25
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.25
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.22
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.21
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.21
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.21
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.2
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.19
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.19
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.18
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.18
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.17
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.17
PTZ00188	506	adrenodoxin reductase; Provisional	98.17
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.16
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.16
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.16
PRK08163	396	salicylate hydroxylase; Provisional	98.16
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.16
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.16
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.15
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.15
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.15
PRK09126	392	hypothetical protein; Provisional	98.14
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.14
PLN02463	447	lycopene beta cyclase	98.14
PRK07236	386	hypothetical protein; Provisional	98.13
PRK06116	450	glutathione reductase; Validated	98.13
PRK07045	388	putative monooxygenase; Reviewed	98.13
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.13
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.12
PRK08274	466	tricarballylate dehydrogenase; Validated	98.12
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.12
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.12
PRK06753	373	hypothetical protein; Provisional	98.11
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.11
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.11
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.11
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.1
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.1
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.1
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.09
PRK06370	463	mercuric reductase; Validated	98.09
PRK06847	375	hypothetical protein; Provisional	98.09
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.09
PRK08013	400	oxidoreductase; Provisional	98.09
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.09
PTZ00058	561	glutathione reductase; Provisional	98.08
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.08
PRK10262	321	thioredoxin reductase; Provisional	98.08
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.08
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.08
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.08
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.08
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.07
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.07
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.07
TIGR02053	463	MerA mercuric reductase. This model represents the	98.06
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.06
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.06
PLN02661	357	Putative thiazole synthesis	98.05
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.05
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.05
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.05
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.05
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.04
PRK06184	502	hypothetical protein; Provisional	98.04
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.04
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.04
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.04
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.04
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.03
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.02
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.02
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.02
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.02
PRK14694	468	putative mercuric reductase; Provisional	98.02
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.01
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.01
PRK07588	391	hypothetical protein; Provisional	98.01
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.01
PRK07538	413	hypothetical protein; Provisional	98.01
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.01
PRK06475	400	salicylate hydroxylase; Provisional	98.01
PRK14727	479	putative mercuric reductase; Provisional	98.0
PRK06185	407	hypothetical protein; Provisional	98.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.0
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.0
PRK08244	493	hypothetical protein; Provisional	97.99
PRK05868	372	hypothetical protein; Validated	97.99
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.98
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.98
PLN02985	514	squalene monooxygenase	97.98
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.98
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.97
PRK13748	561	putative mercuric reductase; Provisional	97.96
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.96
PRK07190	487	hypothetical protein; Provisional	97.96
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.96
PRK06370	463	mercuric reductase; Validated	97.96
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.95
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.95
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.94
PRK06126	545	hypothetical protein; Provisional	97.94
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.94
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.93
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.93
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.92
PTZ00052	499	thioredoxin reductase; Provisional	97.92
PRK11445	351	putative oxidoreductase; Provisional	97.92
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.92
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.92
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.91
PLN02697	529	lycopene epsilon cyclase	97.91
PRK07804	541	L-aspartate oxidase; Provisional	97.9
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.9
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.89
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.89
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.89
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.89
PRK06834	488	hypothetical protein; Provisional	97.89
PLN02815	594	L-aspartate oxidase	97.89
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.88
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.88
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.88
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.87
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.87
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.87
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.87
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.86
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.85
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.85
PLN02507	499	glutathione reductase	97.85
PRK12839	572	hypothetical protein; Provisional	97.85
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.85
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.85
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.85
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.85
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.85
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.84
TIGR02053	463	MerA mercuric reductase. This model represents the	97.83
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.83
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.82
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.82
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.81
PTZ00367	567	squalene epoxidase; Provisional	97.81
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.81
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.81
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.81
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.81
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.8
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.8
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.8
PRK06175	433	L-aspartate oxidase; Provisional	97.79
PRK07395	553	L-aspartate oxidase; Provisional	97.79
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.78
PRK08401	466	L-aspartate oxidase; Provisional	97.78
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.78
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.77
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.77
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.77
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.76
PRK08294	634	phenol 2-monooxygenase; Provisional	97.76
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.75
PRK05257	494	malate:quinone oxidoreductase; Validated	97.75
PRK13984	604	putative oxidoreductase; Provisional	97.74
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.74
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.74
PLN02546	558	glutathione reductase	97.73
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.73
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.73
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.72
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.71
PLN02507	499	glutathione reductase	97.71
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.7
PRK08071	510	L-aspartate oxidase; Provisional	97.7
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.68
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.68
PRK09897	534	hypothetical protein; Provisional	97.67
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.67
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.67
PRK08275	554	putative oxidoreductase; Provisional	97.66
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.66
PRK06116	450	glutathione reductase; Validated	97.66
PRK07846	451	mycothione reductase; Reviewed	97.66
COG0579	429	Predicted dehydrogenase [General function predicti	97.65
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.65
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.65
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.64
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.63
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.63
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.61
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.6
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.59
PRK09077	536	L-aspartate oxidase; Provisional	97.57
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.57
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.57
PRK06996	398	hypothetical protein; Provisional	97.56
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.55
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.54
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.54
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.53
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.53
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.53
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.51
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.5
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.5
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.49
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.49
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.49
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.48
PRK14694	468	putative mercuric reductase; Provisional	97.48
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.47
PLN02546	558	glutathione reductase	97.44
PRK13748	561	putative mercuric reductase; Provisional	97.44
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.43
PRK14727	479	putative mercuric reductase; Provisional	97.42
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.42
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.42
PTZ00058	561	glutathione reductase; Provisional	97.4
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.39
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.37
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.36
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.35
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.33
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.33
PRK07512	513	L-aspartate oxidase; Provisional	97.33
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.32
PRK02106	560	choline dehydrogenase; Validated	97.31
PRK10262	321	thioredoxin reductase; Provisional	97.27
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.26
COG3573	552	Predicted oxidoreductase [General function predict	97.25
PTZ00052	499	thioredoxin reductase; Provisional	97.24
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.23
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.21
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.21
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.19
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.18
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.17
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.17
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.15
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.11
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.1
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.1
PLN02785	587	Protein HOTHEAD	97.09
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.02
PLN02268	435	probable polyamine oxidase	97.02
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.01
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.0
PRK07846	451	mycothione reductase; Reviewed	96.99
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.98
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.96
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.95
KOG2852	380	consensus Possible oxidoreductase [General functio	96.95
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.92
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.91
COG4716	587	Myosin-crossreactive antigen [Function unknown]	96.86
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.86
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.85
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.79
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.78
PLN02676	487	polyamine oxidase	96.77
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.72
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.7
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.66
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.62
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.53
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	96.53
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.46
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.42
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.37
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.34
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.29
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.28
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.23
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.19
KOG2853	509	consensus Possible oxidoreductase [General functio	96.18
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.17
PLN03000	881	amine oxidase	96.12
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.06
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.04
PLN02568	539	polyamine oxidase	95.94
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.92
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.91
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.9
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.89
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.85
PLN02529	738	lysine-specific histone demethylase 1	95.84
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	95.79
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.79
PLN02976	1713	amine oxidase	95.78
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.63
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.61
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	95.58
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.54
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.49
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.36
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.25
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.24
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.2
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.18
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.17
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.16
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.12
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.08
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.05
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.96
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.95
PLN02328	808	lysine-specific histone demethylase 1 homolog	94.88
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.88
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.86
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.82
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	94.81
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.8
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.54
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.5
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.37
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	94.32
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.31
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.22
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.02
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	94.01
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	93.97
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.87
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.85
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.81
PRK12831	464	putative oxidoreductase; Provisional	93.81
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	93.78
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.72
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	93.67
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.67
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.63
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.61
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.54
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.53
PRK04148	134	hypothetical protein; Provisional	93.51
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.51
PLN02602	350	lactate dehydrogenase	93.46
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.45
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.43
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.39
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	93.25
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.24
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.18
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.18
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.15
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.09
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.09
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.99
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.97
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	92.87
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.84
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	92.84
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.8
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	92.72
PRK08306	296	dipicolinate synthase subunit A; Reviewed	92.71
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.71
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	92.71
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.66
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.57
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.38
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.34
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.33
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.28
PRK12548	289	shikimate 5-dehydrogenase; Provisional	92.26
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.23
PRK07208	479	hypothetical protein; Provisional	92.2
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.12
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	91.94
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.94
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.93
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.92
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	91.8
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	91.75
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.64
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.6
PRK11883	451	protoporphyrinogen oxidase; Reviewed	91.59
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.57
PRK07417	279	arogenate dehydrogenase; Reviewed	91.57
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.54
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.5
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.49
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.42
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	91.41
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.35
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	91.22
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	91.13
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.04
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.97
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.97
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	90.95
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	90.87
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	90.81
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	90.79
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	90.77
PLN02494	477	adenosylhomocysteinase	90.6
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.59
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.56
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.56
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	90.54
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.51
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	90.48
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.48
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	90.44
PRK06223	307	malate dehydrogenase; Reviewed	90.41
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.36
PRK12779	944	putative bifunctional glutamate synthase subunit b	90.34
KOG2755	334	consensus Oxidoreductase [General function predict	90.28
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.12
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	90.1
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	90.1
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	90.04
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.01
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	89.93
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.93
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.82
PRK09496	453	trkA potassium transporter peripheral membrane com	89.8
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.68
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	89.67
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	89.65
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.61
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	89.59
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	89.5
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	89.42
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	89.39
PTZ00075	476	Adenosylhomocysteinase; Provisional	89.39
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	89.32
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.28
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	89.11
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	89.08
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	88.99
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	88.98
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.96
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	88.95

>PLN02487 zeta-carotene desaturase

Probab=99.95  E-value=7.9e-27  Score=227.00  Aligned_cols=121  Identities=71%  Similarity=1.117  Sum_probs=112.5

Q ss_pred             ceeEEEEEcCCCCCCCCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCCCCCCCCCceEEecc
Q 023333          144 GSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGS  223 (283)
Q Consensus       144 ~~~~~~Via~g~~~~~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd  223 (283)
                      ++.++++++..+.+++.++++|++.+..++...||...+.++.|..++++++++|.+.||.+.+||.++||++|+|+|||
T Consensus       446 g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD  525 (569)
T PLN02487        446 GSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGS  525 (569)
T ss_pred             ceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCc
Confidence            45678889989999999999999999999999999877777888999999999999999999999999999999999999


Q ss_pred             cccCCCCCcchhHHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 023333          224 YTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAF  264 (283)
Q Consensus       224 ~t~~~~~~~~ega~~~g~~aA~~il~~~g~~~g~~~~~~~~  264 (283)
                      ||.++|+++||||++||..||+.|+.+.+.+.+++.+.+.-
T Consensus       526 ~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~~~~~~~~~  566 (569)
T PLN02487        526 YTKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRKKLAAE  566 (569)
T ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            99999999999999999999999999999999999877654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=5.9e-23  Score=193.00  Aligned_cols=104  Identities=38%  Similarity=0.542  Sum_probs=90.6

Q ss_pred             EEEEcCCCCCCCCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCCCCCCCCCceEEecccccC
Q 023333          148 QCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQ  227 (283)
Q Consensus       148 ~~Via~g~~~~~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd~t~~  227 (283)
                      +.+++.+..+.....++++..+...+.+.+|.....+ .++++++..++++...||...+||.+.||++|++++|||+..
T Consensus       361 e~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~  439 (485)
T COG3349         361 EKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQ  439 (485)
T ss_pred             hhhhcccccccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeec
Confidence            3355555556666677888888888889999888777 678899999999999999999999999999999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhcc
Q 023333          228 DYIDSMEGPTLSDRQASAYICNAGE  252 (283)
Q Consensus       228 ~~~~~~ega~~~g~~aA~~il~~~g  252 (283)
                      .|..+||+|+.+|..||+.++...+
T Consensus       440 ~~~~smE~A~~sGl~AA~~v~~~~~  464 (485)
T COG3349         440 PYLGSMEGATLSGLLAANAILDNLG  464 (485)
T ss_pred             CCcCccchhhhhHHHHHHHHHHhhh
Confidence            9999999999999999999986643

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.89  E-value=4.6e-22  Score=191.00  Aligned_cols=103  Identities=66%  Similarity=1.067  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCCCCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCCCCCCCCCceEEecccc
Q 023333          146 LLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYT  225 (283)
Q Consensus       146 ~~~~Via~g~~~~~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd~t  225 (283)
                      +++++++.++.++..++++|++.+..++...||.....++.+..+++.++++|.+.||...+||.++||++|+|+||||+
T Consensus       372 ~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t  451 (474)
T TIGR02732       372 LLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYT  451 (474)
T ss_pred             EEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEecccc
Confidence            35667777777777889999999999999999976666777888999999999999999999999999999999999999


Q ss_pred             cCCCCCcchhHHHHHHHHHHHHH
Q 023333          226 KQDYIDSMEGPTLSDRQASAYIC  248 (283)
Q Consensus       226 ~~~~~~~~ega~~~g~~aA~~il  248 (283)
                      .++|+++||||++||..||+.||
T Consensus       452 ~~~~pas~egAv~sG~~aA~~i~  474 (474)
T TIGR02732       452 QQDYIDSMEGATLSGRQAAAAIL  474 (474)
T ss_pred             ccCchHHHhHHHHHHHHHHHHhC
Confidence            99999999999999999999774

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=99.80  E-value=7.2e-19  Score=172.26  Aligned_cols=108  Identities=31%  Similarity=0.557  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCCCCCChHHHHHHhcccccccCCCCc-----cccccccceeeecccccccCCCCCCCCCCCCCCCCceEEe
Q 023333          147 LQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQ-----GLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLA  221 (283)
Q Consensus       147 ~~~Via~g~~~~~~~~~eL~~~l~~~l~~~~P~l~-----~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~la  221 (283)
                      +..+++....+...+.+++++.+..++...||...     ..++....+++.+.++|...|+.+.++|.+++|++|+|+|
T Consensus       439 l~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lA  518 (567)
T PLN02612        439 LELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLA  518 (567)
T ss_pred             EEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEe
Confidence            44455555556667889999999999999999642     2234445677888998988999988999999999999999


Q ss_pred             cccccCCCCCcchhHHHHHHHHHHHHHHhccch
Q 023333          222 GSYTKQDYIDSMEGPTLSDRQASAYICNAGEEL  254 (283)
Q Consensus       222 Gd~t~~~~~~~~ega~~~g~~aA~~il~~~g~~  254 (283)
                      |||+.++|+++||||+.||..||++|+...+.+
T Consensus       519 Gd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~~  551 (567)
T PLN02612        519 GDYTKQKYLASMEGAVLSGKLCAQSIVQDYELL  551 (567)
T ss_pred             ecceeCCchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999887653

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.69  E-value=8.8e-16  Score=146.64  Aligned_cols=93  Identities=37%  Similarity=0.626  Sum_probs=76.3

Q ss_pred             CCCCCChHHHHHHhcccccccCCCC----ccccccccceeeecccccccCCCCCCCCCCCCCCCCceEEecccccCCCCC
Q 023333          156 PYMPLPNDEIIRRVARQVGTLFPLP----QGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYID  231 (283)
Q Consensus       156 ~~~~~~~~eL~~~l~~~l~~~~P~l----~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd~t~~~~~~  231 (283)
                      .+...+.+++++.+..++...||..    ....+.+..+++.+.+.|...||...++|..++|++|+|+|||++.+.|+.
T Consensus       357 ~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g  436 (453)
T TIGR02731       357 DWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLA  436 (453)
T ss_pred             hhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccc
Confidence            3344567899999999999999842    123344456668888888788897778898899999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHH
Q 023333          232 SMEGPTLSDRQASAYIC  248 (283)
Q Consensus       232 ~~ega~~~g~~aA~~il  248 (283)
                      +||||+.+|..||++|+
T Consensus       437 ~~egAi~SG~~AA~~v~  453 (453)
T TIGR02731       437 SMEGAVLSGKLCAQAIV  453 (453)
T ss_pred             cHHHHHHHHHHHHHHhC
Confidence            99999999999999874

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=7.9e-16  Score=147.88  Aligned_cols=76  Identities=41%  Similarity=0.718  Sum_probs=67.8

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHH-HHHH
Q 023333           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRL-MKKF  101 (283)
Q Consensus        26 ~~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~-~~~~  101 (283)
                      ...+.++|||||||+|||+||.+|.+.|++|+|||..+++|||+.++....+..++.|++++++.+++.+.. .+++
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~ql   87 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQL   87 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHh
Confidence            334568999999999999999999999999999999999999999999888888999999999999876665 4444

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.61  E-value=2.5e-15  Score=137.64  Aligned_cols=162  Identities=18%  Similarity=0.206  Sum_probs=104.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeecc-ceeeecCChHHHHHHHHHHHHH--
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMG-LHIFFGCYNNLFRLMKKFFMDV--  105 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g-~~~~~~~~~~~~~~~~~~~~~~--  105 (283)
                      ..+||+|||||++||+||+.++++|++|+|||+++.+|.|+..+..++||..+.. ...|...++.--++++..|..+  
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            4689999999999999999999999999999999999999998877777765543 3344444552222222222211  


Q ss_pred             --HHHHHhhhcc--------eeec----------------CCCceEEeecccccCCC----cccccC-CceeE---EEEE
Q 023333          106 --YRQLRQALGF--------LLRT----------------PDAGFSCFADLALTSPE----DYYGEG-QGSLL---QCVL  151 (283)
Q Consensus       106 --~~~~~~~~g~--------~~~~----------------~~~~~~~~~d~~~~~~~----~~~~~~-~~~~~---~~Vi  151 (283)
                        ..++-...|+        -+|+                +..++.+.+...+..++    .|.... .+..+   ..|+
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence              1111112222        0111                12333444433332221    232221 12123   3488


Q ss_pred             cCCCCCCCCC-----hHHHHHHhcccccccCCCCccccccccce
Q 023333          152 TPGNPYMPLP-----NDEIIRRVARQVGTLFPLPQGLEVIWSSF  190 (283)
Q Consensus       152 a~g~~~~~~~-----~~eL~~~l~~~l~~~~P~l~~l~~~~~~v  190 (283)
                      ++|+.++|..     +..++++++|++.+++|+++++.++|+.+
T Consensus       162 AtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~  205 (408)
T COG2081         162 ATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFL  205 (408)
T ss_pred             ecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCCHHHH
Confidence            9999999865     56999999999999999999999998765

>PRK07233 hypothetical protein; Provisional

Probab=99.59  E-value=3.8e-14  Score=133.90  Aligned_cols=92  Identities=18%  Similarity=0.222  Sum_probs=70.6

Q ss_pred             CChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCCCCCCCCCceEEecccccCCCCCcchhHHHH
Q 023333          160 LPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLS  239 (283)
Q Consensus       160 ~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd~t~~~~~~~~ega~~~  239 (283)
                      ...+++++.+.+++...+|.+....+....+.+...+.....||...++|..++|++++|+|||+....+...|++|+.+
T Consensus       340 ~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~s  419 (434)
T PRK07233        340 MSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRA  419 (434)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHH
Confidence            34568888888888888885433344455566766666666677667778888899999999995545566789999999


Q ss_pred             HHHHHHHHHHhc
Q 023333          240 DRQASAYICNAG  251 (283)
Q Consensus       240 g~~aA~~il~~~  251 (283)
                      |..||++|++..
T Consensus       420 G~~aA~~i~~~~  431 (434)
T PRK07233        420 GRRVAREILEDR  431 (434)
T ss_pred             HHHHHHHHhhhh
Confidence            999999998764

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.50  E-value=1.7e-14  Score=135.83  Aligned_cols=160  Identities=18%  Similarity=0.256  Sum_probs=82.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceee--ccceeeecCC---hHHHHH-HHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE--MGLHIFFGCY---NNLFRL-MKKFFMD  104 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~--~g~~~~~~~~---~~~~~~-~~~~~~~  104 (283)
                      |||+|||||+|||+||+.|++.|.+|+||||++.+|.|+..+.+++||..+  .....|...+   ..+.+. ++.+-..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            699999999999999999999999999999999999999988878888766  4455555542   222221 2222111


Q ss_pred             HHHHHHhhhccee--------ec----------------CCCceEEeecccccCC----Cc-ccccC-CceeE---EEEE
Q 023333          105 VYRQLRQALGFLL--------RT----------------PDAGFSCFADLALTSP----ED-YYGEG-QGSLL---QCVL  151 (283)
Q Consensus       105 ~~~~~~~~~g~~~--------~~----------------~~~~~~~~~d~~~~~~----~~-~~~~~-~~~~~---~~Vi  151 (283)
                      ....+-...|+..        |+                ...++++..+..+..+    .. |.... ....+   .+|+
T Consensus        81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEE
Confidence            1111111122200        00                0112222222211111    11 21111 22233   3388


Q ss_pred             cCCCCCCCCC-----hHHHHHHhcccccccCCCCccccccccce
Q 023333          152 TPGNPYMPLP-----NDEIIRRVARQVGTLFPLPQGLEVIWSSF  190 (283)
Q Consensus       152 a~g~~~~~~~-----~~eL~~~l~~~l~~~~P~l~~l~~~~~~v  190 (283)
                      ++|+..+|..     +.+|++.++|++.+++|+++++.+.+..+
T Consensus       161 AtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~~~~~  204 (409)
T PF03486_consen  161 ATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCDEPWL  204 (409)
T ss_dssp             ----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE--HHHH
T ss_pred             ecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeecchhh
Confidence            9999988765     45999999999999999999999987654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.46  E-value=1.7e-13  Score=96.90  Aligned_cols=65  Identities=40%  Similarity=0.754  Sum_probs=56.5

Q ss_pred             EECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeec--CChHHHHHHHH
Q 023333           35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG--CYNNLFRLMKK  100 (283)
Q Consensus        35 IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~  100 (283)
                      |||||++||++|+.|+++|++|+|||+++.+||++.+... ++..++.|+++++.  .++++.+++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~   67 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLRE   67 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcC
Confidence            8999999999999999999999999999999999998874 67899999999987  45777777765

...

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.35  E-value=2.2e-11  Score=106.41  Aligned_cols=70  Identities=27%  Similarity=0.505  Sum_probs=62.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .+|+|||+|++||+||+.|+..|.+|+||||..-+|||+.+.+ ..+..++.|+++|......+.++++..
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~   71 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEAL   71 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHH
Confidence            4699999999999999999999999999999999999998876 455569999999998888888777665

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.27  E-value=7.8e-12  Score=119.53  Aligned_cols=71  Identities=30%  Similarity=0.445  Sum_probs=64.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~----G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .++|+|||||++||+||+.|+++    |++|+|||+++++||++.+.. ..|+.+|.|+|++++.+++++++++++
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~l   76 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDL   76 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHc
Confidence            36899999999999999999999    999999999999999999875 578899999999999998888887765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.27  E-value=6.8e-12  Score=119.26  Aligned_cols=70  Identities=34%  Similarity=0.561  Sum_probs=62.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ++|+|||||++||+||+.|+++|  ++|+|||+++++||++.+.. .+|..+|.|+|++++.+++++.+++++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l   72 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKEL   72 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHc
Confidence            47999999999999999999988  89999999999999999875 568889999999988888777776665

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.26  E-value=2e-10  Score=107.20  Aligned_cols=73  Identities=33%  Similarity=0.469  Sum_probs=58.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .+..+|||||+|.+||++|+.|.+.|++|+|+|.++++|||+.+.+. .+...+.|.+++..+.+..+.+.+++
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~   77 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEF   77 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhc
Confidence            45789999999999999999999999999999999999999988775 56667777666555444444444333

>PRK07208 hypothetical protein; Provisional

Probab=99.24  E-value=2.1e-11  Score=117.27  Aligned_cols=73  Identities=34%  Similarity=0.556  Sum_probs=65.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +..++|+|||||++||+||+.|+++|++|+|+|+.+++||++.+.. ..|..++.|+|+++..+++++++++++
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l   74 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEI   74 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHh
Confidence            3467999999999999999999999999999999999999988764 567889999999998888888887776

>PLN02268 probable polyamine oxidase

Probab=99.22  E-value=2.2e-11  Score=115.79  Aligned_cols=70  Identities=34%  Similarity=0.541  Sum_probs=59.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecC--ChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC--YNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~--~~~~~~~~~~~  101 (283)
                      .+|+|||||+|||+||+.|.++|++|+|||+++++|||+.+.. ..|..+|+|++++++.  .+.+.++++++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~l   72 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRL   72 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHh
Confidence            4799999999999999999999999999999999999998754 5678899999999864  33455555543

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.21  E-value=1.7e-11  Score=117.40  Aligned_cols=70  Identities=24%  Similarity=0.404  Sum_probs=62.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC------CCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~------G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ++|+|||||++||+||++|++.      |++|+|||+++++||++.+.. ..|..+|.|+|+++..+++++++++++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~l   77 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDL   77 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHc
Confidence            5799999999999999999986      379999999999999999876 567889999999998888888888776

>PLN02576 protoporphyrinogen oxidase

Probab=99.19  E-value=3.6e-11  Score=116.17  Aligned_cols=69  Identities=29%  Similarity=0.419  Sum_probs=60.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRL   97 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~   97 (283)
                      .+.++|+|||||++||+||++|+++ |++|+|||+++++||++.+.. .+|+.++.|+|++...++.+..+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l   79 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSA   79 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHH
Confidence            3467999999999999999999999 999999999999999999876 57889999999998766655444

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.19  E-value=7.6e-10  Score=103.89  Aligned_cols=93  Identities=30%  Similarity=0.556  Sum_probs=75.3

Q ss_pred             CCCCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCCCCCCCCCceEEecccccCCCCCcchhH
Q 023333          157 YMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGP  236 (283)
Q Consensus       157 ~~~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd~t~~~~~~~~ega  236 (283)
                      ....+.+++.+.+..++.+.+|......+.+..+.+..++.+...||....+|...+|.++||+|||++...|+.+||||
T Consensus       327 ~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA  406 (419)
T TIGR03467       327 LVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGA  406 (419)
T ss_pred             hccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHH
Confidence            33445778888888888888885433445566677777777777788766788888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023333          237 TLSDRQASAYICN  249 (283)
Q Consensus       237 ~~~g~~aA~~il~  249 (283)
                      +.||..||++|++
T Consensus       407 ~~SG~~aA~~i~~  419 (419)
T TIGR03467       407 VRSGYQAAEAVLK  419 (419)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999863

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.07  E-value=2.6e-10  Score=107.96  Aligned_cols=70  Identities=34%  Similarity=0.600  Sum_probs=62.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ++|+|||||++||+|||+|++++  .+|+|||+.+++||.+.+.. .+|+.+|.|+|.|...-..+.++++++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eL   72 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKEL   72 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHh
Confidence            47999999999999999999999  89999999999999999874 899999999999987766677777766

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.07  E-value=2.7e-10  Score=110.06  Aligned_cols=70  Identities=30%  Similarity=0.504  Sum_probs=59.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCCh-HHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN-NLFRLMK   99 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~-~~~~~~~   99 (283)
                      +.+||||||||+.||+||.+|+++|++|+||||++.+||++.+.. ..|+.++.|++++..... .+++.+.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~   72 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELG   72 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhc
Confidence            468999999999999999999999999999999999999999886 459999999988765543 3444443

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.05  E-value=5.6e-10  Score=104.39  Aligned_cols=71  Identities=35%  Similarity=0.597  Sum_probs=61.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCccccccceeecCCCceeeccceeeec-CChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG-CYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~-~~~~~~~~~~~~  101 (283)
                      ..+|+|||||+|||+||.+|-+.| .+|+|||..+++|||+++.. ...+.+++|++|+|+ ..+.++++.++.
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~-~~d~~ielGAqwihG~~gNpVY~la~~~   93 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIP-FADGVIELGAQWIHGEEGNPVYELAKEY   93 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEE-cCCCeEeecceeecCCCCChHHHHHHHh
Confidence            468999999999999999999776 58999999999999999886 444589999999999 567788877743

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.01  E-value=6.4e-10  Score=107.70  Aligned_cols=56  Identities=29%  Similarity=0.516  Sum_probs=52.4

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeec
Q 023333           33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG   89 (283)
Q Consensus        33 v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~   89 (283)
                      |+|||||++||+||..|+++|++|+|||+++++||++.++. ..|+.++.|++++..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~   56 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITM   56 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEcc
Confidence            68999999999999999999999999999999999999887 578999999998864

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02568 polyamine oxidase

Probab=99.00  E-value=1.1e-09  Score=106.98  Aligned_cols=61  Identities=34%  Similarity=0.553  Sum_probs=55.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-----CcEEEEccCCccccccceeecCCCceeeccceeeecCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG-----HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY   91 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G-----~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~   91 (283)
                      .++|+|||||++||+||++|++.|     ++|+|||+++++||++.++. ..|+.++.|++++++..
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~   70 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIG   70 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCC
Confidence            478999999999999999999887     89999999999999998876 45788999999999753

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.99  E-value=1.1e-09  Score=97.81  Aligned_cols=74  Identities=30%  Similarity=0.404  Sum_probs=65.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecC-CCce-eeccceeeecCChHHHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HGNH-IEMGLHIFFGCYNNLFRLMKKFFM  103 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~-~g~~-~~~g~~~~~~~~~~~~~~~~~~~~  103 (283)
                      +.|++|||+|.+|+..|..|++.|++|+|+||.+++||++....+. .|-. ...|+|.||..+.++|.++..+.+
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e   76 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTE   76 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhh
Confidence            3689999999999999999999999999999999999999877654 4433 568999999999999999988743

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.99  E-value=1.1e-09  Score=105.93  Aligned_cols=59  Identities=32%  Similarity=0.558  Sum_probs=55.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC   90 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~   90 (283)
                      +||+|||||++||+||..|+++|++|+|||+++.+||++.++. ..|+.++.|++++...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~   60 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGL   60 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEec
Confidence            6899999999999999999999999999999999999999886 5789999999998653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.92  E-value=3.2e-09  Score=99.16  Aligned_cols=70  Identities=27%  Similarity=0.407  Sum_probs=59.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCce-eeccceeeecCChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH-IEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~-~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +||+|||||++||++|++|++.|.+|+|+|+.+.+||++.+.. ..+.. .+.|+|.++.....++.++.++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~   72 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDYISPF   72 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHHHHhh
Confidence            6899999999999999999999999999999999999876654 33433 4789999999888888877665

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.92  E-value=2e-09  Score=97.12  Aligned_cols=73  Identities=33%  Similarity=0.644  Sum_probs=64.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceee---cCCCceeeccceeeec-CChHHHHHHHHH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI---DKHGNHIEMGLHIFFG-CYNNLFRLMKKF  101 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~---~~~g~~~~~g~~~~~~-~~~~~~~~~~~~  101 (283)
                      .++.+|+|||+|++||+||+.|+++ ++|++||.+.++||..++..   +.+|..++.|-.+++. .|+++.++++.+
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~i   82 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTI   82 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHc
Confidence            4678999999999999999999865 89999999999999988773   4566678999999987 799999999888

>PLN02529 lysine-specific histone demethylase 1

Probab=98.89  E-value=4.8e-09  Score=105.21  Aligned_cols=66  Identities=35%  Similarity=0.520  Sum_probs=57.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecC-CC--ceeeccceeeecCChH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HG--NHIEMGLHIFFGCYNN   93 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~-~g--~~~~~g~~~~~~~~~~   93 (283)
                      ...++|+|||||++||+||..|+++|++|+|||+++++||++.+.... .|  ..+|+|++|+++...+
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~n  226 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHAN  226 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccc
Confidence            346899999999999999999999999999999999999999887533 13  2689999999987655

>TIGR02730 carot_isom carotene isomerase

Probab=98.88  E-value=3.1e-09  Score=102.86  Aligned_cols=59  Identities=31%  Similarity=0.602  Sum_probs=54.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC   90 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~   90 (283)
                      +||+|||+|++||+||..|+++|++|+||||++.+||++.++. .+|+.++.|++++.+.
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~   59 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGF   59 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheec
Confidence            5899999999999999999999999999999999999999876 5889999999987643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02676 polyamine oxidase

Probab=98.86  E-value=6.7e-09  Score=100.41  Aligned_cols=60  Identities=33%  Similarity=0.536  Sum_probs=53.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCccccccceeecCCCceeeccceeeec
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG   89 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~   89 (283)
                      ..++|+|||||++||+||++|+++|. +|+|||+++++||++.+.. ..|..++.|++++++
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~   85 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEG   85 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEc
Confidence            35799999999999999999999998 6999999999999998754 467788999999964

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.85  E-value=5.5e-09  Score=96.60  Aligned_cols=74  Identities=23%  Similarity=0.360  Sum_probs=62.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcE--EEEccCCccccccceeecCCCceeeccceeeecCCh---HHHHHHHHH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEV--DIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN---NLFRLMKKF  101 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V--~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~---~~~~~~~~~  101 (283)
                      .+.++|+|+|||++||++||+|++++-+|  +++|+.+++||.+++....++..+|.|+..+....+   +.+.++.++
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL   87 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL   87 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence            45789999999999999999999998764  569999999999998666889999999999987765   555555544

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.82  E-value=1e-08  Score=99.55  Aligned_cols=71  Identities=27%  Similarity=0.433  Sum_probs=57.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCccccccceeec-CCCceeeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~----G~~V~vlEk~~~~GG~~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .++++|||||++||+||++|++.    |.+|+|||+.+.+||++.++.+ .+|+.++.|.. +...+.+++++++.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~i   97 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSI   97 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhc
Confidence            58999999999999999999996    6799999999999999987543 35666666644 567777788777554

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.81  E-value=6.4e-11  Score=114.95  Aligned_cols=42  Identities=40%  Similarity=0.545  Sum_probs=38.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||+|.+||+||+.+++.|.+|+|+||.+.+||+..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~  101 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM  101 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            368999999999999999999999999999999999988643

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.80  E-value=1.3e-08  Score=102.74  Aligned_cols=66  Identities=33%  Similarity=0.517  Sum_probs=55.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCC-C--ceeeccceeeecCChH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-G--NHIEMGLHIFFGCYNN   93 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~-g--~~~~~g~~~~~~~~~~   93 (283)
                      .+.++|+|||||++||+||+.|++.|++|+|+|+++++||++.+....+ +  ..+++|++++++...+
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~n  304 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGN  304 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCcc
Confidence            3468999999999999999999999999999999999999998775332 2  2478899998876544

>TIGR00275 flavoprotein, HI0933 family

Probab=98.78  E-value=3.4e-08  Score=93.23  Aligned_cols=44  Identities=30%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCC
Q 023333           34 AIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHG   77 (283)
Q Consensus        34 ~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g   77 (283)
                      +|||||++||+||+.|+++|++|+|+||++.+|+++..+.++++
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grc   44 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRC   44 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceE
Confidence            69999999999999999999999999999999998876543333

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN03000 amine oxidase

Probab=98.75  E-value=2.5e-08  Score=101.01  Aligned_cols=69  Identities=30%  Similarity=0.498  Sum_probs=59.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCC---CceeeccceeeecCChHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH---GNHIEMGLHIFFGCYNNLFRL   97 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~---g~~~~~g~~~~~~~~~~~~~~   97 (283)
                      +.++|+|||||++||.||+.|++.|++|+|+|+.+++||++.+....+   +..+|+|++++++...+.+..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~  254 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGI  254 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHH
Confidence            458999999999999999999999999999999999999998875322   466899999999886655443

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.65  E-value=2.4e-08  Score=85.15  Aligned_cols=41  Identities=34%  Similarity=0.557  Sum_probs=38.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..||+|+|||+|||+|||+|+++|.+|+|||++-.+||-+.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            47999999999999999999999999999999999998754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.65  E-value=2.6e-08  Score=85.10  Aligned_cols=41  Identities=37%  Similarity=0.515  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||++|+++|++|.|||++..+||.+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            58999999999999999999999999999999999998765

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.62  E-value=8.9e-08  Score=89.00  Aligned_cols=62  Identities=34%  Similarity=0.668  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHhCCCcEEEEccCCccccccceeecCC-CceeeccceeeecCChHHHHHHHHH
Q 023333           40 LAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-GNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        40 ~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +|||+||++|+++|++|+|||+++++|||+.++.... |..++.|+++++..+.++..+++++
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l   63 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDEL   63 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHh
Confidence            5899999999999999999999999999999988554 8999999999999888888888776

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.55  E-value=9.6e-08  Score=91.74  Aligned_cols=44  Identities=39%  Similarity=0.520  Sum_probs=40.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ...++|+|||||++||+||.+|.+.|++|+|||+++.+||.+..
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            34689999999999999999999999999999999999999864

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.53  E-value=9.6e-07  Score=83.15  Aligned_cols=39  Identities=26%  Similarity=0.407  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.++
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  182 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR  182 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence            468999999999999999999999999999998876543

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.47  E-value=5.2e-07  Score=85.02  Aligned_cols=58  Identities=24%  Similarity=0.304  Sum_probs=48.9

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHhC-CC-cEEEEccCCc
Q 023333            7 LVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRSF   64 (283)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIG~G~aGL~aA~~l~~~-G~-~V~vlEk~~~   64 (283)
                      +..-..-.+-+|.|.++...+.+.+||+|||||++|+++|++|+++ |. +|+|+|+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373         7 LLKEGLRGHRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             HHHHHhccCCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            3444555667889999988877889999999999999999999995 85 8999999764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN02976 amine oxidase

Probab=98.46  E-value=2.7e-07  Score=96.92  Aligned_cols=61  Identities=34%  Similarity=0.545  Sum_probs=54.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC   90 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~   90 (283)
                      .++|+|||||++|+++|+.|++.|++|+|||+++.+||++.......+..+++|++++++.
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~  753 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGV  753 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecc
Confidence            4789999999999999999999999999999999999998876544577789999999875

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.45  E-value=2.3e-07  Score=82.28  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||||++||+||+.|+++|++|+|+||++.+||.+
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            6899999999999999999999999999999999998764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.45  E-value=2e-07  Score=87.87  Aligned_cols=43  Identities=37%  Similarity=0.407  Sum_probs=39.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ..+||+|||||+||++||+.|+++|.+|+|+||.+.+|-+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            3689999999999999999999999999999999999987654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.45  E-value=2.3e-07  Score=82.45  Aligned_cols=41  Identities=34%  Similarity=0.595  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~   65 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW   65 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc
Confidence            58999999999999999999999999999999999988653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.41  E-value=3.6e-07  Score=94.62  Aligned_cols=42  Identities=29%  Similarity=0.485  Sum_probs=39.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..++|+|||+|+|||+||++|+++|++|+|||+.+.+||.+.
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            468999999999999999999999999999999999999754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.37  E-value=6.8e-07  Score=85.65  Aligned_cols=37  Identities=41%  Similarity=0.556  Sum_probs=33.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +.+.+||+|||||++|++||+.|+++|++|+|+|+.+
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3456899999999999999999999999999999975

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.36  E-value=5e-07  Score=86.05  Aligned_cols=39  Identities=36%  Similarity=0.509  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||||++|++||+.|+++|++|+|+||.+.+|.+
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            589999999999999999999999999999999877644

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.36  E-value=7.7e-07  Score=85.85  Aligned_cols=44  Identities=41%  Similarity=0.498  Sum_probs=39.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEccCCccccccce
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~--~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ...++|+|||+|++||.||..|++  .|++|+|||+.+.+||.+..
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            345799999999999999999987  79999999999999997763

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.35  E-value=4.7e-07  Score=86.23  Aligned_cols=44  Identities=45%  Similarity=0.611  Sum_probs=41.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      ..++|+|||||+|||++|..|.+.|++|+||||.+.+||.+...
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            46899999999999999999999999999999999999988654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.34  E-value=7.1e-07  Score=92.29  Aligned_cols=42  Identities=43%  Similarity=0.620  Sum_probs=39.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..++|+|||||++||+||++|+++|++|+|||+.+.+||.+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~  577 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK  577 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence            458999999999999999999999999999999999999865

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.34  E-value=1.2e-05  Score=75.03  Aligned_cols=37  Identities=24%  Similarity=0.466  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+.+|..|++.|.+|+++++.+.+.
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l  177 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL  177 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence            4689999999999999999999999999999987653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.33  E-value=4.7e-07  Score=76.73  Aligned_cols=39  Identities=38%  Similarity=0.615  Sum_probs=32.8

Q ss_pred             EEECCCHHHHHHHHHHHhCCCc-EEEEccCCcccccccee
Q 023333           34 AIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSF   72 (283)
Q Consensus        34 ~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~~~GG~~~~~   72 (283)
                      +|||||++||++|++|.++|.+ |+|||+++.+||.+..+
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~   40 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY   40 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence            6999999999999999999999 99999999999998753

...

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.31  E-value=3.5e-08  Score=88.45  Aligned_cols=172  Identities=17%  Similarity=0.200  Sum_probs=108.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee-ecCCCceeeccceeeecCChHHHHHHHHHHHHHHHHHH
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF-IDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLR  110 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~-~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (283)
                      .|+|||+|.+||+|+-.+...|-.|+++|++..+||+-... ...+|-+.+..-+..                       
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~-----------------------   67 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLH-----------------------   67 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcc-----------------------
Confidence            79999999999999999999988899999999999984321 111222111110000                       


Q ss_pred             hhhcceeecCCCceEEeecccccCCCcccccCCceeEEEEEcCCCCCCCCChHHHHHHhcccccccCCCCcc-ccccccc
Q 023333          111 QALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVGTLFPLPQG-LEVIWSS  189 (283)
Q Consensus       111 ~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~Via~g~~~~~~~~~eL~~~l~~~l~~~~P~l~~-l~~~~~~  189 (283)
                                      ..|    +|+-|+.+..       .++.+    ....+|++.+..+...+..||.+ +.++...
T Consensus        68 ----------------i~D----sp~lf~~Dtl-------~saks----k~~~eLm~~La~~S~~AvewL~~ef~lkld~  116 (477)
T KOG2404|consen   68 ----------------IKD----SPELFVKDTL-------SSAKS----KGVPELMEKLAANSASAVEWLRGEFDLKLDL  116 (477)
T ss_pred             ----------------ccc----ChHHHhhhhh-------hhccc----CCcHHHHHHHHhcCHHHHHHHhhhcccchHH
Confidence                            001    1222222221       11111    35678999999988888899865 7777777


Q ss_pred             eeeecccccccCCCCCCCCCCCCCCCCceEEeccccc----CCCC-CcchhHHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 023333          190 FVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTK----QDYI-DSMEGPTLSDRQASAYICNAGEELVALRKQLAAF  264 (283)
Q Consensus       190 vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd~t~----~~~~-~~~ega~~~g~~aA~~il~~~g~~~g~~~~~~~~  264 (283)
                      +-+-++...+|+     ||-.  -|++..|-.- ..+    .+.. +.=|-..+..+..+..|+..+|+|.||+-..+..
T Consensus       117 la~lgGHSvpRT-----Hr~s--~plppgfei~-~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sg  188 (477)
T KOG2404|consen  117 LAQLGGHSVPRT-----HRSS--GPLPPGFEIV-KALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASG  188 (477)
T ss_pred             HHHhcCCCCCcc-----cccC--CCCCCchHHH-HHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCC
Confidence            888889999998     8766  3444333210 000    1111 1124566677778888888899999998665444


Q ss_pred             h
Q 023333          265 E  265 (283)
Q Consensus       265 ~  265 (283)
                      |
T Consensus       189 e  189 (477)
T KOG2404|consen  189 E  189 (477)
T ss_pred             C
Confidence            4

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.30  E-value=7.5e-07  Score=85.43  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|+.||++|++.|++|+|+|+.+.+||.+.
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~   45 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT   45 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence            358999999999999999999999999999999989999864

>PRK12831 putative oxidoreductase; Provisional

Probab=98.30  E-value=1.1e-06  Score=84.66  Aligned_cols=43  Identities=37%  Similarity=0.509  Sum_probs=39.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+.++|+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            4568999999999999999999999999999999999998764

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.30  E-value=7.7e-07  Score=84.78  Aligned_cols=39  Identities=31%  Similarity=0.588  Sum_probs=33.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ||+|||||++|++||+.+++.|.+|+|+|+.+.+||...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence            799999999999999999999999999999999999865

>PRK10015 oxidoreductase; Provisional

Probab=98.29  E-value=8.8e-07  Score=84.39  Aligned_cols=39  Identities=31%  Similarity=0.475  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||||++|++||+.|+++|++|+|+||.+.+|-+
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k   43 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK   43 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence            589999999999999999999999999999998876543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.29  E-value=8.4e-07  Score=85.40  Aligned_cols=41  Identities=34%  Similarity=0.478  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|++|+.||.+++++|++|+|+|+++.+||.+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            58999999999999999999999999999999888999864

>PRK07121 hypothetical protein; Validated

Probab=98.28  E-value=1.6e-06  Score=84.07  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=38.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||+|.+||+||+.++++|.+|+|+||.+..||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999888754

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.27  E-value=1.3e-06  Score=83.52  Aligned_cols=45  Identities=36%  Similarity=0.496  Sum_probs=41.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcccccccee
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSF   72 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~~~GG~~~~~   72 (283)
                      ...++|+|||||.+||++|++|.++|.. ++||||++.+||.+...
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~   51 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN   51 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc
Confidence            4578999999999999999999999998 99999999999987653

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.27  E-value=8.6e-07  Score=86.53  Aligned_cols=41  Identities=41%  Similarity=0.633  Sum_probs=35.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ++|+|||||++||++|..|.+.|++|++|||++.+||.++.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            68999999999999999999999999999999999999864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.26  E-value=1.6e-06  Score=81.75  Aligned_cols=37  Identities=30%  Similarity=0.526  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+||+|||||++||++|..|+++|++|+|+|+.+..
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            3689999999999999999999999999999998764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.25  E-value=1.3e-06  Score=81.29  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      +||+|||||++|+++|++|+++|++|+|+|+.+..+
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~   36 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPH   36 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            589999999999999999999999999999986543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.25  E-value=9.6e-07  Score=80.46  Aligned_cols=35  Identities=43%  Similarity=0.590  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +||+|||||++||++|..|+++|++|+|||+.+..
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            68999999999999999999999999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.22  E-value=1.6e-06  Score=77.66  Aligned_cols=39  Identities=33%  Similarity=0.450  Sum_probs=35.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +||+|||||++||+||..|++.|++|+|+|+.+ +||++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~   39 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT   39 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence            589999999999999999999999999999987 677654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.21  E-value=1.4e-06  Score=83.26  Aligned_cols=40  Identities=30%  Similarity=0.458  Sum_probs=37.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||++++++|++|+|+|+ +.+||.+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence            48999999999999999999999999999998 47899765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.21  E-value=1.6e-06  Score=89.45  Aligned_cols=44  Identities=43%  Similarity=0.672  Sum_probs=40.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ...++|+|||||++||+||++|+++|++|+|+|+.+.+||.+..
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            34689999999999999999999999999999999999998653

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.21  E-value=1.7e-06  Score=81.64  Aligned_cols=39  Identities=36%  Similarity=0.642  Sum_probs=34.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ||+|||+|++||+||+.|+++|.+|+|+||.+..||...
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~   39 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSA   39 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccc
Confidence            799999999999999999999999999999999998543

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.20  E-value=1.7e-06  Score=82.91  Aligned_cols=40  Identities=28%  Similarity=0.524  Sum_probs=37.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ++||+|||||++|+.||.+|++.|++|+|+|+ +.+||.+.
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~   40 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL   40 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence            48999999999999999999999999999999 88999765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.19  E-value=1.9e-06  Score=76.82  Aligned_cols=37  Identities=41%  Similarity=0.547  Sum_probs=34.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      +||+|||||++||++|+.|++.|.+|+|+|+.+.++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            5899999999999999999999999999999987654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.19  E-value=2.4e-06  Score=85.68  Aligned_cols=42  Identities=40%  Similarity=0.604  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +.++|+|||+|++||+||+.|++.|++|+|||+.+.+||.+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            468999999999999999999999999999999999999754

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.18  E-value=2.1e-06  Score=81.98  Aligned_cols=41  Identities=37%  Similarity=0.520  Sum_probs=37.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-ccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~-~~GG~~~   70 (283)
                      .+||+|||||++|++||++|+++|++|+|+|+.+ .+||.+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~   44 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI   44 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence            5899999999999999999999999999999976 4788764

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.18  E-value=2.1e-06  Score=81.90  Aligned_cols=41  Identities=29%  Similarity=0.447  Sum_probs=37.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-cccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~-~GG~~~   70 (283)
                      .+||+|||||++|++||..|++.|++|+|+||.+. +||.+.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            58999999999999999999999999999999874 688643

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.17  E-value=1.9e-06  Score=81.12  Aligned_cols=41  Identities=39%  Similarity=0.687  Sum_probs=39.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+++|||||++|+.||..|++.|++|.++||++.+||++.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma  164 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA  164 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence            57899999999999999999999999999999999999975

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.17  E-value=3.1e-06  Score=81.15  Aligned_cols=43  Identities=44%  Similarity=0.648  Sum_probs=39.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+.++|+|||+|++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            3468999999999999999999999999999999999998754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.17  E-value=2.8e-06  Score=81.44  Aligned_cols=42  Identities=31%  Similarity=0.377  Sum_probs=37.6

Q ss_pred             CCcEEEECCCHHHHHHHHHH-HhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVEL-LDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l-~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .++|+|||+|++||.||.+| ++.|++|+|||+.+.+||.++.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            47899999999999999976 4679999999999999998763

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.16  E-value=2.3e-06  Score=80.65  Aligned_cols=36  Identities=31%  Similarity=0.687  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      +||+|||||++|+++|++|+++|++|+|+||++.+|
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~   37 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA   37 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            599999999999999999999999999999998654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.16  E-value=2.6e-06  Score=89.01  Aligned_cols=42  Identities=38%  Similarity=0.631  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..++|+|||||++||+||++|+++|++|+|||+.+.+||.+.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            358999999999999999999999999999999999998754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.16  E-value=2.3e-06  Score=82.14  Aligned_cols=41  Identities=32%  Similarity=0.511  Sum_probs=37.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++|++||..|+++|++|+|+|+.+ +||.+..
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            5899999999999999999999999999999987 8997653

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.16  E-value=2.5e-06  Score=79.94  Aligned_cols=38  Identities=34%  Similarity=0.579  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      +..+|+|||||++||++|..|++.|++|+|+||.+.++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            35799999999999999999999999999999988754

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.16  E-value=2.2e-06  Score=81.70  Aligned_cols=39  Identities=33%  Similarity=0.620  Sum_probs=36.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCccccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVG   70 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~GG~~~   70 (283)
                      ||+|||+|++||+||+.++++| .+|+|+||.+..||+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~   40 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA   40 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc
Confidence            7999999999999999999999 99999999999888754

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.16  E-value=2.4e-06  Score=81.95  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|+.||..|++.|++|+|+|+. .+||.+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            589999999999999999999999999999995 6898764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.15  E-value=5.5e-06  Score=77.84  Aligned_cols=39  Identities=31%  Similarity=0.522  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||||++|+++|+.|+++  |++|+|+||.+.+|+.
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~   42 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARH   42 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccc
Confidence            47999999999999999999999  9999999998777654

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.15  E-value=2.4e-06  Score=77.86  Aligned_cols=35  Identities=54%  Similarity=0.797  Sum_probs=32.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ||+|||||++|+++|+.|+++|++|+|+|++ .+++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-cccc
Confidence            7999999999999999999999999999999 4444

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.15  E-value=2.4e-06  Score=81.65  Aligned_cols=44  Identities=23%  Similarity=0.328  Sum_probs=41.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      ..+||+|||+|.+|+.+|..|+++|++|+++|+++..||+..+.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~   46 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL   46 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence            35899999999999999999999999999999999999998865

>PRK09126 hypothetical protein; Provisional

Probab=98.14  E-value=2.6e-06  Score=79.74  Aligned_cols=35  Identities=31%  Similarity=0.533  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+||.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            58999999999999999999999999999999875

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.14  E-value=3.3e-06  Score=80.79  Aligned_cols=44  Identities=39%  Similarity=0.581  Sum_probs=40.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ...++|+|||+|++||+||..|++.|++|+|+|+.+.+||++..
T Consensus       121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            34589999999999999999999999999999999999998763

>PLN02463 lycopene beta cyclase

Probab=98.14  E-value=5.1e-06  Score=79.54  Aligned_cols=37  Identities=19%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ...+||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            4468999999999999999999999999999999764

>PRK07236 hypothetical protein; Provisional

Probab=98.13  E-value=3e-06  Score=79.36  Aligned_cols=37  Identities=27%  Similarity=0.466  Sum_probs=34.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++.++|+|||||++||++|+.|+++|++|+||||.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            3468999999999999999999999999999999864

>PRK06116 glutathione reductase; Validated

Probab=98.13  E-value=2.6e-06  Score=81.50  Aligned_cols=40  Identities=25%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||..|+++|++|+|+|+. .+||.+.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            589999999999999999999999999999985 7898764

>PRK07045 putative monooxygenase; Reviewed

Probab=98.13  E-value=2.6e-06  Score=79.73  Aligned_cols=37  Identities=32%  Similarity=0.417  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..++|+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            3579999999999999999999999999999998865

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.13  E-value=3.9e-06  Score=85.43  Aligned_cols=42  Identities=40%  Similarity=0.601  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +.++|+|||||++||+||++|+++|++|+|||+.+.+||.+.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            468999999999999999999999999999999999998754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.12  E-value=0.00012  Score=70.21  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||||..|+-.|..+++.|.+|+|+|+.+++-
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL  209 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL  209 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            4789999999999999999999999999999988764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.12  E-value=3.5e-06  Score=80.98  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=37.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc--cccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~--~GG~~~   70 (283)
                      ..+||+|||+|++||+||+.|+++|.+|+|+||.+.  .||...
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~   46 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSR   46 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccc
Confidence            358999999999999999999999999999999984  677543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.12  E-value=3.5e-06  Score=81.24  Aligned_cols=41  Identities=39%  Similarity=0.456  Sum_probs=38.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|+.||.+|++.|++|+|+|+.+.+||.+.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            58999999999999999999999999999999888999764

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.12  E-value=3.1e-06  Score=79.42  Aligned_cols=32  Identities=34%  Similarity=0.484  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      +||+|||||++|++||+.|++.|++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            68999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06753 hypothetical protein; Provisional

Probab=98.11  E-value=3.1e-06  Score=78.65  Aligned_cols=35  Identities=46%  Similarity=0.859  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ++|+|||||++||++|+.|+++|++|+|+||.+.+
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            47999999999999999999999999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.11  E-value=3.5e-06  Score=81.14  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|+.||.+|++.|++|+|+|+. .+||.+.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   43 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL   43 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence            3689999999999999999999999999999996 7899875

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.11  E-value=2.9e-06  Score=78.82  Aligned_cols=34  Identities=24%  Similarity=0.532  Sum_probs=32.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ||+|||||++||++|+.|+++|++|+|+||.+.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            6999999999999999999999999999999864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.11  E-value=3.5e-06  Score=80.77  Aligned_cols=41  Identities=34%  Similarity=0.468  Sum_probs=37.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            358999999999999999999999999999999 67898764

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.10  E-value=3.7e-06  Score=78.81  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~   41 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP   41 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence            4589999999999999999999999999999998643

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=4e-06  Score=76.26  Aligned_cols=43  Identities=33%  Similarity=0.421  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcccccccee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSF   72 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~~~GG~~~~~   72 (283)
                      ..+||+|||||++||+||+++++++++ ++|+|+ ..+||....+
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~   45 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKT   45 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccc
Confidence            358999999999999999999999999 555554 5677776544

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.10  E-value=1.8e-06  Score=80.61  Aligned_cols=135  Identities=18%  Similarity=0.183  Sum_probs=78.1

Q ss_pred             CCcEEEEccCCccccccceeecCCCceeeccc-eeee---cCChHHHHH-HHHHHHHHHHHHHhhhcc--------eeec
Q 023333           53 GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGL-HIFF---GCYNNLFRL-MKKFFMDVYRQLRQALGF--------LLRT  119 (283)
Q Consensus        53 G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~-~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~g~--------~~~~  119 (283)
                      |.+|+||||++++|.|+..+++++||..+... ..+.   +.++++... +..+-.....++-...|+        .+|+
T Consensus         1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP   80 (376)
T TIGR03862         1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP   80 (376)
T ss_pred             CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence            56899999999999999999888888776432 2221   122232222 222211111111122222        1111


Q ss_pred             ----------------CCCceEEeecccccCCC--ccccc--CCce-e--EEEEEcCCCCCCCCC-----hHHHHHHhcc
Q 023333          120 ----------------PDAGFSCFADLALTSPE--DYYGE--GQGS-L--LQCVLTPGNPYMPLP-----NDEIIRRVAR  171 (283)
Q Consensus       120 ----------------~~~~~~~~~d~~~~~~~--~~~~~--~~~~-~--~~~Via~g~~~~~~~-----~~eL~~~l~~  171 (283)
                                      +..++.+..+..+..++  .|...  .... +  -.+|+|+|+..+|..     +.+++++++|
T Consensus        81 ~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh  160 (376)
T TIGR03862        81 VEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV  160 (376)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence                            12344455444333321  12221  1111 1  245889999998876     4599999999


Q ss_pred             cccccCCCCccccccc
Q 023333          172 QVGTLFPLPQGLEVIW  187 (283)
Q Consensus       172 ~l~~~~P~l~~l~~~~  187 (283)
                      ++.+++|+|+++.+.+
T Consensus       161 ~i~~~~PaL~pl~~~~  176 (376)
T TIGR03862       161 SVAPFAPANCGFLVDW  176 (376)
T ss_pred             cccCCcCeeceEEccC
Confidence            9999999999998865

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.09  E-value=4e-06  Score=78.50  Aligned_cols=34  Identities=32%  Similarity=0.638  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4799999999999999999999999999999875

>PRK06370 mercuric reductase; Validated

Probab=98.09  E-value=4e-06  Score=80.53  Aligned_cols=41  Identities=29%  Similarity=0.464  Sum_probs=36.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||+|++|++||.+|++.|++|+|+|+. .+||.+.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            4689999999999999999999999999999986 5677654

>PRK06847 hypothetical protein; Provisional

Probab=98.09  E-value=4.3e-06  Score=77.66  Aligned_cols=35  Identities=37%  Similarity=0.543  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            47899999999999999999999999999999875

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.09  E-value=5e-06  Score=80.19  Aligned_cols=42  Identities=38%  Similarity=0.655  Sum_probs=38.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..++|+|||+|++||++|..|++.|++|+|+|+.+.+||.+.
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999998753

>PRK08013 oxidoreductase; Provisional

Probab=98.09  E-value=4e-06  Score=79.01  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            58999999999999999999999999999999876

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.09  E-value=4.3e-06  Score=77.62  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.+||+|||||++|+++|++|+++|++|+|+|+....
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~   38 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP   38 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            3589999999999999999999999999999998654

>PTZ00058 glutathione reductase; Provisional

Probab=98.08  E-value=4.9e-06  Score=81.81  Aligned_cols=41  Identities=24%  Similarity=0.435  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|+.||..+++.|.+|.|+|+. .+||.+.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl   87 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV   87 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence            4689999999999999999999999999999996 6899765

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.08  E-value=4.4e-06  Score=81.30  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=36.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+||++..+|.
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt   44 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT   44 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            3589999999999999999999999999999998776554

>PRK10262 thioredoxin reductase; Provisional

Probab=98.08  E-value=4.6e-06  Score=76.19  Aligned_cols=42  Identities=24%  Similarity=0.288  Sum_probs=36.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...+||+|||||++||+||..|+++|++|+++|+. ..||.+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~   45 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   45 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence            34689999999999999999999999999999964 5788754

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.08  E-value=5.4e-06  Score=79.59  Aligned_cols=43  Identities=42%  Similarity=0.630  Sum_probs=39.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...++|+|||||++||++|+.|+++|++|+|+|+.+.+||.+.
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            3458999999999999999999999999999999999988653

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.08  E-value=5.3e-06  Score=83.13  Aligned_cols=42  Identities=45%  Similarity=0.717  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..++|+|||+|++||++|+.|++.|++|+|||+.+.+||.+.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            458999999999999999999999999999999999999764

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.08  E-value=4.6e-06  Score=77.60  Aligned_cols=38  Identities=37%  Similarity=0.603  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      +++||+|||||++|+++|++|+++|.+|+|+|+....+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            46899999999999999999999999999999987654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.08  E-value=6.5e-06  Score=79.32  Aligned_cols=42  Identities=36%  Similarity=0.538  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +.++|+|||+|++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            568999999999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.07  E-value=3.9e-06  Score=79.00  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            4799999999999999999999999999999987

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.07  E-value=4.8e-06  Score=77.87  Aligned_cols=37  Identities=27%  Similarity=0.470  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            3579999999999999999999999999999998654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.07  E-value=4.7e-06  Score=77.79  Aligned_cols=36  Identities=33%  Similarity=0.546  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .+||+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            579999999999999999999999999999998775

>TIGR02053 MerA mercuric reductase

Probab=98.06  E-value=4.6e-06  Score=80.13  Aligned_cols=39  Identities=28%  Similarity=0.524  Sum_probs=36.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +||+|||||++|++||.+|++.|++|+|+|+.+ +||.+.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            689999999999999999999999999999976 788754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.06  E-value=5.2e-06  Score=81.69  Aligned_cols=40  Identities=28%  Similarity=0.366  Sum_probs=36.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||.+|+++|++|+|+|++ ..||.+.
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~   43 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT   43 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence            589999999999999999999999999999995 6788754

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.06  E-value=4.7e-06  Score=77.88  Aligned_cols=37  Identities=38%  Similarity=0.614  Sum_probs=34.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ||+|||||++|+++|+.|++.|++|+|+|+++.+|+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            7999999999999999999999999999999877653

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02661 Putative thiazole synthesis

Probab=98.05  E-value=4.7e-06  Score=76.86  Aligned_cols=39  Identities=41%  Similarity=0.519  Sum_probs=36.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||||++||+||+.|+++ |++|+|+||+..+||.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG  131 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG  131 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence            57999999999999999999986 8999999999998874

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.05  E-value=5.3e-06  Score=78.27  Aligned_cols=35  Identities=34%  Similarity=0.461  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +||+|||||++|++||+.|+++|++|+|+|+.+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~   35 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN   35 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            58999999999999999999999999999998653

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.05  E-value=7.3e-06  Score=81.97  Aligned_cols=42  Identities=40%  Similarity=0.598  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..++|+|||+|++||++|+.|++.|++|+|||+.+.+||.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            468999999999999999999999999999999999998754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.05  E-value=5.2e-05  Score=72.32  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+|+|||+|.+|+.+|..+++.|.+|+++++.+++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  184 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI  184 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence            468999999999999999999999999999987654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.05  E-value=5.9e-06  Score=79.46  Aligned_cols=41  Identities=24%  Similarity=0.476  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++|++||.+|++.|++|+|+|+. .+||.+..
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~   44 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN   44 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            589999999999999999999999999999985 67887653

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.04  E-value=5.7e-06  Score=76.70  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +||+|||||++|+++|++|+++|++|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK06184 hypothetical protein; Provisional

Probab=98.04  E-value=5.6e-06  Score=80.33  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.++|+|||||++||++|..|+++|++|+|+||.+.+
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3589999999999999999999999999999998765

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.04  E-value=5.3e-06  Score=77.97  Aligned_cols=35  Identities=40%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            47999999999999999999999999999999884

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.04  E-value=7e-06  Score=84.16  Aligned_cols=41  Identities=24%  Similarity=0.313  Sum_probs=36.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+.++|+|||+|++||+||++|+++|++|+|+|+.+..|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            35689999999999999999999999999999998765543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.04  E-value=4.8e-06  Score=77.86  Aligned_cols=34  Identities=32%  Similarity=0.552  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~---G~~V~vlEk~   62 (283)
                      +++||+|||||++|+++|+.|+++   |++|+|||+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            568999999999999999999998   9999999995

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.04  E-value=6.5e-06  Score=80.00  Aligned_cols=39  Identities=23%  Similarity=0.422  Sum_probs=35.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+||++..+|
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G   43 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG   43 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence            358999999999999999999999999999999976544

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.03  E-value=5.9e-06  Score=81.17  Aligned_cols=41  Identities=37%  Similarity=0.621  Sum_probs=38.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--ccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--FIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~--~~GG~~~   70 (283)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||.+  ..||+..
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            5799999999999999999999999999999999  7888754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.02  E-value=6.6e-06  Score=81.27  Aligned_cols=42  Identities=29%  Similarity=0.499  Sum_probs=39.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||+|++||+||+.++++|.+|+|+||.+..||....
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~   50 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF   50 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence            689999999999999999999999999999999999987653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.02  E-value=6.8e-06  Score=85.92  Aligned_cols=42  Identities=29%  Similarity=0.450  Sum_probs=39.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++||+||+.|++.|++|+|+|+.+.+||.+..
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            579999999999999999999999999999999999998753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.02  E-value=6e-06  Score=80.48  Aligned_cols=40  Identities=25%  Similarity=0.479  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..||+|||+| +||+||+++++.|.+|+|+||.+..||...
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~   46 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA   46 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence            6799999999 999999999999999999999998888653

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.02  E-value=8.6e-06  Score=81.78  Aligned_cols=38  Identities=34%  Similarity=0.544  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||||++|+++|++|+++|++|+|+|+...+|.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~  297 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQ  297 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccc
Confidence            47999999999999999999999999999999865543

>PRK14694 putative mercuric reductase; Provisional

Probab=98.02  E-value=7.1e-06  Score=79.01  Aligned_cols=41  Identities=32%  Similarity=0.550  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|++||.+|++.|++|+|+|+. .+||.+.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            4689999999999999999999999999999986 6898764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.01  E-value=0.00012  Score=70.02  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+++|||||..|+-+|..|++.|.+|+++++.+++.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~  184 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN  184 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            689999999999999999999999999999987654

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.01  E-value=8.5e-06  Score=78.29  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~   64 (283)
                      ...||+|||||++|+++|++|+++  |.+|+|||+...
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            357999999999999999999998  899999999753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK07588 hypothetical protein; Provisional

Probab=98.01  E-value=6.4e-06  Score=77.18  Aligned_cols=35  Identities=43%  Similarity=0.521  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ++|+|||||++||++|+.|+++|++|+|+||.+..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            48999999999999999999999999999998764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.01  E-value=5.2e-05  Score=77.57  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l  175 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL  175 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence            468999999999999999999999999999987764

>PRK07538 hypothetical protein; Provisional

Probab=98.01  E-value=6.5e-06  Score=77.82  Aligned_cols=35  Identities=34%  Similarity=0.636  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            48999999999999999999999999999998764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.01  E-value=6.2e-06  Score=77.18  Aligned_cols=35  Identities=29%  Similarity=0.557  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..+||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            45899999999999999999999999999999976

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.01  E-value=7.3e-06  Score=77.19  Aligned_cols=36  Identities=39%  Similarity=0.529  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.+|+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus         2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            478999999999999999999999999999998764

>PRK14727 putative mercuric reductase; Provisional

Probab=98.00  E-value=9.1e-06  Score=78.52  Aligned_cols=44  Identities=36%  Similarity=0.546  Sum_probs=40.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ...+|++|||+|++|+.+|+.|++.|.+|+|+|+.+.+||.+..
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            34689999999999999999999999999999999889998753

>PRK06185 hypothetical protein; Provisional

Probab=98.00  E-value=7.3e-06  Score=77.12  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            468999999999999999999999999999999864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.00  E-value=6.2e-06  Score=76.82  Aligned_cols=34  Identities=35%  Similarity=0.536  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFI   65 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~   65 (283)
                      ||+|||||++|+++|+.|+++| ++|+|+|+.+.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            6999999999999999999999 999999998653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.00  E-value=1.1e-05  Score=79.43  Aligned_cols=41  Identities=29%  Similarity=0.599  Sum_probs=38.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||+| +||+||+.+++.|.+|+|+||.+.+||....
T Consensus        16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~   56 (564)
T PRK12845         16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR   56 (564)
T ss_pred             eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence            6899999999 8999999999999999999999999997653

>PRK08244 hypothetical protein; Provisional

Probab=97.99  E-value=8e-06  Score=79.08  Aligned_cols=36  Identities=33%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .+||+|||||++||++|..|++.|++|+|+||.+.+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            479999999999999999999999999999998753

>PRK05868 hypothetical protein; Validated

Probab=97.99  E-value=8.5e-06  Score=76.14  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ++|+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            58999999999999999999999999999998764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.98  E-value=0.00012  Score=75.32  Aligned_cols=36  Identities=28%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||||..|+-+|..|++.|.+|+|+|..+.+
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l  180 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML  180 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            468999999999999999999999999999988764

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.98  E-value=8.1e-06  Score=76.65  Aligned_cols=33  Identities=42%  Similarity=0.645  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++|+|||||++||++|..|++.|++|+|+|+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            579999999999999999999999999999998

>PLN02985 squalene monooxygenase

Probab=97.98  E-value=9e-06  Score=79.26  Aligned_cols=39  Identities=28%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        26 ~~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .....+||+|||||++|+++|+.|+++|++|+|+||.+.
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            344568999999999999999999999999999999753

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.98  E-value=2e-05  Score=77.28  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ...+||+|||||++||++|..|++.|++|+|+||.+.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~   46 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY   46 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            456899999999999999999999999999999998654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.97  E-value=8.1e-06  Score=76.65  Aligned_cols=35  Identities=40%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47899999999999999999999999999999975

>PRK13748 putative mercuric reductase; Provisional

Probab=97.96  E-value=8.7e-06  Score=80.06  Aligned_cols=41  Identities=39%  Similarity=0.587  Sum_probs=37.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|+.||.+|++.|++|.|+|+. .+||.+.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            3589999999999999999999999999999997 7899865

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.96  E-value=9.8e-06  Score=79.59  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||||+.|+++|+.|+++|++|+|+|+.+...|
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G   43 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG   43 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence            58999999999999999999999999999999765433

>PRK07190 hypothetical protein; Provisional

Probab=97.96  E-value=9.8e-06  Score=78.49  Aligned_cols=37  Identities=27%  Similarity=0.153  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+||+|||||++||++|+.|+++|++|+|+||.+.+
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            3579999999999999999999999999999998764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.96  E-value=8.7e-05  Score=70.47  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+.+|..+++.|.+|+++++.+.+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            468999999999999999999999999999987765

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06370 mercuric reductase; Validated

Probab=97.96  E-value=0.00021  Score=68.74  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+.+|..+++.|.+|+++|+.+.+.
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  207 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL  207 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence            3789999999999999999999999999999987654

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.95  E-value=9.8e-06  Score=76.40  Aligned_cols=33  Identities=30%  Similarity=0.592  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .+||+|||||++||++|..|+++|++|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            579999999999999999999999999999996

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.95  E-value=1.5e-05  Score=77.23  Aligned_cols=42  Identities=36%  Similarity=0.578  Sum_probs=38.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +.++|+|||+|++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.94  E-value=9e-06  Score=76.27  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~   64 (283)
                      .+||+|||||++||++|+.|+++|  ++|+|+|+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            379999999999999999999996  99999999865

>PRK06126 hypothetical protein; Provisional

Probab=97.94  E-value=1.2e-05  Score=78.84  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            358999999999999999999999999999999865

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.94  E-value=9.9e-06  Score=76.37  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ++|+|||||++|+++|++|+++|++|+|+|+...+|.
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~   37 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPAL   37 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhh
Confidence            3799999999999999999999999999999865543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.93  E-value=1.2e-05  Score=77.56  Aligned_cols=41  Identities=29%  Similarity=0.502  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc------CCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES------RSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk------~~~~GG~~~   70 (283)
                      .+|++|||+|++|++||+++++.|.+|+|+|+      ...+||.+.
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~   50 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL   50 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence            58999999999999999999999999999998      356777654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.93  E-value=1.1e-05  Score=76.20  Aligned_cols=36  Identities=39%  Similarity=0.723  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~G   66 (283)
                      .+|+|||||++||++|+.|+++| ++|+||||.+.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            37999999999999999999998 5999999987754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.92  E-value=1.6e-05  Score=78.47  Aligned_cols=43  Identities=40%  Similarity=0.635  Sum_probs=39.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+.++|+|||+|++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            4568999999999999999999999999999999999998654

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.92  E-value=1.2e-05  Score=78.23  Aligned_cols=41  Identities=27%  Similarity=0.501  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--------ccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--------FIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~--------~~GG~~~   70 (283)
                      .+||+|||||++|+.||.+|+++|++|+|+|+.+        .+||.+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~   53 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV   53 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence            4899999999999999999999999999999732        4788753

>PRK11445 putative oxidoreductase; Provisional

Probab=97.92  E-value=1.2e-05  Score=74.58  Aligned_cols=34  Identities=32%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +||+|||||++|+++|+.|++. ++|+|+|+.+..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            7999999999999999999999 999999998753

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.92  E-value=1.7e-05  Score=78.57  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..||+|||+|.+||+||+.++++|.+|+|+||.+..||..
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            5899999999999999999999999999999999988853

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.92  E-value=1.3e-05  Score=79.44  Aligned_cols=40  Identities=28%  Similarity=0.493  Sum_probs=36.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..||+|||+|++||+||+.+++.|.+|+|+||.+..||..
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s   42 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS   42 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence            3599999999999999999999999999999998876643

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.91  E-value=1.1e-05  Score=75.28  Aligned_cols=33  Identities=39%  Similarity=0.694  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .||+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            689999999999999999999999999999863

>PLN02697 lycopene epsilon cyclase

Probab=97.91  E-value=2.5e-05  Score=76.25  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ...+||+|||||++||++|+.|++.|++|+|+|+....
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~  143 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF  143 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence            34689999999999999999999999999999986443

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.90  E-value=1.7e-05  Score=77.75  Aligned_cols=41  Identities=22%  Similarity=0.430  Sum_probs=37.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ...||+|||+|.+||+||+.+++.|.+|+|+||.+..||..
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s   55 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGST   55 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCch
Confidence            35899999999999999999999999999999999877643

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.90  E-value=1.6e-05  Score=78.36  Aligned_cols=41  Identities=32%  Similarity=0.519  Sum_probs=38.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|.+||+||+.++++|.+|+|+||.+..||...
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~   46 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA   46 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence            68999999999999999999999999999999998888643

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.89  E-value=1.9e-05  Score=77.45  Aligned_cols=37  Identities=27%  Similarity=0.530  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..++|+|||||++||++|+.|++.|++|+|+||.+.+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4579999999999999999999999999999999764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.89  E-value=1.7e-05  Score=78.06  Aligned_cols=41  Identities=27%  Similarity=0.501  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..||+|||+|.+|++||+.++++|.+|+|+||.+.+||...
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            58999999999999999999999999999999998887543

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.89  E-value=1.4e-05  Score=78.85  Aligned_cols=38  Identities=32%  Similarity=0.439  Sum_probs=35.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ||+|||+|++||+||+.+++.|.+|+|+||.+..||..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            79999999999999999999999999999998776653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.89  E-value=1.6e-05  Score=79.25  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||+|.+||+||+.+++.|.+|+|+||.+..||...
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~   69 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTV   69 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCch
Confidence            357999999999999999999999999999999988776543

>PRK06834 hypothetical protein; Provisional

Probab=97.89  E-value=1.6e-05  Score=77.01  Aligned_cols=36  Identities=36%  Similarity=0.412  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            358999999999999999999999999999999875

>PLN02815 L-aspartate oxidase

Probab=97.89  E-value=2.4e-05  Score=77.57  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..||+|||+|.+||+||+.+++.| +|+|+||.+..||...
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~   68 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTN   68 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHH
Confidence            579999999999999999999999 8999999998887543

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.88  E-value=2.1e-05  Score=72.89  Aligned_cols=42  Identities=43%  Similarity=0.482  Sum_probs=38.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..++|+|||+|++|+.+|..|++.|++|+++|+.+.+||.+.
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            457999999999999999999999999999999999998764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.88  E-value=1.5e-05  Score=79.55  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=35.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||+|++||+||+.+++.|.+|+|+||.+..||.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~   46 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH   46 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            579999999999999999999999999999999876553

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.88  E-value=1.4e-05  Score=76.33  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHh----CCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~----~G~~V~vlEk~~   63 (283)
                      +||+|||||++||++|+.|++    +|++|+|+|+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            589999999999999999998    899999999943

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.87  E-value=1.9e-05  Score=76.99  Aligned_cols=41  Identities=27%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...+||+|||||++||+||.+|++.|++|+|++.  .+||++.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~  249 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL  249 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence            3468999999999999999999999999999986  4898865

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.87  E-value=1.6e-05  Score=74.33  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=34.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK   68 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~   68 (283)
                      ||+|||||++||++|+.|++.  |++|+|+|+.+.+||+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            799999999999999999987  9999999999988764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.87  E-value=1.7e-05  Score=78.66  Aligned_cols=41  Identities=27%  Similarity=0.373  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|.+||+||+.+++.|.+|+|+||.+..+|...
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~   52 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTV   52 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCch
Confidence            57999999999999999999999999999999877666543

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.87  E-value=2.3e-05  Score=77.51  Aligned_cols=43  Identities=33%  Similarity=0.444  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ..+||+|||+|.+|++||+.++++|++|+|+||++.+||....
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   53 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW   53 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            3689999999999999999999999999999999988887553

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=1.7e-05  Score=78.23  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||.+..||...
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~   45 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSA   45 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcch
Confidence            47999999999999999999999999999999987776543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.86  E-value=1.9e-05  Score=76.95  Aligned_cols=41  Identities=27%  Similarity=0.411  Sum_probs=36.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+.+||+|||||++||+||..|++.|++|+|+|.  ++||.+.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            4469999999999999999999999999999974  5888764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.85  E-value=0.00021  Score=68.66  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+++|||||.+|+.+|..+++.|.+|+++|+.+.+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l  205 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL  205 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            368999999999999999999999999999998764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.85  E-value=1.7e-05  Score=79.01  Aligned_cols=36  Identities=25%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+..+|+|||||++||++|+.|+++|++|+|||+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456899999999999999999999999999999975

>PLN02507 glutathione reductase

Probab=97.85  E-value=1.8e-05  Score=76.81  Aligned_cols=41  Identities=29%  Similarity=0.379  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc---------CCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES---------RSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk---------~~~~GG~~~   70 (283)
                      .+||+|||+|++|+.||.++++.|++|.|+|+         .+.+||.+.
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~   74 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV   74 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence            58999999999999999999999999999996         356888764

>PRK12839 hypothetical protein; Provisional

Probab=97.85  E-value=2.3e-05  Score=77.38  Aligned_cols=41  Identities=32%  Similarity=0.484  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|.+||+||+.++++|.+|+|+||.+.+||...
T Consensus         8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            58999999999999999999999999999999999998754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.85  E-value=2e-05  Score=74.47  Aligned_cols=36  Identities=42%  Similarity=0.616  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||||++|+.||+.|+++|++|+|+|+.+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            368999999999999999999999999999986654

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.85  E-value=2e-05  Score=78.64  Aligned_cols=39  Identities=28%  Similarity=0.548  Sum_probs=35.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ..+||+|||||+.|+++|+.|+++|++|+|+|+.+..+|
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            358999999999999999999999999999999976555

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.85  E-value=1.5e-05  Score=74.09  Aligned_cols=42  Identities=36%  Similarity=0.516  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~------G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++||+||++|.+.      .++|+|+||...+||.+.+
T Consensus        76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence            58999999999999999998752      4689999999999998753

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.85  E-value=2.3e-05  Score=77.65  Aligned_cols=40  Identities=23%  Similarity=0.378  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||....+|..
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t   46 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHT   46 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence            5799999999999999999999999999999998776643

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.85  E-value=0.00054  Score=65.96  Aligned_cols=36  Identities=33%  Similarity=0.342  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+|+|||+|..|+.+|..+++.|.+|+|+|+.+++
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  207 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA  207 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            368999999999999999999999999999987754

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.84  E-value=2.1e-05  Score=80.38  Aligned_cols=41  Identities=41%  Similarity=0.660  Sum_probs=39.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .++|+|||.|++||+||-+|.+.||.|+|+||.+++||.+.
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence            58999999999999999999999999999999999999764

>TIGR02053 MerA mercuric reductase

Probab=97.83  E-value=0.00025  Score=68.17  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+++|||+|.+|+.+|..+++.|.+|+++|+.+++
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            378999999999999999999999999999998765

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.83  E-value=2.1e-05  Score=78.64  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+||+|||+|.+||+||+.+++.|.+|+|+||+..+|
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            4799999999999999999999999999999987765

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.82  E-value=0.00038  Score=68.61  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|+|||||.+|+-.|..|++.|.+|+++++.+.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            47899999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.82  E-value=0.00031  Score=67.39  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|..|+.+|..+++.|.+|+++|+.+++.
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  211 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL  211 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            4789999999999999999999999999999987653

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.81  E-value=4e-05  Score=75.84  Aligned_cols=42  Identities=36%  Similarity=0.570  Sum_probs=39.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||+|.+|++||+.++++|++|+|+||++.+||....
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~   57 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT   57 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence            579999999999999999999999999999999999998654

>PTZ00367 squalene epoxidase; Provisional

Probab=97.81  E-value=2.5e-05  Score=76.91  Aligned_cols=35  Identities=31%  Similarity=0.376  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35899999999999999999999999999999975

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.81  E-value=2e-05  Score=76.18  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      +||+|||||++|+++|+.|++.  |.+|+||||.+.+|
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a   38 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA   38 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence            5899999999999999999997  99999999987655

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.81  E-value=2.7e-05  Score=65.58  Aligned_cols=35  Identities=43%  Similarity=0.518  Sum_probs=32.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ||+|||||++||+||..|++.+++|+|+|+.+..+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~   35 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTP   35 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence            69999999999999999999999999999887644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.81  E-value=4.3e-05  Score=76.45  Aligned_cols=41  Identities=32%  Similarity=0.611  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Cccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~-~~~GG~~~   70 (283)
                      .|||+|||+|++|+.||..+++.|.+|+|+|+. +.+||-+.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv  157 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV  157 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence            689999999999999999999999999999974 46898765

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.81  E-value=2.4e-05  Score=77.37  Aligned_cols=41  Identities=27%  Similarity=0.415  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC---CcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G---~~V~vlEk~~~~GG~~~   70 (283)
                      ..||+|||+|++||+||+.+++.|   .+|+|+||.+..|+...
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~   48 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSV   48 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCce
Confidence            479999999999999999999998   89999999998777543

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.80  E-value=2.3e-05  Score=83.31  Aligned_cols=41  Identities=34%  Similarity=0.579  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||.+..||...
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            58999999999999999999999999999999999998754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.80  E-value=2.4e-05  Score=78.10  Aligned_cols=40  Identities=20%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..||+|||+|++||+||+.+++.|.+|+|+||.+..||..
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s   89 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT   89 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence            4799999999999999999999999999999998777653

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.80  E-value=2.5e-05  Score=76.92  Aligned_cols=39  Identities=23%  Similarity=0.363  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-cccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~-~~GG   67 (283)
                      ..+||+|||||++|+.||+.+++.|.+|.++|++. .+|+
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~   42 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ   42 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence            35899999999999999999999999999999983 5654

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.79  E-value=2.4e-05  Score=74.74  Aligned_cols=39  Identities=21%  Similarity=0.334  Sum_probs=35.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||+|.+||+||+.++ .|.+|+|+||.+..||+.
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s   42 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT   42 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence            479999999999999999985 799999999999888764

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.79  E-value=2.7e-05  Score=76.55  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=36.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ...+||+|||+|.+||+||+.++ .|.+|+|+||.+..||..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s   47 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS   47 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence            34689999999999999999996 599999999999888754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.78  E-value=2.6e-05  Score=77.13  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=35.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||+|++||+||+.+++.|  .+|+|+||.+..||..
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s   44 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHS   44 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhh
Confidence            479999999999999999999874  8999999998777643

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.78  E-value=2.8e-05  Score=74.91  Aligned_cols=34  Identities=38%  Similarity=0.672  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +||+|||+|++||+||+.+++.|.+|+|+||.+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            7999999999999999999999999999999864

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.78  E-value=2.8e-05  Score=77.21  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=35.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||+|.+||+||+.+++.|.+|+|+||....+|.
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            579999999999999999999999999999998776665

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.77  E-value=3.6e-05  Score=73.72  Aligned_cols=43  Identities=30%  Similarity=0.460  Sum_probs=39.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ..||++|||+|++|..||.++++.|.+|.++|+.+.+||.+..
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln   45 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN   45 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence            4699999999999999999999999999999999889998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.77  E-value=0.0002  Score=68.68  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..+++|||||.+|+-.|..+++.|.+|+++|+.+++.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il  202 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL  202 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            3689999999999999999999999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR00551 nadB L-aspartate oxidase

Probab=97.77  E-value=3e-05  Score=75.16  Aligned_cols=39  Identities=36%  Similarity=0.572  Sum_probs=35.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..||+|||+|++||+||+.+++.|. |+|+||.+..||..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s   40 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS   40 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence            4699999999999999999999998 99999998777654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.76  E-value=5.1e-05  Score=54.86  Aligned_cols=35  Identities=31%  Similarity=0.532  Sum_probs=33.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      +|+|||||..|+-+|..+++.|.+|+++++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58999999999999999999999999999999876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.76  E-value=4.2e-05  Score=76.47  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~   64 (283)
                      ..++|+|||||++||++|+.|++. |++|+|+|+.+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            368999999999999999999994 999999999864

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.75  E-value=3.4e-05  Score=73.24  Aligned_cols=36  Identities=39%  Similarity=0.465  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+|+|||||++|+.||+.|+++|++|+|+|+.+..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            379999999999999999999999999999877643

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.75  E-value=2.9e-05  Score=75.32  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG   67 (283)
                      ..+||+|||||+.|+++|++|++.  |++|+|+||.+.+|.
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~   44 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVAL   44 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhh
Confidence            458999999999999999999985  789999999877653

>PRK13984 putative oxidoreductase; Provisional

Probab=97.74  E-value=4.4e-05  Score=75.85  Aligned_cols=43  Identities=47%  Similarity=0.568  Sum_probs=39.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+.++|+|||+|++|+++|..|+++|++|+|||+.+.+||.+.
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            4568999999999999999999999999999999999998654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.74  E-value=3.5e-05  Score=74.62  Aligned_cols=42  Identities=19%  Similarity=0.396  Sum_probs=37.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccC--------Cccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESR--------SFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~--------~~~GG~~~   70 (283)
                      ..+||+|||+|++|+.||..+++. |++|.|+|+.        ..+||.+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl   52 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV   52 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence            358999999999999999999997 9999999984        56898765

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.74  E-value=3.6e-05  Score=71.51  Aligned_cols=36  Identities=39%  Similarity=0.594  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+|+|||||++||++|..|+++|++|+|||+...+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            468999999999999999999999999999997554

>PLN02546 glutathione reductase

Probab=97.73  E-value=6.6e-05  Score=73.88  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC---------Cccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR---------SFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~---------~~~GG~~~   70 (283)
                      ++||+|||+|++|+.||..|+++|++|.|+|+.         ..+||.+.
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~  128 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV  128 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence            589999999999999999999999999999962         45677654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.73  E-value=3.2e-05  Score=72.40  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             cEEEECCCHHHHHHHHHH--HhCCCcEEEEccCCcc
Q 023333           32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFI   65 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l--~~~G~~V~vlEk~~~~   65 (283)
                      ||+|||||+|||++|++|  ++.|++|+|+|+++..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            799999999999999999  7789999999998876

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.73  E-value=0.00058  Score=65.91  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ++++|||||..|+..|..+++.|.+|+|+|+.+++.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il  210 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI  210 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            689999999999999999999999999999987653

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.72  E-value=3.8e-05  Score=77.05  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ..||+|||+|.+||+||+.++++|.+|+|+||.+..++.
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~   43 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH   43 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence            579999999999999999999999999999998876553

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.71  E-value=3.6e-05  Score=76.58  Aligned_cols=38  Identities=29%  Similarity=0.370  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||+|++||+||+.+++.  |.+|+|+||.+..++
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            47999999999999999999998  999999999886443

>PLN02507 glutathione reductase

Probab=97.71  E-value=0.00023  Score=69.25  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|..|+-.|..+++.|.+|+|+++.+++
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~  238 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP  238 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence            368999999999999999999999999999987754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.70  E-value=0.00095  Score=64.03  Aligned_cols=37  Identities=27%  Similarity=0.428  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+..|..+++.|.+|+++|+.+.+.
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  205 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL  205 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            4789999999999999999999999999999987654

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.70  E-value=4.4e-05  Score=74.38  Aligned_cols=39  Identities=28%  Similarity=0.355  Sum_probs=35.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||+|.+||+||+.+++ |.+|+|+||.+..||..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            5799999999999999999976 89999999999877764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.68  E-value=0.00037  Score=67.11  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l  213 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL  213 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC
Confidence            689999999999999999999999999999887654

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.68  E-value=4.4e-05  Score=74.93  Aligned_cols=39  Identities=36%  Similarity=0.478  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-ccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~-~GG~~   69 (283)
                      ..||+|||+|.+||+||+.+ +.|.+|+|+||.+. .||..
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s   46 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCT   46 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccc
Confidence            57999999999999999999 99999999999875 45543

>PRK09897 hypothetical protein; Provisional

Probab=97.67  E-value=6.5e-05  Score=73.43  Aligned_cols=39  Identities=36%  Similarity=0.511  Sum_probs=34.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKV   69 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~~   69 (283)
                      ++|+|||||++|+++|.+|.+.+  .+|+|||+++.+|..+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~   42 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM   42 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence            58999999999999999998765  4899999999998443

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.67  E-value=4.6e-05  Score=75.44  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|.+||+||+.+++.  |.+|+|+||.+..||...
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~   46 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTV   46 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChh
Confidence            47999999999999999999987  479999999988777554

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.67  E-value=4.7e-05  Score=75.32  Aligned_cols=41  Identities=22%  Similarity=0.311  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|++||+||+.++++  |.+|+|+||.+..||+..
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~   45 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTV   45 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCch
Confidence            47999999999999999999987  579999999998887654

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08275 putative oxidoreductase; Provisional

Probab=97.66  E-value=4.8e-05  Score=74.87  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~   65 (283)
                      .+||+|||+|.+||+||+.++++  |.+|+|+||.+..
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            57999999999999999999987  6899999999874

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.66  E-value=4.2e-05  Score=68.82  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~G   66 (283)
                      ||+||||+|.+|..+|.+|++.| .+|+|+|+.+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            68999999999999999999997 6999999987643

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06116 glutathione reductase; Validated

Probab=97.66  E-value=0.00053  Score=65.63  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..+++.|.+|+++++.+.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            478999999999999999999999999999987654

>PRK07846 mycothione reductase; Reviewed

Probab=97.66  E-value=0.00052  Score=65.88  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||+|..|+.+|..+++.|.+|+++|+.+++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l  201 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL  201 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            378999999999999999999999999999998765

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.65  E-value=0.00018  Score=68.13  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||+.|+++|+.|++..  ++|+|+||.+.+|.-.+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS   45 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESS   45 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccc
Confidence            3589999999999999999999998  99999999999885443

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.65  E-value=0.00048  Score=66.03  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||||.+|+.+|..+++.|.+|+++|+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            368999999999999999999999999999998765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.65  E-value=6e-05  Score=72.41  Aligned_cols=38  Identities=29%  Similarity=0.568  Sum_probs=34.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +|+|||+|++|++||..|++.|++|+|+|+.+ .||.+.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~   39 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCL   39 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCC
Confidence            89999999999999999999999999999975 677654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.64  E-value=5.5e-05  Score=77.24  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~   64 (283)
                      ++|+|||||++||++|+.|++.  |++|+|+|+++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            4799999999999999999998  899999999986

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.63  E-value=0.001  Score=64.19  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+.+|..+++.|.+|+|+|+.+.+
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  218 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF  218 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence            379999999999999999999999999999998765

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.63  E-value=0.00032  Score=67.33  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||||.+|+.+|..+++.|.+|+++|+.+++
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            368999999999999999999999999999998765

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.61  E-value=6.7e-05  Score=72.77  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~G   66 (283)
                      ..+||+|||||+.|+++|+.|++.+  .+|+|+||.+.+|
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a   83 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA   83 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence            3589999999999999999999963  6999999987544

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.60  E-value=5.8e-05  Score=74.99  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=31.7

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        33 v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      |+|||+|++||+||+.+++.|.+|+|+||.+.++
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~   34 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR   34 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence            6899999999999999999999999999998554

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.59  E-value=0.00082  Score=64.53  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l  204 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            368999999999999999999999999999987765

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.57  E-value=0.0001  Score=72.29  Aligned_cols=40  Identities=30%  Similarity=0.498  Sum_probs=35.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..+||+|||+|.+||+||+.+++. .+|+|+||.+..||..
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t   46 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST   46 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence            357999999999999999999886 8999999998877753

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.57  E-value=9.4e-05  Score=71.24  Aligned_cols=39  Identities=28%  Similarity=0.523  Sum_probs=35.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ++|+|||+|++|+.||..++++|++|+|+|+.+ +||.+.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~   40 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV   40 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence            589999999999999999999999999999875 788765

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.57  E-value=0.0014  Score=63.18  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|..|+..|..+++.|.+|+++|+.+++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i  209 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI  209 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            478999999999999999999999999999997765

>PRK06996 hypothetical protein; Provisional

Probab=97.56  E-value=8.8e-05  Score=69.84  Aligned_cols=36  Identities=28%  Similarity=0.493  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC----CcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G----~~V~vlEk~~~   64 (283)
                      +.+||+|||||++|+++|+.|++.|    ++|+|+|+.+.
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            4589999999999999999999987    47999999753

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.55  E-value=0.0001  Score=71.39  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      ..+||+|||||++|+++|+.|++.  +.+|+|+||.+.+|
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a   44 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA   44 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence            457999999999999999999998  89999999966665

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.54  E-value=0.00016  Score=69.99  Aligned_cols=41  Identities=24%  Similarity=0.482  Sum_probs=38.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..+||+|||||+.|+.+|..++.+|++|+++|+++...|--
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS   51 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS   51 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence            57999999999999999999999999999999999877753

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.54  E-value=0.00017  Score=68.91  Aligned_cols=71  Identities=27%  Similarity=0.413  Sum_probs=51.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC----CcEEEEccCCccccccceeecC-CCceeeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRSFIGGKVGSFIDK-HGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G----~~V~vlEk~~~~GG~~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ++++-|||+|+++|+||.+|.+.+    .+|+|||+.+..||-+....+. .|+.. .|.......+..++++++.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~-RgGR~~~~~~eclwdLls~I   77 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVI-RGGRMMEFHYECLWDLLSSI   77 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeee-cCCccccchhHHHHHHHHhC
Confidence            468899999999999999999864    5899999999999988765543 33333 23333345555566655443

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.53  E-value=9.9e-05  Score=69.13  Aligned_cols=37  Identities=27%  Similarity=0.423  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEE-ccCCccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIY-ESRSFIGGK   68 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vl-Ek~~~~GG~   68 (283)
                      ||+|||||+||+.||+.+++.|.+|+++ ++.+.+|..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~   38 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM   38 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc
Confidence            7999999999999999999999999999 666666643

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.53  E-value=0.0038  Score=59.40  Aligned_cols=38  Identities=13%  Similarity=0.149  Sum_probs=30.2

Q ss_pred             CCCCceEEecccccC---CCCCcchhHHHHHHHHHHHHHHh
Q 023333          213 TPVKNLFLAGSYTKQ---DYIDSMEGPTLSDRQASAYICNA  250 (283)
Q Consensus       213 tpv~~l~laGd~t~~---~~~~~~ega~~~g~~aA~~il~~  250 (283)
                      +..+++|.+||++..   .++.+...|...|..+|+.|...
T Consensus       306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~  346 (424)
T PTZ00318        306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNE  346 (424)
T ss_pred             CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            467999999999874   24555567899999999998766

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.53  E-value=0.00011  Score=71.08  Aligned_cols=41  Identities=29%  Similarity=0.453  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--------ccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--------FIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~--------~~GG~~~   70 (283)
                      .+|++|||+|++|+.||+.+++.|++|.|+|+..        .+||.+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~   50 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV   50 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence            4799999999999999999999999999999741        4777654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.51  E-value=0.00011  Score=72.77  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||+|++||+||+.+++. .+|+|+||.+..+|.
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~   42 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSH   42 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCC
Confidence            47999999999999999999986 899999998765553

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.50  E-value=0.0036  Score=60.31  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||||.+|+.+|..|++.|.+|+++|+.+++
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i  215 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI  215 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            368999999999999999999999999999998764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.50  E-value=0.00075  Score=64.62  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||+|.+|+.+|..+++.|.+|+++++.+.+
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  201 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI  201 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            468999999999999999999999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.49  E-value=0.00013  Score=71.63  Aligned_cols=42  Identities=26%  Similarity=0.420  Sum_probs=37.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||+|.+||.||+.++++|.+|.|+||.+..+|...
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~   46 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV   46 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence            468999999999999999999999999999999988776543

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.49  E-value=0.00013  Score=71.48  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=35.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      +||+|||+|++|+.+|+.|+++|++|+|+|+....||-
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~   38 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL   38 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence            58999999999999999999999999999999888753

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.49  E-value=0.00012  Score=72.78  Aligned_cols=34  Identities=24%  Similarity=0.508  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHH----hCCCcEEEEccCCcc
Q 023333           32 KVAIIGAGLAGMSTAVELL----DQGHEVDIYESRSFI   65 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~----~~G~~V~vlEk~~~~   65 (283)
                      ||+|||+|.+||+||+.++    ++|.+|+|+||.+..
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            7999999999999999998    679999999998763

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.48  E-value=0.00077  Score=64.31  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||||.+|+.+|..+++.|.+|+++|+.+.+.
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  193 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL  193 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence            3689999999999999999999999999999987653

>PRK14694 putative mercuric reductase; Provisional

Probab=97.48  E-value=0.00067  Score=65.33  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++++|||+|.+|+..|..|++.|.+|+++++.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            368999999999999999999999999999863

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.47  E-value=0.0016  Score=63.61  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||||.+|+-+|..|++.|.+|+++|+.+.+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l  387 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL  387 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence            479999999999999999999999999999976643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02546 glutathione reductase

Probab=97.44  E-value=0.001  Score=65.51  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..+|+|||||..|+-.|..+++.|.+|+|+|+.+.+.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il  288 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL  288 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence            4689999999999999999999999999999877653

>PRK13748 putative mercuric reductase; Provisional

Probab=97.44  E-value=0.00095  Score=65.67  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++++|||+|..|+-.|..+++.|.+|+|+++.
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            368999999999999999999999999999974

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.43  E-value=0.00092  Score=64.84  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~---~G~~V~vlEk~~~~G   66 (283)
                      .++++|||||..|+-.|..++.   .|.+|+|+|+.+++.
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il  226 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL  226 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence            4789999999999999976554   499999999987753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.42  E-value=0.0022  Score=61.97  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ++++|||+|..|+-.|..+++.|.+|+++++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            68999999999999999999999999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.42  E-value=0.00018  Score=68.36  Aligned_cols=34  Identities=32%  Similarity=0.614  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+||+|||+|++|++||+.|+++|++|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999999999999864

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.42  E-value=0.00017  Score=66.66  Aligned_cols=36  Identities=33%  Similarity=0.507  Sum_probs=33.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .....||||||||.+|.+.|+.|++.|.+|+|+||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            344689999999999999999999999999999995

>PTZ00058 glutathione reductase; Provisional

Probab=97.40  E-value=0.0032  Score=62.15  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|..|+-.|..+++.|.+|+++|+.+++.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il  273 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL  273 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence            4789999999999999999999999999999887643

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.39  E-value=0.0017  Score=62.99  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      .+++|||||..|+-+|..+++.|.+|+|+++
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~  211 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR  211 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence            5799999999999999999999999999986

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.37  E-value=0.00016  Score=66.70  Aligned_cols=44  Identities=25%  Similarity=0.416  Sum_probs=40.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ....+||+|||+|+.|..||+.+++.|++..++|++..+||-+.
T Consensus        36 ~~~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL   79 (506)
T KOG1335|consen   36 SANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL   79 (506)
T ss_pred             cCccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence            33579999999999999999999999999999999999999765

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.36  E-value=0.00022  Score=67.03  Aligned_cols=52  Identities=29%  Similarity=0.433  Sum_probs=43.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCce
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH   79 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~   79 (283)
                      ++.+|++|||+|.-||.||.+|++.|.+|.|+|+...+||-........|+.
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfK   63 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFK   63 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccc
Confidence            5689999999999999999999999999999999988888765443344443

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.35  E-value=0.0011  Score=63.35  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+++|||+|..|+-.|..+++.|.+|+++|+.+.+
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  193 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLF  193 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            368999999999999999999999999999987654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.33  E-value=0.0003  Score=57.59  Aligned_cols=36  Identities=36%  Similarity=0.658  Sum_probs=30.2

Q ss_pred             EEECCCHHHHHHHHHHHhC-----CCcEEEEccCCccc-cccc
Q 023333           34 AIIGAGLAGMSTAVELLDQ-----GHEVDIYESRSFIG-GKVG   70 (283)
Q Consensus        34 ~IIG~G~aGL~aA~~l~~~-----G~~V~vlEk~~~~G-G~~~   70 (283)
                      +|||+|++|++++.+|.+.     ..+|+|||+++. | |...
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~   42 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAY   42 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccC
Confidence            6999999999999999887     458999999666 6 5544

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.33  E-value=0.007  Score=53.93  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||+|.+|+-+|..+++.+.+|+++++.+.
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~  175 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK  175 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence            46899999999999999999999999999998653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.33  E-value=0.00021  Score=69.67  Aligned_cols=38  Identities=26%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-cccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~-~GG~   68 (283)
                      -..||+|||+|.+||+||+.++  +.+|+|+||.+. .||.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~   46 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGAS   46 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcc
Confidence            3589999999999999999996  579999999987 4544

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.32  E-value=0.00023  Score=73.92  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||+|.+||+||+.+++.|.+|+|+||.+.
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            58999999999999999999999999999999875

>PRK02106 choline dehydrogenase; Validated

Probab=97.31  E-value=0.0003  Score=69.37  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlEk~~~   64 (283)
                      .+|+||||+|.+|+.+|.+|++ .|++|+|||+.+.
T Consensus         5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            4899999999999999999999 7999999999853

>PRK10262 thioredoxin reductase; Provisional

Probab=97.27  E-value=0.0038  Score=56.92  Aligned_cols=35  Identities=31%  Similarity=0.406  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||+|.+|+-.|..|++.+.+|+++++.+.
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence            47899999999999999999999999999998764

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.26  E-value=0.00035  Score=63.49  Aligned_cols=43  Identities=30%  Similarity=0.407  Sum_probs=37.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+.+|+|||||+-|+++|+.|+++|.++++||+.+-+--+-+
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GS   47 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGS   47 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCc
Confidence            3468999999999999999999999999999999887654433

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.25  E-value=0.00038  Score=63.35  Aligned_cols=40  Identities=40%  Similarity=0.675  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc--ccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~--~GG~~   69 (283)
                      ..||||||+|.+||.||..|+.+|++|+|+|+...  +||+.
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            58999999999999999999999999999988654  67764

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.24  E-value=0.0054  Score=59.67  Aligned_cols=32  Identities=31%  Similarity=0.354  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            58999999999999999999999999999863

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.23  E-value=0.011  Score=56.65  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||||..|+-+|..+.+.|.+|+++++.+.
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            47999999999999999999999999999998653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.21  E-value=0.0076  Score=63.42  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~   65 (283)
                      +..+|+|||+|..|+..|..|++.|. .|+|+|..+.+
T Consensus       316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~  353 (985)
T TIGR01372       316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV  353 (985)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch
Confidence            35789999999999999999999995 58899976543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.21  E-value=0.00027  Score=67.30  Aligned_cols=35  Identities=37%  Similarity=0.607  Sum_probs=31.4

Q ss_pred             EECCCHHHHHHHHHHHhCCCcEEEEccCCc--ccccc
Q 023333           35 IIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGKV   69 (283)
Q Consensus        35 IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~--~GG~~   69 (283)
                      |||+|.+||+||+.++++|.+|+|+||.+.  .||..
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s   37 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA   37 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence            799999999999999999999999999985  46643

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.19  E-value=0.00047  Score=62.53  Aligned_cols=33  Identities=36%  Similarity=0.636  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ++||+|||||.+||+||++|.++|+++.|+-+.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g   34 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG   34 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence            589999999999999999999999999988764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.18  E-value=0.00055  Score=64.46  Aligned_cols=36  Identities=25%  Similarity=0.501  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~~   65 (283)
                      .++|+|||||++|++||..|++.|.  +|+|+++.+..
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            4689999999999999999999887  79999988654

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.17  E-value=0.00011  Score=68.10  Aligned_cols=90  Identities=29%  Similarity=0.486  Sum_probs=60.2

Q ss_pred             CCCChHHHHHHhcccccccCCCC--c-cc--cc-cccceeeecccccccCCCCCC--CCCCCCCCC-CceEEecccccCC
Q 023333          158 MPLPNDEIIRRVARQVGTLFPLP--Q-GL--EV-IWSSFVKIAQSLYRGGPGKVP--LRTDQKTPV-KNLFLAGSYTKQD  228 (283)
Q Consensus       158 ~~~~~~eL~~~l~~~l~~~~P~l--~-~l--~~-~~~~vv~~~~a~~~~~Pg~~~--~rp~~~tpv-~~l~laGd~t~~~  228 (283)
                      ...+.+++++.+..++.+.+|..  . ..  .+ .|.. ....+..+...+....  ++|..++|+ ++||+|||++...
T Consensus       352 ~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~  430 (450)
T PF01593_consen  352 DDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSR-DPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPG  430 (450)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTT-STTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSS
T ss_pred             cccchhhhHHHHHHHhhhcccccccccccccccccccc-ccccccccccccccccccccccccCCcceEEEEeecccCCC
Confidence            34567889888888888888841  1 11  01 1111 1222333433333222  566677888 6999999999999


Q ss_pred             CCCcchhHHHHHHHHHHHHH
Q 023333          229 YIDSMEGPTLSDRQASAYIC  248 (283)
Q Consensus       229 ~~~~~ega~~~g~~aA~~il  248 (283)
                      +..+++||+.+|..||++||
T Consensus       431 ~~~~~~gA~~sG~~aA~~il  450 (450)
T PF01593_consen  431 YPGGIEGAILSGRRAAEEIL  450 (450)
T ss_dssp             STTSHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhC
Confidence            88999999999999999986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.17  E-value=0.00045  Score=65.88  Aligned_cols=36  Identities=33%  Similarity=0.559  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~G   66 (283)
                      ++|+|||||++||++|..|++.+  .+|+|+|+++..+
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~   38 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS   38 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence            47999999999999999999875  4899999998754

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.15  E-value=0.0086  Score=56.50  Aligned_cols=39  Identities=13%  Similarity=0.024  Sum_probs=32.3

Q ss_pred             CCCCceEEecccccCCC----CCcchhHHHHHHHHHHHHHHhc
Q 023333          213 TPVKNLFLAGSYTKQDY----IDSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       213 tpv~~l~laGd~t~~~~----~~~~ega~~~g~~aA~~il~~~  251 (283)
                      ...+++|.+||+.....    |.+-+-|.+.|..+|+.|..+.
T Consensus       289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l  331 (405)
T COG1252         289 PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARL  331 (405)
T ss_pred             CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence            45689999999987764    5676889999999999998764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.11  E-value=0.00062  Score=65.07  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      ++|+|||||++|+.||..|++.  +++|+|+|+++..+
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            5899999999999999999876  57999999987644

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.10  E-value=0.00074  Score=66.66  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      +||+|||+|++|+.+|..+++.|.+|+|+|++...+|
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g   37 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIG   37 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence            5899999999999999999999999999999754433

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.10  E-value=0.0097  Score=58.15  Aligned_cols=37  Identities=27%  Similarity=0.411  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.++|+|||||.+|+-+|..|+..+.+|+|+++.+.+
T Consensus       350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            3579999999999999999999999999999977653

>PLN02785 Protein HOTHEAD

Probab=97.09  E-value=0.00093  Score=66.23  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+|+||||+|.+|+.+|.+|++ +.+|+|||+.+.
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            5999999999999999999999 689999999863

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.00089  Score=61.83  Aligned_cols=41  Identities=39%  Similarity=0.524  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~~   70 (283)
                      .++|.|||+|+||+.+|+.|-++  +..|.|+|+.|.++|.++
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR   62 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR   62 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence            45999999999999999999884  689999999999999765

>PLN02268 probable polyamine oxidase

Probab=97.02  E-value=0.00057  Score=64.97  Aligned_cols=91  Identities=22%  Similarity=0.253  Sum_probs=60.3

Q ss_pred             CChHHHHHHhcccccccCCCCc-ccc---ccccceeeecccccccCCCC-CCCCCCCCCCCCceEEecccccCCCCCcch
Q 023333          160 LPNDEIIRRVARQVGTLFPLPQ-GLE---VIWSSFVKIAQSLYRGGPGK-VPLRTDQKTPVKNLFLAGSYTKQDYIDSME  234 (283)
Q Consensus       160 ~~~~eL~~~l~~~l~~~~P~l~-~l~---~~~~~vv~~~~a~~~~~Pg~-~~~rp~~~tpv~~l~laGd~t~~~~~~~~e  234 (283)
                      .+.+++++.+.+++...||... +..   ..|..---..++.....||. ....+..+.|++++|+||+.+...|+.+||
T Consensus       338 ~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~e  417 (435)
T PLN02268        338 LSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVH  417 (435)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHH
Confidence            4567888888888888877421 111   12211000111111124553 233455578999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHh
Q 023333          235 GPTLSDRQASAYICNA  250 (283)
Q Consensus       235 ga~~~g~~aA~~il~~  250 (283)
                      ||+.+|.+||++|+..
T Consensus       418 GA~~sG~raA~~v~~~  433 (435)
T PLN02268        418 GAYSTGVMAAEECRMR  433 (435)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999854

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.01  E-value=0.00083  Score=62.55  Aligned_cols=40  Identities=28%  Similarity=0.542  Sum_probs=37.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .++++|||+|..||.+|..++++|++|+++|+.++++++.
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~  175 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL  175 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence            3799999999999999999999999999999999998874

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.00  E-value=0.0009  Score=63.38  Aligned_cols=33  Identities=39%  Similarity=0.666  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +||+|||+|++|+++|+.++++|++|.|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07846 mycothione reductase; Reviewed

Probab=96.99  E-value=0.00081  Score=64.54  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +|++|||+|++|..||.++  .|.+|.|+|+. .+||-+.
T Consensus         2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~-~~GGtC~   38 (451)
T PRK07846          2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG-TFGGTCL   38 (451)
T ss_pred             CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCccc
Confidence            7999999999999988763  69999999985 5788765

>TIGR03452 mycothione_red mycothione reductase

Probab=96.98  E-value=0.00085  Score=64.42  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+|++|||+|++|..||..  ..|.+|.++|+ +.+||.+.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~   39 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCL   39 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeee
Confidence            4899999999999998654  47999999998 46888765

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.96  E-value=0.0011  Score=63.15  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++++|+|||||.+|+.+|..|.+.+++|+|+|+++.
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            35568999999999999999999877889999998765

>TIGR01810 betA choline dehydrogenase

Probab=96.95  E-value=0.00073  Score=66.16  Aligned_cols=33  Identities=30%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~   64 (283)
                      |+||||+|.+|+.+|.+|++.| ++|+|||+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            7999999999999999999998 69999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.95  E-value=0.00034  Score=62.36  Aligned_cols=41  Identities=34%  Similarity=0.667  Sum_probs=36.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCC------CcEEEEccCCccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQG------HEVDIYESRSFIGGK   68 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G------~~V~vlEk~~~~GG~   68 (283)
                      .+.++|+|+|||+.|.++||+|++++      +.|++||+....||-
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga   54 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA   54 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence            34689999999999999999999987      789999999887753

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.92  E-value=0.002  Score=61.29  Aligned_cols=72  Identities=24%  Similarity=0.353  Sum_probs=48.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--C-cEEEEccCCccccccceeecCCCceeeccceeee---cC-ChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--H-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF---GC-YNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--~-~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~---~~-~~~~~~~~~~~  101 (283)
                      +++|+|||+|.+|+..|.+|.+.-  - .|.|+|+.+..|+-+...........+.-+....   .. ..+++++++..
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~   79 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ   79 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhc
Confidence            368999999999999999998752  1 2999999999987665433333344443322221   22 45577776653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.91  E-value=0.015  Score=58.54  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..+|+|||||..|+-.|..+++.|.+|+++|+.+++.
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll  348 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL  348 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence            3689999999999999999999999999999988754

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=96.86  E-value=0.00046  Score=63.63  Aligned_cols=76  Identities=22%  Similarity=0.360  Sum_probs=50.5

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           26 YGGPKLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        26 ~~~~~~~v~IIG~G~aGL~aA~~l~~~----G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +.-..+.+-|||+|++||++|.+|.|.    |.+++|+|..+..||.........-.-+-.|......++..+|.+++.+
T Consensus        18 E~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemEnhfEc~WDlfrsI   97 (587)
T COG4716          18 ENVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREMENHFECLWDLFRSI   97 (587)
T ss_pred             cccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHHHHHHHHHHHHhcC
Confidence            334468899999999999999999875    5689999999999998543221111112234344444555566655443

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.86  E-value=0.00099  Score=64.04  Aligned_cols=33  Identities=36%  Similarity=0.529  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC---CcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G---~~V~vlEk~~~   64 (283)
                      ||+|||||.+|.++|..|++.+   ++|+|+|+...
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~   36 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI   36 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence            6999999999999999999998   89999999754

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.85  E-value=0.0013  Score=64.70  Aligned_cols=36  Identities=31%  Similarity=0.396  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ...+|++|||+|.+|...|.+|++.|++|+|||+.+
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            457999999999999999999999999999999974

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.79  E-value=0.042  Score=52.74  Aligned_cols=34  Identities=29%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ..+|+|||+|..|+-+|..|.+.|. +|+++++.+
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            5799999999999999999999998 899998754

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.78  E-value=0.066  Score=49.53  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~   63 (283)
                      .++|+|||+|..|+.+|..+.+.|.+ |+|+++.+
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            46899999999999999999999987 99998754

>PLN02676 polyamine oxidase

Probab=96.77  E-value=0.0014  Score=63.48  Aligned_cols=92  Identities=15%  Similarity=0.162  Sum_probs=59.0

Q ss_pred             CChHHHHHHhcccccccCCCCc----cc-cccccceeeecccccccCCCC-CCCCCCCCCCCCceEEecccccCCCCCcc
Q 023333          160 LPNDEIIRRVARQVGTLFPLPQ----GL-EVIWSSFVKIAQSLYRGGPGK-VPLRTDQKTPVKNLFLAGSYTKQDYIDSM  233 (283)
Q Consensus       160 ~~~~eL~~~l~~~l~~~~P~l~----~l-~~~~~~vv~~~~a~~~~~Pg~-~~~rp~~~tpv~~l~laGd~t~~~~~~~~  233 (283)
                      .+.++..+.+...+.+.|+...    .. ..+|..---..++-....||. ....+..+.|+++||+||+.+...|..+|
T Consensus       376 ~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~  455 (487)
T PLN02676        376 QPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYV  455 (487)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccch
Confidence            3456666667777776665211    11 112321111112211234563 23344556799999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhc
Q 023333          234 EGPTLSDRQASAYICNAG  251 (283)
Q Consensus       234 ega~~~g~~aA~~il~~~  251 (283)
                      |||+.||.+||++|+...
T Consensus       456 eGA~~SG~RaA~~I~~~l  473 (487)
T PLN02676        456 HGAYLAGIDTANDLLECI  473 (487)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999999764

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.0016  Score=59.21  Aligned_cols=36  Identities=36%  Similarity=0.574  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ...|.|||||.+|--|||+++++|.+|.++|..+.-
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            467999999999999999999999999999998653

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.70  E-value=0.041  Score=57.59  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=32.1

Q ss_pred             CCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhcc
Q 023333          211 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGE  252 (283)
Q Consensus       211 ~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~g  252 (283)
                      .+|.++++|.+||.+.  .+.++..|+..|..||..|+...+
T Consensus       803 lqTs~pgVFAaGD~a~--Gp~tvv~Ai~qGr~AA~nI~~~~~  842 (1019)
T PRK09853        803 GETSLTNVYMIGDVQR--GPSTIVAAIADARRAADAILSREG  842 (1019)
T ss_pred             cccCCCCEEEEecccc--CchHHHHHHHHHHHHHHHHhhhcC
Confidence            3467899999999863  355667899999999999987654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.015  Score=53.42  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||-+|.-||+-|+.--.-|+++|=.+.
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            58999999999999999999765557999996543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.62  E-value=0.054  Score=52.29  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~   65 (283)
                      ..++|+|||+|..|+-+|..+.+.|. +|++++..+.+
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~  317 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMP  317 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCC
Confidence            35789999999999999998888886 78887766544

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.53  E-value=0.14  Score=47.38  Aligned_cols=37  Identities=11%  Similarity=-0.016  Sum_probs=27.3

Q ss_pred             CCCceEEecccccCC---CCCcchhHHHHHHHHHHHHHHh
Q 023333          214 PVKNLFLAGSYTKQD---YIDSMEGPTLSDRQASAYICNA  250 (283)
Q Consensus       214 pv~~l~laGd~t~~~---~~~~~ega~~~g~~aA~~il~~  250 (283)
                      ..+++|.+||++...   .+.+..-|...|..+|+.|...
T Consensus       270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~  309 (364)
T TIGR03169       270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRAS  309 (364)
T ss_pred             CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHH
Confidence            679999999998542   2333355888899999888654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=96.53  E-value=0.0028  Score=57.42  Aligned_cols=41  Identities=20%  Similarity=0.424  Sum_probs=36.2

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           26 YGGPKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        26 ~~~~~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      ...+++|++|||||+.||+.|..|.-+  +.+|.|+||....+
T Consensus        44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            345689999999999999999998877  88999999998876

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.12  Score=47.11  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||||-+.+-.|..|++.+.+|+++=+.+.
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~  177 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE  177 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc
Confidence            46999999999999999999999999999987654

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.42  E-value=0.037  Score=52.11  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=28.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHh--------------CCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLD--------------QGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~--------------~G~~V~vlEk~~~   64 (283)
                      ..-..++|||||++|.-.|..|++              .-.+|+++|..|.
T Consensus       216 kRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~  266 (491)
T KOG2495|consen  216 KRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH  266 (491)
T ss_pred             hheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence            334679999999999999998864              2356888887653

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0035  Score=57.21  Aligned_cols=53  Identities=25%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-CccccccceeecCCCceeecc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGGKVGSFIDKHGNHIEMG   83 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~-~~~GG~~~~~~~~~g~~~~~g   83 (283)
                      ...+|.+|||||-+||+||..+++.|.+|.+||-- |.+-|  .+|. .+|.|.+.|
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~G--tsWG-lGGTCvNVG   70 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQG--TSWG-LGGTCVNVG   70 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCC--Cccc-cCceeeecc
Confidence            45799999999999999999999999999999852 33322  2332 455565554

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.34  E-value=0.1  Score=54.76  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~-G~-~V~vlEk~~   63 (283)
                      ..++|+|||||..|+-+|..+.+. |. +|+++++..
T Consensus       665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            357999999999999999988875 75 799998765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.29  E-value=0.014  Score=54.14  Aligned_cols=39  Identities=33%  Similarity=0.463  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .++++|||+|..||-.+.--.+.|-+|+++|-.+.+|+.
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~  249 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV  249 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence            478999999999999988888999999999999999875

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.28  E-value=0.0046  Score=50.66  Aligned_cols=33  Identities=42%  Similarity=0.607  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||||..|.++|..|+++|++|+++.+++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~   33 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEE   33 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            589999999999999999999999999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.23  E-value=0.0069  Score=56.57  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~   64 (283)
                      ++|+|||||++|+.+|..+++.+  .+|+|+++.+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            68999999999999999998764  57999998764

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.19  E-value=0.0055  Score=56.79  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~---G~~V~vlEk~~~   64 (283)
                      +|+|||||++|+.+|.+++++   +++|+|+|+++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            589999999999999999643   689999998765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=96.18  E-value=0.0046  Score=56.58  Aligned_cols=35  Identities=37%  Similarity=0.434  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh----CCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~----~G~~V~vlEk~~~   64 (283)
                      +.+|+|||||.+|.+.|+.|.+    .|.+|+|+|+++.
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt  124 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT  124 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence            6899999999999999999865    4799999999875

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.17  E-value=0.0012  Score=56.50  Aligned_cols=40  Identities=38%  Similarity=0.486  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~   69 (283)
                      ..||+|||+|-+||+|||..+++  ..+|.|+|..-.+||-.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa  117 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA  117 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence            35899999999999999999865  47899999998887753

>PLN03000 amine oxidase

Probab=96.12  E-value=0.0043  Score=63.68  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=61.1

Q ss_pred             CCChHHHHHHhcccccccCCC--C---cc---ccccccceeeecccccccCCCCC-CCCCCCCCCC--CceEEecccccC
Q 023333          159 PLPNDEIIRRVARQVGTLFPL--P---QG---LEVIWSSFVKIAQSLYRGGPGKV-PLRTDQKTPV--KNLFLAGSYTKQ  227 (283)
Q Consensus       159 ~~~~~eL~~~l~~~l~~~~P~--l---~~---l~~~~~~vv~~~~a~~~~~Pg~~-~~rp~~~tpv--~~l~laGd~t~~  227 (283)
                      ..+.+++++.+...+...|+-  .   .+   ....|...--..++.....||.. ........|+  +++|+||+.|..
T Consensus       520 ~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~  599 (881)
T PLN03000        520 TMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTR  599 (881)
T ss_pred             cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhC
Confidence            346778888888888777741  0   11   11233221111222222345532 1222334564  689999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhccch
Q 023333          228 DYIDSMEGPTLSDRQASAYICNAGEEL  254 (283)
Q Consensus       228 ~~~~~~ega~~~g~~aA~~il~~~g~~  254 (283)
                      .|+.+|+||..||.+||.+|+...+.+
T Consensus       600 ~~~GTVhGAieSGlRAA~eIl~~l~~~  626 (881)
T PLN03000        600 RYPATMHGAFVTGLREAANMAQSAKAR  626 (881)
T ss_pred             CCCeeHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999886544

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.06  E-value=0.0075  Score=57.84  Aligned_cols=34  Identities=29%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +|+|||.|.+|+++|..|.++|++|+++|+++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            6899999999999999999999999999987654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.04  E-value=0.0088  Score=57.77  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||+|.+|+++|..|+++|++|+++|+.+.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            46899999999999999999999999999997653

>PLN02568 polyamine oxidase

Probab=95.94  E-value=0.0085  Score=58.88  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             CCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhccc
Q 023333          213 TPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE  253 (283)
Q Consensus       213 tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~g~  253 (283)
                      .|.++||+||..|...|+.||+||..||.++|++|+...+-
T Consensus       497 ~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~~  537 (539)
T PLN02568        497 GPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYKC  537 (539)
T ss_pred             CCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhcc
Confidence            34458999999999999999999999999999999987543

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.92  E-value=0.0038  Score=60.09  Aligned_cols=41  Identities=27%  Similarity=0.500  Sum_probs=37.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ....||+|||||.+|-.||.-++-+|+++.++|+.+..-|-
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT  105 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT  105 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence            34589999999999999999999999999999999986664

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.91  E-value=0.011  Score=61.17  Aligned_cols=37  Identities=30%  Similarity=0.599  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~----G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|++|+.+|..|.++    +++|+|+++.+.++
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            46899999999999999999764    47999999998864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.90  E-value=0.012  Score=55.54  Aligned_cols=36  Identities=28%  Similarity=0.553  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~   64 (283)
                      .+++|+|||||.+||.+|..|.++-  .+|+++|+++.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence            3579999999999999999999974  88999999875

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.89  E-value=0.038  Score=55.25  Aligned_cols=36  Identities=36%  Similarity=0.521  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+-+|||||.-||-||..|.+.|++|+|++-.+.+
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l  180 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL  180 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchH
Confidence            456799999999999999999999999999977653

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.85  E-value=0.0075  Score=57.64  Aligned_cols=33  Identities=33%  Similarity=0.539  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ||+|||+|++||++|..|.+. ++|+|+-|.+.-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            899999999999999999988 999999998764

>PLN02529 lysine-specific histone demethylase 1

Probab=95.84  E-value=0.0075  Score=61.20  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=35.8

Q ss_pred             CCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhccc
Q 023333          215 VKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE  253 (283)
Q Consensus       215 v~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~g~  253 (283)
                      .++||+|||+|...|+.+||||+.||.+||++|+.....
T Consensus       562 ~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~  600 (738)
T PLN02529        562 SGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS  600 (738)
T ss_pred             CCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999999999877543

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=95.79  E-value=0.0084  Score=57.99  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      .+||+|||||.+|+.||..+++.|.++.++-.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~   35 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTL   35 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEc
Confidence            48999999999999999999999999888754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.79  E-value=0.012  Score=49.48  Aligned_cols=33  Identities=39%  Similarity=0.558  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||+|..|...|..++..|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            589999999999999999999999999998654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PLN02976 amine oxidase

Probab=95.78  E-value=0.0091  Score=63.99  Aligned_cols=92  Identities=17%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             CChHHHHHHhcccccccCCCC---cc---ccccccceeeecccccccCCCCCC-CCCCCCCCCCc-eEEecccccCCCCC
Q 023333          160 LPNDEIIRRVARQVGTLFPLP---QG---LEVIWSSFVKIAQSLYRGGPGKVP-LRTDQKTPVKN-LFLAGSYTKQDYID  231 (283)
Q Consensus       160 ~~~~eL~~~l~~~l~~~~P~l---~~---l~~~~~~vv~~~~a~~~~~Pg~~~-~rp~~~tpv~~-l~laGd~t~~~~~~  231 (283)
                      .+.+++++.+...+..+|+..   .+   ....|..---..++.....||... .+.....|+++ ||+||+.|...|+.
T Consensus      1087 LSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pG 1166 (1713)
T PLN02976       1087 MSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPD 1166 (1713)
T ss_pred             CCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcc
Confidence            456677777777777777621   11   112342211112222233566422 33344578877 99999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHhc
Q 023333          232 SMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       232 ~~ega~~~g~~aA~~il~~~  251 (283)
                      +|+||+.+|.++|.+|+...
T Consensus      1167 TVHGAIeSG~RAA~eIL~~L 1186 (1713)
T PLN02976       1167 TVGGAMMSGLREAVRIIDIL 1186 (1713)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998664

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.63  E-value=0.013  Score=55.76  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      .+.+||+|||||.+|.-||..+++-|.+.+++-.
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~   59 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTH   59 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence            4579999999999999999999999998887755

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.61  E-value=0.016  Score=52.75  Aligned_cols=34  Identities=41%  Similarity=0.613  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..++++|++|+++|+.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            5799999999999999999999999999999864

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=95.58  E-value=0.065  Score=53.15  Aligned_cols=33  Identities=33%  Similarity=0.468  Sum_probs=28.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEE-EEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVD-IYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~-vlEk~   62 (283)
                      ..+|+|||||..|..+||+|+++|+++. ++|+.
T Consensus        39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle~~   72 (856)
T KOG2844|consen   39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERS   72 (856)
T ss_pred             cccEEEEcCCchhHHHHHHHHHccccceEEEeee
Confidence            4799999999999999999999999854 44543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.54  E-value=0.0081  Score=55.12  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      ..+||+|||||++|-+||++++|+|.+.=++-  .+.||.+.-+
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT  251 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDT  251 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccc
Confidence            35999999999999999999999998754442  3578887643

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.49  E-value=0.022  Score=54.36  Aligned_cols=44  Identities=27%  Similarity=0.434  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      ..+||+|+|.|..-...|..|++.|++|+.+|+++.-||.+.+.
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl   46 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASL   46 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcc
Confidence            46899999999999998999999999999999999999987654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.36  E-value=0.026  Score=55.65  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcc
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFI   65 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~~   65 (283)
                      ....+|.||||||-+|...|.+|++. ..+|+|+|+....
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            45579999999999999999999986 5799999997665

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.25  E-value=0.025  Score=47.48  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=29.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|||+|.++.-+|..|++.|.+|+++=|.+.
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            358999999999999999999999999999988753

...

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.24  E-value=0.03  Score=45.05  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        33 v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      |+|+|+|..|...|++|++.|++|+++-+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999865

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.20  E-value=0.033  Score=51.27  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=38.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...+|..|||||-.|+++|.+++..|.+|.|+|..-.+||-+.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV   60 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV   60 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence            3479999999999999999999999999999999878888754

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.18  E-value=0.032  Score=50.85  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|+|||+|..|...|..|+++|++|+++.+.+
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34689999999999999999999999999998865

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.17  E-value=0.035  Score=51.01  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|..-|..++.+|++|+++|..+.
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.16  E-value=0.017  Score=48.72  Aligned_cols=34  Identities=32%  Similarity=0.529  Sum_probs=27.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..||..|..++++|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            4799999999999999999999999999998875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.12  E-value=0.031  Score=53.44  Aligned_cols=34  Identities=29%  Similarity=0.462  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5789999999999999999999999999999975

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.08  E-value=0.033  Score=50.22  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +.++|.|||+|..|...|..++++|++|+++|+++.
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            346899999999999999999999999999998653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.05  E-value=0.025  Score=58.17  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=29.9

Q ss_pred             EEEECCCHHHHHHHHHHHhC---CCcEEEEccCCccc
Q 023333           33 VAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIG   66 (283)
Q Consensus        33 v~IIG~G~aGL~aA~~l~~~---G~~V~vlEk~~~~G   66 (283)
                      |+|||+|++|+.+|..|.+.   +++|+|+|+.+.++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~   37 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN   37 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence            68999999999999998775   46899999998864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.96  E-value=0.054  Score=43.14  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~   62 (283)
                      ..++++|||+|.+|..+++.|.+.|.+ |+|+-|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468999999999999999999999987 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.95  E-value=0.035  Score=50.06  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .+|.|||+|..|...|..++++|++|+++|.++..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999999999999999999999999999987653

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=94.88  E-value=0.024  Score=58.03  Aligned_cols=92  Identities=23%  Similarity=0.243  Sum_probs=55.9

Q ss_pred             CChHHHHHHhcccccccCCC-------Ccc-ccccccceeeecccccccCCCCC-CCCCCCCCCC--CceEEecccccCC
Q 023333          160 LPNDEIIRRVARQVGTLFPL-------PQG-LEVIWSSFVKIAQSLYRGGPGKV-PLRTDQKTPV--KNLFLAGSYTKQD  228 (283)
Q Consensus       160 ~~~~eL~~~l~~~l~~~~P~-------l~~-l~~~~~~vv~~~~a~~~~~Pg~~-~~rp~~~tpv--~~l~laGd~t~~~  228 (283)
                      .+.+++++.+...+...|+-       ... ....|..---..++.-...||.. ...+....|+  ++||+||+.|...
T Consensus       577 lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~  656 (808)
T PLN02328        577 LSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQ  656 (808)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCC
Confidence            45677888777777666641       111 11223211111122212234432 1122223453  6899999999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHhc
Q 023333          229 YIDSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       229 ~~~~~ega~~~g~~aA~~il~~~  251 (283)
                      |+.+|+||..||.++|.+|+...
T Consensus       657 ~~GtVhGAi~SGlRAA~eIl~~~  679 (808)
T PLN02328        657 YPATMHGAFLSGMREAANILRVA  679 (808)
T ss_pred             CCeEhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.88  E-value=0.04  Score=49.58  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..++++|++|+++|.++.
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            36799999999999999999999999999998653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.86  E-value=0.038  Score=48.13  Aligned_cols=35  Identities=40%  Similarity=0.566  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ++++|||+|-.|...|..|.+.|++|+++|+.+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~   35 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER   35 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence            47999999999999999999999999999998753

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.82  E-value=0.037  Score=49.83  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..++++|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            4799999999999999999999999999998754

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=0.042  Score=47.69  Aligned_cols=43  Identities=23%  Similarity=0.290  Sum_probs=35.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC----cccccccee
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS----FIGGKVGSF   72 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~----~~GG~~~~~   72 (283)
                      ..+|+|||.|+++-.||++++++.++.++||..-    .+||++.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT   54 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT   54 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence            3589999999999999999999999999999642    246665544

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.80  E-value=0.04  Score=45.60  Aligned_cols=36  Identities=33%  Similarity=0.391  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|+|+|.+|+.||..|...|++|+++|..+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~   54 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE   54 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence            348999999999999999999999999999998654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.54  E-value=0.052  Score=49.42  Aligned_cols=34  Identities=26%  Similarity=0.289  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|+|||+|..|...|.+|++.|.+|+++.+..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            3689999999999999999999999999999863

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.50  E-value=0.052  Score=48.85  Aligned_cols=32  Identities=38%  Similarity=0.597  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +|+|||+|..|...|..|++.|++|+++++.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999999843

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.37  E-value=0.06  Score=48.54  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+|.|||+|..|...|..++++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5799999999999999999999999999998764

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=94.32  E-value=0.084  Score=49.61  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=29.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~----G~~V~vlEk~~   63 (283)
                      .+||+|+|||+.|++.|..+...    .++|.++|..+
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            68999999999999988888753    36899999873

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.31  E-value=0.085  Score=45.26  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||||..|+..+..|.+.|.+|+|+.....
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            57999999999999999999999999999987543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.22  E-value=0.066  Score=48.28  Aligned_cols=31  Identities=29%  Similarity=0.586  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      ++|+|||+|..|...|..|+++|++|+++.+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            3699999999999999999999999999987

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.02  E-value=0.07  Score=52.00  Aligned_cols=37  Identities=32%  Similarity=0.460  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+..+|+|+|+|.+||.|+..++..|.+|+++|.++.
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4568999999999999999999999999999998764

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=94.01  E-value=0.076  Score=50.74  Aligned_cols=39  Identities=18%  Similarity=0.311  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG   67 (283)
                      ..+||++||||+.|.+.++.|++.  ..+|.|+||-+.++.
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~   42 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVAL   42 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchh
Confidence            358999999999999999999886  578999999988764

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.97  E-value=0.063  Score=50.33  Aligned_cols=45  Identities=29%  Similarity=0.433  Sum_probs=40.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI   73 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~   73 (283)
                      ..+||+|||-|..--..|...++.|.+|+=+|.++.-||.|.++.
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS   51 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS   51 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee
Confidence            469999999999887777788999999999999999999998753

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.87  E-value=0.083  Score=49.48  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +..+|+|||+|.+|+.+|..|...|.+|+++++.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            34679999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.85  E-value=0.092  Score=47.38  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..+++.|++|+++|+++.
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            36799999999999999999999999999998753

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.81  E-value=0.079  Score=50.39  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|..|+..|..|+++|++|+++|.++.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998665

>PRK12831 putative oxidoreductase; Provisional

Probab=93.81  E-value=0.088  Score=50.78  Aligned_cols=35  Identities=40%  Similarity=0.460  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            35799999999999999999999999999998754

>TIGR02730 carot_isom carotene isomerase

Probab=93.78  E-value=0.13  Score=49.78  Aligned_cols=41  Identities=10%  Similarity=0.136  Sum_probs=33.8

Q ss_pred             CCCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhc
Q 023333          209 TDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       209 p~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~  251 (283)
                      |..+||++|||++|+++..+  ..+-++..+|..+|+.|+.+.
T Consensus       452 ~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~  492 (493)
T TIGR02730       452 PFNRTAIPGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL  492 (493)
T ss_pred             CCCCCCCCCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence            44579999999999998654  345789999999999998754

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.72  E-value=0.099  Score=48.03  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.|||+|..|...|..|+++|++|+++++.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            579999999999999999999999999999864

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=93.67  E-value=0.055  Score=50.11  Aligned_cols=35  Identities=26%  Similarity=0.248  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~   65 (283)
                      +|+++||.|+++|+.|+.|...+ .++..||+.+..
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            79999999999999999998876 899999998753

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.67  E-value=0.1  Score=46.80  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+|.|||+|..|...|..++++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            5799999999999999999999999999997654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.63  E-value=0.1  Score=49.51  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|+|+|+.|+.+|..++..|.+|+++|..+.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            467999999999999999999999999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.61  E-value=0.068  Score=40.47  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..++|+|||||..|..-+..|.+.|.+|+|+-..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            3579999999999999999999999999999876

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.54  E-value=0.14  Score=41.96  Aligned_cols=33  Identities=30%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      ..++|+|||||-.|+.-+..|.+.|++|+|+..
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            357999999999999999999999999999953

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.53  E-value=0.13  Score=46.82  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|||+|..|...|..|.++|++|+++++..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999999999999999999999999999865

>PRK04148 hypothetical protein; Provisional

Probab=93.51  E-value=0.079  Score=42.31  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++++||.| .|...|..|++.|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999 999889999999999999998876

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.51  E-value=0.1  Score=50.64  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|+|+|.|.+|++++..|.+.|.+|++.|..+
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999653

>PLN02602 lactate dehydrogenase

Probab=93.46  E-value=0.14  Score=47.68  Aligned_cols=47  Identities=23%  Similarity=0.370  Sum_probs=35.5

Q ss_pred             CCCCCCCCCCCC--CC-CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           17 CLFPPEPEHYGG--PK-LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        17 ~~~~~~~~~~~~--~~-~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      .+.|.+....++  ++ ++|+|||+|..|.++|+.|...+.  ++.++|.+.
T Consensus        21 ~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         21 FFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             hhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            345444444423  23 699999999999999999998886  699999755

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.45  E-value=0.15  Score=43.70  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..++|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3579999999999999999999999999999764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.43  E-value=0.12  Score=46.85  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..+++.|++|++++.++.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36799999999999999999999999999997653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.39  E-value=0.12  Score=47.36  Aligned_cols=34  Identities=32%  Similarity=0.506  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|+++|++|+++++.+.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998643

>TIGR02734 crtI_fam phytoene desaturase

Probab=93.25  E-value=0.18  Score=48.85  Aligned_cols=88  Identities=14%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             HHHHHHhccccccc-CCCCcccccc--------cc-ceeeecccccccCCC---CCCCCCCC-CCCCCceEEecccccCC
Q 023333          163 DEIIRRVARQVGTL-FPLPQGLEVI--------WS-SFVKIAQSLYRGGPG---KVPLRTDQ-KTPVKNLFLAGSYTKQD  228 (283)
Q Consensus       163 ~eL~~~l~~~l~~~-~P~l~~l~~~--------~~-~vv~~~~a~~~~~Pg---~~~~rp~~-~tpv~~l~laGd~t~~~  228 (283)
                      +++.+++.+.+.+. +|.+.+.-..        +. ......++.+-..+.   ...+||.. .+|++|||++|+++..+
T Consensus       392 ~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG  471 (502)
T TIGR02734       392 PRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPG  471 (502)
T ss_pred             HHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCC
Confidence            35666677777776 8854321111        00 012233444322221   23467754 68999999999998654


Q ss_pred             CCCcchhHHHHHHHHHHHHHHhcc
Q 023333          229 YIDSMEGPTLSDRQASAYICNAGE  252 (283)
Q Consensus       229 ~~~~~ega~~~g~~aA~~il~~~g  252 (283)
                        ..+-++.++|..+|+.|+.+.+
T Consensus       472 --~Gv~g~~~sg~~~a~~il~~~~  493 (502)
T TIGR02734       472 --AGVPGVLGSAKATAKLMLGDLA  493 (502)
T ss_pred             --CCHHHHHHHHHHHHHHHHhhcc
Confidence              3357899999999999987643

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.24  E-value=0.12  Score=49.23  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++++|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4679999999999999999999999999999754

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.18  E-value=0.13  Score=49.52  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4689999999999999999999999999999765

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.18  E-value=0.11  Score=48.55  Aligned_cols=34  Identities=32%  Similarity=0.546  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..||..|.-+++.||+|+++|..+.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.15  E-value=0.11  Score=47.42  Aligned_cols=32  Identities=28%  Similarity=0.520  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +|.|||+|..|...|..|+++|++|+++.+++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            69999999999999999999999999999854

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.09  E-value=0.14  Score=48.87  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|+|.|.+|+++|..|+++|++|+++|..+..
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            468999999999999999999999999999976543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.09  E-value=0.13  Score=46.80  Aligned_cols=34  Identities=32%  Similarity=0.603  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|++.|++|+++++++.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~   35 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPE   35 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998653

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.99  E-value=0.17  Score=43.15  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      ...+|+|||+|..|...|..|++.|. +++++|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45799999999999999999999998 69999976

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.97  E-value=0.12  Score=49.55  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|+|-|.+|++||..|.+.|.+|+++|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            689999999999999999999999999999977665

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=92.87  E-value=0.17  Score=46.06  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|+.++.+|+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            589999999999999999999887 8999998543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.84  E-value=0.16  Score=46.36  Aligned_cols=34  Identities=41%  Similarity=0.623  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|.++|+.|+.+|  .+|.++|++..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            37999999999999999999999  47999998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=92.84  E-value=0.12  Score=49.01  Aligned_cols=33  Identities=39%  Similarity=0.535  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||.|..|+..|..|+++|++|+++++++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999998765

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.80  E-value=0.15  Score=41.90  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.+||-|..|...|.+|.++|++|+++++.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            5899999999999999999999999999998754

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=92.72  E-value=0.19  Score=45.36  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .++|+|||+|.+|.++|+.|++.|. +|+|+++..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            4789999999999999999999997 799999864

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=92.71  E-value=0.17  Score=45.91  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++++|||.|.+|+.++..|++.|.+|+++++.+.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            357999999999999999999999999999998753

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.71  E-value=0.15  Score=49.23  Aligned_cols=34  Identities=18%  Similarity=0.055  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            4689999999999999999999999999999654

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=92.71  E-value=0.16  Score=49.37  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..++++|++|+|+|+++.
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            35799999999999999999999999999998754

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.66  E-value=0.15  Score=49.74  Aligned_cols=35  Identities=37%  Similarity=0.539  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      -++|.|||+|..|...|..++++|++|+++|+++.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46799999999999999999999999999998755

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.57  E-value=0.22  Score=42.43  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++++|+|.|-.|..+|..|.+.|++|+++|.++
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35789999999999999999999999999998753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.38  E-value=0.19  Score=48.68  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|+|.|.+|+++|..|.++|.+|++.|+..
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            4679999999999999999999999999999753

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.34  E-value=0.2  Score=47.40  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|+|.|..|+.+|..++..|.+|+++|..+.
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            467999999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.33  E-value=0.25  Score=41.07  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~-aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..++|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            468999999996 6999999999999999998864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.28  E-value=0.19  Score=48.98  Aligned_cols=36  Identities=33%  Similarity=0.517  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|+|+|..|+.++..+...|..|+++|.++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457999999999999999999999999999998764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=92.26  E-value=0.25  Score=44.62  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~   63 (283)
                      .+.++|+|+|.+|.++|+.|++.|.+ |+|+.++.
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            46899999999999999999999986 99998753

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.23  E-value=0.19  Score=49.16  Aligned_cols=35  Identities=37%  Similarity=0.508  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      -.+|.|||+|..|...|..++++|++|+++|+++.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46799999999999999999999999999998765

>PRK07208 hypothetical protein; Provisional

Probab=92.20  E-value=0.14  Score=49.24  Aligned_cols=96  Identities=14%  Similarity=0.092  Sum_probs=62.0

Q ss_pred             CCCCCCCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCCC---CCCCCCceEEecccccCCCC
Q 023333          154 GNPYMPLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTD---QKTPVKNLFLAGSYTKQDYI  230 (283)
Q Consensus       154 g~~~~~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~---~~tpv~~l~laGd~t~~~~~  230 (283)
                      ++..+..+++++++....++..+.+ .....+.+..+.+...+.....++.....+.   ..++.+|++++|++....| 
T Consensus       363 ~~~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-  440 (479)
T PRK07208        363 GDDLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-  440 (479)
T ss_pred             CCccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-
Confidence            3344456788899888888777543 2233445555666665544333332111111   1256789999999877666 


Q ss_pred             CcchhHHHHHHHHHHHHHHhc
Q 023333          231 DSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       231 ~~~ega~~~g~~aA~~il~~~  251 (283)
                      .+|++|+.+|..+|+.|+...
T Consensus       441 ~~~d~a~~sg~~~a~~i~~~~  461 (479)
T PRK07208        441 NNQDHSMLTAMLAVENIIAGE  461 (479)
T ss_pred             CChhHHHHHHHHHHHHHhcCC
Confidence            467999999999999887663

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.12  E-value=0.17  Score=48.62  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHH-HHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMS-TAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~-aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|.+|++ +|..|.++|++|++.|..+.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            468999999999999 69999999999999997654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=91.94  E-value=0.27  Score=42.84  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCc---EEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHE---VDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~---V~vlEk~~   63 (283)
                      ...+++|+|+|.+|..+|..|.+.|.+   +.|+++..
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            357899999999999999999999974   99999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.94  E-value=0.26  Score=50.27  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +-++|.|||+|..|...|+.++.+|++|+++|.++.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            346899999999999999999999999999998764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.93  E-value=0.23  Score=50.90  Aligned_cols=34  Identities=38%  Similarity=0.441  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~   63 (283)
                      .++|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            47999999999999999999999987 99998764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.92  E-value=0.23  Score=44.82  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++++|||.|..|.+.|..|+..|.+|+++++++.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999998754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=91.80  E-value=0.45  Score=46.04  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHh
Q 023333          207 LRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA  250 (283)
Q Consensus       207 ~rp~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~  250 (283)
                      +++..+||++|||++|+++..+  ..+-++.++|..+|+.|+++
T Consensus       450 ~~~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~~  491 (492)
T TIGR02733       450 FGLSSRTPVKGLWLCGDSIHPG--EGTAGVSYSALMVVRQILAS  491 (492)
T ss_pred             cCCCCCCCCCCeEEecCccCCC--CcHHHHHHHHHHHHHHHhhc
Confidence            3455579999999999998654  33568999999999999864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=91.75  E-value=0.16  Score=45.80  Aligned_cols=34  Identities=35%  Similarity=0.566  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-------CcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG-------HEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G-------~~V~vlEk~~   63 (283)
                      ..+|+|||+|..||+.|..+.+..       .+|+|++-..
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf   43 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF   43 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence            479999999999999998887743       4788886543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.64  E-value=0.24  Score=50.42  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +-++|.|||+|..|...|+.++.+|++|+++|.++.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            457899999999999999999999999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.60  E-value=0.32  Score=44.48  Aligned_cols=35  Identities=31%  Similarity=0.634  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ++.+|.|||+|..|.++|+.|...|.  ++.++|.+.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            46799999999999999999998886  689999755

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=91.59  E-value=0.2  Score=47.54  Aligned_cols=85  Identities=12%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             CCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCC----CCCCCCCCCceEEecccccCCCCCcch
Q 023333          159 PLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPL----RTDQKTPVKNLFLAGSYTKQDYIDSME  234 (283)
Q Consensus       159 ~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~----rp~~~tpv~~l~laGd~t~~~~~~~~e  234 (283)
                      ....+++++.+...+.+.++...  ......+.+...+.....||....    ++.... ++++|+||||+.   ...++
T Consensus       362 ~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g~~i~  435 (451)
T PRK11883        362 DATDEELVAFVLADLSKVMGITG--DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---GVGLP  435 (451)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCC--CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---CccHH
Confidence            34567888888777777765321  222333444445544445553221    222222 679999999964   23689


Q ss_pred             hHHHHHHHHHHHHHH
Q 023333          235 GPTLSDRQASAYICN  249 (283)
Q Consensus       235 ga~~~g~~aA~~il~  249 (283)
                      +++.+|..+|++|+.
T Consensus       436 ~av~sg~~~a~~i~~  450 (451)
T PRK11883        436 DCIAQAKRAAARLLA  450 (451)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.57  E-value=0.24  Score=48.10  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|+|.|.+|+++|..|.++|++|.+.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            4679999999999999999999999999999754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=91.57  E-value=0.21  Score=44.68  Aligned_cols=33  Identities=36%  Similarity=0.490  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||.|..|.+.|..|.++|++|+++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~   34 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES   34 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998653

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.54  E-value=0.26  Score=47.47  Aligned_cols=32  Identities=31%  Similarity=0.499  Sum_probs=29.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++|+|+|.|.+|.++|..|. +|.+|+|+|..
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~   37 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL   37 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence            478999999999999999998 49999999965

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.50  E-value=0.29  Score=38.69  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +.+|+|+|+|..|...|..|++.|. +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999998 699999754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.49  E-value=0.3  Score=46.56  Aligned_cols=36  Identities=25%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|+|.|..|..+|..|+..|.+|+++|..+.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            467899999999999999999999999999998764

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.42  E-value=0.3  Score=44.45  Aligned_cols=33  Identities=42%  Similarity=0.556  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~   64 (283)
                      +|+|||+|..|.+.|+.|+..|  .++.++|+++.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            7999999999999999999999  47999998654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=91.41  E-value=0.28  Score=40.45  Aligned_cols=35  Identities=29%  Similarity=0.368  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+.++|+|=|..|-.+|.+|+..|.+|+|.|..|.
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            57899999999999999999999999999999874

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.35  E-value=0.2  Score=45.56  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++-+|+|||||..|..+|.-+...|.+|+++|.+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            35789999999999999999999999999999874

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=91.22  E-value=0.48  Score=34.42  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYES   61 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk   61 (283)
                      ..++++|+|.|..|..++..+.+. +.+|.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            357899999999999999999998 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=91.13  E-value=0.32  Score=43.34  Aligned_cols=34  Identities=35%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++++|+|+|.+|.++|+.+++.|.+|+++.+..
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5689999999999999999999999999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.04  E-value=0.27  Score=47.24  Aligned_cols=34  Identities=32%  Similarity=0.487  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|||.|.+|+++|..|.++|++|.+.|..+
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   42 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP   42 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence            3589999999999999999999999999999753

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.97  E-value=0.27  Score=44.85  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|+|+|..|...|+.|++.|.+|+++=+.++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            4799999999999999999999988988877764

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.97  E-value=0.35  Score=36.81  Aligned_cols=33  Identities=30%  Similarity=0.366  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        33 v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      |+|+|.|..|...+..|.+.+.+|+++|+++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~   33 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER   33 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence            689999999999999999977799999998753

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=90.95  E-value=0.35  Score=41.68  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=29.5

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.||| +|..|.+.|..|+++|++|+++.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            3699997 79999999999999999999998765

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=90.87  E-value=0.35  Score=45.46  Aligned_cols=32  Identities=38%  Similarity=0.551  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CcEEEEccC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESR   62 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~   62 (283)
                      ++|+|||+|-.|..+|+.|+++| .+|+|.+|.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            68999999999999999999999 899999998

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=90.81  E-value=0.44  Score=38.23  Aligned_cols=35  Identities=31%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~   64 (283)
                      .++++|||+|..|...|..+.+.| .+|++++++..
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~   54 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE   54 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            478999999999999999999986 78999987643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=90.79  E-value=0.33  Score=49.59  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +-++|.|||+|..|...|+.++.+|++|+++|.++.
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            447899999999999999999999999999998764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=90.77  E-value=0.41  Score=42.94  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~   63 (283)
                      ..++++|+|+|.+|.++++.|+..| .+|+|+.|+.
T Consensus       122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3578999999999999999999999 6899998754

>PLN02494 adenosylhomocysteinase

Probab=90.60  E-value=0.42  Score=46.05  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+.|+|+|.|..|..+|..++..|.+|+++|..+.
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            368999999999999999999999999999998763

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.59  E-value=0.35  Score=45.95  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+|+|||-|.+|+++|..|.++|++|+++|.+..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5799999999999999999999999999997653

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.56  E-value=0.45  Score=43.69  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      ..+|+|||+|..|...|+.++..|+ ++.++|.++.
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            3689999999999999999999996 8999997664

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.56  E-value=0.34  Score=46.39  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .--|+|||.|.+|+++|..|.++|++|++.|..+
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            4569999999999999999999999999999764

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=90.54  E-value=0.44  Score=42.74  Aligned_cols=34  Identities=29%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      ++++|+|+|.++.++++.|.+.|. +|+|+.|...
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~  157 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEK  157 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            589999999999999999999997 5999988653

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.51  E-value=0.44  Score=44.10  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ...+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            45789999999999999999999998 799999864

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=90.48  E-value=0.4  Score=46.01  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..++|+|||+|.||.-.|..|.+.|.+|+++-|.+.-
T Consensus       174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            3589999999999999999999999999999987753

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.48  E-value=0.33  Score=43.68  Aligned_cols=33  Identities=24%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||.|..|...|..|++.|++|+++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            488999999999999999999999999998753

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=90.44  E-value=0.46  Score=42.85  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .++++|+|+|.++.++++.|++.|. +++|+.|..
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  161 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            4789999999999999999999996 689998754

>PRK06223 malate dehydrogenase; Reviewed

Probab=90.41  E-value=0.45  Score=43.16  Aligned_cols=34  Identities=29%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      ++|+|||+|..|...|+.++..|+ +|.++|.++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            689999999999999999998876 8999998553

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.36  E-value=0.52  Score=39.65  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++++|+|| |..|..+|..|.+.|.+|+++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            478999997 999999999999999999999765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=90.34  E-value=0.38  Score=50.55  Aligned_cols=34  Identities=29%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|+|||||..|+-||..+.+.|.+|+++.+.+
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            5789999999999999999999999999988653

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=90.28  E-value=0.2  Score=44.53  Aligned_cols=34  Identities=32%  Similarity=0.582  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI   65 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~   65 (283)
                      +.+|||||++|.+||.+|+..  ..+|+++-..+.+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            468999999999999999875  4578888776654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.12  E-value=0.4  Score=46.46  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|+..|..|+++|  ++|+.+|.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            57999999999999999999885  78999987543

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=90.10  E-value=0.38  Score=45.77  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++.|||.|.+|+++|..|.++|++|++.|..+.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~   33 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN   33 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence            479999999999999999999999999997543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=90.10  E-value=0.37  Score=45.45  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||.|..|+..|..++. |++|+++|.++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            69999999999999987775 999999998654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=90.04  E-value=0.5  Score=42.54  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .++++|||+|.++.++++.|.+.|. +|+|+.|..
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            5789999999999999999999996 699998754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.01  E-value=0.55  Score=41.99  Aligned_cols=37  Identities=16%  Similarity=0.312  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~   65 (283)
                      ...+|+|||+|..|..+|..|++.| .+++|+|.....
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence            4579999999999999999999999 489999976543

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=89.93  E-value=0.52  Score=47.93  Aligned_cols=36  Identities=31%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-hCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~-~~G~~V~vlEk~~~   64 (283)
                      +.++|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            4478999999999999999887 58999999998764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.93  E-value=0.45  Score=45.36  Aligned_cols=35  Identities=34%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|+|-|.+|++++..|++.|++|++.|..+.
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~   40 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT   40 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            46799999999999999999999999999997543

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.82  E-value=0.61  Score=42.70  Aligned_cols=35  Identities=34%  Similarity=0.450  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~   64 (283)
                      ..+|+|||+|..|-++|+.|...|.  ++.++|.+..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            4699999999999999999999987  7999997543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.80  E-value=0.43  Score=45.53  Aligned_cols=34  Identities=26%  Similarity=0.506  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            3799999999999999999999999999998654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.68  E-value=0.65  Score=39.60  Aligned_cols=34  Identities=32%  Similarity=0.375  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      .+.+|+|||+|..|..+|..|++.|. +++++|..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46899999999999999999999997 79999975

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=89.67  E-value=0.57  Score=43.39  Aligned_cols=35  Identities=34%  Similarity=0.439  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .+.+|+|||+|..|-.+|..|++.|. +++++|...
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            46799999999999999999999998 899999853

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=89.65  E-value=0.52  Score=45.72  Aligned_cols=38  Identities=26%  Similarity=0.280  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~G   66 (283)
                      ..++|+|||+|..|+-+|..+.+.|. +|+++|.++...
T Consensus       282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~  320 (485)
T TIGR01317       282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPP  320 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCCh
Confidence            45799999999999999888888875 799999877643

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.61  E-value=0.44  Score=48.52  Aligned_cols=36  Identities=31%  Similarity=0.383  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-hCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~-~~G~~V~vlEk~~~   64 (283)
                      +-++|.|||+|..|...|+.++ ..|++|+++|.++.
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~  344 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ  344 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence            4578999999999999999888 88999999998654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=89.59  E-value=0.36  Score=46.08  Aligned_cols=87  Identities=14%  Similarity=0.115  Sum_probs=56.7

Q ss_pred             CCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCC----CCCCCCCceEEecccccCCCCCcch
Q 023333          159 PLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRT----DQKTPVKNLFLAGSYTKQDYIDSME  234 (283)
Q Consensus       159 ~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp----~~~tpv~~l~laGd~t~~~~~~~~e  234 (283)
                      ..+.+++++.+.+++...++-..  ...+..+.+...+.....||...+.+    ...++.++|+++|||..  . ..|+
T Consensus       369 ~~~~ee~~~~v~~~L~~~~gi~~--~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~--g-~~i~  443 (462)
T TIGR00562       369 DLSENEIINIVLRDLKKVLNINN--EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFE--G-VGIP  443 (462)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCC--CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccC--C-CcHH
Confidence            45678888888888887776321  23444555666665544554322111    11233579999999954  2 3689


Q ss_pred             hHHHHHHHHHHHHHHh
Q 023333          235 GPTLSDRQASAYICNA  250 (283)
Q Consensus       235 ga~~~g~~aA~~il~~  250 (283)
                      +++.+|..+|+.+++.
T Consensus       444 ~~i~sg~~~a~~~~~~  459 (462)
T TIGR00562       444 DCIDQGKAAASDVLTF  459 (462)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=89.50  E-value=0.49  Score=42.78  Aligned_cols=34  Identities=32%  Similarity=0.609  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+|.|||.|..|...|..|.++|++|+++++++.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~   35 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ   35 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3799999999999999999999999999998754

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=89.42  E-value=0.72  Score=37.00  Aligned_cols=33  Identities=42%  Similarity=0.583  Sum_probs=29.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      .+|.|||+ |..|...|+.|...+.  ++.++|.+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            47999999 9999999999999875  699999764

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=89.39  E-value=0.55  Score=46.15  Aligned_cols=33  Identities=30%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .+.++|+|+|.+|.++|+.|++.|.+|+++.+.
T Consensus       379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~  411 (529)
T PLN02520        379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRT  411 (529)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            578999999999999999999999999999875

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=89.39  E-value=0.59  Score=45.09  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|||.|..|..+|..|+..|.+|+++|+.+.
T Consensus       253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~  288 (476)
T PTZ00075        253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI  288 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            468999999999999999999999999999998764

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=89.32  E-value=0.52  Score=42.97  Aligned_cols=35  Identities=31%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      -++|.|||+|..|-..|+.++..|++|+++|.++.
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~   37 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE   37 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence            47899999999999999999998899999998743

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.28  E-value=0.72  Score=36.75  Aligned_cols=32  Identities=22%  Similarity=0.438  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +|+|||+|..|...|..|++.|. +++++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 699999754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=89.11  E-value=0.54  Score=42.28  Aligned_cols=34  Identities=29%  Similarity=0.553  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|...|..+++.|++|+++++++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~   36 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE   36 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998754

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=89.08  E-value=0.68  Score=41.74  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .++++|+|+|.++-++++.|++.|. +++|+.|..
T Consensus       126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~  160 (283)
T COG0169         126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR  160 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            5789999999999999999999995 799998854

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=88.99  E-value=0.49  Score=41.20  Aligned_cols=37  Identities=27%  Similarity=0.259  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.+.|.|||+|..|-..|.-.+..|+.|.+++++...
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            4578999999999999999999999999999987653

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=88.98  E-value=0.68  Score=43.42  Aligned_cols=35  Identities=31%  Similarity=0.291  Sum_probs=31.5

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ...+|.||| .|..|-+.|..|.++|++|+++++.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            347899999 79999999999999999999999854

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.96  E-value=0.52  Score=44.65  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=28.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ++|.|+|.|.+|+++|..|. +|.+|++.|..
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~   31 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK   31 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence            36899999999999999999 99999999954

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=88.95  E-value=0.52  Score=42.65  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||.|..|...|..|.++|++|.++++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
2bxr_A	527	Human Monoamine Oxidase A In Complex With Clorgylin		5e-05
4dsg_A	484	Crystal Structure Of Oxidized Udp-Galactopyranose M		6e-05
2xaf_A	852	Crystal Structure Of Lsd1-Corest In Complex With Pa		9e-05
2z5x_A	513	Crystal Structure Of Human Monoamine Oxidase A With		9e-05
2z5y_A	513	Crystal Structure Of Human Monoamine Oxidase A (G11		9e-05
2x0l_A	734	Crystal Structure Of A Neuro-Specific Splicing Vari		1e-04
2v1d_A	730	Structural Basis Of Lsd1-Corest Selectivity In Hist		1e-04
2dw4_A	660	Crystal Structure Of Human Lsd1 At 2.3 A Resolution		2e-04
2iw5_A	666	Structural Basis For Corest-dependent Demethylation		2e-04
2ejr_A	662	Lsd1-Tranylcypromine Complex Length = 662		2e-04
2h94_A	664	Crystal Structure And Mechanism Of Human Lysine-Spe		2e-04
2hko_A	664	Crystal Structure Of Lsd1 Length = 664		2e-04

>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline, Crystal Form A Length = 527

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 22  EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE 81
           E     G    V +IG G++G+S A  L + G  V + E+R  +GG+  +  ++H ++++
Sbjct: 5   EKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVD 64
Query: 82  MGLHIFFGCYNNLFRLMKKFFMDVYR 107
           +G        N + RL K+  ++ Y+
Sbjct: 65  VGGAYVGPTQNRILRLSKELGIETYK 90

>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase Length = 484

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           K+ IIGAG  G+  AV L + G++   +YE     GG   SF+D++G   ++G H+ F  
Sbjct: 11  KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSH 70
Query: 91  YNNLFRLMKKFFMDVYRQLRQALGFLLR 118
           Y        ++F DV     Q    L R
Sbjct: 71  Y--------QYFDDVMDWAVQGWNVLQR 90

>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 852

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 337
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 338 GGNPMAVVSK 347

>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With Harmine Length = 513

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V +IG G++G+S A  L + G  V + E+R  +GG+  +  ++H +++++G        N
Sbjct: 5   VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 93  NLFRLMKKFFMDVYR 107
            + RL K+  ++ Y+
Sbjct: 65  RILRLSKELGIETYK 79

>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a) With Harmine Length = 513

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V +IG G++G+S A  L + G  V + E+R  +GG+  +  ++H +++++G        N
Sbjct: 5   VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 93  NLFRLMKKFFMDVYR 107
            + RL K+  ++ Y+
Sbjct: 65  RILRLSKELGIETYK 79

>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of Human Histone Lysine Demethylase Lsd1 Length = 734

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 215
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 216 GGNPMAVVSK 225

>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 730

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 215
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 216 GGNPMAVVSK 225

>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution Length = 660

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 167 GGNPMAVVSK 176

>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 666

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 167
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 168 GGNPMAVVSK 177

>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex Length = 662

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 167 GGNPMAVVSK 176

>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific Demethylase-1 Length = 664

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 167 GGNPMAVVSK 176

>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1 Length = 664

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 167 GGNPMAVVSK 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	5e-20
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	8e-17
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	3e-16
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	5e-16
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	7e-15
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	2e-14
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	3e-14
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	6e-14
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	3e-13
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	6e-13
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	2e-12
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	3e-12
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	6e-12
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-11
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	1e-11
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-11
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	2e-11
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	3e-11
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	4e-11
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	8e-11
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	9e-11
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	1e-10
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	2e-10
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-10
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-10
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	1e-09
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	2e-09
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-09
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	2e-09
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	3e-09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	4e-09
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	2e-08
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	5e-08
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	6e-08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	7e-08
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	7e-08
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	2e-07
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	7e-07
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	1e-06
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	2e-06
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	3e-06
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	3e-06
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	6e-06
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	6e-06
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	7e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	9e-06
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	1e-05
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	2e-05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	2e-05
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	2e-05
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	3e-05
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	3e-05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	4e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	4e-05
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	6e-05
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	1e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	1e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	2e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-04
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	4e-04
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	5e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	5e-04
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	6e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	6e-04
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	8e-04

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 88.0 bits (218), Expect = 5e-20
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           ++AIIGAG AG++  + L   G H+  I E    +GGK  S  + HG   EMG  +    
Sbjct: 8   RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS-PNYHGRRYEMGAIMGVPS 66

Query: 91  YNNLFRLMKKF 101
           Y+ +  +M + 
Sbjct: 67  YDTIQEIMDRT 77

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 79.2 bits (194), Expect = 8e-17
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 30  KLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
            + V +IGAG  G+  A  L    G    I +S    GG   + +   G   ++G H+ F
Sbjct: 10  SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIF 69

Query: 89  GCYNNLFRLMKKFF 102
             Y      + +  
Sbjct: 70  SHYKYFDDCLDEAL 83

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           ++  ++GAGL G+     L   GHE+ + E  + IGG+  +     G  +  G       
Sbjct: 1   MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNL-PYKGFQLSTGALHMIPH 59

Query: 91  Y--NNLFRLMKKFFMDVYRQLR 110
                L  L++   +    ++ 
Sbjct: 60  GEDGPLAHLLRI--LGAKVEIV 79

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 76.8 bits (188), Expect = 5e-16
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
             K+ IIGAG  G+  AV L + G++   +YE     GG   SF+D++G   ++G H+ F
Sbjct: 9   TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIF 68

Query: 89  GCYNNLFRLMKKFFMDVYRQLRQAL 113
             Y     +M           R++ 
Sbjct: 69  SHYQYFDDVMDWAVQGWNVLQRESW 93

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 73.2 bits (180), Expect = 7e-15
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
            VAI+GAG +G++ A  L   G  V + E+R  +GG+  +     G  +E+G        
Sbjct: 7   DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT-DTIDGAVLEIGGQWVSPDQ 65

Query: 92  NNLFRLMKKFFMDVYRQLR 110
             L  L+ +  +  + + R
Sbjct: 66  TALISLLDELGLKTFERYR 84

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 15  PKCLFPPEPEHY----------GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64
            +C    + E +                V I+GAG+AG+S A  L   GH+V + E+   
Sbjct: 8   AECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 67

Query: 65  IGGKVGSF-IDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101
            GG+V ++  ++ G +  +G       +  +   ++KF
Sbjct: 68  PGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKF 105

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 71.3 bits (174), Expect = 3e-14
 Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 7   LVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66
           L S  T +         E          I+GAG AG   A  L   G  V I + R  IG
Sbjct: 6   LPSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG 65

Query: 67  GKVGSFIDKHGNHI-EMGLHIFFGCYNNLFRLMKKFFMDVYRQLR 110
           G      D  G  I   G HIF     ++F  + +F      Q R
Sbjct: 66  GNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTEWRPYQHR 110

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 70.6 bits (173), Expect = 6e-14
 Identities = 20/77 (25%), Positives = 41/77 (53%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
            V ++G G++GM+ A  L D G  V + E+R  +GG+  +  ++   ++++G        
Sbjct: 6   DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQ 65

Query: 92  NNLFRLMKKFFMDVYRQ 108
           N + RL K+  ++ Y+ 
Sbjct: 66  NRILRLAKELGLETYKV 82

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS--FIDKHGNHIEMGLHIFFGC 90
             ++G G +G+  A +L + G +V + E    +GG+  S    +  G  +E+G       
Sbjct: 4   AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63

Query: 91  YNN-LFRLMKKFFMDVYRQ 108
           ++  L   + ++ +     
Sbjct: 64  HHPRLAAELDRYGIPTAAA 82

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 67.4 bits (164), Expect = 6e-13
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHI-EMGLHIF 87
             K+ I+GAG +G     +L ++GH+V I + R  IGG      D +    +   G HIF
Sbjct: 3   SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIF 62

Query: 88  FGCYNNLFRLMKKFFMDVYRQLR 110
                 ++  + K    +    R
Sbjct: 63  HTDNETVWNYVNKHAEMMPYVNR 85

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 66.4 bits (161), Expect = 2e-12
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 29  PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIF 87
            K KV IIGAG+AG+  A  L   G  +  + E+R  +GG++ +     G   ++G    
Sbjct: 7   AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWH 66

Query: 88  FGCYNN-LFRLMKKFFMDVYRQ 108
                N LF    +  ++  R 
Sbjct: 67  HDTLTNPLFLEEAQLSLNDGRT 88

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
              I+G+GL G   A EL     +V + E R+ IGG   +   +     + G HIF    
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62

Query: 92  NNLFRLMKKF 101
             ++  +   
Sbjct: 63  KYIWDYVNDL 72

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 64.6 bits (157), Expect = 6e-12
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 28  GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIF 87
                V +IG G  G++   +L   G +  + E+R  IGG+  S  +  G   EMG    
Sbjct: 37  DGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWS-SNIDGYPYEMGGTWV 95

Query: 88  FGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPE--DYYGEGQGS 145
               ++++R + ++ M             +       +      +T     +        
Sbjct: 96  HWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHK 155

Query: 146 LLQCVLTPGNPYMPLPNDEIIRRVARQ 172
                 T G   +P P+D       R+
Sbjct: 156 FTNVDGTNGRTVLPFPHDMFYVPEFRK 182

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH 79
           P           VA++G G++G++ A  L  +G +  + ES + +GG VG+     G  
Sbjct: 11 MPRTTGM-----NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTH-ALAGYL 64

Query: 80 IEMGLHIFFGCYNNLFRLMK 99
          +E G + F         L  
Sbjct: 65 VEQGPNSFLDREPATRALAA 84

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 63.6 bits (154), Expect = 1e-11
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH 79
          P   E       +VA+IGAG++G++ A +L   G  V ++E+    GGK+ S   + G  
Sbjct: 3  PSAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSV-SQDGLI 61

Query: 80 IEMGLHIFFGCYNNLFRLMK 99
           + G +       ++  L+ 
Sbjct: 62 WDEGANTMTESEGDVTFLID 81

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
          +K  +IGAGL G+ +A  L   GHEV+++E     GG+  +     G  +  G       
Sbjct: 1  MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNL-SYKGFQLSSGAFHMLPN 59

Query: 91 -YNNLFRLM 98
                   
Sbjct: 60 GPGGPLACF 68

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           V ++G G AG+ +A EL   G++V + E+R+  GG+V
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV 50

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 62.6 bits (151), Expect = 3e-11
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 29  PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
              KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  K     ++G  +  
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF-RKGNYVADLGAMVVT 164

Query: 89  GCYNN-LFRLMKKFFMDVYR 107
           G   N +  + K+  M++ +
Sbjct: 165 GLGGNPMAVVSKQVNMELAK 184

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 61.9 bits (149), Expect = 4e-11
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 28  GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGGKVGSF---------IDKHG 77
           GP  ++ I+GAG+AG+     L   GH+V I E+ +  +GG++ +F              
Sbjct: 42  GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPA 101

Query: 78  NHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPED 137
            + E G       +     L+ K  +         +       DA               
Sbjct: 102 QYAEAGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVP-PVFYKSFKDGK 160

Query: 138 YYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVA 170
            +  G  S         N      N E +RR  
Sbjct: 161 TWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQ 193

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73
          G   +  + G G AG++ A+ L   G +V ++E  S +    G+ I
Sbjct: 9  GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA-FGAGI 53

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 60.8 bits (147), Expect = 9e-11
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
          ++ I+G G+ G++ A           + + E+   +GGKV ++  + G  IE G   +  
Sbjct: 6  RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATY-REDGFTIERGPDSYVA 64

Query: 90 CYNNLFRLMK 99
            + L  L++
Sbjct: 65 RKHILTDLIE 74

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73
            +K  +IGAG+ G+S AV L   G + D+YE+   I   VG+ I
Sbjct: 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP-VGAAI 65

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGSFIDK-HGNHIEM-GLHI 86
           +  + ++G+G  G++ A  +  Q    V + E R  IGG   S  +   G  +   G H+
Sbjct: 7   RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHL 66

Query: 87  FFGCYNNLFRLMKKF 101
           F      ++  +++F
Sbjct: 67  FHTSNKRVWDYVRQF 81

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 17  CLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH 76
                +P        KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  K 
Sbjct: 266 IYKRIKPLPTK-KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF-RKG 323

Query: 77  GNHIEMGLHIFFGCYNN-LFRLMKKFFMDVYR 107
               ++G  +  G   N +  + K+  M++ +
Sbjct: 324 NYVADLGAMVVTGLGGNPMAVVSKQVNMELAK 355

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
              ++A++G  ++G++ A+ L D G +VD+YE
Sbjct: 3  PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYE 35

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 19 FPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS---FIGGKVGSFIDK 75
                     K ++ I+GAG AG+   + L     +V +Y  R    + G ++ + +  
Sbjct: 11 SSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAH 70

Query: 76 HGNHIE 81
          +   ++
Sbjct: 71 NAVTVQ 76

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 28 GPKLKVAIIGAGLAGMSTAVEL------LDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE 81
            K  V IIG G+ G++ A  +       +   E+ + E+   +GGK+ +   K G  IE
Sbjct: 3  DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTV-KKDGYIIE 61

Query: 82 MGLHIFFGCYNNLFRLMK 99
           G   F     +  +L+K
Sbjct: 62 RGPDSFLERKKSAPQLVK 79

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           +V ++GAG++G+S A  L + G  ++ I E+   IGG++    +  G ++E+G +   G 
Sbjct: 6   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK-TNFAGINVELGANWVEGV 64

Query: 91  YNNLFRLMKKF 101
                  +   
Sbjct: 65  NGGKMNPIWPI 75

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 1  MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
          MGSS             L P            VAIIG G  G++ A  L   G +V +YE
Sbjct: 1  MGSS----HHHHHHSSGLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYE 56

Query: 61 SR-SFIGGKVGSFIDKHGN 78
                    G  +D H  
Sbjct: 57 RDNDREARIFGGTLDLHKG 75

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 55.9 bits (134), Expect = 4e-09
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
           V ++G G++G++ +  L       +V + ES   +GG + S    +G   E+G      
Sbjct: 4  TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRP 63

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG 66
          + + I GAG+ G+S A+ L   G  +V + ES S I 
Sbjct: 5  IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 13  EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           E  +   P +          V I+GAG +G   A  L++ G+ V + ++   IGG +
Sbjct: 373 EYRRGWHPEKFRQTKNKD-SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 9   SGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGG 67
               +      P + +       K+A++GAG A +S A  L   G+ ++ I+E + ++GG
Sbjct: 166 MNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 13  EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           E  +   P           +V ++GAG +G+  A  L  +G++V + E+   +GG+V
Sbjct: 375 EWRRGWHPERIRAKESDA-RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV 430

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 15/38 (39%), Positives = 27/38 (71%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           K  +A++GAG AG++ A+    +GH+V ++++ S IGG
Sbjct: 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG 410

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGG 67
          K+AIIGAG +G+ TA  LL +    +V ++E R   GG
Sbjct: 8  KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62
           + +V ++G+G+ G+S+A+ L  +G+ V I    
Sbjct: 5  SQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 13 EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          + P+ +        G     V ++GAG+AG+        QG  V  +E+ S +GG
Sbjct: 4  QHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          P L   +IGAG+ G+  A  +   G +V   E+   +GG
Sbjct: 8  PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 31 LKVAIIGAGLAGMSTAVELL--DQGHEVDIYESRSFIGG 67
           ++ ++G+G AG  TA  LL       VDIYE +    G
Sbjct: 7  PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 45

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            V +IGAG AG++ A EL  +G+EV +Y+    +GG
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 32 KVAIIGAGLAGMSTAVELLD------QGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLH 85
          ++AI+GAG +GM+             +  E+  +E ++  GG   ++  + G   E G  
Sbjct: 4  RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG-QWNYTWRTGLD-ENGEP 61

Query: 86 IFFGCYNNLF 95
          +    Y  L+
Sbjct: 62 VHSSMYRYLW 71

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 16/89 (17%), Positives = 24/89 (26%), Gaps = 15/89 (16%)

Query: 14  DPKCLFPPEPEHYGGP-------KLKVAIIGAGLAGMSTAVELL--------DQGHEVDI 58
            P       P     P         ++AI+G G  G++   EL           G +V I
Sbjct: 33  HPDSALVSYPVAAAAPLGRLPAGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQI 92

Query: 59  YESRSFIGGKVGSFIDKHGNHIEMGLHIF 87
           YE+           I            + 
Sbjct: 93  YEADPDSFLHDRPGIKAIKVRGLKAGRVS 121

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGH---EVDIYESRSFIGGKVGSFIDKHGN 78
          +V I+GAG+ G   A  L  Q      + +++     GG++ +    H  
Sbjct: 3  QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNP 52

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V IIG+G AG++ AV   D G +V + E     GG
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 163

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            +       ++ V ++GAG +G+     L + G  V + E+   +GG
Sbjct: 6  TVDSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGH-------EVDIYESRSFIGG 67
             +AI+G+G +    A  LL            VD+ E      G
Sbjct: 3  PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 47

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V ++GAG AG + ++     G  V + +   F GG
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG 158

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 23  PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEM 82
            E Y      V ++G GL     +  +   G +V   +   + GG+  S       +   
Sbjct: 4   DEEY-----DVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRF 58

Query: 83  GLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRT 119
            L           R    + +D+  +   A G L++ 
Sbjct: 59  QLLEGPPETMGRGR---DWNVDLIPKFLMANGQLVKM 92

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61
          ++V +IGAG+ G+STA+ + ++ H V     
Sbjct: 1  MRVVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 31 LKVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVGSFIDKHGN 78
          +K+ +IGAG AG+  A +L        +DI E ++     +G  +   G 
Sbjct: 1  MKILVIGAGPAGLVFASQLKQARPLWAIDIVE-KNDEQEVLGWGVVLPGR 49

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           + V +IG G +G+S    L   G    I ++ +  GG
Sbjct: 3  SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V ++G+G AG S A+   D G +V + E    IGG
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGG 67
            +   +IGAG  G+    +L  + G     ++     GG
Sbjct: 7  HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 33  VAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVGSF 72
           + I+GAG  G+S A  L  L     + I E+    GG     
Sbjct: 82  IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG 123

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 33  VAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVG 70
           V I+GAG +G+S A  +       +V I ES    GG   
Sbjct: 68  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          V + G G+AG++ ++E    G +V + E  S  GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 33 VAIIGAGLAGMSTAVEL-LDQGHEVDIYESRSFIGGKVGSF 72
          V ++GAG AG+S A E+  +   +V I E     GG     
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG 82

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
               HY     +  +IG G+ G + A  L  +     ++E    +GG
Sbjct: 12 RAMKRHY-----EAVVIGGGIIGSAIAYYLAKENKNTALFE-SGTMGG 53

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 21  PEPEHYGGPKLKVAIIGAGLAGMSTAVEL---LDQGHEVDIYESRSF-----IGGKVGSF 72
           P   H  G   K+ I+G G AG   A  L   L    ++ + ++            + + 
Sbjct: 16  PRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNL 75

Query: 73  IDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101
                + + +    +    N  +++  KF
Sbjct: 76  QTAFFDFLGIPEDEWMRECNASYKVAIKF 104

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64
                      KVAIIG G AG    + L   GH+V IYE  +F
Sbjct: 18 GSHMTRS-----KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF 57

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70
          V +IGAG AG   A  +   G +V I E + F    +G
Sbjct: 8  VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIG 45

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
           E Y      V ++G G  G++TA ++ ++GH V + E R     + G 
Sbjct: 2  TESY-----DVVVVGGGPVGLATAWQVAERGHRVLVLE-RHTFFNENGG 44

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 22 EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70
           PE +      + +IG G  G + A  +  +GH V + E  +F   ++G
Sbjct: 4  RPEVF-----DLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIG 47

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63
              + +IGAG    + A  L  +G  +    SR+
Sbjct: 9  EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.54
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.46
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.26
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.21
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.2
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.2
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.2
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.19
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.17
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.17
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.14
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.13
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.12
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.11
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.11
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.08
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.07
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.07
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.05
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.05
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.01
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.97
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.97
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.89
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.85
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.85
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.84
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.83
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.81
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.78
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.76
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.74
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.74
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.67
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.64
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.63
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.53
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.48
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.46
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.45
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.42
3dme_A	369	Conserved exported protein; structural genomics, P	98.42
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.42
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.4
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.37
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.37
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.36
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.35
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.35
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.34
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.34
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.33
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.33
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.32
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.32
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.31
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.31
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.3
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.3
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.3
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.3
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.29
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.29
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.29
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.29
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.28
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.28
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.28
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.27
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.27
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.26
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.25
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.25
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.22
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.22
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.22
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.22
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.21
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.21
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.21
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.21
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.21
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.2
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.2
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.2
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.19
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.19
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.19
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.19
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.19
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.18
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.18
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.18
4dna_A	463	Probable glutathione reductase; structural genomic	98.18
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.18
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.18
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.18
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.17
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.17
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.17
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.17
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.16
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.16
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.15
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.15
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.15
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.14
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.12
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.12
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.12
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.12
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.12
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.12
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.11
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.11
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.11
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.11
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.1
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.1
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.1
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.1
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.1
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.1
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.09
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.09
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.08
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.07
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.07
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.07
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.06
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.05
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.05
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.04
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.03
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.03
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.03
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.02
3atr_A	453	Conserved archaeal protein; saturating double bond	98.02
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.02
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.02
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.01
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.01
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.01
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.01
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.01
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.99
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.98
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.98
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.97
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.97
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.97
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.97
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.96
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.96
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.95
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.95
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.94
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.94
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.93
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.93
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.93
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.92
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.91
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.91
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.91
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.89
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.89
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.89
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.89
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.89
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.88
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.88
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.88
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.88
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.88
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.87
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.87
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.86
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.86
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.85
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.85
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.85
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.84
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.84
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.83
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.83
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.83
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.83
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.82
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.82
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.82
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.81
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.81
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.8
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.8
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.79
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.79
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.79
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.79
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.78
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.78
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.78
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.78
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.77
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.76
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.75
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.74
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.72
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.72
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.72
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.72
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.71
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.7
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.69
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.69
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.68
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.66
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.66
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.66
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.65
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.65
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.65
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.64
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.64
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.63
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.63
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.62
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.61
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.61
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.61
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.61
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.6
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.6
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.6
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.58
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.57
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.57
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.56
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.55
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.55
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.55
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.54
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.52
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.52
4dna_A	463	Probable glutathione reductase; structural genomic	97.52
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.51
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.5
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.49
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.49
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.47
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.47
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.46
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.46
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.46
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.46
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.46
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.42
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.42
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.41
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.4
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.35
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.34
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.32
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.31
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.29
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.28
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.26
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.25
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.22
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.19
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.18
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.18
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.17
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.14
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.1
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.1
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.06
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.93
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.91
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.91
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.71
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.58
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.55
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.5
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.5
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	96.5
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.42
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.13
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.09
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.07
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.06
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.04
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.01
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.93
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.87
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	95.73
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.63
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.62
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.5
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.5
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.5
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.49
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	95.48
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.26
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.24
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	95.2
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	95.14
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.1
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.05
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.0
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.0
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	94.99
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	94.96
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	94.93
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.88
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.8
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.76
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.76
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.69
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.65
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.62
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.61
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.57
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.56
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.52
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.51
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.48
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.47
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.43
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.43
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.41
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.37
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.31
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.28
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.24
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.23
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.21
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.14
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.11
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.08
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.05
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.03
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.01
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.95
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	93.94
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.88
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.83
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.72
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.7
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.67
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.65
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.65
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.64
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.55
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.55
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.54
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.52
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.51
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.42
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.38
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.37
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.36
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.35
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.33
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.32
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.23
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.23
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.16
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.14
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.12
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.09
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.06
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.03
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	92.98
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	92.97
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.96
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	92.94
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	92.93
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.92
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.9
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.85
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	92.83
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.65
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	92.64
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	92.62
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.59
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.56
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.55
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.54
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	92.53
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.5
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.35
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.32
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.29
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.29
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.28
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	92.25
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	92.23
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.2
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.15
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.15
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	92.15
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.12
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.12
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.11
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.09
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.08
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	92.06
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.05
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.03
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	91.98
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.93
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	91.92
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	91.84
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	91.81
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.81
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	91.75
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	91.72
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	91.67
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	91.66
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	91.65
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	91.64
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.63
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	91.62
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.62
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.61
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	91.59
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	91.58
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.55
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.53
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	91.45
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	91.42
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	91.38
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.35
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	91.26
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.22
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	91.18
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	91.16
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	91.16
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	91.14
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	91.08
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.08
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	91.07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	91.07
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	91.05
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	91.05
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	91.02
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	91.01
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	90.96
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.95
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	90.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	90.92
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	90.86
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	90.82
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	90.77
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	90.75
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	90.71
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.71
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	90.69
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	90.68
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	90.67
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.65
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.64
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	90.64
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	90.57
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	90.54
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.5
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	90.49
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	90.44
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	90.44
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	90.41
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	90.33
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.32
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	90.03
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	90.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	89.94
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.92
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.8
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	89.72
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	89.7
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	89.67
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	89.65
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	89.62
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	89.51
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	89.47
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	89.41
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	89.4
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	89.39
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.33
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	89.21
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	89.21
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	89.11

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.54  E-value=4.3e-13  Score=113.76  Aligned_cols=71  Identities=28%  Similarity=0.519  Sum_probs=58.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ..||+|||||++||+||+.|+++|++|+||||++.+||++.+.. ..+..+++|.+.+......+.......
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~-~~~~~~d~g~~~~~~~~~~~~~~~~~~   72 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKR-SDAGALDMGAQYFTARDRRFATAVKQW   72 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEE-ETTEEEECSCCCBCCCSHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccc-cCCceeecCccccccCcHHHHHHHHHH
Confidence            47999999999999999999999999999999999999988654 566778888888876665555544433

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.46  E-value=6e-14  Score=133.48  Aligned_cols=74  Identities=24%  Similarity=0.367  Sum_probs=68.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ..++||+|||||++||+||++|++ .|++|+|||+++++||++.++...+|+.++.|+|+|++.+++++++++++
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~   82 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEA   82 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHh
Confidence            346899999999999999999997 59999999999999999998776789999999999999999999998876

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.26  E-value=1e-10  Score=105.88  Aligned_cols=59  Identities=19%  Similarity=0.272  Sum_probs=48.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCccccccceeecC--CCceeeccceeeec
Q 023333           31 LKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFIGGKVGSFIDK--HGNHIEMGLHIFFG   89 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~---~G~~V~vlEk~~~~GG~~~~~~~~--~g~~~~~g~~~~~~   89 (283)
                      +||+|||||++||++|+.|++   .|++|+||||++.+||++.+....  .+..++.|..++..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~   65 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITC   65 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEc
Confidence            589999999999999999999   999999999999999998865421  23346677666543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.21  E-value=1.7e-11  Score=117.44  Aligned_cols=70  Identities=31%  Similarity=0.511  Sum_probs=59.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCccccccceeecCCCceeeccceeeecC-ChHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC-YNNLFRLM   98 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~   98 (283)
                      ..+||+|||||++||+||+.|+++| ++|+|||+++++||++.+.....|..+++|++++++. .+.++..+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~   78 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEE   78 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHH
Confidence            3579999999999999999999999 9999999999999999887644688999999999865 34444443

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.20  E-value=2.9e-11  Score=112.44  Aligned_cols=72  Identities=33%  Similarity=0.531  Sum_probs=63.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +.+||+|||||++||+||+.|+++| ++|+|||+++++||++.+.. ..|..++.|++++...++++.++++++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~-~~G~~~d~G~~~~~~~~~~~~~l~~~~   77 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPN-YHGRRYEMGAIMGVPSYDTIQEIMDRT   77 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCE-ETTEECCSSCCCBCTTCHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccC-CCCcccccCceeecCCcHHHHHHHHHh
Confidence            4589999999999999999999999 99999999999999998875 467889999999877777777766654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.20  E-value=2.5e-11  Score=115.30  Aligned_cols=69  Identities=26%  Similarity=0.379  Sum_probs=63.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~  100 (283)
                      +||+|||||++||+||+.|+++|++|+|||+++++||++.+.. .+|..++.|++++++.++++++++++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~l~~  108 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSN-IDGYPYEMGGTWVHWHQSHVWREITR  108 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEE-ETTEEEECSCCCBCTTSHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecc-cCCeeecCCCeEecCccHHHHHHHHH
Confidence            7999999999999999999999999999999999999998876 57888999999999888888877754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.20  E-value=1.2e-11  Score=117.57  Aligned_cols=58  Identities=26%  Similarity=0.433  Sum_probs=45.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeee
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF   88 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~   88 (283)
                      .++|+|||||++||+||++|+++|++|+|||+++++||++.++. .+|+.+|.|++++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~-~~G~~~D~G~~~~~   58 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYE-DQGFTFDAGPTVIT   58 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEE-ETTEEEECSCCCBS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEE-eCCEEEecCceeec
Confidence            37899999999999999999999999999999999999999876 57888888877654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.19  E-value=3.2e-11  Score=115.51  Aligned_cols=72  Identities=28%  Similarity=0.477  Sum_probs=63.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .+||+|||||++||+||+.|+++|++|+|||+++++||++.+.....|..++.|+++++..++.+.++++++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l   75 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKEL   75 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHT
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHc
Confidence            479999999999999999999999999999999999999988764347889999999988777777777664

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.17  E-value=3.8e-11  Score=113.33  Aligned_cols=72  Identities=26%  Similarity=0.456  Sum_probs=63.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ..+||+|||||++||+||+.|+++|++|+|||+++++||++.+.. ..|..++.|++++...++.+.++++++
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~   86 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRALAAAL   86 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeec-cCCeeeecChhhhhhhhHHHHHHHHHc
Confidence            368999999999999999999999999999999999999999876 468889999999998777777777665

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.17  E-value=2.2e-11  Score=114.24  Aligned_cols=71  Identities=30%  Similarity=0.450  Sum_probs=64.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC------CcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG------HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G------~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .+||+|||||++||+||++|+++|      ++|+|||+++++||++.+.. .+|..++.|++++...++++.++++++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l   81 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVK-KDGYIIERGPDSFLERKKSAPQLVKDL   81 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEEC-CTTCCEESSCCCEETTCTHHHHHHHHT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEec-cCCEEeccChhhhhhCCHHHHHHHHHc
Confidence            479999999999999999999999      99999999999999999876 478889999999998888888887766

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.14  E-value=6.5e-11  Score=110.06  Aligned_cols=72  Identities=24%  Similarity=0.514  Sum_probs=63.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCccccccceeecC-CCcee-eccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGSFIDK-HGNHI-EMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~~GG~~~~~~~~-~g~~~-~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .+||+|||||++||+||+.|+++ |++|+|||+++++||++.+.... .|..+ +.|+++++..+++++++++++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~   81 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQF   81 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHh
Confidence            58999999999999999999999 99999999999999999987643 57666 599999998888888877654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.13  E-value=6.6e-11  Score=111.60  Aligned_cols=72  Identities=21%  Similarity=0.312  Sum_probs=61.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCccccccceeecCCCceeeccceeeecC---ChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC---YNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~---~~~~~~~~~~~  101 (283)
                      ++||+|||||++||+||++|+++|+  +|+|||+++++||++.+....+|..++.|++.+...   +..+.++++++
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~l   78 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSEL   78 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHT
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHc
Confidence            3699999999999999999999999  999999999999999887656788999999998654   44555655554

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.12  E-value=8.1e-11  Score=111.91  Aligned_cols=72  Identities=26%  Similarity=0.434  Sum_probs=64.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ..+||+|||||++||+||+.|+++|++|+|||+++++||++.+.. ..|..++.|+++++..++++.++++++
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~l   83 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSL   83 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCeEEecCCcccccCcHHHHHHHHHc
Confidence            358999999999999999999999999999999999999998876 477889999999988777888777765

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.11  E-value=1.5e-10  Score=107.03  Aligned_cols=73  Identities=29%  Similarity=0.488  Sum_probs=61.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Cccccccceeec---------CCCceeeccceeeecCChHHHHH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGGKVGSFID---------KHGNHIEMGLHIFFGCYNNLFRL   97 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~-~~~GG~~~~~~~---------~~g~~~~~g~~~~~~~~~~~~~~   97 (283)
                      ...++|+|||||++||+||+.|+++|++|+|||++ +++||++.+...         ..+..++.|++++...+..+.++
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~  121 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLAL  121 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHH
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHH
Confidence            34689999999999999999999999999999999 999999987753         24677899999987776666655


Q ss_pred             HHH
Q 023333           98 MKK  100 (283)
Q Consensus        98 ~~~  100 (283)
                      +++
T Consensus       122 ~~~  124 (376)
T 2e1m_A          122 IDK  124 (376)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.11  E-value=9.9e-11  Score=108.90  Aligned_cols=73  Identities=32%  Similarity=0.499  Sum_probs=64.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCce-eeccceeeecCChHHHHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH-IEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~-~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++++||++.+..+..|.. .+.|+|.++..+..++++++++
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~  101 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRF  101 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHh
Confidence            468999999999999999999999999999999999999998876556665 4899999998888888887764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.08  E-value=2.1e-10  Score=106.71  Aligned_cols=71  Identities=21%  Similarity=0.392  Sum_probs=59.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecC--CCceeeccceeeecC-ChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK--HGNHIEMGLHIFFGC-YNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~--~g~~~~~g~~~~~~~-~~~~~~~~~~~  101 (283)
                      +||+|||||++||+||+.|+++|++|+|||+++++||++.+....  .|..++.|+++++.. .+++.+.++++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~   75 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRY   75 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHh
Confidence            699999999999999999999999999999999999998865422  277888999888777 66666665554

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.07  E-value=2e-10  Score=108.39  Aligned_cols=72  Identities=22%  Similarity=0.387  Sum_probs=65.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +.+||+|||||++||+||++|+++|  ++|+|||+++++||++.+.. ..|..++.|++.+...+.++.++++++
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~l~~~l   76 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKHILTDLIEAI   76 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEEC-STTCCEESSCCCEETTSTHHHHHHHHT
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEe-eCCEEEecCchhhhcccHHHHHHHHHc
Confidence            3579999999999999999999999  99999999999999998876 478889999999998888888888775

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.07  E-value=3.5e-10  Score=107.72  Aligned_cols=73  Identities=33%  Similarity=0.544  Sum_probs=65.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ..++|+|||||++||+||++|+++| .+|+|||+++++||++.+....+|..++.|++++...++.+.++++++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~   81 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWA   81 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHH
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHH
Confidence            3589999999999999999999998 799999999999999998655788899999999988888888887774

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.06  E-value=2.2e-10  Score=107.34  Aligned_cols=70  Identities=29%  Similarity=0.415  Sum_probs=60.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~  100 (283)
                      .+||+|||||++||+||+.|+++|++|+|||+++++||++.+... .|..++.|++++......+.+++++
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~   74 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI-DGAVLEIGGQWVSPDQTALISLLDE   74 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEE-TTEEEECSCCCBCTTCHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceecccc-CCceeccCCeEecCccHHHHHHHHH
Confidence            479999999999999999999999999999999999999987764 6778899998887766666666655

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.05  E-value=2.6e-10  Score=105.51  Aligned_cols=72  Identities=29%  Similarity=0.506  Sum_probs=63.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecC-CCcee-eccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HGNHI-EMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~-~g~~~-~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .++|+|||||++||++|+.|+++|++|+|+|+++++||++.+.... .|..+ +.|.++++..+++++++++++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l   76 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKH   76 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999886643 56665 899999998888888877654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.05  E-value=2e-10  Score=106.53  Aligned_cols=69  Identities=29%  Similarity=0.516  Sum_probs=57.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeec--CChHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG--CYNNLFRLMKK  100 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~  100 (283)
                      +||+|||||++||+||++|+++|++|+|||+++.+||++.++. .+|..++.|++.+..  .+..+.+++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~~d~G~~~~~~~~~~~~~~~l~~~   71 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSGAFHMLPNGPGGPLACFLKE   71 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEE-ETTEEEESSSCSCBTTGGGSHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeec-cCCcEEcCCCceEecCCCccHHHHHHHH
Confidence            5899999999999999999999999999999999999998865 678889999766543  33455555554

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.05  E-value=3.5e-10  Score=105.18  Aligned_cols=70  Identities=24%  Similarity=0.463  Sum_probs=58.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeec--CChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG--CYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~~  101 (283)
                      +||+|||||++||+||++|+++|++|+|||+++++||++.++. .+|..++.|++.+..  ....+.++++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~l   72 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMIPHGEDGPLAHLLRIL   72 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEE-ETTEEEESSSCSEETTTTSSHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEec-cCCEEEecCCeEEEccCCChHHHHHHHHh
Confidence            4899999999999999999999999999999999999998875 578888998766643  344555555554

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.05  E-value=4.7e-10  Score=106.28  Aligned_cols=71  Identities=24%  Similarity=0.355  Sum_probs=55.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecC----------------CCceeeccceeeecCCh
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK----------------HGNHIEMGLHIFFGCYN   92 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~----------------~g~~~~~g~~~~~~~~~   92 (283)
                      ..+||+|||||++||+||+.|+++|++|+|||+++++||++.+....                .+..++.|++.+...+ 
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-   88 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSH-   88 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETTS-
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccHH-
Confidence            35799999999999999999999999999999999999998776532                4555666665554433 


Q ss_pred             HHHHHHHH
Q 023333           93 NLFRLMKK  100 (283)
Q Consensus        93 ~~~~~~~~  100 (283)
                      .+.+++++
T Consensus        89 ~~~~~~~~   96 (489)
T 2jae_A           89 ITLDYCRE   96 (489)
T ss_dssp             THHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.01  E-value=3.7e-10  Score=103.85  Aligned_cols=70  Identities=29%  Similarity=0.409  Sum_probs=60.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceee-ccceeeecCChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE-MGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~-~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +||+|||||++||++|++|+++|++|+|+|+++++||++.+.. ..|..++ .|+++++..+++++++++++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~~G~~~~~~~~~~~~~~~~~l   72 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWDYVNDL   72 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHHHHHTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeec-cCCceeeccCCceecCCCHHHHHHHHHh
Confidence            6899999999999999999999999999999999999998866 3566774 89999998887777766543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.97  E-value=9.7e-10  Score=104.36  Aligned_cols=72  Identities=29%  Similarity=0.450  Sum_probs=60.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeec-CCCceeeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .++|+|||||++||+||+.|+++|++|+|||+++++||++.+... ..+...+.|++++......+.++++++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  105 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKF  105 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHh
Confidence            579999999999999999999999999999999999999987654 346678899988877666666666543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.97  E-value=3.8e-09  Score=98.85  Aligned_cols=51  Identities=33%  Similarity=0.354  Sum_probs=42.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCce
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH   79 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~   79 (283)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++.+|+++.....+.++.
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~   76 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNF   76 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceec
Confidence            358999999999999999999999999999999999998876554444443

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.85  E-value=4.6e-09  Score=99.25  Aligned_cols=59  Identities=29%  Similarity=0.473  Sum_probs=52.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCccccccceeecCCCceeeccceeee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF   88 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~   88 (283)
                      ..++|+|||||++||++|+.|+++|+ +|+|+|+++++||++.+.. ..|..++.|+++++
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~-~~~~~~d~g~~~~~   62 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVE   62 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecc-cCCcEEeeCCeEEe
Confidence            35799999999999999999999998 8999999999999998765 46778899998887

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.85  E-value=7.5e-09  Score=102.23  Aligned_cols=62  Identities=32%  Similarity=0.550  Sum_probs=54.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC   90 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~   90 (283)
                      ...++|+|||+|++||+||+.|+++|++|+|||+.+++||++.++. ..+...+.|++++++.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~-~~~~~~~~G~~~~~~~  166 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGL  166 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccc-ccCchhhcCcEEEeCC
Confidence            4468999999999999999999999999999999999999998876 4566788888877654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.84  E-value=5.7e-08  Score=83.27  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||||++|+.+|+.|++.|.+|+|+|++....|
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G   40 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM   40 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC
Confidence            58999999999999999999999999999999854333

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.83  E-value=8.6e-09  Score=104.29  Aligned_cols=62  Identities=32%  Similarity=0.550  Sum_probs=54.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC   90 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~   90 (283)
                      ...++|+|||+|++||+||+.|+++|++|+|||+.+++||++.++. ..+...++|++++++.
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~~~~~~~G~~~~~~~  337 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGL  337 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEE-ETTEEEESSCCEECCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeec-ccccchhcCceEecCC
Confidence            3468999999999999999999999999999999999999998876 3566778888877654

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.81  E-value=3.5e-09  Score=104.94  Aligned_cols=72  Identities=22%  Similarity=0.331  Sum_probs=62.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--------CcEEEEccCC-cc----------------ccccceeecC------CCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--------HEVDIYESRS-FI----------------GGKVGSFIDK------HGN   78 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--------~~V~vlEk~~-~~----------------GG~~~~~~~~------~g~   78 (283)
                      .++|+|||||++||+||+.|+++|        ++|+|||+++ ++                ||++.+....      ++.
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~  135 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDT  135 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCc
Confidence            478999999999999999999998        9999999999 99                9999877542      456


Q ss_pred             eeeccceeeecCChHHHHHHHHH
Q 023333           79 HIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .+++|++++...+..++++++++
T Consensus       136 ~~e~G~~~~~~~~~~~~~~~~~l  158 (721)
T 3ayj_A          136 IYEVGAMRFPEIAGLTWHYASAA  158 (721)
T ss_dssp             EEECSCCCEETTCHHHHHHHHHH
T ss_pred             EEecCCEEecCccHHHHHHHHHh
Confidence            78999999998887777776664

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.78  E-value=3.7e-08  Score=91.56  Aligned_cols=48  Identities=29%  Similarity=0.341  Sum_probs=41.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHG   77 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g   77 (283)
                      .+||+|||||++|++||+.|+++|++|+|+|+++.+|+++.....+.+
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~c   51 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFC   51 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeE
Confidence            479999999999999999999999999999999999877654433333

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.76  E-value=1.3e-08  Score=102.03  Aligned_cols=65  Identities=37%  Similarity=0.534  Sum_probs=57.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNN   93 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~   93 (283)
                      ..+||+|||||++||++|+.|++.|++|+|+|+.+++||++.+.....|..++.|++++++...+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~n  399 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINN  399 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccC
Confidence            35899999999999999999999999999999999999999987766788899999988775433

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.74  E-value=2.3e-08  Score=93.76  Aligned_cols=71  Identities=14%  Similarity=0.268  Sum_probs=55.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceee-cC-------------------CCceeeccceeee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI-DK-------------------HGNHIEMGLHIFF   88 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~-~~-------------------~g~~~~~g~~~~~   88 (283)
                      ..+||+|||+|++||++|+.|+++|++|+|+|+++.+||++.++. ..                   .++.+++|++++.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~   84 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLM   84 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceee
Confidence            358999999999999999999999999999999999999998775 10                   3345677777765


Q ss_pred             cCChHHHHHHHH
Q 023333           89 GCYNNLFRLMKK  100 (283)
Q Consensus        89 ~~~~~~~~~~~~  100 (283)
                      .. ..+.+++++
T Consensus        85 ~~-~~l~~ll~~   95 (433)
T 1d5t_A           85 AN-GQLVKMLLY   95 (433)
T ss_dssp             TT-SHHHHHHHH
T ss_pred             cc-chHHHHHHH
Confidence            43 344444443

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.74  E-value=1e-08  Score=96.61  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=42.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI   73 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~   73 (283)
                      ..+||+|||+|++||+||+.|+++|++|+|||+++++||++.++.
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   54 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVT   54 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccee
Confidence            358999999999999999999999999999999999999998753

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.67  E-value=1.6e-06  Score=70.66  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~   35 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS   35 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            6899999999999999999999999999999874

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.64  E-value=1.5e-08  Score=92.19  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ++||+|||||++||++|+.|+++|++|+||||.+.+|.
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~   41 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS   41 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            58999999999999999999999999999999887764

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.63  E-value=2e-08  Score=90.33  Aligned_cols=42  Identities=33%  Similarity=0.336  Sum_probs=38.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh--CCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~--~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++||+||++|++  .|++|+||||.+.+||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            4699999999999999999975  59999999999999998763

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.53  E-value=9.3e-08  Score=90.73  Aligned_cols=71  Identities=20%  Similarity=0.335  Sum_probs=55.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecC-------------------CCceeeccceeeec
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-------------------HGNHIEMGLHIFFG   89 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~-------------------~g~~~~~g~~~~~~   89 (283)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+++.+||++.++...                   +++.++++++.+. 
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~-   97 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFIL-   97 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEE-
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEee-
Confidence            35899999999999999999999999999999999999998876321                   2345777766663 


Q ss_pred             CChHHHHHHHH
Q 023333           90 CYNNLFRLMKK  100 (283)
Q Consensus        90 ~~~~~~~~~~~  100 (283)
                      .+.++.+++.+
T Consensus        98 ~~g~L~~lL~~  108 (475)
T 3p1w_A           98 VGGNLVKILKK  108 (475)
T ss_dssp             TTSHHHHHHHH
T ss_pred             cCcHHHHHHHH
Confidence            44555555443

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.48  E-value=1.2e-07  Score=84.34  Aligned_cols=41  Identities=34%  Similarity=0.502  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .|||+|||||++||+||++|++.|++|+|+|+. .+||.+..
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~   46 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMAN   46 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeec
Confidence            589999999999999999999999999999985 57887653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.46  E-value=1.1e-07  Score=84.86  Aligned_cols=43  Identities=30%  Similarity=0.383  Sum_probs=38.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC----Cccccccce
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR----SFIGGKVGS   71 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~----~~~GG~~~~   71 (283)
                      ..+||+|||||++||++|+.|+++|++|+|+|+.    ..+||.+..
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            4589999999999999999999999999999994    478887664

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.45  E-value=1.4e-07  Score=83.70  Aligned_cols=41  Identities=22%  Similarity=0.435  Sum_probs=35.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      +..+||+|||||++||+||++|+++|++|+|+|+.. .||.+
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~   44 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRV   44 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGG
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCee
Confidence            456999999999999999999999999999999975 56654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.42  E-value=1.9e-07  Score=82.65  Aligned_cols=35  Identities=29%  Similarity=0.272  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++||+||++|+++|++|+|+|+...
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            58999999999999999999999999999999763

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.42  E-value=2e-07  Score=83.91  Aligned_cols=40  Identities=35%  Similarity=0.529  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+||.+.+|+..
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~   43 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGT   43 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCST
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Confidence            5799999999999999999999999999999998776543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.42  E-value=2e-07  Score=82.46  Aligned_cols=40  Identities=23%  Similarity=0.263  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            579999999999999999999999999999998  8888663

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.40  E-value=2.1e-07  Score=87.50  Aligned_cols=43  Identities=23%  Similarity=0.437  Sum_probs=39.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      .+||+|||||++||+||+.|+++|.+|+|+||++.+|+++...
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~s   68 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAIS   68 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEe
Confidence            5899999999999999999999999999999999988775433

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.37  E-value=3.2e-07  Score=84.52  Aligned_cols=40  Identities=33%  Similarity=0.429  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ++.+||+|||||++||++|+.|+++|++|+|||+.+.++.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   63 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREA   63 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccc
Confidence            3457999999999999999999999999999999876543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.37  E-value=3.4e-07  Score=89.27  Aligned_cols=40  Identities=43%  Similarity=0.607  Sum_probs=35.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++.+||+|||||++|+++|+.|+++|++|+|+|+.+..+
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~   59 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR   59 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC
Confidence            3456899999999999999999999999999999986543

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.36  E-value=3e-07  Score=83.67  Aligned_cols=40  Identities=23%  Similarity=0.423  Sum_probs=35.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            3468999999999999999999999999999999865543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.35  E-value=2.9e-07  Score=82.40  Aligned_cols=41  Identities=27%  Similarity=0.404  Sum_probs=38.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+.+||.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~   43 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ   43 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            47999999999999999999999999999999999998865

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.35  E-value=4.4e-07  Score=84.47  Aligned_cols=41  Identities=27%  Similarity=0.359  Sum_probs=37.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG~~   69 (283)
                      ..+||+|||||++||++|++|+++|+ +|+|||+.+..||..
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~~   46 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAIS   46 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCc
Confidence            35899999999999999999999999 999999998877653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.34  E-value=9.9e-07  Score=81.41  Aligned_cols=39  Identities=28%  Similarity=0.364  Sum_probs=35.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .++|+|||+|.+|+.+|..|++.|.+|+|+|+.+.+..+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            468999999999999999999999999999999876543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.34  E-value=3.6e-07  Score=84.32  Aligned_cols=39  Identities=38%  Similarity=0.640  Sum_probs=34.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+.+||+|||||++||++|+.|+++|++|+|||+.+.+.
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~   59 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK   59 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            346899999999999999999999999999999988653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.33  E-value=2.6e-07  Score=86.34  Aligned_cols=55  Identities=31%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333            1 MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      |+|+-+...++.++.       . ......++|+|||||++||++|+.|+++|++|+|+|+.+
T Consensus         1 ~~~~~~~~~~~~~~~-------~-~~~~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A            1 MGSSHHHHHHSSGLV-------P-RGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             ------------------------------CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCccccccccceee-------c-ccCcCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            555555555554441       1 111234799999999999999999999999999999986

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.33  E-value=3.4e-07  Score=86.90  Aligned_cols=43  Identities=28%  Similarity=0.400  Sum_probs=38.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +..+||+|||||++|++||+.|++.|++|+|+|+.+.+||.+.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~   65 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCL   65 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            3458999999999999999999999999999999999999754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.32  E-value=3.4e-07  Score=81.36  Aligned_cols=41  Identities=32%  Similarity=0.386  Sum_probs=38.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+.+||.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            47999999999999999999999999999999999999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.32  E-value=6.8e-07  Score=84.43  Aligned_cols=42  Identities=40%  Similarity=0.623  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..++|+|||||++||+||+.|+++|++|+|||+.+.+||.+.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            468999999999999999999999999999999999998754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.31  E-value=3.3e-07  Score=87.57  Aligned_cols=41  Identities=29%  Similarity=0.489  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|++||+||+.|+++|++|+|+||.+.+||...
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            57999999999999999999999999999999999998754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.31  E-value=4.2e-07  Score=82.38  Aligned_cols=39  Identities=31%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      +++||+|||||++||++|++|+ +|++|+|||+++.+|+.
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g~~   46 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPGYH   46 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTTSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCcccc
Confidence            3689999999999999999999 69999999999877744

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.30  E-value=8.7e-07  Score=87.80  Aligned_cols=44  Identities=30%  Similarity=0.468  Sum_probs=40.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ...++|+|||||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            34689999999999999999999999999999999999998653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.30  E-value=5e-07  Score=80.33  Aligned_cols=41  Identities=37%  Similarity=0.576  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+ ..+||.+..
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            57999999999999999999999999999999 467887653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.30  E-value=4.6e-07  Score=79.84  Aligned_cols=42  Identities=36%  Similarity=0.556  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEE-EccCCccccccce
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDI-YESRSFIGGKVGS   71 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~v-lEk~~~~GG~~~~   71 (283)
                      ..+||+|||||++||+||+.|+++|++|+| +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            358999999999999999999999999999 999 678888653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.29  E-value=4.7e-07  Score=81.98  Aligned_cols=42  Identities=26%  Similarity=0.355  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++||++|+.|+++|++|+|+|+.+.+||.+.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            358999999999999999999999999999999999998764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.29  E-value=5.8e-07  Score=88.79  Aligned_cols=40  Identities=30%  Similarity=0.418  Sum_probs=36.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+++.+|+.
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~g  310 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALG  310 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCccccc
Confidence            3589999999999999999999999999999998877643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.29  E-value=6.6e-07  Score=83.86  Aligned_cols=43  Identities=40%  Similarity=0.540  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCccccccce
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIGGKVGS   71 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~~GG~~~~   71 (283)
                      +.++|+|||||++||++|..|++.|.  +|+|||+.+.+||.+..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            35899999999999999999999999  99999999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.29  E-value=5.6e-07  Score=82.22  Aligned_cols=36  Identities=42%  Similarity=0.610  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.+|+|||||++||++|+.|+++|++|+||||.+.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            368999999999999999999999999999998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.28  E-value=4.7e-07  Score=85.88  Aligned_cols=40  Identities=30%  Similarity=0.386  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||+.|+++|++|+|+|+ +.+||.+.
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   65 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCV   65 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCcee
Confidence            47999999999999999999999999999999 67888754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.28  E-value=4.6e-07  Score=80.95  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+++.+||.+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   45 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT   45 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            47999999999999999999999999999999999998764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.28  E-value=6.3e-07  Score=86.82  Aligned_cols=41  Identities=34%  Similarity=0.601  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||+.|+++|++|+||||.+.+||+..
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~  166 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK  166 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence            57999999999999999999999999999999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.27  E-value=1.6e-05  Score=72.83  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++++|||+|.+|+.+|..+++.|.+|+++|+.+.+..
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  182 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP  182 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh
Confidence            47899999999999999999999999999999887543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.27  E-value=7.9e-07  Score=88.06  Aligned_cols=40  Identities=28%  Similarity=0.341  Sum_probs=36.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+.+|+.
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~g  302 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQG  302 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTTCS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCccccc
Confidence            3589999999999999999999999999999998877654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.26  E-value=9.1e-06  Score=75.30  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+.+|..+++.|.+|+++|+.+.+.
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  179 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL  179 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence            5789999999999999999999999999999987754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.25  E-value=7.8e-07  Score=78.51  Aligned_cols=40  Identities=35%  Similarity=0.508  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||||++||++|+.|+++ |.+|+|+|+++.+||..
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            46999999999999999999997 99999999999988754

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.25  E-value=6.8e-07  Score=82.00  Aligned_cols=37  Identities=30%  Similarity=0.636  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+..+
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            4799999999999999999999999999999987654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.22  E-value=1.4e-06  Score=79.70  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CC-CcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLD-QG-HEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~-~G-~~V~vlEk~~~~   65 (283)
                      ..+||+|||||++|+++|+.|++ +| ++|+|+|+.+..
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~   58 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA   58 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            35899999999999999999999 99 999999999843

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.22  E-value=9.4e-07  Score=78.74  Aligned_cols=41  Identities=29%  Similarity=0.395  Sum_probs=37.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++||++|+.|++.|++|+|+|+. .+||.+..
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            579999999999999999999999999999998 68887653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.22  E-value=1.3e-05  Score=74.17  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+..
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  182 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS  182 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc
Confidence            57899999999999999999999999999999887543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.22  E-value=1.1e-06  Score=79.96  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+..+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            5799999999999999999999999999999987655

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.21  E-value=1e-05  Score=71.65  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            478999999999999999999999999999998764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.21  E-value=9.7e-07  Score=84.98  Aligned_cols=41  Identities=27%  Similarity=0.502  Sum_probs=38.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            57999999999999999999999999999999999999764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.21  E-value=7.6e-07  Score=86.16  Aligned_cols=41  Identities=27%  Similarity=0.485  Sum_probs=38.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|++||+||+.|+++|++|+||||.+.+||+..
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~  161 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM  161 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            47999999999999999999999999999999999988754

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.21  E-value=8.4e-07  Score=80.41  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~   39 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQ   39 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            47999999999999999999999999999999877644

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.21  E-value=1.2e-06  Score=80.11  Aligned_cols=39  Identities=26%  Similarity=0.491  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      +.+||+|||||++||++|+.|+++|++|+|+|+.+.+++
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            458999999999999999999999999999999987753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.20  E-value=1.7e-05  Score=73.44  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++|+.+.+..
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~  189 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA  189 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh
Confidence            57899999999999999999999999999999887643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.20  E-value=1.4e-06  Score=83.47  Aligned_cols=43  Identities=26%  Similarity=0.344  Sum_probs=39.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...+||+|||||++|++||++|++.|++|+|+|+.+.+||.+.
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            3468999999999999999999999999999999988888754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.20  E-value=1.2e-06  Score=82.69  Aligned_cols=40  Identities=30%  Similarity=0.412  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||||++|++||++|++.|++|+|+|+++.+||+.
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            5899999999999999999999999999999998666553

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.19  E-value=1.4e-06  Score=78.90  Aligned_cols=37  Identities=27%  Similarity=0.443  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~   41 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCC
Confidence            3589999999999999999999999999999998643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.19  E-value=8.6e-07  Score=85.64  Aligned_cols=42  Identities=31%  Similarity=0.485  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~   61 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWY   61 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            357999999999999999999999999999999999999765

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.19  E-value=1.3e-06  Score=84.39  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=37.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..+||+|||||++||+||+.|++.|++|+|+|+.+.++++.
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~  146 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT  146 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccc
Confidence            35899999999999999999999999999999998875543

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.19  E-value=1.1e-06  Score=86.21  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||+|++|+++|+.|+++|++|+|+|+.+..||..
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            5799999999999999999999999999999999888744

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.19  E-value=9.5e-07  Score=83.33  Aligned_cols=41  Identities=32%  Similarity=0.416  Sum_probs=38.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||+.|++.|++|+|+|+++.+||.+.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~   44 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL   44 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence            47999999999999999999999999999999999999865

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.18  E-value=1.8e-06  Score=86.17  Aligned_cols=44  Identities=32%  Similarity=0.493  Sum_probs=40.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      ...++|+|||||++||+||+.|+++|++|+|+|+.+.+||.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            34689999999999999999999999999999999999998753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.18  E-value=1.1e-06  Score=82.87  Aligned_cols=41  Identities=24%  Similarity=0.431  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||++|++.|++|+|+|+.+.+||.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            47999999999999999999999999999999999998754

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.18  E-value=1.2e-06  Score=80.77  Aligned_cols=35  Identities=40%  Similarity=0.582  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~   39 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF   39 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            47999999999999999999999999999999873

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.18  E-value=1e-06  Score=82.99  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||+.|+++|++|+|+|+ +.+||.+.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            58999999999999999999999999999999 77898654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.18  E-value=1.7e-06  Score=78.68  Aligned_cols=37  Identities=41%  Similarity=0.722  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.. +|+
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~-~~~   41 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF-IGS   41 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-TTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC-CCC
Confidence            5799999999999999999999999999999985 443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.18  E-value=3e-06  Score=83.65  Aligned_cols=43  Identities=35%  Similarity=0.663  Sum_probs=39.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...++|+|||||++|++||..|+++|++|+|+|+.+.+||.+.
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            3468999999999999999999999999999999999998764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.18  E-value=1.3e-06  Score=79.49  Aligned_cols=41  Identities=29%  Similarity=0.385  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||++|+.|+++  |++|+|+|+.+.+||...
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            47999999999999999999997  999999999998886543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.17  E-value=1.5e-06  Score=83.21  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=37.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--------ccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--------FIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~--------~~GG~~~   70 (283)
                      ..+||+|||||++|++||.+|++.|++|+|+|+++        .+||.+.
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   80 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCV   80 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccC
Confidence            35899999999999999999999999999999965        6777654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.17  E-value=1.4e-06  Score=82.00  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=38.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|+++|++|++.|++|+|+|+.+.+||.+.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            358999999999999999999999999999999988998754

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.17  E-value=1.6e-06  Score=82.64  Aligned_cols=41  Identities=34%  Similarity=0.264  Sum_probs=35.8

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        26 ~~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..++.+||+|||||++||++|+.|+++|++|+|+||.+.++
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   47 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERT   47 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-C
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            34557899999999999999999999999999999987764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.17  E-value=1.2e-06  Score=79.09  Aligned_cols=40  Identities=45%  Similarity=0.610  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|+++|+.|++.|+ +|+|+|+++ +||.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~   44 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK   44 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence            4799999999999999999999999 999999998 888654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.16  E-value=1.4e-05  Score=73.87  Aligned_cols=38  Identities=34%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++|+.+.+..
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  179 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA  179 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh
Confidence            47899999999999999999999999999999887643

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.16  E-value=1.5e-06  Score=82.90  Aligned_cols=41  Identities=29%  Similarity=0.267  Sum_probs=35.5

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        26 ~~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+.+.+||+|||||++||++|+.|+++|++|+||||.+.++
T Consensus         8 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   48 (499)
T 2qa2_A            8 HHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRT   48 (499)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCC
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            34467899999999999999999999999999999987764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.15  E-value=1.5e-06  Score=77.88  Aligned_cols=42  Identities=26%  Similarity=0.371  Sum_probs=37.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...+||+|||||++|+++|+.|++.|++|+|+|+. .+||.+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   53 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALM   53 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            34689999999999999999999999999999975 6787754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.15  E-value=2e-06  Score=79.14  Aligned_cols=37  Identities=30%  Similarity=0.601  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.++|+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            3589999999999999999999999999999998764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.15  E-value=1.9e-06  Score=79.62  Aligned_cols=37  Identities=38%  Similarity=0.555  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~~~G   66 (283)
                      .+||+|||||++||++|+.|+++|++ |+|+|+.+.++
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~   41 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   41 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence            57999999999999999999999999 99999988764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.15  E-value=1.9e-06  Score=81.33  Aligned_cols=41  Identities=29%  Similarity=0.507  Sum_probs=38.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---CCCc---EEEEccCCccccccce
Q 023333           31 LKVAIIGAGLAGMSTAVELLD---QGHE---VDIYESRSFIGGKVGS   71 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~---~G~~---V~vlEk~~~~GG~~~~   71 (283)
                      ++|+|||||++||+||..|++   .|++   |+|||+.+.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            699999999999999999999   9999   9999999999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.14  E-value=2e-06  Score=75.03  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+..+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~   38 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRN   38 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccc
Confidence            3799999999999999999999999999999986544

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.12  E-value=2.6e-05  Score=72.76  Aligned_cols=37  Identities=16%  Similarity=0.379  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  185 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL  185 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc
Confidence            4789999999999999999999999999999987654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.12  E-value=1.6e-06  Score=81.41  Aligned_cols=40  Identities=28%  Similarity=0.471  Sum_probs=37.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +||+|||||++|++||.+|++.|++|+|+|+++.+||.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   41 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL   41 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            7999999999999999999999999999999988998754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.12  E-value=6.5e-06  Score=77.08  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..+++|||||..|+-+|..+++.|.+|+|+|+.+++.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll  183 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN  183 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCS
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccc
Confidence            4689999999999999999999999999999988754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.12  E-value=8.7e-06  Score=77.51  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            58999999999999999999999999999999875443

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.12  E-value=1.2e-06  Score=82.28  Aligned_cols=39  Identities=15%  Similarity=0.162  Sum_probs=35.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-----CcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG-----HEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G-----~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||||++||++|+.|++.|     .+|+|||+++.+|.+
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~   73 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH   73 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCc
Confidence            469999999999999999999999     999999999988743

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.12  E-value=1.4e-06  Score=82.35  Aligned_cols=41  Identities=24%  Similarity=0.405  Sum_probs=38.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            58999999999999999999999999999999999998754

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.11  E-value=2.1e-06  Score=78.59  Aligned_cols=35  Identities=34%  Similarity=0.447  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~   65 (283)
                      +||+|||||++||++|+.|+++  |++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            4899999999999999999999  9999999998876

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.11  E-value=1.9e-06  Score=83.82  Aligned_cols=39  Identities=36%  Similarity=0.508  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~------G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||||++||++|+.|++.      |++|+|+||.+.+|++
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            47999999999999999999999      9999999999888765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.11  E-value=2.3e-06  Score=83.01  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++||++|+.|+++|++|+|||+.+.+.
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            5799999999999999999999999999999987654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.11  E-value=1.4e-06  Score=77.20  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|+++|+.|++.|++|+|+|+. .+||.+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            579999999999999999999999999999975 6788764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.10  E-value=1.5e-06  Score=78.37  Aligned_cols=37  Identities=30%  Similarity=0.510  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC------CcEEEEccCCcccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG------HEVDIYESRSFIGG   67 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G------~~V~vlEk~~~~GG   67 (283)
                      +||+|||||++||++|+.|+++|      ++|+|+|+....+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            48999999999999999999998      89999999875443

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.10  E-value=2.7e-06  Score=75.05  Aligned_cols=39  Identities=31%  Similarity=0.552  Sum_probs=35.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG~~~   70 (283)
                      +||+|||||++|+++|+.|+++|+ +|+|+|+. .+||.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~   41 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQIT   41 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccc
Confidence            689999999999999999999999 99999995 6787765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.10  E-value=2.9e-06  Score=80.90  Aligned_cols=40  Identities=33%  Similarity=0.424  Sum_probs=36.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ..+||+|||||++||++|+.|++.|++|+|+|+.+.+|+.
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            4689999999999999999999999999999999887653

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.10  E-value=2.2e-06  Score=77.43  Aligned_cols=40  Identities=35%  Similarity=0.391  Sum_probs=36.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~~   70 (283)
                      +||+|||||++||+||+.|+++  |++|+|+|+.+.+||...
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            4999999999999999999998  999999999999986543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.10  E-value=1.4e-06  Score=81.32  Aligned_cols=38  Identities=24%  Similarity=0.408  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~~G   66 (283)
                      ..+||+|||||++|+++|+.|+++| ++|+|+|+...+|
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~   60 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG   60 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCC
Confidence            4689999999999999999999999 9999999944444

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.10  E-value=1.5e-06  Score=82.16  Aligned_cols=40  Identities=25%  Similarity=0.442  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||+.|++.|++|+|+|+. .+||.+.
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~   59 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCV   59 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccc
Confidence            589999999999999999999999999999976 6788754

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.09  E-value=2.5e-06  Score=82.62  Aligned_cols=41  Identities=24%  Similarity=0.503  Sum_probs=37.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+..+|..
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS   57 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTS   57 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCcc
Confidence            45899999999999999999999999999999998766543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.09  E-value=2.9e-06  Score=81.87  Aligned_cols=42  Identities=31%  Similarity=0.432  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~   49 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY   49 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            458999999999999999999999999999999999999865

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.08  E-value=2.3e-06  Score=78.51  Aligned_cols=36  Identities=33%  Similarity=0.377  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            479999999999999999999999999999998765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.07  E-value=2.8e-05  Score=71.01  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  179 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL  179 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec
Confidence            3789999999999999999999999999999987653

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.07  E-value=2.4e-06  Score=78.19  Aligned_cols=35  Identities=37%  Similarity=0.428  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            47999999999999999999999999999999875

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.07  E-value=2.7e-06  Score=75.79  Aligned_cols=41  Identities=20%  Similarity=0.328  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc----CCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES----RSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk----~~~~GG~~~   70 (283)
                      .+||+|||||++|+++|+.|++.|++|+|+|+    ...+||.+.
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~   52 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLT   52 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceee
Confidence            47999999999999999999999999999999    567777754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.06  E-value=2.4e-06  Score=80.71  Aligned_cols=41  Identities=32%  Similarity=0.454  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   45 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence            47999999999999999999999999999999988988653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.06  E-value=2.9e-06  Score=79.92  Aligned_cols=40  Identities=38%  Similarity=0.609  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||++|++.|++|+|+|+. .+||.+.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            589999999999999999999999999999998 6888654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.05  E-value=2e-06  Score=82.88  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=38.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHH-hCCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~-~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++|+++|+.|+ +.|++|+|+|+++.+||.+..
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~   50 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYW   50 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccc
Confidence            479999999999999999999 999999999999999997653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.05  E-value=2.8e-06  Score=80.57  Aligned_cols=42  Identities=24%  Similarity=0.427  Sum_probs=37.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc--------CCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES--------RSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk--------~~~~GG~~~   70 (283)
                      ..+||+|||||++||+||.+|++.|++|+|+||        ...+||.+.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   54 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV   54 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence            358999999999999999999999999999998        456787654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.04  E-value=2.7e-06  Score=82.77  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||+|++||+||+.|+++|.+|+|+||.+..+|.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~   45 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            579999999999999999999999999999999887654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.04  E-value=3.8e-06  Score=80.47  Aligned_cols=37  Identities=41%  Similarity=0.580  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++||++|+.|+++|++|+|+||.+.++
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            5899999999999999999999999999999998654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.03  E-value=6.8e-05  Score=70.11  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++++|||+|.+|+.+|..+++.|.+|+++++.+++..
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  185 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR  185 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence            46899999999999999999999999999999886543

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.03  E-value=5e-06  Score=81.67  Aligned_cols=38  Identities=26%  Similarity=0.324  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlEk~~~~G   66 (283)
                      ..+||+|||||++||++|+.|++ .|++|+|+||.+.++
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            35799999999999999999999 999999999987653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.03  E-value=2.6e-06  Score=80.62  Aligned_cols=41  Identities=22%  Similarity=0.391  Sum_probs=37.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|++||++|++.|++|+|+|++ .+||.+.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            3589999999999999999999999999999997 5788754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.02  E-value=2.7e-06  Score=80.10  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            58999999999999999999999999999999 67888764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.02  E-value=3.5e-06  Score=79.01  Aligned_cols=36  Identities=36%  Similarity=0.571  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            479999999999999999999999999999998764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.02  E-value=3.2e-06  Score=80.40  Aligned_cols=40  Identities=30%  Similarity=0.422  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||++|++.|++|+|+|+++ +||.+.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            3799999999999999999999999999999975 888753

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.02  E-value=3.2e-06  Score=80.04  Aligned_cols=41  Identities=32%  Similarity=0.489  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            57999999999999999999999999999999888988653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.01  E-value=1e-05  Score=78.42  Aligned_cols=41  Identities=37%  Similarity=0.541  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|++||++|+.|+++|++|+|+||.+.+||...
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~  166 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK  166 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchh
Confidence            57999999999999999999999999999999999988754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.01  E-value=3.4e-06  Score=80.51  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~   41 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF   41 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCC
Confidence            47999999999999999999999999999999973

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.01  E-value=3.7e-06  Score=79.26  Aligned_cols=40  Identities=28%  Similarity=0.485  Sum_probs=36.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||.+|++.|++|+|+|++ .+||.+.
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            589999999999999999999999999999998 6788754

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.01  E-value=3.9e-06  Score=80.93  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++||++|+.|+++|++|+|+||.+.++
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~   62 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTI   62 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            4799999999999999999999999999999988764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.01  E-value=3.2e-06  Score=82.90  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-ccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~-~~G   66 (283)
                      ..+||+|||||++|++||+.|++.|.+|+|+|+++ .+|
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG   65 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG   65 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc
Confidence            35899999999999999999999999999999985 344

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.99  E-value=5.6e-06  Score=80.28  Aligned_cols=38  Identities=32%  Similarity=0.586  Sum_probs=35.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            58999999999999999999999999999999876554

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.98  E-value=4.3e-06  Score=77.29  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++|+++|+.|+++  |++|+|+|+....+
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~   74 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN   74 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            37999999999999999999999  99999999986543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.98  E-value=3.5e-06  Score=79.11  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||++|++.|++|+|+|++ .+||.+.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   43 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence            489999999999999999999999999999998 6788653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.97  E-value=5.1e-06  Score=81.40  Aligned_cols=40  Identities=20%  Similarity=0.294  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||+|++||+||+.|+++|.+|+|+||.+..+|..
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s   57 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT   57 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            4799999999999999999999999999999998776653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.97  E-value=4.3e-06  Score=79.42  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCcEEEEc--------cCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYE--------SRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlE--------k~~~~GG~~~   70 (283)
                      .+||+|||||++|++||++|++ .|++|+|+|        +.+.+||.+.
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~   52 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCV   52 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHH
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCcccc
Confidence            5899999999999999999999 999999999        3667888654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.97  E-value=6.6e-05  Score=72.13  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            468999999999999999999999999999998754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.97  E-value=3.6e-06  Score=79.16  Aligned_cols=39  Identities=28%  Similarity=0.532  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||||++|+++|+.|++.|++|+|+|+. .+||.+
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~   41 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVC   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcc
Confidence            479999999999999999999999999999998 677764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.96  E-value=6.1e-06  Score=81.39  Aligned_cols=39  Identities=23%  Similarity=0.303  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||+|++||+||+.|+++|.+|+|+||.+..+|.
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~   43 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence            479999999999999999999999999999999876554

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.96  E-value=6.2e-06  Score=78.02  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      ..+||+|||||++|++||++|++.|++|+|+||
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            468999999999999999999999999999995

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.95  E-value=6.9e-06  Score=72.39  Aligned_cols=38  Identities=26%  Similarity=0.445  Sum_probs=34.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +||+|||||++||++|..|+++|++|+|+|+  .+||.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            6899999999999999999999999999986  4788765

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.95  E-value=5.8e-06  Score=78.71  Aligned_cols=40  Identities=25%  Similarity=0.439  Sum_probs=36.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||.+|++.|++|+|+|+++ +||.+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~   41 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCV   41 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCcccc
Confidence            4899999999999999999999999999999984 787653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.94  E-value=5.9e-06  Score=77.53  Aligned_cols=40  Identities=28%  Similarity=0.447  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||.+|++.|++|+|+|+. .+||.+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            479999999999999999999999999999998 7787653

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.94  E-value=5.9e-06  Score=79.58  Aligned_cols=39  Identities=36%  Similarity=0.528  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||+|++||+||+.|++ |.+|+|+||.+..+|..
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            5799999999999999999999 99999999998877653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.93  E-value=8.1e-05  Score=70.08  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++++|||+|.+|+.+|..|++.|.+|+++|+.+.+..
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            47899999999999999999999999999999887543

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.93  E-value=3.3e-05  Score=72.76  Aligned_cols=37  Identities=32%  Similarity=0.465  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+.+|..+++. |.+|+++|+.+.+.
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l  196 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIM  196 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccc
Confidence            47899999999999999999999 99999999987653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.93  E-value=4.2e-06  Score=79.54  Aligned_cols=40  Identities=25%  Similarity=0.446  Sum_probs=36.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~---G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++|++||++|++.   |++|+|+|+.+ +||.+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            47999999999999999999999   99999999998 888654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.92  E-value=5.3e-05  Score=70.98  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL  203 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh
Confidence            4789999999999999999999999999999987653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.91  E-value=5.3e-05  Score=70.79  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ..++++|||+|.+|+.+|..+++.|.+|+|+|+.+.+..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  186 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG  186 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccc
Confidence            457999999999999999999999999999999887643

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.91  E-value=8.1e-06  Score=83.86  Aligned_cols=41  Identities=32%  Similarity=0.486  Sum_probs=38.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||..|++.|++|+|+|+++.+||++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            47899999999999999999999999999999999999876

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.91  E-value=9.9e-06  Score=77.70  Aligned_cols=36  Identities=31%  Similarity=0.488  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~---~G~~V~vlEk~~~   64 (283)
                      +.+||+|||||++|+++|+.|++   .|++|+|+|+.+.
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            35799999999999999999999   9999999999654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.89  E-value=5.9e-06  Score=77.91  Aligned_cols=41  Identities=29%  Similarity=0.341  Sum_probs=37.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-C------CCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD-Q------GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~-~------G~~V~vlEk~~~~GG~~~   70 (283)
                      .++|+|||||++|+.||..|++ .      |++|+|||+.+.+||.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            5799999999999999999999 7      999999999999998764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.89  E-value=7e-06  Score=77.36  Aligned_cols=39  Identities=26%  Similarity=0.447  Sum_probs=36.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||||++|++||..|++.|++|+|+|+.+ +||.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~   44 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVC   44 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCC
Confidence            4899999999999999999999999999999987 78764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.89  E-value=0.0003  Score=61.65  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF  189 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence            478999999999999999999999999999987654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.89  E-value=9.7e-05  Score=65.52  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTL  187 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcC
Confidence            478999999999999999999999999999987654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.89  E-value=9e-06  Score=78.80  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      +..++|+|||||++||+||++|++.  |++|+|+|+.+.+|
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4468999999999999999999998  89999999998865

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.88  E-value=6e-06  Score=78.53  Aligned_cols=40  Identities=40%  Similarity=0.646  Sum_probs=37.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||++||+||+.|+++ ++|+|||+++.+||.+.
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            36899999999999999999999 99999999999998865

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.88  E-value=7.4e-05  Score=70.13  Aligned_cols=37  Identities=30%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+|+|+.+++.
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  207 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL  207 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            4789999999999999999999999999999987653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.88  E-value=4.2e-05  Score=72.07  Aligned_cols=38  Identities=26%  Similarity=0.465  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++++|||||.+|+.+|..|++.|.+|+++|+.+++..
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  220 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA  220 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc
Confidence            47899999999999999999999999999999887643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.88  E-value=6.3e-06  Score=78.41  Aligned_cols=41  Identities=22%  Similarity=0.427  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCcEEEEc--------cCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYE--------SRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlE--------k~~~~GG~~~   70 (283)
                      .+||+|||||++|++||++|++ .|++|+|+|        +.+.+||.+.
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~   56 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV   56 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence            4899999999999999999999 999999999        4667888754

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.88  E-value=1.1e-05  Score=76.26  Aligned_cols=36  Identities=39%  Similarity=0.684  Sum_probs=33.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ||+|||+|++||+||+.|+++|.+|+|+||. ..||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            7999999999999999999999999999999 55554

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.87  E-value=8e-05  Score=70.56  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  230 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL  230 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchh
Confidence            35789999999999999999999999999999987654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.87  E-value=1.2e-05  Score=77.42  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~---~G~~V~vlEk~~~   64 (283)
                      +.++|+|||||++|+++|+.|++   .|++|+|+|+.+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            46899999999999999999999   9999999999753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.86  E-value=6.9e-06  Score=77.41  Aligned_cols=37  Identities=24%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      .++|+|||||++||+||+.|+++  |++|+|+|+++.++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            47999999999999999999998  89999999998865

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.86  E-value=1.1e-05  Score=83.31  Aligned_cols=40  Identities=35%  Similarity=0.625  Sum_probs=37.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG~~   69 (283)
                      .++|+|||||++||+||++|+++|+ +|+|||+.+.+||.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            5899999999999999999999999 799999999999875

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.85  E-value=1e-05  Score=76.39  Aligned_cols=41  Identities=37%  Similarity=0.519  Sum_probs=37.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~~~   70 (283)
                      .++|+|||||++|+.+|..|++.|  ++|+|||+.+.+||.+.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            479999999999999999999998  99999999999988753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.85  E-value=0.00021  Score=67.68  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+.+|..+++.|.+|+++|+.+++.
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  210 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA  210 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc
Confidence            4789999999999999999999999999999988764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.85  E-value=1e-05  Score=75.80  Aligned_cols=36  Identities=33%  Similarity=0.627  Sum_probs=34.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      +||+|||||++||+||++|++.  |++|+|+|+++.+|
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            6999999999999999999998  89999999999877

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.84  E-value=1.2e-05  Score=75.31  Aligned_cols=38  Identities=34%  Similarity=0.547  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG   67 (283)
                      .++|+|||||++||+||+.|++.  |++|+|+|+.+.+++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~   42 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSH   42 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcccc
Confidence            47999999999999999999998  789999999987654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.84  E-value=0.00016  Score=63.51  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+.+.
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            47899999999999999999999999999997654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.83  E-value=0.00015  Score=70.13  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+.+|..+++.|.+|+++++.+.+.
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  223 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM  223 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence            4789999999999999999999999999999987653

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.83  E-value=1.8e-05  Score=73.26  Aligned_cols=36  Identities=39%  Similarity=0.521  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      +||+|||||++|+.||+.|+++|++|+|+|+++..+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~   37 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM   37 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence            689999999999999999999999999999987443

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.83  E-value=0.00025  Score=66.55  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++|+.+.+.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  210 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA  210 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc
Confidence            4789999999999999999999999999999987653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.83  E-value=0.00021  Score=67.50  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-+|..|++.|.+|+++|+.+++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  221 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL  221 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc
Confidence            4789999999999999999999999999999987653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.82  E-value=1.3e-05  Score=78.26  Aligned_cols=39  Identities=21%  Similarity=0.344  Sum_probs=35.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~   68 (283)
                      .+||+|||+|++||+||+.|+++|  .+|+|+||.+..++.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~   45 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence            479999999999999999999999  999999998776553

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.82  E-value=1.7e-05  Score=76.00  Aligned_cols=40  Identities=30%  Similarity=0.419  Sum_probs=36.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+||+|||||++|++||++|+++|++|+|+|+  .+||.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            468999999999999999999999999999996  5788765

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.81  E-value=1.3e-05  Score=76.60  Aligned_cols=36  Identities=31%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh------------CCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLD------------QGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~------------~G~~V~vlEk~~~   64 (283)
                      +.++|+|||||++|+++|..|++            .|++|+|+|+.+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            35799999999999999999999            9999999999764

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.81  E-value=1.6e-05  Score=77.62  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-ccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~-~~G   66 (283)
                      .+||+|||||++|++||+.|++.|.+|+|+|+++ .+|
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG   64 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIG   64 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccC
Confidence            5899999999999999999999999999999984 455

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.80  E-value=6.4e-05  Score=70.74  Aligned_cols=37  Identities=24%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||||.+|+.+|..|++.|.+|+|+|+.+++.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  205 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL  205 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc
Confidence            4789999999999999999999999999999987653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.80  E-value=8.8e-05  Score=70.49  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+++.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  212 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL  212 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence            4789999999999999999999999999999988754

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.79  E-value=1.9e-05  Score=79.78  Aligned_cols=36  Identities=28%  Similarity=0.562  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~   65 (283)
                      .+||+|||||++|+++|++|+++|+ +|+|+|+.+..
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~   40 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   40 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence            5899999999999999999999998 99999998763

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.79  E-value=1.3e-05  Score=74.04  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFIGGK   68 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~---~G~~V~vlEk~~~~GG~   68 (283)
                      ++|+|||||++||++|+.|++   .|++|+|+|+++..+.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~   42 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFR   42 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceec
Confidence            589999999999999999999   89999999999876543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.79  E-value=2.3e-05  Score=72.35  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~~G   66 (283)
                      ++|+|||||++||+||..|+++|+  +|+|+|+.+..+
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~   39 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP   39 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC
Confidence            689999999999999999999998  899999998654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.79  E-value=1.1e-05  Score=76.81  Aligned_cols=35  Identities=34%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~---~G~~V~vlEk~~~   64 (283)
                      .+||+|||||++|+++|+.|++   .|++|+|+|+.+.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            4799999999999999999999   9999999999754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.78  E-value=8.3e-05  Score=69.62  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            478999999999999999999999999999998765

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.78  E-value=1.7e-05  Score=77.62  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-cccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~-~~GG   67 (283)
                      ..+||+|||||++|++||+.|++.|.+|+|+|+.+ .+|+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            35899999999999999999999999999999985 4554

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.78  E-value=1.9e-05  Score=73.09  Aligned_cols=39  Identities=31%  Similarity=0.412  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCc--EEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHE--VDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~--V~vlEk~~~~GG   67 (283)
                      ..++|+|||||++|++||..|+++|++  |+|+|+.+..+.
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y   48 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPY   48 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCB
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCc
Confidence            357999999999999999999999987  999999987653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.78  E-value=1.7e-05  Score=78.01  Aligned_cols=36  Identities=28%  Similarity=0.449  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHH---h-CCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELL---D-QGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~---~-~G~~V~vlEk~~~~   65 (283)
                      .+||+|||+|++||+||+.|+   + +|.+|+|+||.+..
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            589999999999999999999   6 89999999998753

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.77  E-value=0.00016  Score=67.70  Aligned_cols=37  Identities=24%  Similarity=0.367  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+.+|..|++.|.+|+|+|+.+++.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  206 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence            4789999999999999999999999999999987653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.76  E-value=2e-05  Score=76.56  Aligned_cols=33  Identities=18%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      ..+||+|||||++||+||.+|++.|++|+|+|+
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            458999999999999999999999999999997

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.75  E-value=3.5e-05  Score=72.85  Aligned_cols=38  Identities=32%  Similarity=0.539  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  222 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIG  222 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchh
Confidence            45789999999999999999999999999999987654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.74  E-value=7.1e-05  Score=70.28  Aligned_cols=37  Identities=22%  Similarity=0.428  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  207 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL  207 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc
Confidence            4789999999999999999999999999999988754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.72  E-value=2.3e-05  Score=77.26  Aligned_cols=38  Identities=13%  Similarity=0.294  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~------G~~V~vlEk~~~~GG   67 (283)
                      .+||+|||+|++||+||+.|+++      |.+|+|+||.+..++
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s   65 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS   65 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence            58999999999999999999997      999999999876443

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.72  E-value=2.2e-05  Score=75.65  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .||++|||+|++|+.||.++++.|++|.|+|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            4899999999999999999999999999999743

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.72  E-value=0.00015  Score=67.84  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+.+|..+++.|.+|+++|+.+.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  185 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVL  185 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchh
Confidence            4789999999999999999999999999999987653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.72  E-value=0.00023  Score=67.24  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l  221 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM  221 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc
Confidence            4789999999999999999999999999999988753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.71  E-value=6.9e-05  Score=70.36  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  213 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV  213 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence            4789999999999999999999999999999987653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.70  E-value=0.00039  Score=65.73  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+-+|..+++.|.+|+++|+.+.+.
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  234 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL  234 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc
Confidence            4789999999999999999999999999999988654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.69  E-value=2.6e-05  Score=73.03  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      +||+|||||++|++||.+|++.  |++|+|+|+.+.++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNIS   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            5899999999999999999998  99999999998654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.69  E-value=0.00046  Score=64.85  Aligned_cols=37  Identities=35%  Similarity=0.380  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l  202 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL  202 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc
Confidence            4689999999999999999999999999999987653

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.68  E-value=3e-05  Score=76.49  Aligned_cols=36  Identities=36%  Similarity=0.414  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-----CCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD-----QGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~-----~G~~V~vlEk~~~~   65 (283)
                      .+||+|||||++||++|..|++     .|++|+|+||.+..
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            5799999999999999999999     99999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.66  E-value=3.1e-05  Score=74.44  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      ++|+|||||++||+||+.|++.  |++|+|+|+.+.++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            6899999999999999999998  78999999998865

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.66  E-value=3e-05  Score=72.50  Aligned_cols=36  Identities=33%  Similarity=0.614  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      +||+|||||++|++||..|++.  |++|+|+|+.+.+|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            4899999999999999999998  89999999998765

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.66  E-value=3.4e-05  Score=73.15  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC---CcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G---~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++|++||..|++.|   .+|+|+|+.+.++
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~   74 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNIS   74 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence            589999999999999999999988   9999999988765

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.65  E-value=4.2e-05  Score=70.78  Aligned_cols=37  Identities=32%  Similarity=0.523  Sum_probs=34.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc--EEEEccCCcccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHE--VDIYESRSFIGG   67 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~--V~vlEk~~~~GG   67 (283)
                      ++|+|||||++|++||..|+++|++  |+|+|+.+..+.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y   41 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPY   41 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSB
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCc
Confidence            5899999999999999999999987  999999987654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.65  E-value=4e-05  Score=70.93  Aligned_cols=38  Identities=29%  Similarity=0.342  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~~G   66 (283)
                      ..++|+|||||++|++||..|++.|+  +|+|+|+.+.++
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence            35899999999999999999999998  499999988654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.65  E-value=0.00038  Score=61.05  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            478999999999999999999999999999987754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.64  E-value=0.00014  Score=68.04  Aligned_cols=37  Identities=32%  Similarity=0.397  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++++.+.+.
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  183 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL  183 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence            4789999999999999999999999999999987654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.64  E-value=4.2e-05  Score=70.39  Aligned_cols=39  Identities=28%  Similarity=0.483  Sum_probs=34.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++.+|+|||||++|++||..|.+.+.+|+|+|+.+..+
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~   45 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP   45 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence            346799999999999999999988899999999998865

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.63  E-value=0.0004  Score=61.61  Aligned_cols=36  Identities=25%  Similarity=0.435  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF  187 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            478999999999999999999999999999987654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.63  E-value=3.4e-05  Score=73.47  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=32.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCc
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSF   64 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlEk~~~   64 (283)
                      ..+.+|+||||+|.+|+.+|.+|++ .|++|+|||+.+.
T Consensus        14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            3568999999999999999999997 6789999999764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.62  E-value=0.00018  Score=68.31  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~---G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|..|+-+|..|++.   |.+|+++|+.+++.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  230 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL  230 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc
Confidence            47899999999999999999999   99999999987653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.61  E-value=4.1e-05  Score=72.36  Aligned_cols=37  Identities=27%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      .+||+|||||++|++||..|++.  |.+|+|+|+.+..+
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   74 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYS   74 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCS
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            47999999999999999999986  89999999988765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.61  E-value=0.00018  Score=68.27  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~---G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-+|..+++.   |.+|+++|+.+.+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  226 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL  226 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc
Confidence            47899999999999999999999   99999999988654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.61  E-value=0.00059  Score=60.08  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~  189 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKF  189 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcC
Confidence            578999999999999999999999999999987754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.61  E-value=0.00021  Score=67.31  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++++.+++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  223 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc
Confidence            4789999999999999999999999999999987653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.60  E-value=5.9e-05  Score=70.34  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~~G   66 (283)
                      .++|+|||||++|++||..|++.|+  +|+|+|+.+.++
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~   42 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   42 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC
Confidence            5799999999999999999999998  799999987643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.60  E-value=0.00019  Score=68.09  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  218 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL  218 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            4789999999999999999999999999999987653

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.60  E-value=4.8e-05  Score=73.08  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|++|||+|++|+.+|.+|++.|++|+|+|+.+.
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            468999999999999999999999999999999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.58  E-value=4.1e-05  Score=72.73  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~G   66 (283)
                      ..++|+|||||++|++||..|+++  |.+|+|+|+.+.++
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            358999999999999999998877  88999999998654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.57  E-value=0.0007  Score=64.63  Aligned_cols=36  Identities=8%  Similarity=0.117  Sum_probs=33.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ++++|||+|.+|+.+|..+++.|.+|+++|+.+.+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  250 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK  250 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence            799999999999999999999999999999987653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.57  E-value=0.001  Score=62.38  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++++.+++.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  208 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL  208 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC
Confidence            4789999999999999999999999999999987654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.56  E-value=0.00089  Score=58.48  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            478999999999999999999999999999987754

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.55  E-value=0.00046  Score=65.12  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+..|..+++.|.+|+++++.+.+.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  227 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL  227 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence            4789999999999999999999999999999987653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.55  E-value=0.00041  Score=61.27  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            578999999999999999999999999999987754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.55  E-value=6.9e-05  Score=68.53  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~   63 (283)
                      .+||+|||||++|++||..|++.|  .+|+|+|+++
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            489999999999999999999999  4689999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.54  E-value=0.00019  Score=69.13  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++++|||||..|+-.|..+++.|.+|+|+++..
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~  256 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI  256 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccc
Confidence            3789999999999999999999999999998754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.52  E-value=6.5e-05  Score=68.60  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..||+|||||++|++||..|++.| +|+|+|+.+..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            579999999999999999999999 99999998764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.52  E-value=0.00039  Score=65.34  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++++.+++.
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  216 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL  216 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            4789999999999999999999999999999987653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.52  E-value=0.00058  Score=64.02  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||+|.+|+-.|..+++.|.+|+++++.+.+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l  206 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL  206 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            5789999999999999999999999999999987643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.51  E-value=0.00012  Score=67.46  Aligned_cols=82  Identities=13%  Similarity=0.079  Sum_probs=59.5

Q ss_pred             HHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCCCCCCCCCceEEecccccCCCCCcchhHHHHHHH
Q 023333          163 DEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQ  242 (283)
Q Consensus       163 ~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~  242 (283)
                      +++++.+..++...+|..   ....-.+.+...+.....|| ...+|..++|++|||+|||++..++...|++++.|+..
T Consensus       343 ~~~~~~~~~~l~~~~p~~---~~~~~~v~~~~~~~P~~~~~-~~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~  418 (425)
T 3ka7_A          343 ESEIEMGLEDLKEIFPGK---RYEVLLIQSYHDEWPVNRAA-SGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMS  418 (425)
T ss_dssp             HHHHHHHHHHHHHHSTTC---CEEEEEEEEEBTTBCSBSSC-TTCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC---ceEEEEEEEECCCccccccc-cCCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHH
Confidence            466778888888999852   12222344444443333444 34568888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 023333          243 ASAYIC  248 (283)
Q Consensus       243 aA~~il  248 (283)
                      +|++|+
T Consensus       419 ~~~~i~  424 (425)
T 3ka7_A          419 VMEKVL  424 (425)
T ss_dssp             HHHC--
T ss_pred             HHHHhh
Confidence            999886

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.50  E-value=6e-05  Score=70.30  Aligned_cols=36  Identities=36%  Similarity=0.694  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~---~G~~V~vlEk~~~~   65 (283)
                      .++|+|||||++|++||..|++   .|++|+|+|+++..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4799999999999999999999   89999999998864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.49  E-value=0.00049  Score=65.23  Aligned_cols=36  Identities=28%  Similarity=0.218  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh----CCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~----~G~~V~vlEk~~~~   65 (283)
                      .++|+|||||.+|+-+|..|++    .|.+|+++++.+.+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~  219 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN  219 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc
Confidence            4789999999999999999876    47889999987654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.49  E-value=7.3e-05  Score=68.56  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~   64 (283)
                      .++|+|||||++|++||.+|++.+  .+|+|+|+++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            478999999999999999998876  58999999875

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.47  E-value=0.0019  Score=61.00  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..+++|||+|.+|+-+|..+++.|.+|+++++..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            3679999999999999999999999999999753

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.47  E-value=7e-05  Score=70.04  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~G   66 (283)
                      ++|+|||||++|++||.+|++.|  .+|+|+|+++..+
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~   38 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   38 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            37999999999999999999988  4799999987654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.46  E-value=0.00099  Score=57.65  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||+|.+|+.+|..|++.| +|+++++.+.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            578999999999999999999999 9999987654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.46  E-value=0.00097  Score=59.90  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            478999999999999999999999999999987654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.46  E-value=0.00077  Score=59.46  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~  190 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY  190 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCcc
Confidence            478999999999999999999999999999987654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.46  E-value=0.0014  Score=57.58  Aligned_cols=36  Identities=31%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  180 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc
Confidence            478999999999999999999999999999987654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.46  E-value=7.6e-05  Score=71.15  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+++|+|||||.+|+.+|..|++.+++|+|+|+++.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            356899999999999999999999999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.42  E-value=0.0011  Score=62.58  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            468999999999999999999999999999974

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.42  E-value=0.0012  Score=57.79  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            478999999999999999999999999999988764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.41  E-value=0.00018  Score=70.56  Aligned_cols=43  Identities=35%  Similarity=0.517  Sum_probs=40.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      .+||+|||+|+.|...|..|++.|++|+++||++..||++++.
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~   50 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASF   50 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccc
Confidence            6999999999999999999999999999999999999998754

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.40  E-value=0.00011  Score=68.51  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~   64 (283)
                      .++|+|||||++|++||.+|++.+  ++|+|+|+++.
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            368999999999999999999865  78999999875

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.35  E-value=9.4e-05  Score=71.08  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .+|+||||+|.+|+.+|.+|++ |.+|+|||+.+..+
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~   61 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT   61 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence            5899999999999999999999 99999999987654

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.34  E-value=1.7e-05  Score=65.50  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=41.6

Q ss_pred             CCCCC-CCCCCCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhccc
Q 023333          201 GPGKV-PLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE  253 (283)
Q Consensus       201 ~Pg~~-~~rp~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~g~  253 (283)
                      .||.. .+++..+.|+++||+||+.+.. |..+|+||+.+|.++|++|+...+.
T Consensus       102 ~pg~~~~~~~~l~~p~grl~FAGe~ts~-~~g~~eGAl~SG~raA~~i~~~l~~  154 (181)
T 2e1m_C          102 TPHQMTAFHLDVVRPEGPVYFAGEHVSL-KHAWIEGAVETAVRAAIAVNEAPVG  154 (181)
T ss_dssp             CTTHHHHHHHHHHSCBTTEEECSGGGTT-STTSHHHHHHHHHHHHHHHHTCCC-
T ss_pred             CCCchHHHHHHHhCCCCcEEEEEHHHcC-CccCHHHHHHHHHHHHHHHHHHhcc
Confidence            45532 2344556788999999999996 9999999999999999999987653

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.32  E-value=0.00014  Score=70.55  Aligned_cols=36  Identities=28%  Similarity=0.303  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~   64 (283)
                      ..+|+||||||.+|+.+|.+|++.+ .+|+|+|+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            3589999999999999999999998 69999999876

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.31  E-value=0.0013  Score=62.69  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..+++|||+|.+|+-.|..+++.|.+|+++++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            357999999999999999999999999999974

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.29  E-value=0.0018  Score=60.62  Aligned_cols=36  Identities=17%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++++|||+|.+|+-+|..+++.|.+|+++|+.+.+
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            478999999999999999999999999999998754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.28  E-value=0.002  Score=61.27  Aligned_cols=37  Identities=8%  Similarity=0.017  Sum_probs=32.4

Q ss_pred             CCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHh
Q 023333          214 PVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA  250 (283)
Q Consensus       214 pv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~  250 (283)
                      ..+++|.+||+....++.+-.-|...|..+|+.|...
T Consensus       363 ~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~  399 (502)
T 4g6h_A          363 GSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKM  399 (502)
T ss_dssp             TCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            5789999999999888888788999999999998654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.26  E-value=0.00012  Score=68.77  Aligned_cols=91  Identities=13%  Similarity=0.196  Sum_probs=60.3

Q ss_pred             CChHHHHHHhcccccccCCCCccccccccceeee-----cccccc-cCCCCCC-CCCCCCCCCCceEEecccccCCCCCc
Q 023333          160 LPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKI-----AQSLYR-GGPGKVP-LRTDQKTPVKNLFLAGSYTKQDYIDS  232 (283)
Q Consensus       160 ~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~-----~~a~~~-~~Pg~~~-~rp~~~tpv~~l~laGd~t~~~~~~~  232 (283)
                      .+.+++++.+...+...+|...........+.+.     .+..|. ..||... .++..++|+++||+|||++...|..+
T Consensus       360 ~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~g~  439 (472)
T 1b37_A          360 QSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGY  439 (472)
T ss_dssp             SCHHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTTTS
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCCCc
Confidence            4678888888888888887421001110001110     012222 2344331 23455789999999999999888999


Q ss_pred             chhHHHHHHHHHHHHHHh
Q 023333          233 MEGPTLSDRQASAYICNA  250 (283)
Q Consensus       233 ~ega~~~g~~aA~~il~~  250 (283)
                      |+||+.+|..||++|+..
T Consensus       440 v~GA~~SG~~aA~~i~~~  457 (472)
T 1b37_A          440 VHGAYLSGIDSAEILINC  457 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            999999999999999876

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.25  E-value=0.00022  Score=67.92  Aligned_cols=38  Identities=18%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..+|++|||+|.+|+.+|++|++.|++|+|+|+.+..+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            35899999999999999999999999999999987654

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.22  E-value=0.00025  Score=65.43  Aligned_cols=52  Identities=15%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             ccCCCC-CCCCCCCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHh
Q 023333          199 RGGPGK-VPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA  250 (283)
Q Consensus       199 ~~~Pg~-~~~rp~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~  250 (283)
                      ...||. ..+++..+.|++++|+||..|...|..+|+||+.||.+||++|+..
T Consensus       373 ~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~  425 (431)
T 3k7m_X          373 APRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS  425 (431)
T ss_dssp             CCCTTTTTTSSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCcccHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence            346675 5667788889999999999999999999999999999999999864

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.19  E-value=8e-05  Score=70.85  Aligned_cols=95  Identities=19%  Similarity=0.270  Sum_probs=61.5

Q ss_pred             CCChHHHHHHhcccccccCCCCccccccccceeeecc-----ccc--ccCCCC-CCCCCCCCCCCCceEEecccccCCCC
Q 023333          159 PLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQ-----SLY--RGGPGK-VPLRTDQKTPVKNLFLAGSYTKQDYI  230 (283)
Q Consensus       159 ~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~-----a~~--~~~Pg~-~~~rp~~~tpv~~l~laGd~t~~~~~  230 (283)
                      ..+.+++++.+..++...||.............+...     ..+  ...||. ..+++..++|++++|+|||++...|+
T Consensus       354 ~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~  433 (520)
T 1s3e_A          354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWS  433 (520)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSST
T ss_pred             cCCHHHHHHHHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCc
Confidence            4467788888877777776631000111111111111     111  234442 23455567899999999999998899


Q ss_pred             CcchhHHHHHHHHHHHHHHhccc
Q 023333          231 DSMEGPTLSDRQASAYICNAGEE  253 (283)
Q Consensus       231 ~~~ega~~~g~~aA~~il~~~g~  253 (283)
                      .+|+||+.+|..||++|+...++
T Consensus       434 g~v~GAi~SG~~aA~~i~~~l~~  456 (520)
T 1s3e_A          434 GYMEGAVEAGERAAREILHAMGK  456 (520)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEhHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999987654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.18  E-value=0.00036  Score=66.49  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|++|||+|.+|+.+|.+|++.|.+|+|+|+.+.
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            468999999999999999999999999999999864

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.18  E-value=0.00024  Score=68.94  Aligned_cols=35  Identities=34%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~   63 (283)
                      ..+|+||||||.+|+.+|.+|++. +.+|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999975 78999999987

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.17  E-value=0.0034  Score=55.08  Aligned_cols=35  Identities=9%  Similarity=0.032  Sum_probs=27.8

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~-aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++++|||||. .++.+|..+++.+.+|+++++.+.
T Consensus       146 ~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~  181 (304)
T 4fk1_A          146 DQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNE  181 (304)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCC
T ss_pred             CCceeeecCCCchhhhHHHHHHhCCceEEEEecccc
Confidence            35788888886 568888888888999999987543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.14  E-value=0.002  Score=61.43  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  390 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCccc
Confidence            478999999999999999999999999999987754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.10  E-value=0.0041  Score=60.19  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..+|+|||||.+|+-+|..|++.|.+|+++++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            358999999999999999999999999999986

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.10  E-value=0.0002  Score=68.17  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..+||+|||+|++||++|+.|.+.|...+++|+.+..|
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~   75 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHA   75 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----C
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCC
Confidence            34899999999999999999988765544444444433

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.06  E-value=0.00046  Score=67.04  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlEk~~~~   65 (283)
                      ..+|++|||+|.+|+.+|.+|++ .|.+|+|+|+.+..
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            45899999999999999999999 79999999998654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.04  E-value=0.012  Score=55.13  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~   65 (283)
                      ..++|+|||||.+|+-+|..+.+.|. +|+++++.+..
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            45799999999999999999999998 49999987653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.93  E-value=0.0056  Score=54.14  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      +.++|+|||+|.+|+-+|..|++.| +|+++.+.
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            3578999999999999999999998 69999876

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.91  E-value=0.00062  Score=65.46  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~~   65 (283)
                      ..+|++|||+|.+|+.+|.+|++. |.+|+|+|+.+..
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            358999999999999999999998 8999999998654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.91  E-value=0.00036  Score=67.56  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlEk~~~~   65 (283)
                      .+|+||||||.+|+.+|.+|++ .+.+|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4799999999999999999998 68999999998754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.71  E-value=0.0027  Score=62.72  Aligned_cols=38  Identities=24%  Similarity=0.191  Sum_probs=34.1

Q ss_pred             CCcEEEEC--CCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIG--AGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG--~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++|+|||  +|.+|+.+|..|++.|.+|+++++.+.+..
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~  562 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSS  562 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTG
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccc
Confidence            46799999  999999999999999999999999887654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.58  E-value=0.0026  Score=50.34  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+..+|+|+|+|..|...|..|.+.|++|+++++++.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4467899999999999999999999999999998764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.55  E-value=0.0029  Score=62.14  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=35.9

Q ss_pred             CCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhcc
Q 023333          211 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGE  252 (283)
Q Consensus       211 ~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~g  252 (283)
                      ..++.+++|+||++|...|..+|+||+.||.+||++|+...+
T Consensus       618 ~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~  659 (662)
T 2z3y_A          618 APQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL  659 (662)
T ss_dssp             ---CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHcc
Confidence            346679999999999999999999999999999999987643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.50  E-value=0.004  Score=48.50  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+.+|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            357899999999999999999999999999999764

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.50  E-value=0.0018  Score=59.99  Aligned_cols=91  Identities=13%  Similarity=0.105  Sum_probs=57.3

Q ss_pred             ChHHHHHHhcccccccCCCC--ccccc---cccceeeeccc-ccccCCCC-CCCCCCCCCCCCceEEecccccCCCCCcc
Q 023333          161 PNDEIIRRVARQVGTLFPLP--QGLEV---IWSSFVKIAQS-LYRGGPGK-VPLRTDQKTPVKNLFLAGSYTKQDYIDSM  233 (283)
Q Consensus       161 ~~~eL~~~l~~~l~~~~P~l--~~l~~---~~~~vv~~~~a-~~~~~Pg~-~~~rp~~~tpv~~l~laGd~t~~~~~~~~  233 (283)
                      +.+++.+.+..++...||..  .+...   .|..--...++ .....||. ..+++..++|+++||+|||++...|+.++
T Consensus       354 ~~~~~~~~~l~~L~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~v  433 (453)
T 2yg5_A          354 SAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHV  433 (453)
T ss_dssp             CHHHHHHHHHHHHHHHHCGGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTTTSH
T ss_pred             CHHHHHHHHHHHHHHHhCccCCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccccch
Confidence            46677777777777666531  11111   11110000111 11124442 22345567899999999999988888899


Q ss_pred             hhHHHHHHHHHHHHHHhc
Q 023333          234 EGPTLSDRQASAYICNAG  251 (283)
Q Consensus       234 ega~~~g~~aA~~il~~~  251 (283)
                      +||+.||..||++|+...
T Consensus       434 ~gA~~SG~~aA~~i~~~l  451 (453)
T 2yg5_A          434 DGAVRMGQRTAADIIARS  451 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=96.50  E-value=0.00045  Score=65.02  Aligned_cols=47  Identities=9%  Similarity=0.023  Sum_probs=40.0

Q ss_pred             CCCCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhccch
Q 023333          208 RTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEEL  254 (283)
Q Consensus       208 rp~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~g~~  254 (283)
                      ++..++|+++||+|||++...|..+||||+.+|..||++|+...+.-
T Consensus       442 ~~~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~~~  488 (495)
T 2vvm_A          442 LQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGTK  488 (495)
T ss_dssp             HHHHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHhccc
Confidence            33445689999999999998899999999999999999998775543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.42  E-value=0.005  Score=62.29  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=37.6

Q ss_pred             CCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhc
Q 023333          210 DQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       210 ~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~  251 (283)
                      ...++.++||+||++|...|..+|+||+.+|.+||++|+...
T Consensus       788 ~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l  829 (852)
T 2xag_A          788 GAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF  829 (852)
T ss_dssp             TCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence            335677999999999999999999999999999999998874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.13  E-value=0.0051  Score=47.05  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~   38 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   38 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36899999999999999999999999999998653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.09  E-value=0.021  Score=52.80  Aligned_cols=38  Identities=16%  Similarity=-0.128  Sum_probs=30.5

Q ss_pred             CCCceEEecccccCC----------CCCcchhHHHHHHHHHHHHHHhc
Q 023333          214 PVKNLFLAGSYTKQD----------YIDSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       214 pv~~l~laGd~t~~~----------~~~~~ega~~~g~~aA~~il~~~  251 (283)
                      ..+++|.+||++...          .+.+..-|...|..+|..|+...
T Consensus       296 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l  343 (437)
T 3sx6_A          296 KYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADL  343 (437)
T ss_dssp             SCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            689999999997753          35566778999999999988664

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.07  E-value=0.0066  Score=46.98  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|+|+|..|...|..|.++|++|+++|+++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999998754

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.06  E-value=0.0036  Score=62.71  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=55.4

Q ss_pred             CCChHHHHHHhcccccccCCCCc---cc---cccccceeeecccccccCCCCCC-CCCCCCCC-CCceEEecccccCCCC
Q 023333          159 PLPNDEIIRRVARQVGTLFPLPQ---GL---EVIWSSFVKIAQSLYRGGPGKVP-LRTDQKTP-VKNLFLAGSYTKQDYI  230 (283)
Q Consensus       159 ~~~~~eL~~~l~~~l~~~~P~l~---~l---~~~~~~vv~~~~a~~~~~Pg~~~-~rp~~~tp-v~~l~laGd~t~~~~~  230 (283)
                      ..+.+++++.+...+..+|+...   +.   ...|..---..++.-...||... ..+....| .++|++||++|...|+
T Consensus       677 ~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~  756 (776)
T 4gut_A          677 TLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFP  756 (776)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSC
T ss_pred             cCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCC
Confidence            34677888888888877776311   11   11232211111111112233211 11111234 4899999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHH
Q 023333          231 DSMEGPTLSDRQASAYICN  249 (283)
Q Consensus       231 ~~~ega~~~g~~aA~~il~  249 (283)
                      .+|+||+.||.++|++|+.
T Consensus       757 gtveGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          757 QTVTGAYLSGVREASKIAA  775 (776)
T ss_dssp             SSHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999874

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.04  E-value=0.0053  Score=56.33  Aligned_cols=77  Identities=13%  Similarity=0.120  Sum_probs=47.6

Q ss_pred             HHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCCCCCCCCCCceEEecccccCCCCCcchhHHHHHHH
Q 023333          163 DEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQ  242 (283)
Q Consensus       163 ~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~  242 (283)
                      +++.+....++.+.+|+   .+...-...+.....+...|+.+   +. .++ +++|+|||++...+.-+||+|+.||..
T Consensus       327 ~~~~~~~~~~L~~~~p~---~~~~~~~~~~~~~p~~~~~~~~~---~~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~  398 (421)
T 3nrn_A          327 KKAIEKGWEELLEIFPE---GEPLLAQVYRDGNPVNRTRAGLH---IE-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMK  398 (421)
T ss_dssp             HHHHHHHHHHHHHHCTT---CEEEEEEEC-------------C---CC-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC---CeEEEeeeccCCCCcccccCCCC---CC-CCC-CcEEEECCcccCCCceeeehHHHHHHH
Confidence            46677888888899982   12222222222333343333332   22 578 999999999987766677999999999


Q ss_pred             HHHHH
Q 023333          243 ASAYI  247 (283)
Q Consensus       243 aA~~i  247 (283)
                      ||+.|
T Consensus       399 aA~~l  403 (421)
T 3nrn_A          399 ALEKL  403 (421)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99987

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.01  E-value=0.01  Score=46.74  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+.+++|+|+|..|...|..|.+.|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            35689999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.93  E-value=0.0065  Score=44.96  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~   64 (283)
                      .++|+|+|+|..|...+..|.+.| ++|+++++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~   40 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA   40 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence            468999999999999999999999 89999998653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.87  E-value=0.0089  Score=48.43  Aligned_cols=35  Identities=29%  Similarity=0.240  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~-G~~V~vlEk~~~   64 (283)
                      ..+|+|+|+|..|...|..|.+. |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            46899999999999999999999 999999998753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=95.73  E-value=0.2  Score=45.53  Aligned_cols=38  Identities=13%  Similarity=0.070  Sum_probs=31.5

Q ss_pred             CCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhc
Q 023333          214 PVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       214 pv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~  251 (283)
                      ..+|+|.+||.+....+.....|...+..+|..|....
T Consensus       298 ~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l  335 (409)
T 3h8l_A          298 KYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL  335 (409)
T ss_dssp             SCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            57999999999876666666778999999999987664

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.63  E-value=0.012  Score=51.90  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|||+|..|...|..++++|++|+++|+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4679999999999999999999999999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.62  E-value=0.011  Score=45.23  Aligned_cols=34  Identities=35%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|+|+|+|..|...|..|.+.|++|+++++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.50  E-value=0.017  Score=54.21  Aligned_cols=39  Identities=26%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        26 ~~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+.+.++|.|||+|..|...|..++++|++|+++|+++.
T Consensus        50 ~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            334457899999999999999999999999999998765

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.50  E-value=0.011  Score=55.03  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||.|.+|+++|..|+++|++|+++|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            468999999999999999999999999999987654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.50  E-value=0.01  Score=55.51  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|+|||.|.+|+++|..|.++|++|+++|.++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            5789999999999999999999999999999865

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=95.48  E-value=0.014  Score=52.13  Aligned_cols=37  Identities=24%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            3568999999999999999999999999999997754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.26  E-value=0.01  Score=55.58  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             CCCCCCC-CCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhc
Q 023333          206 PLRTDQK-TPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       206 ~~rp~~~-tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~  251 (283)
                      .+||..+ ||++|||++||+|..+  ..+.||..||..||+.||++.
T Consensus       447 ~~RP~~~~t~i~gLyl~G~~t~pG--~Gv~ga~~SG~~aA~~il~dL  491 (501)
T 4dgk_A          447 WFRPHNRDKTITNLYLVGAGTHPG--AGIPGVIGSAKATAGLMLEDL  491 (501)
T ss_dssp             ---------CCTTEEECCCH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCCCEEEECCCCCCc--ccHHHHHHHHHHHHHHHHHHh
Confidence            3678664 8999999999998654  457899999999999999873

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.24  E-value=0.016  Score=51.82  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|+|||+|..|...|..++.+|++|+++|.++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46899999999999999999999999999998654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=95.20  E-value=0.0045  Score=57.69  Aligned_cols=90  Identities=11%  Similarity=0.062  Sum_probs=60.9

Q ss_pred             CCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCC----CCCCCCCCCCCceEEecccccCCCCCcch
Q 023333          159 PLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKV----PLRTDQKTPVKNLFLAGSYTKQDYIDSME  234 (283)
Q Consensus       159 ~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~----~~rp~~~tpv~~l~laGd~t~~~~~~~~e  234 (283)
                      ..+.+++++.+..++...++...  ...+..+.+...++....||..    ..++...+++++||+|||++..   ..|+
T Consensus       374 ~~~~e~~~~~~~~~L~~~~g~~~--~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~g~~  448 (475)
T 3lov_A          374 HESDEVLQQAVLQDLEKICGRTL--EPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDG---VGLP  448 (475)
T ss_dssp             GSCHHHHHHHHHHHHHHHHSSCC--CCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSC---SSHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCC--CCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCC---CCHH
Confidence            34678888888888888877421  3334455666666555565531    1233333567899999998652   3589


Q ss_pred             hHHHHHHHHHHHHHHhccc
Q 023333          235 GPTLSDRQASAYICNAGEE  253 (283)
Q Consensus       235 ga~~~g~~aA~~il~~~g~  253 (283)
                      +|+.+|..+|++|+.+.+.
T Consensus       449 ~a~~sG~~aA~~i~~~l~~  467 (475)
T 3lov_A          449 DCVASAKTMIESIELEQSH  467 (475)
T ss_dssp             HHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999887543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=95.14  E-value=0.016  Score=54.76  Aligned_cols=38  Identities=21%  Similarity=0.134  Sum_probs=35.3

Q ss_pred             CCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHh
Q 023333          213 TPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA  250 (283)
Q Consensus       213 tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~  250 (283)
                      .+.++||+||+.|...|..+|+||+.||.++|++|+..
T Consensus       469 ~~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~  506 (516)
T 1rsg_A          469 GQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDL  506 (516)
T ss_dssp             CSSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHH
Confidence            47799999999999999999999999999999999865

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.10  E-value=0.025  Score=54.23  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            358999999999999999999999999999999886

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.05  E-value=0.023  Score=49.56  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..++++|++|+++|+++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.00  E-value=0.026  Score=52.09  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|||+|.+|+.+|..+...|.+|+++|+++.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            457999999999999999999999999999998864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.00  E-value=0.024  Score=50.36  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.|||+|..|...|..|++.|++|+++.+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            689999999999999999999999999999876

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=94.99  E-value=0.014  Score=54.67  Aligned_cols=41  Identities=22%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             CCCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHh
Q 023333          209 TDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA  250 (283)
Q Consensus       209 p~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~  250 (283)
                      +..++|.++||+||+++.. +...++||+.+|..+|++|+..
T Consensus       444 ~~l~~~~~~l~faG~~~~~-~~~~v~gAi~sg~~aA~~i~~~  484 (489)
T 2jae_A          444 EKLLEPVDKIYFAGDHLSN-AIAWQHGALTSARDVVTHIHER  484 (489)
T ss_dssp             HHHTSCBTTEEECSGGGBS-STTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcEEEeEHHhcc-CccHHHHHHHHHHHHHHHHHHH
Confidence            3345788999999999864 6778999999999999999754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=94.96  E-value=0.0091  Score=55.15  Aligned_cols=87  Identities=13%  Similarity=0.138  Sum_probs=59.6

Q ss_pred             CCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCC----CCCCCCCCCCCceEEecccccCCCCCcch
Q 023333          159 PLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKV----PLRTDQKTPVKNLFLAGSYTKQDYIDSME  234 (283)
Q Consensus       159 ~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~----~~rp~~~tpv~~l~laGd~t~~~~~~~~e  234 (283)
                      ..+.+++++.+..++...|+...  ...+..+.+...+.....||..    ..++...++.++||+|||++.  + ..|+
T Consensus       377 ~~~~~~~~~~~~~~l~~~~g~~~--~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~--g-~gv~  451 (470)
T 3i6d_A          377 DLSDNDIINIVLEDLKKVMNING--EPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFE--G-VGIP  451 (470)
T ss_dssp             TSCHHHHHHHHHHHHGGGSCCCS--CCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTS--C-CSHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCC--CceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCC--C-CCHH
Confidence            45678999999999999887532  3334445555665544555431    122333356789999999864  2 2489


Q ss_pred             hHHHHHHHHHHHHHHh
Q 023333          235 GPTLSDRQASAYICNA  250 (283)
Q Consensus       235 ga~~~g~~aA~~il~~  250 (283)
                      +|+.+|..+|++|+..
T Consensus       452 ~a~~sG~~aA~~i~~~  467 (470)
T 3i6d_A          452 DCIDQGKAAVSDALTY  467 (470)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=94.93  E-value=0.025  Score=49.68  Aligned_cols=37  Identities=30%  Similarity=0.340  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            3578999999999999999999999999999998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.88  E-value=0.02  Score=47.77  Aligned_cols=34  Identities=26%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|+|+|..|...|..|.++|++|+++|+++.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998764

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.80  E-value=0.026  Score=48.19  Aligned_cols=38  Identities=34%  Similarity=0.408  Sum_probs=32.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ....++|.|||+|..|...|..|+++|++|+++++++.
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            34468999999999999999999999999999998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.76  E-value=0.03  Score=49.47  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            478999999999999999999999999999987754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.76  E-value=0.024  Score=50.20  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.|||+|..|.+.|..|+++|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            689999999999999999999999999999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.69  E-value=0.027  Score=51.59  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|||+|..|+.+|..|...|.+|+++|+++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457999999999999999999999999999998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.65  E-value=0.037  Score=49.45  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++|.|||+|..|...|..|+++|++|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            468999999999999999999999999999985

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.62  E-value=0.036  Score=47.87  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||+|..|...|..|+++|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.61  E-value=0.026  Score=54.09  Aligned_cols=36  Identities=17%  Similarity=0.345  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            357999999999999999999999999999999886

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.57  E-value=0.033  Score=49.72  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHH-HHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMS-TAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~-aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|.+|++ +|..|.++|++|++.|+.+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            468999999999997 78889999999999998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.56  E-value=0.031  Score=52.31  Aligned_cols=36  Identities=14%  Similarity=0.118  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            578999999999999999999999999999987764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.52  E-value=0.0088  Score=56.14  Aligned_cols=43  Identities=21%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             CCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhccc
Q 023333          210 DQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE  253 (283)
Q Consensus       210 ~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~g~  253 (283)
                      ...+|.++||+||+.+...+ .+|+||+.+|.++|++|+...+.
T Consensus       444 ~l~~p~~~l~fAGe~t~~~~-g~~~GAi~SG~raA~~i~~~l~~  486 (498)
T 2iid_A          444 PLTASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNLASEN  486 (498)
T ss_dssp             HHHCCBTTEEECSGGGSSSS-SCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCCCCcEEEEEcccccCC-cCHHHHHHHHHHHHHHHHHHhcC
Confidence            33568899999999997654 68999999999999999877543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.48  E-value=0.028  Score=53.99  Aligned_cols=36  Identities=17%  Similarity=0.402  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            357999999999999999999999999999999886

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.47  E-value=0.04  Score=48.66  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      .++|+|||+|..|...|..|++.|+  +|+++++++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999999  999999875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.43  E-value=0.047  Score=48.26  Aligned_cols=35  Identities=23%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|..|...|..|++.|++|+++++++.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            47899999999999999999999999999998765

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.43  E-value=0.041  Score=51.01  Aligned_cols=36  Identities=8%  Similarity=-0.079  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-.|..|++.|.+ |+++++.+.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            57899999999999999999999999 9999998755

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.41  E-value=0.034  Score=48.58  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.|||+|..|...|..|+++|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            589999999999999999999999999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.37  E-value=0.049  Score=45.32  Aligned_cols=35  Identities=29%  Similarity=0.478  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|.+.|..|+++|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            56899999999999999999999999999998765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.31  E-value=0.036  Score=52.35  Aligned_cols=36  Identities=31%  Similarity=0.476  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      -+++|.|||.|..|+..|..|+++|++|+++++++.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            368999999999999999999999999999998654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.28  E-value=0.056  Score=50.74  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +.++|.|||+|..|...|..++++|++|+++|+++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            34689999999999999999999999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.24  E-value=0.03  Score=51.88  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~   65 (283)
                      +.++|+|||+|.+|+-+|..|++.  +.+|+++++.+.+
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            357899999999999999999998  8999999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.23  E-value=0.047  Score=50.30  Aligned_cols=36  Identities=33%  Similarity=0.521  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|||+|.+|+.+|..+...|.+|+++|+++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            357899999999999999999999999999998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.21  E-value=0.037  Score=48.52  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.|||+|..|...|..|+++|++|+++++.+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            689999999999999999999999999999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.14  E-value=0.055  Score=49.48  Aligned_cols=36  Identities=25%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|+|+|.+|+.++..+...|.+|+++++.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457999999999999999999999999999998754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.11  E-value=0.051  Score=49.26  Aligned_cols=35  Identities=34%  Similarity=0.481  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|.-|.+.|..|+++|++|+++++++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.08  E-value=0.039  Score=49.08  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|.|||.|..|...|..|++.|++|+++++++.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            346899999999999999999999999999998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.05  E-value=0.046  Score=48.83  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|||+|..|...|..|++.|++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.03  E-value=0.056  Score=47.03  Aligned_cols=34  Identities=29%  Similarity=0.478  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|...|..|++.|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5899999999999999999999999999998765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.01  E-value=0.064  Score=45.42  Aligned_cols=35  Identities=14%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|+|||||-.|...+..|.+.|.+|+|++...
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            46899999999999999999999999999998653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.95  E-value=0.048  Score=48.11  Aligned_cols=36  Identities=33%  Similarity=0.480  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ...++|.|||+|..|-..|..++ +|++|+++|+++.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            34689999999999999999999 9999999998764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=93.94  E-value=0.051  Score=47.78  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|..|...|..|++.|++|+++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999998754

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.88  E-value=0.063  Score=47.66  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .++|+|||+|..|...|..++++|+ +|+++|.++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            4689999999999999999999998 999999875

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.83  E-value=0.063  Score=48.26  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|+|||..|..+|+.+++.|++|+++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            6899999999999999999999999999998765

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.72  E-value=0.056  Score=51.00  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC-CC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~-G~-~V~vlEk~~~   64 (283)
                      ++.++|.|||+|..|+..|..|+++ |+ +|+++++++.
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3457899999999999999999999 99 9999998875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.70  E-value=0.069  Score=47.88  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ..+|+|||+|..|...|..|++.|+ +|+++|.++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            3689999999999999999999998 999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.67  E-value=0.072  Score=49.82  Aligned_cols=35  Identities=29%  Similarity=0.524  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +.++.|||.|..|+..|..|+++|++|+++++++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57999999999999999999999999999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.65  E-value=0.055  Score=50.67  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|+..|..|+++|++|+++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            5899999999999999999999999999998754

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.65  E-value=0.081  Score=44.13  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..|.+.|++|+++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.64  E-value=0.061  Score=47.92  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..+|.|||+|..|...|..|+++|++|+++++.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            5799999999999999999999999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.55  E-value=0.065  Score=48.56  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+|+|+|+|.+|+.++..|+..|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            789999999999999999999999999999865

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.55  E-value=0.059  Score=47.81  Aligned_cols=33  Identities=42%  Similarity=0.558  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|||+|..|...|..|+++|++|+++ +.+
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            578999999999999999999999999999 654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.54  E-value=0.062  Score=47.46  Aligned_cols=32  Identities=38%  Similarity=0.531  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.|||+|..|...|..|+ +|++|+++.+.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            68999999999999999999 999999999875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.52  E-value=0.047  Score=47.77  Aligned_cols=35  Identities=17%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|+|||||-.|+..+..|.+.|.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            35789999999999999999999999999998754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.51  E-value=0.11  Score=45.75  Aligned_cols=35  Identities=29%  Similarity=0.549  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..|.+.|++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            47899999999999999999999999999998754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.42  E-value=0.091  Score=46.99  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      ..+|+|||+|..|...|..++..|+ +|+++|.+..
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            3689999999999999999999999 9999998753

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.38  E-value=0.093  Score=45.48  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++++|+|+|..|.++|..|++.|.+|+|+.+..
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5789999999999999999999999999998753

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.37  E-value=0.05  Score=49.09  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +|.|||+|..|...|..|+++|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999999999999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.36  E-value=0.11  Score=45.80  Aligned_cols=35  Identities=34%  Similarity=0.512  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|..|...|..|.+.|++|+++++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.35  E-value=0.036  Score=43.03  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|||+|..|...|..|.+.|.+|+++++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            5789999999999999999998999999998764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.33  E-value=0.098  Score=46.80  Aligned_cols=37  Identities=22%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      ++..+|+|||+|..|.+.|+.|+..|+ +|+++|..+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            445799999999999999999999999 9999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.32  E-value=0.1  Score=46.53  Aligned_cols=35  Identities=23%  Similarity=0.524  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +..+|+|||+|..|...|..++..|+ +|.++|.+.
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            34689999999999999999999998 999999765

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.23  E-value=0.069  Score=46.85  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|.|||.|..|...|..|+++|++|+++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            468999999999999999999999999999988753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.23  E-value=0.076  Score=47.02  Aligned_cols=35  Identities=14%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      +..+|.|||+|..|...|+.++.+|+  +|.++|.++
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            34789999999999999999999998  899999876

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.16  E-value=0.11  Score=45.33  Aligned_cols=35  Identities=31%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++++|||+|.+|.++|+.|.+.|.+|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999988653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.14  E-value=0.082  Score=47.99  Aligned_cols=35  Identities=29%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|+|+|+|..|+.+|..++..|.+|+++++++.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~  200 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNHK  200 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            47899999999999999999999999999998653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.12  E-value=0.082  Score=47.95  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|.|||.|..|...|..|+++|++|+++++++.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            357899999999999999999999999999998754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.09  E-value=0.067  Score=46.53  Aligned_cols=34  Identities=21%  Similarity=0.458  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|...|..|++.|++|+++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998865

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.06  E-value=0.1  Score=43.49  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ...++|+|.|| |..|...+..|.++|++|+++.+++.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            34678999998 99999999999999999999998754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.03  E-value=0.14  Score=46.49  Aligned_cols=37  Identities=22%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+.++|.|||+|..|...+..+.+.|++|++++..+.
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            3567999999999999999999999999999997654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.00  E-value=0.088  Score=48.00  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|||+|..|+.+|..++..|.+|+++++++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~  202 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINID  202 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            457899999999999999999999999999998653

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=92.98  E-value=0.097  Score=49.44  Aligned_cols=35  Identities=31%  Similarity=0.456  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..++++|++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999998764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=92.97  E-value=0.1  Score=46.05  Aligned_cols=33  Identities=27%  Similarity=0.587  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ++|+|||+|..|...|..++..|+  +|+++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            379999999999999999999999  999999865

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.96  E-value=0.066  Score=47.33  Aligned_cols=30  Identities=43%  Similarity=0.738  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      +|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=92.94  E-value=0.16  Score=45.54  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      +..+|.|||+|..|...|+.++..|+  +|+++|.+.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            56899999999999999999999997  899999754

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=92.93  E-value=0.025  Score=53.01  Aligned_cols=89  Identities=15%  Similarity=0.101  Sum_probs=55.3

Q ss_pred             CCChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCCCC---CCCCCCCCceEEecccccCCCCCcchh
Q 023333          159 PLPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLR---TDQKTPVKNLFLAGSYTKQDYIDSMEG  235 (283)
Q Consensus       159 ~~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~r---p~~~tpv~~l~laGd~t~~~~~~~~eg  235 (283)
                      ..+.+++++.+..++...++...  ...+..+.+...+.....||.....   +...+|+++||+||+++. +  .++++
T Consensus       403 ~~~~ee~~~~v~~~L~~~~g~~~--~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~-g--~~v~g  477 (504)
T 1sez_A          403 KASRTELKEIVTSDLKQLLGAEG--EPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRG-G--LSVGK  477 (504)
T ss_dssp             TCCHHHHHHHHHHHHHHHHCBCS--CCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSS-C--SSHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCC--CCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCC-C--CCHHH
Confidence            45678888888888877776421  1222223333333333333321111   111356899999999975 2  46899


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 023333          236 PTLSDRQASAYICNAGE  252 (283)
Q Consensus       236 a~~~g~~aA~~il~~~g  252 (283)
                      |+.+|..||++|+...+
T Consensus       478 ai~sG~~aA~~il~~l~  494 (504)
T 1sez_A          478 ALSSGCNAADLVISYLE  494 (504)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.92  E-value=0.094  Score=48.48  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|+|||.|..|...|..|.+.|++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46799999999999999999999999999998865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.90  E-value=0.043  Score=51.56  Aligned_cols=35  Identities=26%  Similarity=0.475  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|+|+|-.|...|..|...|++|+|+|+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            47899999999999999999999999999999865

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.85  E-value=0.13  Score=45.88  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      ..+|.|||+|..|...|+.++..|+ +|+++|.+
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            4689999999999999999999999 99999987

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=92.83  E-value=0.066  Score=49.75  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|+..|..|++.|++|+++++++.
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~   34 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3799999999999999999999999999998653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.65  E-value=0.12  Score=45.78  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCC----CcEEEEccCC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRS   63 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G----~~V~vlEk~~   63 (283)
                      +..++|.|||+|..|...|..|.+.|    ++|+++++++
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            44568999999999999999999999    8999999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=92.62  E-value=0.076  Score=44.42  Aligned_cols=35  Identities=26%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEE-EccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDI-YESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~v-lEk~~~   64 (283)
                      .++|.|||+|..|...|..|.+.|++|++ +++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            46899999999999999999999999998 887654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.59  E-value=0.13  Score=48.09  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ...+|.|||.|..||..|..+++.|++|+.+|-++.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            357899999999999999999999999999997654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.56  E-value=0.13  Score=51.09  Aligned_cols=35  Identities=37%  Similarity=0.363  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..++++|++|+++|+++.
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            46899999999999999999999999999998753

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.55  E-value=0.12  Score=45.78  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~   64 (283)
                      .++|.|||.|..|.+.|..|.+.|+  +|+++++++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            3689999999999999999999999  9999998763

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.54  E-value=0.11  Score=49.08  Aligned_cols=38  Identities=18%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++.++|.|||.|..|...|..|+++|++|+++++.+.
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            34568999999999999999999999999999998754

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=92.53  E-value=0.1  Score=47.86  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=32.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC---cEEEEccCC
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGH---EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~---~V~vlEk~~   63 (283)
                      +..+|+|||+ |.+|+.|+..+...|.   .|+++|.+.
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            4679999999 9999999999999998   899999876

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.50  E-value=0.11  Score=47.71  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ...+|+|+|||.+|+.+|..+...|. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            45799999999999999999999998 899999874

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.35  E-value=0.12  Score=45.75  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~   63 (283)
                      .++|.|||.|..|...|..|++.| ++|+++++++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            468999999999999999999999 9999999875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.32  E-value=0.15  Score=45.15  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~   64 (283)
                      ++|+|||+|..|...|..|++.  |++|+++|.++.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            3799999999999999999985  789999998753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.29  E-value=0.11  Score=48.26  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|..|+..|..|++ |++|+++++++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            4689999999999999999998 999999998754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.29  E-value=0.095  Score=49.41  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~   64 (283)
                      .++|.|||.|..|+..|..|+++  |++|+++++++.
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            46899999999999999999998  789999998643

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.28  E-value=0.11  Score=45.09  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++++|+|+|.+|.++|..|.+.|.+|+|+.+..
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999998763

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=92.25  E-value=0.15  Score=47.67  Aligned_cols=36  Identities=25%  Similarity=0.207  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELL--------------------DQGH-EVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~--------------------~~G~-~V~vlEk~~~~   65 (283)
                      .++|+|||+|.+|+-+|..|+                    +.|. +|+|+++.+.+
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            578999999999999999998                    5687 69999987654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=92.23  E-value=0.15  Score=43.44  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC----CcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G----~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..|.++|    ++|+++++++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            368999999999999999999999    79999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.20  E-value=0.13  Score=44.14  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ..+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4789999999999999999999997 799999865

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.15  E-value=0.17  Score=47.73  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +.++|.|||.|..|...|..|+++|++|+++++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.15  E-value=0.098  Score=48.10  Aligned_cols=32  Identities=34%  Similarity=0.487  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.|||+|..|+..|..|++ |++|+++++++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            369999999999999999999 99999999865

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=92.15  E-value=0.095  Score=45.85  Aligned_cols=31  Identities=29%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC-----C-CcEEEEcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ-----G-HEVDIYES   61 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~-----G-~~V~vlEk   61 (283)
                      ++|.|||+|..|...|..|++.     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5899999999999999999999     9 99999987

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.12  E-value=0.13  Score=44.22  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||+|..|...|..|.+.|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   34 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQS   34 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.12  E-value=0.15  Score=41.84  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=30.1

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIG-AGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.||| +|..|...|..|.+.|++|+++++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~   35 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            689999 999999999999999999999998643

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.11  E-value=0.19  Score=44.82  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      +..+|+|||+|..|.+.|+.++..|+ +|.++|..+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            35789999999999999999999988 9999998753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.09  E-value=0.17  Score=45.04  Aligned_cols=34  Identities=35%  Similarity=0.466  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ..+|+|||+|..|...|+.++..++  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999988  899999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.08  E-value=0.17  Score=44.42  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|.|||+|..|..+|..|...|.+|+++++.+
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45789999999999999999999999999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=92.06  E-value=0.17  Score=44.60  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .++++|||+|.+|..+|..|.+.|. +|+|+.+..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4689999999999999999999997 899998864

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.05  E-value=0.11  Score=44.17  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCC
Q 023333           32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~   63 (283)
                      +|.|||+|..|...|..|.+.| ++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999999999 9999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.03  E-value=0.13  Score=46.96  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      ...+|+|+|+|.+|..+|..|...|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            46899999999999999999999998 79999986

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=91.98  E-value=0.18  Score=44.26  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=31.7

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.||| .|..|.+.|..|++.|++|+++++++.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            35899999 999999999999999999999998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=91.92  E-value=0.15  Score=44.32  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +|.|||+|..|...|..|.+.|++|+++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            699999999999999999999999999998754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=91.84  E-value=0.19  Score=44.01  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|.|||.|..|..+|..|...|.+|+++++.+
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            45789999999999999999999999999999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=91.81  E-value=0.2  Score=47.38  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+.+|.|||.|..|...|..|+++|++|+++++.+.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467999999999999999999999999999998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=91.81  E-value=0.2  Score=44.37  Aligned_cols=33  Identities=30%  Similarity=0.429  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ++|+|||+|..|...|+.++..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            689999999999999999999997 899999764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=91.75  E-value=0.16  Score=47.98  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..+.++|+|+|..|..+|..|+..|.+|++.|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35789999999999999999999999999999865

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=91.72  E-value=0.099  Score=46.70  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-------CcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQG-------HEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G-------~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..|+++|       ++|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            358999999999999999999999       89999998765

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=91.67  E-value=0.24  Score=43.05  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH---EVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~---~V~vlEk~~~   64 (283)
                      .++|.|||+|..|.+.|..+.++|+   +|+++++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            4689999999999999999999998   9999998764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=91.66  E-value=0.096  Score=53.66  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus       283 ~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~  319 (965)
T 2gag_A          283 AGARIAVATTNDSAYELVRELAATGGVVAVIDARSSI  319 (965)
T ss_dssp             SCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc
Confidence            3478999999999999999999999999999998764

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=91.65  E-value=0.21  Score=49.66  Aligned_cols=37  Identities=27%  Similarity=0.343  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+-++|.|||+|..|-..|+.++.+|++|+++|.++.
T Consensus       314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          314 QPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             ccccEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            4468999999999999999999999999999998654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=91.64  E-value=0.15  Score=45.02  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      .++|.|||.|..|...|..|++.|+ +|++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999999 99999986

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.63  E-value=0.18  Score=45.03  Aligned_cols=35  Identities=40%  Similarity=0.561  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      +..+|+|||+|..|.+.|+.|+..|+  +++++|.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            35789999999999999999999987  899999754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=91.62  E-value=0.24  Score=42.49  Aligned_cols=35  Identities=34%  Similarity=0.386  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|.|+|..|...+..|.++|++|+++.+++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46899999999999999999999999999988753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.62  E-value=0.16  Score=43.78  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~   64 (283)
                      ++|.|||+|..|.+.|..|++.|+  +|+++++++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~   37 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHH
Confidence            479999999999999999999998  8999998753

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.61  E-value=0.16  Score=50.36  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +.++|.|||+|..|...|..++++|++|+++|+++.
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            346899999999999999999999999999998753

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=91.59  E-value=0.2  Score=42.43  Aligned_cols=34  Identities=15%  Similarity=0.297  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC----cEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH----EVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~----~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|.++|+    +|+++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            589999999999999999999998    9999998754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=91.58  E-value=0.23  Score=44.49  Aligned_cols=37  Identities=24%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ..+..+|+|||+|..|.+.|+.++.+|.  ++.++|.+.
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            3456899999999999999999999987  899999754

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.55  E-value=0.16  Score=45.13  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ++|.|||+|..|...|..|++.|+  +|+++|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            379999999999999999999999  999999874

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.53  E-value=0.18  Score=44.07  Aligned_cols=35  Identities=23%  Similarity=0.201  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .++++|||+|.+|.++|+.|.+.|. +|+|+.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            5789999999999999999999998 8999988754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=91.45  E-value=0.16  Score=50.40  Aligned_cols=37  Identities=27%  Similarity=0.299  Sum_probs=33.2

Q ss_pred             CCCcEEEEC--CCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIG--AGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG--~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..++|+|||  ||.+|+-+|..|++.|.+|+++++.+ +.
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~  565 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LA  565 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TT
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cc
Confidence            357899998  89999999999999999999999987 54

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=91.42  E-value=0.14  Score=44.55  Aligned_cols=35  Identities=29%  Similarity=0.502  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..|.+.|++|+++++++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   38 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEA   38 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999998653

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=91.38  E-value=0.14  Score=46.26  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-------CcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG-------HEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G-------~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|+++|       ++|+++++.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            58999999999999999999999       99999998764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.35  E-value=0.22  Score=44.77  Aligned_cols=35  Identities=31%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|.|||.|..|-+.|..|.+.|++|+++++++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~   42 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRS   42 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=91.26  E-value=0.18  Score=43.69  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=31.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+ |..|...|..|.+.|++|+++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~   46 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPE   46 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58999999 99999999999999999999998753

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.22  E-value=0.27  Score=39.54  Aligned_cols=34  Identities=35%  Similarity=0.520  Sum_probs=30.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|.|| |..|...+..|.++|++|+++.+++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            68999998 99999999999999999999988653

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=91.18  E-value=0.067  Score=45.57  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      +.++|.|||.|..|-+.|..|+++|++|+++++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            4578999999999999999999999999999874

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=91.16  E-value=0.17  Score=43.54  Aligned_cols=33  Identities=27%  Similarity=0.253  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|.+ |++|+++++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            479999999999999999999 999999998754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=91.16  E-value=0.26  Score=43.10  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ..++++|+|+|.+|.++++.|++.|. +|+|+.|..
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            35789999999999999999999998 699998753

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=91.14  E-value=0.18  Score=44.40  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~   63 (283)
                      ++|.|||+|..|...|..|+++|  .+|+++++++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            47999999999999999999999  7899999865

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=91.08  E-value=0.15  Score=44.37  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|.+.|++|.++++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.08  E-value=0.2  Score=46.88  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++|+|||+|..|...+..|.+.|.+|+|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            578999999999999999999999999999875

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=91.07  E-value=0.15  Score=44.87  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=28.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|.+||-|..|...|..|.++|++|+++++++.
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998765

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=91.07  E-value=0.24  Score=51.03  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ..+|+|||||..|+-+|..+++.|. +|+|+++.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3589999999999999999999996 899999876

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=91.05  E-value=0.11  Score=43.68  Aligned_cols=34  Identities=18%  Similarity=0.110  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+++|+|+|..|...|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            5689999999999999999999999 999998764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=91.05  E-value=0.21  Score=46.39  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..+.|+|+|.|..|..+|..|+..|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35799999999999999999999999999999865

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=91.02  E-value=0.29  Score=42.99  Aligned_cols=35  Identities=26%  Similarity=0.475  Sum_probs=30.9

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|+|.|| |..|...+..|.++|++|+++.+.+
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            3568999998 9999999999999999999998853

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=91.01  E-value=0.25  Score=43.91  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      ..++++|+|+|.+|.++|+.|++.|. +|+|+.|.
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            35789999999999999999999998 79999876

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=90.96  E-value=0.23  Score=46.61  Aligned_cols=35  Identities=20%  Similarity=0.427  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|.|||.|..|...|..|+++|++|+++++.+.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~   39 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTS   39 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.95  E-value=0.27  Score=40.10  Aligned_cols=34  Identities=38%  Similarity=0.500  Sum_probs=30.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|.|| |..|...+..|.++|++|+++.+++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG   35 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence            36999996 99999999999999999999998753

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=90.93  E-value=0.17  Score=43.32  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~-V~vlEk~~~   64 (283)
                      .++|.|||+|..|...|..+.+.|++ |.++++++.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~   45 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEE   45 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHH
Confidence            46899999999999999999999999 899998653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=90.92  E-value=0.21  Score=47.27  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +.++|+|||.|..|..+|..|+..|.+|+++|+.+.
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~  308 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPI  308 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999999999999999999999999998654

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=90.86  E-value=0.15  Score=48.12  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHH-HHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMS-TAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~-aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|.+|++ +|..|.++|++|++.|....
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            478999999999997 69999999999999998643

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=90.82  E-value=0.29  Score=42.55  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ..++++|+|+|.+|.++|+.|++.|. +|+|+.|..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            35789999999999999999999996 899998754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=90.77  E-value=0.28  Score=46.20  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|...|..|+++|++|+++++.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=90.75  E-value=0.15  Score=47.76  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|+..|..|+++  |++|+++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            6899999999999999999998  899999998653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=90.71  E-value=0.31  Score=43.59  Aligned_cols=34  Identities=38%  Similarity=0.449  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|.|||.|..|.+.|..|++.|++|+++++.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            4689999999999999999999999999999875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.71  E-value=0.21  Score=42.53  Aligned_cols=34  Identities=29%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|.+.|++|.++++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~   37 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   37 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHH
Confidence            5899999999999999999999999999998653

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=90.69  E-value=0.18  Score=44.34  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ++|+|||+|..|.+.|+.|+..|+  +|+++|..+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            479999999999999999999998  899999865

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=90.68  E-value=0.22  Score=43.34  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++++|+|+|..|.++|..|++.| +|+++.++
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            468999999999999999999999 99999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=90.67  E-value=0.062  Score=49.87  Aligned_cols=85  Identities=9%  Similarity=0.101  Sum_probs=50.9

Q ss_pred             CChHHHHHHhcccccccCCCCccccccccceeeecccccccCCCCCC----CCCCCCCCCCceEEecccccCCCCCcchh
Q 023333          160 LPNDEIIRRVARQVGTLFPLPQGLEVIWSSFVKIAQSLYRGGPGKVP----LRTDQKTPVKNLFLAGSYTKQDYIDSMEG  235 (283)
Q Consensus       160 ~~~~eL~~~l~~~l~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~----~rp~~~tpv~~l~laGd~t~~~~~~~~eg  235 (283)
                      ...+++++.+..++...+|...  ...+..+.+...+.....||...    .++..++ ++++|+|||++.  . ..+++
T Consensus       384 ~~~~~~~~~~~~~l~~~~~~~~--~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~--g-~gv~g  457 (478)
T 2ivd_A          384 QDEDALAALAREELKALAGVTA--RPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLIGNAYK--G-VGLND  457 (478)
T ss_dssp             SCHHHHHHHHHHHHHHHHCCCS--CCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEECSTTTS--C-CSHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCC--CCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEEccCCC--C-CCHHH
Confidence            4577888888888888887532  22222233333332222333210    1111122 689999999963  2 24899


Q ss_pred             HHHHHHHHHHHHHHh
Q 023333          236 PTLSDRQASAYICNA  250 (283)
Q Consensus       236 a~~~g~~aA~~il~~  250 (283)
                      |+.+|..+|++|+..
T Consensus       458 A~~SG~~aA~~i~~~  472 (478)
T 2ivd_A          458 CIRNAAQLADALVAG  472 (478)
T ss_dssp             HHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.65  E-value=0.24  Score=46.64  Aligned_cols=34  Identities=21%  Similarity=0.566  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|+++|++|+++++++.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~   35 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998643

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=90.64  E-value=0.36  Score=44.47  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .|.++|.|+|+|-.|.+.+..+.+.|++|++++..+.
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            3567999999999999999999999999999987644

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=90.64  E-value=0.23  Score=43.06  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++++|||+|..|.+.|..|.+.|.+|+++++++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=90.57  E-value=0.29  Score=43.14  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+.++|+|.|| |..|...+..|.++|++|+++.+.+.
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            34578999998 99999999999999999999988764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=90.54  E-value=0.26  Score=44.03  Aligned_cols=35  Identities=31%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ...+|+|||+|..|.++|+.|+..|+  ++.++|.+.
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            45789999999999999999999887  899999753

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.50  E-value=0.26  Score=42.17  Aligned_cols=35  Identities=14%  Similarity=0.043  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|.|+|..|...+..|.++|++|+++.+++.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            47899999999999999999999999999988764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=90.49  E-value=0.2  Score=47.61  Aligned_cols=37  Identities=19%  Similarity=0.458  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..++|+|||+|.+|+-.|..+++.+.+|+++++.+..
T Consensus       185 ~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            3589999999999999999999999999999987643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=90.44  E-value=0.32  Score=44.07  Aligned_cols=37  Identities=22%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+.++|.|||+|..|.+.+..+.+.|++|++++..+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            3467899999999999999999999999999997654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=90.44  E-value=0.3  Score=42.69  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ..++++|+|+|.+|.++++.|.+.|. +|+|+.|..
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            35789999999999999999999996 899998753

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=90.41  E-value=0.31  Score=41.87  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      +++|||+|.+|.++++.|.+.|. +|+|+.|.+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            89999999999999999999998 8999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=90.33  E-value=0.32  Score=43.22  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      ..++++|+|+|.+|.++|+.|++.|. +|+|+.|.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35789999999999999999999998 79999876

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.32  E-value=0.17  Score=46.23  Aligned_cols=30  Identities=23%  Similarity=0.333  Sum_probs=28.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCcEEEEc
Q 023333           31 LKVAIIGAGLAGMSTAVELLD-QGHEVDIYE   60 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlE   60 (283)
                      ++|.|||+|..|...|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            589999999999999999988 599999999

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=90.03  E-value=0.27  Score=41.86  Aligned_cols=30  Identities=30%  Similarity=0.320  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      +|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            699999999999999999999999999876

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=90.00  E-value=0.28  Score=43.59  Aligned_cols=33  Identities=33%  Similarity=0.460  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ++|+|||+|..|.+.|+.++..|+  +++++|.++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            479999999999999999999887  899999876

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=89.94  E-value=0.27  Score=42.99  Aligned_cols=35  Identities=14%  Similarity=0.141  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ..++++|+|+|.+|.++++.|.+.|. +|+|+.|..
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            35789999999999999999999998 899998764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.92  E-value=0.3  Score=40.06  Aligned_cols=34  Identities=35%  Similarity=0.487  Sum_probs=30.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|.|| |..|...+..|.++|++|+++.+++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ   35 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            36999998 99999999999999999999988643

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.80  E-value=0.4  Score=42.81  Aligned_cols=36  Identities=19%  Similarity=0.167  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|.|||.|..|...|..++..|++|+++++.+.
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            357899999999999999999999999999998764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=89.72  E-value=0.3  Score=44.79  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +.++|+|||+|..|..+|..|...|. +|+++++.+
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            46789999999999999999999998 899998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=89.70  E-value=0.34  Score=43.01  Aligned_cols=35  Identities=34%  Similarity=0.433  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      +..+|+|||+|..|...|+.|+..+.  ++.++|.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34799999999999999999998885  799998653

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=89.67  E-value=0.25  Score=41.30  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhCC-CcEEEEccCCc
Q 023333           30 KLKVAIIGA-GLAGMSTAVELLDQG-HEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~-G~aGL~aA~~l~~~G-~~V~vlEk~~~   64 (283)
                      .++|+|.|| |..|...+..|.++| ++|+++.+++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~   59 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPA   59 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGG
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChh
Confidence            467999995 899999999999999 89999988754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=89.65  E-value=0.36  Score=44.93  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--------------------C-CcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--------------------G-HEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--------------------G-~~V~vlEk~~~~G   66 (283)
                      .++|+|||+|.+|+-+|..|++.                    | .+|+|+++.+.+.
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~  204 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQ  204 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhh
Confidence            57899999999999999999874                    5 4899999877543

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=89.62  E-value=0.2  Score=43.40  Aligned_cols=33  Identities=27%  Similarity=0.535  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||+|..|...|..|.+.|++|++++ ++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            589999999999999999999999999998 543

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=89.51  E-value=0.39  Score=42.27  Aligned_cols=34  Identities=26%  Similarity=0.520  Sum_probs=30.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..++|+|.|| |..|...+..|.++|++|+++.+.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999998 999999999999999999999875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=89.47  E-value=0.41  Score=41.52  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      +.++++|+| +|.+|.++|..|++.|.+|+++.++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            347899999 8999999999999999999998875

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=89.41  E-value=0.36  Score=41.88  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      .++++|||+|.+|.++++.|.+.|. +|+|+.|.
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4689999999999999999999997 79999875

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=89.40  E-value=0.24  Score=46.11  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+.-|||.|..|+..|..|+++|++|+++|+++.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46899999999999999999999999999998754

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=89.39  E-value=0.46  Score=42.74  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      +..+|+|||+ |..|..+|+.+...|.  +|.++|.+.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3578999998 9999999999999885  899999753

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.33  E-value=0.44  Score=41.08  Aligned_cols=36  Identities=28%  Similarity=0.452  Sum_probs=32.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ++|+|.|| |..|-..+..|.++|++|+++-|++..+
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~   37 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG   37 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC
Confidence            47999998 9999999999999999999998876543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=89.21  E-value=0.45  Score=40.70  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++.|||+|..|...|..|.+.|.+|+++++..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            89999999999999999999999999998764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=89.21  E-value=0.36  Score=44.81  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .++|+|||.|..|..+|..|...|.+|+++|..+
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            5789999999999999999999999999999865

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=89.11  E-value=0.38  Score=44.90  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+.|+|||.|..|..+|..|+..|.+|+++|..+.
T Consensus       246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~  281 (464)
T 3n58_A          246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPI  281 (464)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            357899999999999999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-19
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-18
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	8e-07
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	3e-17
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	7e-17
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-16
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	5e-16
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	4e-14
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	6e-14
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	5e-10
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	8e-10
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	1e-09
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-09
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	2e-09
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	2e-09
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	7e-09
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	7e-09
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	5e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	3e-07
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	3e-07
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	3e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	5e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	6e-07
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	1e-06
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-06
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-06
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	6e-06
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	1e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-05
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	3e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	3e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	7e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	7e-05
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	8e-05
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	1e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	1e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	1e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	4e-04
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	5e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	7e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	7e-04
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	8e-04
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	8e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.001
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.001
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.001
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.002
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.002
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.002
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	0.002
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.002
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.002
d1dlja2	196	c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD	0.002
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	0.003
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.003
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.003
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.004
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	0.004
d1lssa_	132	c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus ja	0.004

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 3e-19
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V ++G G++GM+ A  L D G  V + E+R  +GG+  +  ++   ++++G        N
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN 61

Query: 93  NLFRLMKKFFMDVYRQ 108
            + RL K+  ++ Y+ 
Sbjct: 62  RILRLAKELGLETYKV 77

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (202), Expect = 2e-18
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  K     ++G  +  G  
Sbjct: 7   KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF-RKGNYVADLGAMVVTGLG 65

Query: 92  NN-LFRLMKKFFMDVYRQ 108
            N +  + K+  M++ + 
Sbjct: 66  GNPMAVVSKQVNMELAKI 83

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 8e-07
 Identities = 13/64 (20%), Positives = 23/64 (35%)

Query: 187 WSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAY 246
            +        L        P       P+  LF AG +T ++Y  ++ G  LS  + +  
Sbjct: 383 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 442

Query: 247 ICNA 250
           I + 
Sbjct: 443 IADQ 446

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 78.3 bits (191), Expect = 3e-17
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           + VA++G G++G++ A  L  +G +  + ES + +GG VG+     G  +E G + F   
Sbjct: 1   MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTH-ALAGYLVEQGPNSFLDR 59

Query: 91  YNNLFRLMKKFFMD 104
                 L     ++
Sbjct: 60  EPATRALAAALNLE 73

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 77.6 bits (189), Expect = 7e-17
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           +VA+IGAG++G++ A +L   G  V ++E+    GGK+ S   + G   + G +      
Sbjct: 3   RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSV-SQDGLIWDEGANTMTESE 61

Query: 92  NNLFRLMKKF 101
            ++  L+   
Sbjct: 62  GDVTFLIDSL 71

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 76.7 bits (187), Expect = 1e-16
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 16  KCLFPPEPEHY-----------GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64
           +C    + E +             PK  V I+GAG+AG+S A  L   GH+V + E+   
Sbjct: 6   ECFQENDYEEFLEIARNGLKATSNPK-HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 64

Query: 65  IGGKVGSF-IDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDV 105
            GG+V ++  ++ G +  +G       +  +   ++KF + +
Sbjct: 65  PGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL 106

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 74.5 bits (182), Expect = 5e-16
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHI-EMGLHIFFG 89
           K+ I+GAG +G     +L ++GH+V I + R  IGG      D +    +   G HIF  
Sbjct: 4   KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT 63

Query: 90  CYNNLFRLMKKFFMDVYRQLRQ 111
               ++  + K    +    R 
Sbjct: 64  DNETVWNYVNKHAEMMPYVNRV 85

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 69.2 bits (167), Expect = 4e-14
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           +V ++GAG++G+S A  L + G  ++ I E+   IGG++    +  G ++E+G +   G 
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT-NFAGINVELGANWVEGV 60

Query: 91  YNNLFRLMKKFFM 103
                  +     
Sbjct: 61  NGGKMNPIWPIVN 73

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.3 bits (166), Expect = 6e-14
 Identities = 18/79 (22%), Positives = 29/79 (36%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
              I+G+GL G   A EL     +V + E R+ IGG   +   +     + G HIF    
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62

Query: 92  NNLFRLMKKFFMDVYRQLR 110
             ++  +            
Sbjct: 63  KYIWDYVNDLVEFNRFTNS 81

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.1 bits (134), Expect = 5e-10
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 32  KVAIIGAGLAGMSTAVELL--DQGHEVDIYESRSFIGGKVGSFI---DKHGNHIEMGLHI 86
           ++ ++G+G AG  TA  LL       VDIYE +    G V   +        ++      
Sbjct: 3   QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 62

Query: 87  FFGCYNNLFRLMKKFFMDV 105
                   F    +   DV
Sbjct: 63  TARSDRCAFYGNVEVGRDV 81

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 8e-10
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 1/112 (0%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V ++G G+     +  L   G +V   + +   GG+  S              I      
Sbjct: 8   VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 67

Query: 93  NLFRLMKKFFMDVYRQLRQALGFLLRT-PDAGFSCFADLALTSPEDYYGEGQ 143
           + F   + + +D+  +   A G L         + + D    S    + +G+
Sbjct: 68  SKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGK 119

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGH-------EVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
             +AI+G+G +    A  LL            VD+ E      G V S +      I+  
Sbjct: 3   YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSI 62

Query: 84  LHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSC 126
              F            +FF +V        G L    DA    
Sbjct: 63  SKQFEKTA---EDPRFRFFGNVVVGEHVQPGELSERYDAVIYA 102

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 1e-09
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 2/111 (1%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V ++G GL     +  +   G +V   +   + GG+  S         +    +  G   
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-TPLEELYKRF-QLLEGPPE 66

Query: 93  NLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQ 143
            + R        + + L      +        + + D  +      Y  G+
Sbjct: 67  TMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGK 117

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          PPE       ++ V ++GAG +G+     L + G  V + E+   +GG
Sbjct: 4  PPE-------EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 44

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEM 82
          ++A++G  ++G++ A+ L D G +VD+YE         G+ I      +  
Sbjct: 6  RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHY 56

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 53.1 bits (126), Expect = 7e-09
 Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 6/110 (5%)

Query: 29  PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG------SFIDKHGNHIEM 82
            + +V ++G+G+ G+S+A+ L  +G+ V I                  +  +        
Sbjct: 5   SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLT 64

Query: 83  GLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLAL 132
                     + F+   +     +    +      +  D     +     
Sbjct: 65  DGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDIT 114

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 53.5 bits (127), Expect = 7e-09
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 32  KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNH--IEMGLHIF 87
           K+AIIGAG +G+ TA  LL +    +V ++E R   GG V ++     N   +     I 
Sbjct: 6   KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG-VWNYTSTLSNKLPVPSTNPIL 64

Query: 88  FGCYNNLFRLMKKFFMDVYRQLR 110
                     +  +   +YR L+
Sbjct: 65  TTEPIVGPAALPVYPSPLYRDLQ 87

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 50.2 bits (119), Expect = 5e-08
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 6/144 (4%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           ++V +IGAG+ G+STA+ + ++ H V           +   F            +     
Sbjct: 1   MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPS 60

Query: 91  YNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLAL-TSPEDYYGEGQGSLLQC 149
                   ++ F  +   +           + G +  +   L              L   
Sbjct: 61  NPQEANWNQQTFNYLLSHIGSPNA-----ANMGLTPVSGYNLFREAVPDPYWKDMVLGFR 115

Query: 150 VLTPGNPYMPLPNDEIIRRVARQV 173
            LTP    M           +  +
Sbjct: 116 KLTPRELDMFPDYRYGWFNTSLIL 139

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV---GSFIDKHGNHIEMGLHIFFG 89
           V +IG G +G+  A+   ++G  V + +  + +G K+   G       N + +   +   
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64

Query: 90  CYNNLFRLMKKFFM 103
             N  F        
Sbjct: 65  PGNGRFLYSAFSIF 78

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV---GSFIDKHGNHIEMGLHIFF 88
           +  IIGAG AG+  A +L   G  V ++++   IG K+   G       N      H   
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS 65

Query: 89  GCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSC 126
              + +   + ++    +  L    G      + G   
Sbjct: 66  QNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLF 103

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
          K+A++GAG A +S A  L   G+ ++ I+E + ++GG   S I +     ++        
Sbjct: 6  KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 65

Query: 91 YNN 93
           + 
Sbjct: 66 KDL 68

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 32  KVAIIGAGLAGMSTAVEL-LDQGHEVDIYESRSFIGGKVGS--------FIDKHGNHIEM 82
            V ++GAG AG+S A E+  +   +V I E     GG             + K  +    
Sbjct: 35  DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLD 94

Query: 83  GLHIFFGCYNNLFRLMK--KFFMDVYRQLRQALGFLLRT 119
            + + +   +    +     F   +  +L       L  
Sbjct: 95  EIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFN 133

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63
          K +VAIIGAG +G+     L   G +  I E ++
Sbjct: 2  KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.7 bits (112), Expect = 6e-07
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V ++G+G AG S A+   D G +V + E    IGG   + +   G +             
Sbjct: 19  VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN--AKLAAGGMNAAWTDQQKAKKIT 76

Query: 93  NLFRLMKKFFMDVYRQL 109
           +   LM +  M   + +
Sbjct: 77  DSPELMFEDTMKGGQNI 93

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          V IIG+G AG++ AV   D G +V + E     GG
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 60

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEM 82
          + + I GAG+ G+S A+ L   G  +V + ES S I   +G  I+     +E 
Sbjct: 2  IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP-LGVGINIQPAAVEA 53

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 25 HYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
          H+      V ++GAG  GM+   +L  QG +  + ++          
Sbjct: 3  HF-----DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            +IG G+ G + A  L  +     ++ES +  G 
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR 41

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68
          V ++GAG AG + ++     G  V + +   F GG 
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (104), Expect = 6e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKV 69
           V I+GAG +G+S A  +       +V I ES    GG  
Sbjct: 52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS 91

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 33  VAIIGAGLAGMSTAVEL------LDQGHEVDIYESRSFIGGKV--GSFIDKHGNHIEMGL 84
           V I+GAG AG+S A  L       ++   V + E  + IG     G+ +D          
Sbjct: 35  VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPD 94

Query: 85  HIFFGCYNNLFRLMKKFFMD 104
               G   N      +F + 
Sbjct: 95  WKEKGAPLNTPVTEDRFGIL 114

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            +IG GLAG+  AV    +G    +         
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS 42

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
            A++G G  G + A  L  +G  V  ++  +    ++    D+     E          
Sbjct: 3  TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA---QRIKEIQDRGAIIAEGPGLAGTAHP 59

Query: 92 N 92
          +
Sbjct: 60 D 60

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V IIG G AG   A++    G      E R  +GG   +        +          ++
Sbjct: 8   VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKAL----LNNSHLFH 63

Query: 93  NLFRLMKKFFMDVY 106
            +    +K  +DV 
Sbjct: 64  QMHTEAQKRGIDVN 77

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG--------KVGSFIDKHGNHIEMGL 84
           V ++G G  G S A    D+G +V I E    +GG           + +       E+  
Sbjct: 9   VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRH 68

Query: 85  HIFFGCYNNLFRLMKKFFMDVYRQLRQAL 113
               G       L           +   L
Sbjct: 69  LAANGIKYPEPELDIDMLRAYKDGVVSRL 97

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            +IGAG AGM  A+++   G    +         
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEV---DIYESRSFIGGKVGSFIDKHGNHIEMGLHIF 87
          ++++I G G  G   A  L  +GHEV   D+  ++  I              +E  L   
Sbjct: 1  MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQG 58

Query: 88 FGCYNN 93
                
Sbjct: 59 RQTGRL 64

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDI 58
          KV ++G G  G + A  +      +++
Sbjct: 4  KVVVVGGGTGGATAAKYIKLADPSIEV 30

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGS 71
          ++ IIGAG+ G + A EL+ +G + + + + +  +    GS
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLD-QGPLNMPGGS 42

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFI 65
          KV ++G+   G     EL  L    E+  YE   FI
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
          V IIG G  G   A++    G +    E R  +GG   +        +    H++    +
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65

Query: 93 NL 94
          + 
Sbjct: 66 SF 67

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65
          K  V ++GAGLA +S   EL   G++  I       
Sbjct: 3  KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA 38

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 33 VAIIGAGLAGMSTAVELLDQ-----GHEVDIYESRSFI 65
          V I+GAG AG+  A  L +        +V I + RS  
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 12/76 (15%), Positives = 19/76 (25%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V +IGAG  G   A++    G +  + E      GK                 +    Y 
Sbjct: 6   VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYK 65

Query: 93  NLFRLMKKFFMDVYRQ 108
                       +   
Sbjct: 66  FHEAHESFKLHGISTG 81

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 5/149 (3%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-----FIGGKVGSFIDKHGNHIEMGLHI 86
            V+I+GAG  G + +V L+D G+EV I+ +                         + +  
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW 61

Query: 87  FFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSL 146
                  L              +   +  +L      +       L   ++       ++
Sbjct: 62  PEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAV 121

Query: 147 LQCVLTPGNPYMPLPNDEIIRRVARQVGT 175
            +         + +    I R VA+++ T
Sbjct: 122 WRLKHDLRERTVAITGPAIAREVAKRMPT 150

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
           V I+G GLAG+  A  L   G E +I  
Sbjct: 5  NVVIVGTGLAGVEVAFGLRASGWEGNIRL 33

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          V IIG+G AG+S A+ L DQ  +V +        G
Sbjct: 10 VLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG 43

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 37.1 bits (84), Expect = 8e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
          K+ ++G GL G S A +L  +GH +     +     K            ++ L       
Sbjct: 2  KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKII 61

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           V IIG GL G+S     L +G    + ++R               + +   +    G  
Sbjct: 7  NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM---------TPPGLDKLPEAVERHTGSL 57

Query: 92 N 92
          N
Sbjct: 58 N 58

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 5/36 (13%)

Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDI 58
          P H         +IG G A  + A  +  +     +
Sbjct: 2  PSHV-----PFLLIGGGTAAFAAARSIRARDPGARV 32

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
             ++GAG  G   A+     G +V I E +  +GG   +        +    H +    +
Sbjct: 6   TLVVGAGPGGYVAAIRAAQLGQKVTIVE-KGNLGGVCLNVGCIPSKALISASHRYEQAKH 64

Query: 93  NLFRLMKKFFMDVYRQ 108
           +    +K   + +   
Sbjct: 65  SEEMGIKAENVTIDFA 80

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDI 58
          +AI+GAG AG+  A+          I
Sbjct: 8  LAIVGAGGAGLRAAIAAAQANPNAKI 33

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 33 VAIIGAGLAGMSTAVELL----DQGHEVDIYESRSFIGG 67
          + IIG G +G   A E        G +V + E  +    
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK---VGSFIDKHGNHIEMGLHIFFG 89
           + +IG G  GM+ A        +V + E +S +GG    VG    K   +      I   
Sbjct: 4   LIVIGGGSGGMAAARRAARHNAKVALVE-KSRLGGTCVNVGCVPKKIMFNAASVHDILEN 62

Query: 90  CYNNLFRLMKKFFMDVYRQLRQ 111
             +  F     F + +  + R 
Sbjct: 63  SRHYGFDTKFSFNLPLLVERRD 84

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 10/69 (14%), Positives = 22/69 (31%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           + IIG G  G++ A E      +V + +  +         +     ++            
Sbjct: 6   LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAA 65

Query: 93  NLFRLMKKF 101
            L + +K  
Sbjct: 66  LLGQALKDS 74

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
          P      K  +A++GAG AG++ A+    +GH+V ++++ S IGG+ 
Sbjct: 36 PILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF 82

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 8/128 (6%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           ++ I+G+G A  + A+       +  ++E             D                 
Sbjct: 7   RLCIVGSGPAAHTAAIYAARAELKPLLFEG--------WMANDIAPGGQLTTTTDVENFP 58

Query: 92  NNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVL 151
                ++     D +R+  +  G  + T       F+        D       +++  + 
Sbjct: 59  GFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIG 118

Query: 152 TPGNPYMP 159
                + P
Sbjct: 119 AVAKGHEP 126

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
             IG G  G+++       G +  + E    +GG   +        +     I    + 
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALIE-AKELGGTCVNVGCVPKKVMWHAAQIREAIHM 63

Query: 93 N 93
           
Sbjct: 64 Y 64

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEV---DIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           K+A+ G+G  G+S  V LL   +EV   DI  S      KV    +      +  +  + 
Sbjct: 2   KIAVAGSGYVGLSLGV-LLSLQNEVTIVDILPS------KVDKINNGLSPIQDEYIEYYL 54

Query: 89  GCYNNLFRLMKKFFMDV 105
                  +         
Sbjct: 55  KSKQLSIKATLDSKAAY 71

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIY---ESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           K+ ++G G  G      L  QGHEV  +            V +        +      F 
Sbjct: 2   KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61

Query: 89  GCYNNLFRLMKKFFMDVYRQLRQA 112
              + L   +K + +    +   +
Sbjct: 62  ATSDLLLVTLKAWQVSDAVKSLAS 85

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 12/75 (16%), Positives = 23/75 (30%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V I+G+G AG + A+    +G    +   R          I+ + +  +       G   
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 93  NLFRLMKKFFMDVYR 107
                     +D   
Sbjct: 64  VHVDEYDVDVIDSQS 78

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
          + IIG G  G   A+     G    + E    +GG   +        +      F     
Sbjct: 8  LLIIGGGPGGYVAAIRAGQLGIPTVLVE-GQALGGTCLNIGCIPSKALIHVAEQFHQASR 66

Query: 93 N 93
           
Sbjct: 67 F 67

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 8/76 (10%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           K+ I+G+G AG + AV       +  +       G        +     E+         
Sbjct: 7   KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG--------QLTTTTEVENWPGDPND 58

Query: 92  NNLFRLMKKFFMDVYR 107
                LM++      +
Sbjct: 59  LTGPLLMERMHEHATK 74

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 13  EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72
           E  +   P +          V I+GAG +G   A  L++ G+ V + ++   IGG +   
Sbjct: 33  EYRRGWHPEKFRQTKNKD-SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL--N 89

Query: 73  IDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQ 108
                  +    +        + +L+KK        
Sbjct: 90  QVAALPGLGEWSYHRDYRETQITKLLKKNKESQLAL 125

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEV---DIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           + I G G  G + A  L ++GH++   DI +            +  +G+  ++      
Sbjct: 2  YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA 61

Query: 89 GC 90
          G 
Sbjct: 62 GI 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.77
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.64
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.62
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.49
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.49
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.44
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.4
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.37
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.35
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.28
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.2
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.16
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.13
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.99
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.92
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.88
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.83
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.82
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.76
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.75
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.75
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.74
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.74
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.72
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.7
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.69
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.69
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.69
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.68
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.67
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.67
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.67
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.63
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.62
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.57
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.55
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.52
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.48
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.46
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.46
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.45
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.4
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.4
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.37
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.36
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.34
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.34
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.34
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.34
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.32
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.32
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.25
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.22
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.22
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.2
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.19
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.12
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.09
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.09
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.08
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.04
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.02
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.01
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.99
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.99
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.98
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.96
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.94
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.94
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.88
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.87
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.82
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.78
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.77
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.73
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.68
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.64
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.58
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.56
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.56
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.55
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.53
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.5
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.42
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.4
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.26
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.23
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.14
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.05
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.01
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.86
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.81
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.78
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.64
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.63
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.61
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.57
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.54
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.45
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.44
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.13
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.07
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.82
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.63
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.62
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.51
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.43
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.41
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.39
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.26
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.21
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.85
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.83
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.83
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.73
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.65
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.62
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.59
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.54
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.5
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.46
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.41
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.36
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	94.35
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.27
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.26
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.16
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.07
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.05
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.04
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.04
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.98
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.93
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.73
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.59
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.52
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.49
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.43
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.39
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.14
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.06
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.96
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.78
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.77
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.69
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.67
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.56
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.55
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.38
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.34
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.3
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.06
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.96
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.94
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	91.93
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	91.78
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.75
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.73
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.25
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	91.21
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.07
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.06
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.01
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.55
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.43
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.17
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.0
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.87
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.74
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	89.66
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.54
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.52
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	88.96
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.95
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.72
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.11
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.69
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.24
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.18
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.79
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.78
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	85.21
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	85.16
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	84.49
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	84.47
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	84.3
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.26
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	84.19
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.87
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	83.66
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.3
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	82.92
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	82.76
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	82.76
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	82.69
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	82.68
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	82.27
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	82.02
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	81.42
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	80.76
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	80.68
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	80.52
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	80.45
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	80.32
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.04

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-18  Score=151.38  Aligned_cols=72  Identities=29%  Similarity=0.469  Sum_probs=60.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCCh-HHHHHHHH
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN-NLFRLMKK  100 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~-~~~~~~~~  100 (283)
                      .+..||+|||||++||+||+.|+++|++|+|||+++++|||+.++. .+|..+|+|++++++.+. .+.+++++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~-~~g~~~d~G~~~i~~~~~~~~~~l~~~   75 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGGNPMAVVSKQ   75 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCSBTCHHHHHHHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEE-eCCEEEECCCEEECCCCCcHHHHHHHH
Confidence            3457899999999999999999999999999999999999999876 578899999999986543 34444443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.64  E-value=6.8e-17  Score=135.40  Aligned_cols=60  Identities=30%  Similarity=0.510  Sum_probs=53.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCccccccceeecCCCceeeccceeeecCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY   91 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~   91 (283)
                      +||+|||||++||+||+.|+++|+ +|+||||++++||++.+.. ..|..++.|+++++..+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~   61 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGVN   61 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEEEES
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEec-cCCEEEecCCeEEeccc
Confidence            489999999999999999999996 7999999999999998765 57788888888876544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.7e-15  Score=130.58  Aligned_cols=70  Identities=27%  Similarity=0.483  Sum_probs=65.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ||+|||||++||+||++|+++|++|+|||+++++||++.+....+|..++.|+++++..++++.++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l   70 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKEL   70 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHc
Confidence            7999999999999999999999999999999999999998877788889999999999888888888776

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.49  E-value=2.8e-13  Score=115.97  Aligned_cols=51  Identities=29%  Similarity=0.341  Sum_probs=44.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCcee
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI   80 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~   80 (283)
                      .+||+|||||++||+||+.|+++|++|+||||++.+|+++.....+.++..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~   54 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFT   54 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCcccccc
Confidence            589999999999999999999999999999999999988776554555443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.49  E-value=2.1e-14  Score=122.86  Aligned_cols=70  Identities=27%  Similarity=0.446  Sum_probs=64.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      |+|+|||||++||+||++|+++|++|+|||+++++||++.++. ..|..++.|+++++..++++.++++++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~~   71 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSL   71 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEec-cCCEEEecCceEEeCCCHHHHHHHHHh
Confidence            7899999999999999999999999999999999999998876 568889999999999999888887765

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.44  E-value=7.5e-14  Score=119.39  Aligned_cols=70  Identities=27%  Similarity=0.473  Sum_probs=64.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCceeeccceeeecCChHHHHHHHHH
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +||+|||||++||+||++|+++|++|+|||+++++||++.++. .+|..++.|+++++..++.+.+++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~~   70 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRALAAAL   70 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEe-eCCEEEecCceEEecCCHHHHHHHHHh
Confidence            4899999999999999999999999999999999999998876 678889999999999998888877765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.40  E-value=2.3e-13  Score=118.53  Aligned_cols=73  Identities=29%  Similarity=0.440  Sum_probs=64.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeec-CCCceeeccceeeecCChHHHHHHHHH
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      ..++|+|||||++||+||++|+++|++|+|||+++++||++.++.. ..+..++.|++++...++.+.+++++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~  102 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKF  102 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecCccHHHHHHHHHh
Confidence            4579999999999999999999999999999999999999987654 356789999999998888888887765

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.37  E-value=3e-13  Score=120.00  Aligned_cols=72  Identities=29%  Similarity=0.468  Sum_probs=64.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeec--CCCceeeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID--KHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~--~~g~~~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      +++|+|||||++||+||+.|+++|++|+|+|+++++||++.++.+  .++...+.|+|.|+..+..++.++..+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~~~~   75 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKH   75 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccHHHHHHHHHh
Confidence            579999999999999999999999999999999999999988764  345678899999999999888887765

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=3.4e-13  Score=118.62  Aligned_cols=71  Identities=27%  Similarity=0.371  Sum_probs=62.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccceeecCCCce-eeccceeeecCChHHHHHHHHH
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH-IEMGLHIFFGCYNNLFRLMKKF  101 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~~~~~g~~-~~~g~~~~~~~~~~~~~~~~~~  101 (283)
                      .+||+|||||++||+||++|+++|++|+|+|+++++||++.+.. ..|.. .+.|+|.|+..++.++.++.++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~   72 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWDYVNDL   72 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHHHHHTT
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeC-cCCEEEeecCcEEEEecchHHHHHhhcc
Confidence            36999999999999999999999999999999999999998864 45544 5789999999998888887665

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.28  E-value=7.9e-12  Score=105.81  Aligned_cols=43  Identities=23%  Similarity=0.437  Sum_probs=39.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      .+||+|||||++||+||+.|+++|++|+|+||++.+|+++...
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~   44 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAIS   44 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceecc
Confidence            5899999999999999999999999999999999999876543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=7.2e-12  Score=103.64  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=42.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      ...+||+|||||++||+||+.|+++|++|+|||+++.+||++.++
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~   47 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASV   47 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEe
Confidence            357999999999999999999999999999999999999998764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=5e-11  Score=97.05  Aligned_cols=45  Identities=33%  Similarity=0.615  Sum_probs=41.1

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        26 ~~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +....++|+|||||++||+||+.|+++|++|+|||+.+.+||++.
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            334468999999999999999999999999999999999999865

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=1.3e-09  Score=91.22  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .|||+|||||++||+||+++++.|++|+|+|+.+..|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            58999999999999999999999999999999776443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.92  E-value=3.8e-10  Score=94.97  Aligned_cols=67  Identities=24%  Similarity=0.317  Sum_probs=50.0

Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccce
Q 023333            4 SLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~   71 (283)
                      |++..+...+...++.|.... .....++|+|||||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus        24 c~~n~~~~~e~~~~~~p~~~~-~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          24 CTQNATAGEEYRRGWHPEKFR-QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             CSSCTTTTTHHHHCCCSSCCC-CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             eecCcccChHHhcCCCCCccC-cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            333333333333445553332 3345689999999999999999999999999999999999998764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.88  E-value=2.1e-08  Score=85.42  Aligned_cols=43  Identities=26%  Similarity=0.344  Sum_probs=39.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      +..||++|||||++|+.||..+++.|.+|+|+|+.+.+||.+.
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            4479999999999999999999999999999999999999754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=2.9e-09  Score=86.78  Aligned_cols=36  Identities=17%  Similarity=0.221  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ++||+|||||++||+||++|++.|++|+|+|+....
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            589999999999999999999999999999987654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=8.2e-08  Score=76.67  Aligned_cols=39  Identities=28%  Similarity=0.497  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .|||+|||||++||+||+++++.|++|+|+|+.  .||++.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            389999999999999999999999999999974  677765

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.76  E-value=3.1e-09  Score=87.72  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=39.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..|||+|||||++||+||+++++.|++|+|+|+.+.+||.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            369999999999999999999999999999999999999764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=1.3e-09  Score=90.88  Aligned_cols=40  Identities=30%  Similarity=0.358  Sum_probs=37.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-------CcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG-------HEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G-------~~V~vlEk~~~~GG~~~   70 (283)
                      ++|+|||+|+|||+||++|+++|       ++|+|||+.+.+||.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            69999999999999999999988       47999999999999764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.75  E-value=4.5e-09  Score=94.90  Aligned_cols=41  Identities=34%  Similarity=0.472  Sum_probs=37.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh------CCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD------QGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~------~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||||+||++||+.|++      +|++|+||||...+|.++.
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            5899999999999999999997      8999999999999987754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.74  E-value=3.5e-09  Score=85.69  Aligned_cols=41  Identities=34%  Similarity=0.601  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG~~~   70 (283)
                      .++|+|||||++||+||++|+++|+ +|+||||.+.+||...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~   45 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST   45 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhh
Confidence            4799999999999999999999998 5999999999998754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=2.4e-09  Score=88.97  Aligned_cols=42  Identities=31%  Similarity=0.438  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+|||+|||||++||+||.+|++.|++|+|+|+.+.+||.+.
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            369999999999999999999999999999999999999764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.72  E-value=1e-08  Score=86.30  Aligned_cols=39  Identities=28%  Similarity=0.537  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      +..+|+|||||++||++|..|+++|++|+||||++.++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            357899999999999999999999999999999887653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.70  E-value=4.8e-09  Score=91.70  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=39.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...||+|||||++||++|+.|.++|++|+||||++.+||.+.
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~   47 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   47 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccc
Confidence            468999999999999999999999999999999999999764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=5e-09  Score=90.15  Aligned_cols=42  Identities=33%  Similarity=0.429  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~-~G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++||+||++|++ .|++|+|||+++.+||.+..
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            5799999999999999999987 59999999999999998763

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.69  E-value=2.2e-08  Score=85.55  Aligned_cols=40  Identities=23%  Similarity=0.343  Sum_probs=36.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      ..|||+|||||++|+++|++|+++|++|+|+|+.+..++.
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~   41 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTN   41 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence            4799999999999999999999999999999998776544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.69  E-value=7.9e-09  Score=86.36  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ++++|+|||||++||++|+.|+++|++|+|+||....+|
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            467999999999999999999999999999999864443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.68  E-value=4.8e-09  Score=87.42  Aligned_cols=40  Identities=38%  Similarity=0.534  Sum_probs=36.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~~   70 (283)
                      ++|+|||||+|||+||.+|+++  |++|+|||+.+.+||.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceeh
Confidence            4899999999999999999875  789999999999999865

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.67  E-value=6.3e-09  Score=86.79  Aligned_cols=41  Identities=32%  Similarity=0.489  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .|||+|||||++||+||.+|++.|++|+|+|+.+.+||.+.
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            58999999999999999999999999999999999998654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.67  E-value=1.8e-08  Score=85.64  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++||+|||||++|+++|++|+++|++|+||||.+..+|
T Consensus         3 ~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~~g   41 (276)
T d1ryia1           3 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   41 (276)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            358999999999999999999999999999999764443

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.67  E-value=8.9e-09  Score=84.83  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=36.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+|||+|||||++||+||++|++.|++|+|+|+....+++.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~   42 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccc
Confidence            47999999999999999999999999999999987665553

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.63  E-value=1.5e-08  Score=89.20  Aligned_cols=43  Identities=40%  Similarity=0.549  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCccccccce
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~GG~~~~   71 (283)
                      +.++|+|||||+|||+||+.|+++|  .+|+||||++.+||.+..
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~   47 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   47 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence            3478999999999999999998876  599999999999998753

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.62  E-value=1.3e-08  Score=88.21  Aligned_cols=41  Identities=34%  Similarity=0.601  Sum_probs=38.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|++||+||+.|+++|++|+|+||.+..||...
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~   56 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK   56 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence            58999999999999999999999999999999999988654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=1.4e-07  Score=78.76  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC---CcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G---~~V~vlEk~~~~GG~~~   70 (283)
                      .+|+|||||++|++||+++++.|   ++|.|+|+. .+||.+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCceee
Confidence            48999999999999999988765   579999984 5788643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.7e-08  Score=83.16  Aligned_cols=39  Identities=21%  Similarity=0.402  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      +|||+|||||++|++||.+|++.|++|+|+|+. .+||.+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc   40 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTC   40 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeE
Confidence            589999999999999999999999999999995 588865

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.52  E-value=4.1e-08  Score=85.84  Aligned_cols=41  Identities=37%  Similarity=0.541  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..||+|||+|++||+||+.|+++|++|+|+||.+..||...
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~   63 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK   63 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            47999999999999999999999999999999999998754

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.48  E-value=5.4e-08  Score=85.12  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=36.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||+|++||+||++|+++|.+|+|+||.+..||..
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S   44 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCch
Confidence            4799999999999999999999999999999998777653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.46  E-value=4.7e-08  Score=85.45  Aligned_cols=41  Identities=27%  Similarity=0.485  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|++||+||+.|+++|.+|+|+||.+..||...
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~   59 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM   59 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGG
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence            58999999999999999999999999999999999988744

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=4e-08  Score=79.46  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      +.+||+|||||++||.||++|++.|++|+|+|+.+..|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~   43 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL   43 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccc
Confidence            4679999999999999999999999999999988764433

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=5.6e-08  Score=84.76  Aligned_cols=42  Identities=33%  Similarity=0.343  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccccce
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVGS   71 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~~~   71 (283)
                      .+||+|||||++||+||+.|+++  |++|+|+|+++.+||++..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            58999999999999999999964  9999999999999998753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.40  E-value=3.2e-07  Score=73.41  Aligned_cols=37  Identities=32%  Similarity=0.300  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      +.+|+|||||++|+.+|..|++.|.+|+|++..+...
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~   39 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   39 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccc
Confidence            4579999999999999999999999888887655543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=8.3e-08  Score=83.22  Aligned_cols=42  Identities=33%  Similarity=0.405  Sum_probs=35.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ...+||+|||+|++||+||+.+++.| +|+|+||.+..||...
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~   46 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTF   46 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC----
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchH
Confidence            34699999999999999999999888 9999999998887643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.37  E-value=1.6e-07  Score=79.15  Aligned_cols=37  Identities=38%  Similarity=0.564  Sum_probs=34.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGG   67 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~GG   67 (283)
                      .||+|||||++||++|+.|+++|. +|+|+||.+.++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~   39 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   39 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence            689999999999999999999995 8999999988753

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.36  E-value=1.3e-07  Score=80.22  Aligned_cols=39  Identities=26%  Similarity=0.440  Sum_probs=35.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ||++|||||++|+.||.++++.|++|.|+|+. .+||.+.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            79999999999999999999999999999985 5788653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.34  E-value=1.2e-07  Score=78.27  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=36.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~   70 (283)
                      ..+|++|||||++|+.||.++++.|.+|+|+|+. .+||.+.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            3689999999999999999999999999999986 4787643

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.34  E-value=1.6e-07  Score=77.00  Aligned_cols=39  Identities=28%  Similarity=0.530  Sum_probs=35.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||||++||+||.++++.|++|+|+|+.. +||.+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~   41 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVC   41 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCcce
Confidence            5899999999999999999999999999999965 57654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.34  E-value=1.5e-07  Score=80.44  Aligned_cols=36  Identities=36%  Similarity=0.381  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +.+|+|||||++||++|..|+++|++|+|+||.+..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            468999999999999999999999999999998754

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.1e-07  Score=83.65  Aligned_cols=41  Identities=22%  Similarity=0.359  Sum_probs=38.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..+||+|||+|++||+||+.++++|.+|+|+||.+..||..
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            46899999999999999999999999999999999888764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.9e-07  Score=76.72  Aligned_cols=39  Identities=26%  Similarity=0.481  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      +||++|||||++||+||.++++.|++|+|+|+. .+||.+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-~~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CCCCcc
Confidence            699999999999999999999999999999985 456643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.32  E-value=1.4e-06  Score=69.08  Aligned_cols=36  Identities=33%  Similarity=0.404  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+|+|||||++|+.+|..|++.|.+|+|++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            468999999999999999999999999988877654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.25  E-value=3.2e-07  Score=79.91  Aligned_cols=38  Identities=34%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-----hCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELL-----DQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~-----~~G~~V~vlEk~~~~G   66 (283)
                      +.|||+|||||++||++|..|+     ++|++|+||||.+.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            3589999999999999999996     5799999999987653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.22  E-value=5.4e-07  Score=79.10  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=35.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh----CCCcEEEEccCCcccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~----~G~~V~vlEk~~~~GG~~   69 (283)
                      .+||+|||+|++||+||+.|++    +|++|+|+||.+..||..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s   64 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA   64 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence            5899999999999999999975    699999999998877654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.22  E-value=5.1e-07  Score=77.65  Aligned_cols=34  Identities=29%  Similarity=0.621  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .||+|||||++|+++|++|+++|. +|+|+||++.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~   36 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   36 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            489999999999999999999995 7999999853

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=7.1e-07  Score=74.56  Aligned_cols=37  Identities=30%  Similarity=0.429  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-ccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~-~~G   66 (283)
                      .|||||||||+||+.||+++++.|.+++|++++- .+|
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig   39 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM   39 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhc
Confidence            5999999999999999999999999999999873 344

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.19  E-value=5.6e-07  Score=79.02  Aligned_cols=38  Identities=29%  Similarity=0.456  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..+||||||+|++|+.+|.+|+++|++|+|||+.+...
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~   40 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   40 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence            36899999999999999999999999999999975543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.12  E-value=6e-07  Score=74.73  Aligned_cols=38  Identities=18%  Similarity=0.346  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~~G   66 (283)
                      ..|||+|||+|++|++||+++++.|. +|.|+|+....+
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            46999999999999999999999885 699999987643

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.09  E-value=1.7e-06  Score=71.28  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +.|||+|||||++||+||.++++.|. .|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            46999999999999999999999886 689999854

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.09  E-value=1e-05  Score=63.00  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        32 ~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +|+|||||++|+.+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            79999999999999999965 7799999987754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.08  E-value=4.8e-07  Score=74.67  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ++|+|||||++||++|+.|+++|++|+++|+...++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~   36 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA   36 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecc
Confidence            479999999999999999999999988888755443

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.6e-06  Score=75.40  Aligned_cols=41  Identities=20%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCccccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG   70 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~--G~~V~vlEk~~~~GG~~~   70 (283)
                      .+||+|||+|++||+||+.++++  |.+|+|+||.+..||...
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~   47 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTV   47 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHH
Confidence            47999999999999999999986  678999999988877643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.02  E-value=1.8e-06  Score=77.48  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~~   64 (283)
                      ...||+||||+|.+|+..|.+|++.| ++|+|||+.+.
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            44699999999999999999999998 79999999864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.01  E-value=4.1e-06  Score=62.21  Aligned_cols=38  Identities=24%  Similarity=0.361  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++++|||||..|+-+|..+++.|.+|+|+|+.+++..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~   59 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceecc
Confidence            37899999999999999999999999999999998753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.99  E-value=1e-05  Score=60.62  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++|+|||||+.|+-+|..|++.|++|+++|+.+++-.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~   67 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG   67 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc
Confidence            47999999999999999999999999999999987643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.99  E-value=1e-05  Score=60.57  Aligned_cols=40  Identities=23%  Similarity=0.468  Sum_probs=36.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      +.++++|||||+.|+-+|..|+++|.+|+++|+.+++..+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~   68 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR   68 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc
Confidence            3579999999999999999999999999999999887543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.98  E-value=2.2e-06  Score=75.75  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      .++||||||+|++|+.+|.+|+++|++|+|||+.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4689999999999999999999999999999985

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.96  E-value=2.9e-06  Score=74.69  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .||||||+|.+|+.+|.+|+++|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            489999999999999999999999999999953

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=5.8e-06  Score=61.40  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=34.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ++++|||||++|+.+|..+++.|.+|+|+|+.+++.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l   57 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL   57 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhh
Confidence            689999999999999999999999999999998765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.94  E-value=1.6e-05  Score=60.33  Aligned_cols=39  Identities=15%  Similarity=0.376  Sum_probs=35.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .++++|||||++|+.+|..|++.|.+|+|+|+.+++..+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~   73 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER   73 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc
Confidence            579999999999999999999999999999999987544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.88  E-value=8.4e-06  Score=60.32  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=34.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ++++|||||+.|+-+|..+++.|.+|+|+|+.+++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            789999999999999999999999999999998874

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.87  E-value=5.1e-06  Score=73.57  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .||+||||+|.+|+.+|.+|+++|++|+|||+.+
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5899999999999999999999999999999973

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.82  E-value=1e-05  Score=60.15  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            3789999999999999999999999999999988764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=1.8e-05  Score=59.23  Aligned_cols=37  Identities=27%  Similarity=0.473  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||||..|+-+|..|++.|.+|+|+|+++++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            3799999999999999999999999999999998864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.77  E-value=1.1e-05  Score=60.29  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ++++|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            68999999999999999999999999999998875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.73  E-value=1.2e-05  Score=62.75  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~~GG   67 (283)
                      .++|+|||||++|+.+|..|++.+.  +|+|+|+.+....
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~   41 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYT   41 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccc
Confidence            3699999999999999999999874  7999999886543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.4e-05  Score=58.72  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ++++|||||..|+-+|..+++.|.+|+++|+++++-
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            789999999999999999999999999999988763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.64  E-value=3.3e-05  Score=57.37  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      ..+++|||||..|+-.|..+++.|.+|+++|+++++.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            3789999999999999999999999999999988763

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.58  E-value=1.9e-05  Score=70.36  Aligned_cols=35  Identities=34%  Similarity=0.465  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~   63 (283)
                      ..+|+||||+|.+|+..|.+|++.+ ++|+|||+.+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            3599999999999999999999876 7999999975

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.56  E-value=2.9e-05  Score=58.06  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++++|||||..||-+|..+++.|.+|+|+|+.+++.
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            3789999999999999999999999999999998764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=4.6e-05  Score=53.98  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|+|.|.+|+++|..|.++|.+|+++|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            578999999999999999999999999999987653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.55  E-value=5.1e-05  Score=56.16  Aligned_cols=38  Identities=11%  Similarity=0.168  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      +.++|+|||||..|+-.|..|++.|.+|+++|+.+.+.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            35799999999999999999999999999999988764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.53  E-value=5.6e-05  Score=56.72  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      .++++|||||..|+-+|..+++.|.+|+++|+.+++..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~   63 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ   63 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc
Confidence            47899999999999999999999999999999887653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.50  E-value=8e-05  Score=55.50  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+++|||||..|+-.|..+++.|.+|+|+++++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            689999999999999999999999999999753

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.42  E-value=3e-05  Score=68.23  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .||+||||+|.+|+.+|.+|+++ ++|+|||+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            58999999999999999999986 99999999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.40  E-value=6.1e-05  Score=59.38  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +++++|||+|..|+..|..|+++|++|.++++.+.
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            47899999999999999999999999999999754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.26  E-value=9.3e-05  Score=57.70  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .++|+|||+|..|..+|.+|.++|++|+|+|++..-...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~   40 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   40 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHH
Confidence            578999999999999999999999999999998764443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.23  E-value=0.00012  Score=58.52  Aligned_cols=35  Identities=34%  Similarity=0.614  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G--~~V~vlEk~~~~   65 (283)
                      ++|+|||||.+|+.+|..|++.+  .+|+++|+.+.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            47999999999999999999874  579999998765

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.14  E-value=0.00028  Score=51.81  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~---~G~~V~vlEk~~~~G   66 (283)
                      .++++|||||++|+-+|..+++   .|.+|+++|+.+++.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            3789999999999999976554   488999999988764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.05  E-value=0.00037  Score=51.17  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~---G~~V~vlEk~~~~G   66 (283)
                      .++++|||||+.|+-+|..+++.   |.+|+++|+.+++-
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            36899999999999999776654   56799999987753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00035  Score=53.82  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG   67 (283)
                      ++|+|||+|..|...|..|++.|++|+++.+.+....
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~   37 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYC   37 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhh
Confidence            5899999999999999999999999999999876443

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.86  E-value=0.00063  Score=52.18  Aligned_cols=41  Identities=24%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             CCCCcEEEE--CCCHHHHHHHHHHHhCCCcEEEEccCCccccc
Q 023333           28 GPKLKVAII--GAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        28 ~~~~~v~II--G~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~   68 (283)
                      .+...++|+  |||..|+.+|..|+++|++|+|+|+.+.++..
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~   79 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM   79 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            344566666  99999999999999999999999998877543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00064  Score=51.30  Aligned_cols=39  Identities=31%  Similarity=0.255  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHH----hCCCcEEEEccCCccccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELL----DQGHEVDIYESRSFIGGK   68 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~----~~G~~V~vlEk~~~~GG~   68 (283)
                      .++++|||||++|+-+|..|+    +.|.+|+++|+++++..+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~   79 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK   79 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc
Confidence            468999999999999888875    358999999998887543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00046  Score=56.01  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~~   65 (283)
                      ++++++|||||++|+.+|..|++.|.  +|+++++.+..
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            46889999999999999999998876  59999886654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00095  Score=53.43  Aligned_cols=36  Identities=28%  Similarity=0.348  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .-++|+|||+|..|...|+.++++|++|+++|.++.
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            347999999999999999999999999999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.63  E-value=0.0012  Score=52.34  Aligned_cols=37  Identities=24%  Similarity=0.386  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      +..+|+|||+|.+|+.||..+.+.|..|++||.+...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            3479999999999999999999999999999987653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.61  E-value=0.0011  Score=51.76  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..+|+|||+|.+|+.|+..+.+.|.+|++||.+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            357999999999999999999999999999998643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.57  E-value=0.0025  Score=48.96  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      -..+|+|||||-+|+=||..+.+.|. +|+++.+.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            35689999999999999999999986 4889988654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.54  E-value=0.001  Score=49.64  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            4799999999999999999999999999999865

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.45  E-value=0.001  Score=52.83  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      -++|+|||+|..|...|..++.+|++|+++|.++.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            47899999999999999999999999999998653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.44  E-value=0.0012  Score=49.11  Aligned_cols=35  Identities=34%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ++++|+|+|-.|...|..|.+.|++|+++|+++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~   35 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEK   35 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHH
Confidence            57999999999999999999999999999998653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.13  E-value=0.0015  Score=52.04  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|+|||+|.-|.+.|..|+++|++|+++.+++.
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            46899999999999999999999999999997654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.07  E-value=0.0021  Score=51.48  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..||..|..++++|++|+.+|.+..
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            4799999999999999999999999999998764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.82  E-value=0.0039  Score=47.97  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|.+.|..|.++|++|+++++++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~   34 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQS   34 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4799999999999999999999999999998753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.63  E-value=0.0085  Score=45.30  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.||| .|..|.+.|..|.++|++|.++++...
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            47999999 699999999999999999999998653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.62  E-value=0.0046  Score=47.71  Aligned_cols=34  Identities=32%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             CcEEEE-CCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAII-GAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~II-G~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|+|| |+|..|.+.|..|+++|++|+|+.|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            479999 6799999999999999999999998753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.51  E-value=0.0054  Score=48.14  Aligned_cols=31  Identities=42%  Similarity=0.744  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk   61 (283)
                      ++|.|||+|.-|.+.|..|+++|++|+++.+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            4799999999999999999999999999965

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0087  Score=46.38  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +.++|+|+|+|.++.++++.|.+.|.+|.|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            46899999999999999999999999999998754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.41  E-value=0.011  Score=53.76  Aligned_cols=44  Identities=34%  Similarity=0.508  Sum_probs=40.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcccccccee
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~~~~   72 (283)
                      ..+||+|+|-|+.=...|..|++.|.+|+-+|+++.-||.+.++
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl   48 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASF   48 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccce
Confidence            46999999999999888999999999999999999999988765

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.39  E-value=0.015  Score=44.83  Aligned_cols=37  Identities=24%  Similarity=0.510  Sum_probs=32.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           27 GGPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        27 ~~~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ..++.+|.|||+|..|-++|+.|..+|.  ++.++|.++
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3456899999999999999999999997  799999753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.0061  Score=46.23  Aligned_cols=32  Identities=19%  Similarity=0.481  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE   60 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlE   60 (283)
                      ..++|+|||||..|+..|..|.+.|.+|+|+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            46899999999999999999999999999994

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.21  E-value=0.012  Score=42.40  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..++|+|||+|..|...|..|.+.|.+|+|+...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3579999999999999999999999999998753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.85  E-value=0.014  Score=44.77  Aligned_cols=37  Identities=22%  Similarity=0.172  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+..+|+|+|+|+.|+.++..++..|.+|+++|+++.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            3456899999999999999999999999999998754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.83  E-value=0.019  Score=43.80  Aligned_cols=35  Identities=26%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      ++++|.|||+|..|.++|+.++..++ ++.++|.++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            46899999999999999999988886 799998664

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.83  E-value=0.013  Score=44.38  Aligned_cols=35  Identities=31%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      .+++|.|||+|..|.++|+.|+.+|.  ++.++|.+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            35799999999999999999999884  799999754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.73  E-value=0.02  Score=44.43  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +..|.|||-|..|...|..|.++|++|.+|++.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            46899999999999999999999999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=0.017  Score=44.33  Aligned_cols=37  Identities=30%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+...|+|+|+|..|+.++..++..|.+|++++.++.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            3567899999999999999888888999999998764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.62  E-value=0.017  Score=44.69  Aligned_cols=34  Identities=21%  Similarity=0.566  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|-|||-|..|...|.+|.++|++|.++++++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            5799999999999999999999999999998643

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.59  E-value=0.018  Score=44.41  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +.++|+|+|+|.++.++++.|.+.|. +|+|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            45789999999999999999999996 799988754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.02  Score=43.96  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .+...|+|+|+|+.|+.++..+...|. +|++.|+++.
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            345689999999999999999999998 6999998764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.50  E-value=0.012  Score=44.93  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||-|..|...|..|.++|++|.++++++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            4699999999999999999999999999998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.46  E-value=0.021  Score=43.57  Aligned_cols=37  Identities=24%  Similarity=0.153  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+..+|+|+|+|+.|+.++..++..|.+|+++++++.
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            3456899999999999999999889999999987653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.41  E-value=0.019  Score=40.81  Aligned_cols=35  Identities=9%  Similarity=-0.038  Sum_probs=29.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|+|||+|.+|+-.|..|++...+|++.-+.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            46899999999999999999999888876665543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.033  Score=40.03  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ...+|.|+|||=-|.+.|..+.+.|++|+++|..+.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346899999999999999999999999999998754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.022  Score=43.13  Aligned_cols=28  Identities=43%  Similarity=0.500  Sum_probs=25.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcE
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEV   56 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V   56 (283)
                      ..++|+|||||.+|+-+|..+++.|.++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            3579999999999999999999999753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.27  E-value=0.016  Score=44.36  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||-|..|...|.+|.++|++|.++++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            5799999999999999999999999999998754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.26  E-value=0.033  Score=42.29  Aligned_cols=35  Identities=23%  Similarity=0.524  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      |+.+|.|||+|..|-++|+.+...+. ++.++|.++
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            46799999999999999999988875 688888754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.16  E-value=0.017  Score=45.52  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..||..|..++ +|++|+.+|-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            47999999999999998886 5999999998765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.07  E-value=0.033  Score=41.82  Aligned_cols=34  Identities=35%  Similarity=0.466  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      +.+|.|||+|-.|.++|+.+..++.  ++.++|..+
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            3589999999999999999999986  799999765

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.05  E-value=0.027  Score=42.26  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +++|.|||+|..|.++|+.|+.++. ++.++|..+
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            4689999999999999999998876 788898654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.04  E-value=0.04  Score=42.24  Aligned_cols=36  Identities=25%  Similarity=0.535  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      .++.+|.|||+|..|-++|+.|...|+  ++.++|.++
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            345689999999999999999999986  799998753

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.04  E-value=0.026  Score=42.74  Aligned_cols=35  Identities=31%  Similarity=0.570  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ...+|.|||+|-.|.++|+.|..++.  ++.++|..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            35789999999999999999999886  699999654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.98  E-value=0.022  Score=39.91  Aligned_cols=35  Identities=31%  Similarity=0.376  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCCHHHHHH-HHHHHhCCCcEEEEccC
Q 023333           28 GPKLKVAIIGAGLAGMST-AVELLDQGHEVDIYESR   62 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~a-A~~l~~~G~~V~vlEk~   62 (283)
                      ...+++.+||-|.+|+++ |..|.++|++|+-.|..
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            346889999999999998 99999999999998865

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.035  Score=40.66  Aligned_cols=35  Identities=31%  Similarity=0.406  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|||+|-+.+-.|..|++...+|+++-+.+.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            57999999999999999999999999999988764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.92  E-value=0.028  Score=42.46  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ++|.|||+|..|.++|+.|..+|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            689999999999999999998885  688888653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.041  Score=42.06  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+...|+|+|+|..|+.++..++..|.++++++..+.
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            4567899999999999999988889999988887543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.59  E-value=0.039  Score=42.75  Aligned_cols=37  Identities=24%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .+..+|+|+|+|+.|+.+...+...|. +|++.+.++.
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccc
Confidence            345789999999999999999999997 6999998654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.045  Score=40.07  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|-+.+-.|..|++...+|+++-+.+..
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc
Confidence            589999999999999999999998999999876643

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.49  E-value=0.047  Score=40.79  Aligned_cols=33  Identities=30%  Similarity=0.522  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      .+|.|||+|..|.+.|+.|...+.  ++.++|.++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            479999999999999999999885  799999765

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.43  E-value=0.031  Score=43.23  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +.++|+|+|+|.++.++++.|.+.+.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            46789999999999999999998888999998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.39  E-value=0.044  Score=42.33  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .+...|+|+|+|+.|++++..++..|. +|++.+.++
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            456789999999999999999988896 699999765

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.14  E-value=0.047  Score=41.02  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|||.|..|...|..|.++|++|+++++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            4799999999999999999999999999987553

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.06  E-value=0.05  Score=40.84  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      .+|.|||+|..|.++|+.+..+++  ++.++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            579999999999999999999987  788988654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.06  Score=42.27  Aligned_cols=36  Identities=33%  Similarity=0.479  Sum_probs=31.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|+|| |..|...+..|.++|++|+++.|++.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            4578999996 99999999999999999999987653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.78  E-value=0.064  Score=40.78  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~~   64 (283)
                      ++|.|||.|..|.+.|..|.++|+  +|..+|+++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            469999999999999999999996  5777888653

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.77  E-value=0.069  Score=39.33  Aligned_cols=36  Identities=31%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      .++|+|||+|-+.+-.|.+|++.-.+|+++-+.+.+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            689999999999999999999999999999887764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.74  E-value=0.003  Score=51.43  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCccc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~~G   66 (283)
                      .++|+|||||.+|+-+|..|++.|.+|+++++.+.++
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            4789999999999999999999999999999988765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.69  E-value=0.074  Score=41.04  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .+...|+|+|+|+.|++++..+...|. .|++.|.++.
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            345689999999999999999999998 5778887654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.075  Score=39.02  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCH-----------HHHHHHHHHHhCCCcEEEEccCCc
Q 023333           28 GPKLKVAIIGAGL-----------AGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~-----------aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ...++|+|||+|+           ++..|+..|++.|++++++.-+|.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            3468999999997           677888899999999999999886

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.078  Score=41.09  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      ..++|+|+|+|.++.++++.|.+.|. +++|+.|.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            35799999999999999999999987 6888888654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.55  E-value=0.049  Score=41.24  Aligned_cols=36  Identities=25%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +...|+|+|+|..|++++..+...|.+|++.+.++.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            457899999999999999999999999999987553

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.38  E-value=0.061  Score=41.54  Aligned_cols=33  Identities=27%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..++|+|+|+|.++-++++.|.+.| +|.|+-|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            4579999999999999999997766 78888765

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.34  E-value=0.069  Score=43.42  Aligned_cols=36  Identities=31%  Similarity=0.430  Sum_probs=32.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++++|+|+|| |..|-..+..|.++|++|+++.+++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            4689999998 89999999999999999999998654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.30  E-value=0.054  Score=40.57  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ++|.|||+|-.|-++|+.+..+|.  ++.++|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            489999999999999999998875  688998653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.06  E-value=0.12  Score=39.74  Aligned_cols=37  Identities=16%  Similarity=0.186  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .+...|+|+|+|..|+.+...++..|. +|+++|.++.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            445679999999999999999999994 7999998664

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.12  Score=38.63  Aligned_cols=33  Identities=15%  Similarity=0.325  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      -.++|+|.|..|...+..|.+.|.+|+|+|..+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            469999999999999999999999999999875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.94  E-value=0.14  Score=37.19  Aligned_cols=36  Identities=17%  Similarity=0.319  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGL-----------AGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~-----------aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|+|||+|+           ++..|+..|++.|++++++.-+|.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            457899999996           778899999999999999999886

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.93  E-value=0.077  Score=39.85  Aligned_cols=33  Identities=33%  Similarity=0.485  Sum_probs=28.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      ++|.|||+ |..|.++|+.+..++.  ++.++|..+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            47999996 9999999999999985  789998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.084  Score=40.49  Aligned_cols=36  Identities=25%  Similarity=0.197  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+.++|+|=|..|-.+|..++..|.+|+|+|..|.
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            357899999999999999999999999999998763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.75  E-value=0.089  Score=41.37  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .+...|+|+|+|+.|++++..++..|. +|++.+.++
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            345789999999999999998887776 688888764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.73  E-value=0.084  Score=39.30  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      .+|.|||+|-.|.++|+.+..++.  ++.++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            479999999999999999988875  688888653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.094  Score=35.08  Aligned_cols=34  Identities=18%  Similarity=0.030  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|.|+|+|=-|.+.+..+.+.|++|++++..+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5799999999999999999999999999997654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.21  E-value=0.1  Score=39.15  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|.|||+|-.|.+.|..|.+.|++++|+++++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            479999999999999999999999999998764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.07  E-value=0.15  Score=34.90  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHH-HHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMST-AVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~a-A~~l~~~G~~V~vlEk~~   63 (283)
                      ++|-+||-|.+||++ |..|.++|++|.-.|..+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            689999999999976 888999999999998653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.06  E-value=0.088  Score=39.47  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=28.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCC--cEEEEccCC
Q 023333           32 KVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRS   63 (283)
Q Consensus        32 ~v~IIG~-G~aGL~aA~~l~~~G~--~V~vlEk~~   63 (283)
                      +|.|||| |..|.++|+.|..++.  ++.++|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999999886  688888754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.01  E-value=0.13  Score=39.96  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +.++++|.| +|..|..+|..|+++|.+|+++.++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            468899999 58899999999999999999998764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.55  E-value=0.18  Score=38.65  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .+...|+|+|+|+.|++++..++..|. +|++.+.++.
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            456789999999999999999998886 6888887653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.43  E-value=0.11  Score=39.74  Aligned_cols=36  Identities=28%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+.++|+|=|..|-.+|.+|+..|.+|+|.|..|.
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            358999999999999999999999999999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.17  E-value=0.19  Score=38.36  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=29.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCcE-EEEccCC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEV-DIYESRS   63 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~~V-~vlEk~~   63 (283)
                      .+..+|+|+|+|..|++++..++..|.++ ++.+.++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            45678999999999999999888888764 5666554

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.00  E-value=0.16  Score=41.53  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +++|+|+|| |..|...+..|.++|++|+++-|.+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            467999997 99999999999999999999987543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.87  E-value=0.18  Score=38.18  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~   62 (283)
                      ..++|+|||+|-.|...|.+|...|. +++|+-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            46899999999999999999999997 58888875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.74  E-value=0.14  Score=38.34  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCC
Q 023333           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~G~aGL~aA~~l~~~G-~~V~vlEk~~   63 (283)
                      ++|.+||+|..|-+.|..|.++| ++|.++++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            47999999999999998887777 8999998865

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=89.66  E-value=0.097  Score=41.94  Aligned_cols=37  Identities=19%  Similarity=0.092  Sum_probs=30.6

Q ss_pred             CCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHhc
Q 023333          212 KTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAG  251 (283)
Q Consensus       212 ~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~~  251 (283)
                      .|+++++|+||||+.   ..++.+|..+|..||+.|++..
T Consensus       333 ~t~~pglf~aGd~~~---g~~~~~A~~~G~~aA~~i~~~L  369 (373)
T d1seza1         333 EKNLPGLFYAGNHRG---GLSVGKALSSGCNAADLVISYL  369 (373)
T ss_dssp             HHHSTTEEECCSSSS---CSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCC---chhHHHHHHHHHHHHHHHHHHH
Confidence            357899999999964   3367899999999999998763

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.54  E-value=0.13  Score=40.45  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..++|+|||+|-+|.-+|..+++.+.+++++=+.+
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999998877766543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.52  E-value=0.25  Score=37.36  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .+...|+|+|+|..|++++..++..|. +|++.+.++.
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            455679999999999999999988876 6888887664

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.96  E-value=0.23  Score=39.92  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=25.9

Q ss_pred             cEEEE-CC-CHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           32 KVAII-GA-GLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        32 ~v~II-G~-G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +|+|| || +..|++.|..|+++|.+|++.++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            55555 54 5689999999999999999998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.95  E-value=0.34  Score=36.69  Aligned_cols=37  Identities=16%  Similarity=0.128  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~~   64 (283)
                      .+...|+|+|+|..|++++..++..|. +|++.+.++.
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            345679999999999999999999885 7888887654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.72  E-value=0.17  Score=40.89  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +.+|+|||+|..|-.+|..|++.|. +++++|...
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            4799999999999999999999997 688988643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.11  E-value=0.22  Score=37.75  Aligned_cols=35  Identities=26%  Similarity=0.219  Sum_probs=28.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      +...|+|+|+|..|+.++..++..|. .|++.++++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            45689999999999999988887775 677788765

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.69  E-value=0.31  Score=36.19  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=27.2

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHhCCC--cEEEEcc
Q 023333           31 LKVAIIG-AGLAGMSTAVELLDQGH--EVDIYES   61 (283)
Q Consensus        31 ~~v~IIG-~G~aGL~aA~~l~~~G~--~V~vlEk   61 (283)
                      .+|.||| +|..|-++|+.+..++.  ++.++|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            3799999 69999999999999986  6888885

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.24  E-value=0.33  Score=36.56  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=29.9

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhCC-CcEEEEccCCc
Q 023333           28 GPKLKVAIIGA-GLAGMSTAVELLDQG-HEVDIYESRSF   64 (283)
Q Consensus        28 ~~~~~v~IIG~-G~aGL~aA~~l~~~G-~~V~vlEk~~~   64 (283)
                      .+..+|+|+|+ |..|+.++..+...| .+|++.+.++.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchh
Confidence            34568999995 999999998888788 58999997653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.18  E-value=0.4  Score=36.14  Aligned_cols=36  Identities=17%  Similarity=0.197  Sum_probs=29.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 023333           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (283)
Q Consensus        28 ~~~~~v~IIG~G~aGL~aA~~l~~~G~-~V~vlEk~~   63 (283)
                      .+...|+|+|+|..|+++...++..|. .|++.+.++
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            345679999999999999999988886 577777654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.79  E-value=0.56  Score=38.53  Aligned_cols=34  Identities=18%  Similarity=0.048  Sum_probs=27.7

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +.++|-| ++..|.++|..|+++|.+|++.+++..
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            4555555 567899999999999999999998753

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.78  E-value=0.39  Score=38.94  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             CCCcEEEECC-C--HHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGA-G--LAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~-G--~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+.++|.|| |  ..|.+.|..|+++|.+|++..+++..
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~   43 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL   43 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3577888886 3  58999999999999999999987653

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.21  E-value=0.52  Score=37.55  Aligned_cols=35  Identities=14%  Similarity=0.124  Sum_probs=29.4

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .+.|+|.|| +..|.+.|..|+++|.+|.++++...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            467899988 45799999999999999999977543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.16  E-value=0.47  Score=38.40  Aligned_cols=34  Identities=35%  Similarity=0.505  Sum_probs=27.3

Q ss_pred             CcEEEE-CCC-HHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAII-GAG-LAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~II-G~G-~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ++|++| ||+ ..|++.|..|+++|.+|.+.+++..
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            467555 554 5799999999999999999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=84.49  E-value=0.41  Score=38.77  Aligned_cols=37  Identities=22%  Similarity=0.273  Sum_probs=30.1

Q ss_pred             CCCCceEEecccccCCCCCcchhHHHHHHHHHHHHHHh
Q 023333          213 TPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA  250 (283)
Q Consensus       213 tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il~~  250 (283)
                      ++.+++|+|||++... ...+++|+.+|..||.+|..+
T Consensus       331 ~~~g~v~~aGd~~~~~-~~~~~~a~~sG~~aA~~i~~a  367 (370)
T d2iida1         331 ASQGRIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNLA  367 (370)
T ss_dssp             CCBTTEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEecccccCC-CcccHHHHHHHHHHHHHHHhh
Confidence            4568899999998655 345799999999999998665

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=84.47  E-value=1.3  Score=33.83  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..++|.|||.|..|-..|..+...|.+|.++++.+.
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccc
Confidence            368899999999999999999999999999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.30  E-value=0.36  Score=38.79  Aligned_cols=33  Identities=27%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++|+|.|| |..|-..+.+|.++|++|+.+++.+
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            57999998 9999999999999999999998864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.26  E-value=0.57  Score=35.33  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=29.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +..+|+|+|| |..|+.+...+...|.+|++...++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            4568999996 9999998888888999999887654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.19  E-value=0.46  Score=35.96  Aligned_cols=35  Identities=29%  Similarity=0.248  Sum_probs=29.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      +...|+|.|| |..|+++...+...|.+|++.+.++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            4567899896 9999999888888999999888654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.87  E-value=0.87  Score=36.07  Aligned_cols=36  Identities=25%  Similarity=0.196  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--------------------C-CcEEEEccCCc
Q 023333           29 PKLKVAIIGAGLAGMSTAVELLDQ--------------------G-HEVDIYESRSF   64 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~~~--------------------G-~~V~vlEk~~~   64 (283)
                      +.++|+|||+|-.+|=||..|.+.                    | .+|+++.+.+.
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            368999999999999999999873                    5 47999987654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.66  E-value=0.59  Score=34.67  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=26.5

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHh-CC--CcEEEEccCC
Q 023333           31 LKVAIIG-AGLAGMSTAVELLD-QG--HEVDIYESRS   63 (283)
Q Consensus        31 ~~v~IIG-~G~aGL~aA~~l~~-~G--~~V~vlEk~~   63 (283)
                      ++|.||| +|..|-+.|+.|.. .+  .++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4799999 59999999998764 34  5899999754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.30  E-value=0.56  Score=36.97  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=27.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +.++|-|| +..|.+.|..|+++|.+|++.+++..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            44566666 56799999999999999999998754

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=82.92  E-value=0.79  Score=38.26  Aligned_cols=34  Identities=29%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ++.|+|+|| |..|-..+..|.++|++|+++=|++
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            578999996 9999999999999999999997653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.76  E-value=1.1  Score=35.07  Aligned_cols=35  Identities=31%  Similarity=0.419  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVELL--------------------DQGH-EVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~l~--------------------~~G~-~V~vlEk~~   63 (283)
                      ..++|+|||+|-.+|=||..|.                    +.|. +|+++-|..
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            3579999999999999998776                    4564 588887653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.76  E-value=0.79  Score=38.42  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+++|+|.| .|..|-..+..|.++|++|+++++..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            468899997 58899999999999999999998643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.69  E-value=0.64  Score=37.37  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=30.1

Q ss_pred             CCCcEEEECCC---HHHHHHHHHHHhCCCcEEEEccCCcc
Q 023333           29 PKLKVAIIGAG---LAGMSTAVELLDQGHEVDIYESRSFI   65 (283)
Q Consensus        29 ~~~~v~IIG~G---~aGL~aA~~l~~~G~~V~vlEk~~~~   65 (283)
                      ..+.++|.||+   ..|.+.|..|+++|.+|++..+++..
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~   46 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERL   46 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence            35678888864   48999999999999999998877553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.68  E-value=0.87  Score=35.49  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|.|||.|..|...|..|.--|++|..+++...
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccc
Confidence            57899999999999999999999999999998654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.27  E-value=0.59  Score=38.05  Aligned_cols=35  Identities=26%  Similarity=0.196  Sum_probs=27.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      ..+.++|.|| +..|.+.|..|+++|.+|++..++.
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            3456666664 5578899999999999999988764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.02  E-value=0.96  Score=36.11  Aligned_cols=41  Identities=22%  Similarity=0.240  Sum_probs=32.1

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHhCCCcEEEEccCCcccccc
Q 023333           29 PKLKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (283)
Q Consensus        29 ~~~~v~IIG~G-~aGL~aA~~l~~~G~~V~vlEk~~~~GG~~   69 (283)
                      ..+.++|-||+ ..|.+.|..|+++|.+|.+.+++.....++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   47 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL   47 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCc
Confidence            34667777765 479999999999999999999887655443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=0.82  Score=36.40  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=27.5

Q ss_pred             CcEEEECCC-HHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           31 LKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        31 ~~v~IIG~G-~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      +-++|.||+ ..|.+.|..|+++|++|.+.+++..
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            455666665 4799999999999999999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.76  E-value=0.66  Score=36.82  Aligned_cols=35  Identities=17%  Similarity=0.059  Sum_probs=29.2

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG~G-~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      ..+|+|.||. ..|.+.|..|+++|++|++++++..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            3578899875 4699999999999999999988654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.68  E-value=0.69  Score=35.64  Aligned_cols=37  Identities=19%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             CCCCCCCceEEecccccCCCCCcchhHHHHHHHHHHHHH
Q 023333          210 DQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYIC  248 (283)
Q Consensus       210 ~~~tpv~~l~laGd~t~~~~~~~~ega~~~g~~aA~~il  248 (283)
                      ..+|.++++|.+||.+...  ....-|.-.|..||+.|+
T Consensus       178 ~~~T~~~gvyA~GDv~~~~--~~~~~A~~~g~~aa~~i~  214 (223)
T d1ebda1         178 QCRTSVPNIFAIGDIVPGP--ALAHKASYEGKVAAEAIA  214 (223)
T ss_dssp             TCBCSSTTEEECGGGSSSC--CCHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCEEEEeccCCCc--ccHHHHHHHHHHHHHHHc
Confidence            4578999999999996543  334568889999998886

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=80.52  E-value=0.74  Score=35.00  Aligned_cols=35  Identities=34%  Similarity=0.523  Sum_probs=25.0

Q ss_pred             CCCcEEEECCCHHHHHHHHH--HHhC----CCcEEEEccCC
Q 023333           29 PKLKVAIIGAGLAGMSTAVE--LLDQ----GHEVDIYESRS   63 (283)
Q Consensus        29 ~~~~v~IIG~G~aGL~aA~~--l~~~----G~~V~vlEk~~   63 (283)
                      |+.+|.|||||-.|.+.++.  +.+.    +.++.++|.++
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            46899999999998765542  2221    35888998764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.45  E-value=0.92  Score=36.94  Aligned_cols=34  Identities=21%  Similarity=0.114  Sum_probs=29.0

Q ss_pred             CCCcEEEECCC---HHHHHHHHHHHhCCCcEEEEccC
Q 023333           29 PKLKVAIIGAG---LAGMSTAVELLDQGHEVDIYESR   62 (283)
Q Consensus        29 ~~~~v~IIG~G---~aGL~aA~~l~~~G~~V~vlEk~   62 (283)
                      ..+.++|-||+   ..|++.|..|+++|.+|++..+.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            45788999975   68999999999999999988654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.32  E-value=1  Score=35.78  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCC
Q 023333           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (283)
Q Consensus        30 ~~~v~IIG~-G~aGL~aA~~l~~~G~~V~vlEk~~   63 (283)
                      .+.++|.|| +..|.+.|..|+++|.+|.+.+++.
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467888886 4579999999999999999998864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.04  E-value=1  Score=37.39  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCCc
Q 023333           30 KLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRSF   64 (283)
Q Consensus        30 ~~~v~IIG-~G~aGL~aA~~l~~~G~~V~vlEk~~~   64 (283)
                      .++|+|.| .|..|...+..|.++|++|.++++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            48999998 578999999999999999999987543