Citrus Sinensis ID: 023383

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccHHEEHHHHHHcccHHEEEEEHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAAARnvaagdgsrvfrdeeesvngkvkegdesptakrfkserfplthWEFAAFVGVFLLFVTGLFCIYltmpaadygklklprTIADLRLLKDNLAtyaqdypvpfiIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKligrplvswfwpeKLRFFQAEIAKRREKLLNYMLFLRitpslpnlfinlaspivdipfHIFFLATLIGLIPASYITVRAGLalgdlqsvkdlYDFKTLLVLFLIGSviilptllkrkriye
Flexible Loop (DISEMBL)
maaarnvaagdgsrvfrdeeesvngkvkegdesptakrfkserFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLigsviilptllkrkriye
Low Complexity Region (SEG)
MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEfaafvgvfllfvtglfCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE
Disordered region (IsUnstruct)
******************************************RFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK****
Disordered Region (DISOPRED)
*************************************************EFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIY*
Disordered Region (DISEMBL)
***********************************AKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE
Disordered Region (DISPRO)
******************************************RFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRI**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q8L586	287	Uncharacterized membrane	yes	no	1.0	0.986	0.766	1e-127
Q8MXN7	334	Transmembrane protein 41	yes	no	0.830	0.703	0.395	5e-46
Q5U4K5	278	Transmembrane protein 41B	N/A	no	0.918	0.935	0.340	1e-41
Q9VX39	320	Transmembrane protein 41	yes	no	0.791	0.7	0.383	2e-41
Q5ZIL6	269	Transmembrane protein 41B	yes	no	0.795	0.836	0.372	6e-41
Q8K1A5	291	Transmembrane protein 41B	yes	no	0.925	0.900	0.332	8e-41
Q5RBZ8	291	Transmembrane protein 41B	yes	no	0.929	0.903	0.317	1e-40
Q5BJD5	291	Transmembrane protein 41B	yes	no	0.795	0.773	0.359	3e-40
A4II98	278	Transmembrane protein 41B	yes	no	0.795	0.809	0.359	6e-40
Q5FVN2	291	Transmembrane protein 41B	yes	no	0.759	0.738	0.362	1e-39

>sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1

 Score =  453 bits (1166), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/287 (76%), Positives = 249/287 (86%), Gaps = 4/287 (1%)

Query: 1   MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEFAAFVG 56
           MAA RN+    G+R + +DEE        +G   D+SPT KR KSERFPL+ WEFA F  
Sbjct: 1   MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60

Query: 57  VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
           VFL+F TGLFCIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+GYCSTYI
Sbjct: 61  VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120

Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct: 121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180

Query: 177 LRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASY 236
           LRFFQAEIAKRR++LLNYMLFLRITP+LPNLFINL+SPIVDIPFH+FFLATL+GL+PASY
Sbjct: 181 LRFFQAEIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHVFFLATLVGLMPASY 240

Query: 237 ITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 283
           ITVRAGLALGDL+SVKDLYDFKTL VLFLIGS+ I P LLKRKR+YE
Sbjct: 241 ITVRAGLALGDLRSVKDLYDFKTLSVLFLIGSISIFPALLKRKRVYE 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q8MXN7|TM41_DICDI Transmembrane protein 41 homolog OS=Dictyostelium discoideum GN=DDB_G0275543 PE=3 SV=2

 Score =  184 bits (468), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/235 (39%), Positives = 149/235 (63%)

Query: 45  PLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYP 104
           PL  W      GV +  +  LF  + ++       ++LP+   D++LL D L+ Y  D  
Sbjct: 96  PLPLWLLVIVFGVSISVIVFLFLNFPSLSPQHKQLIRLPKNFKDVKLLSDILSQYTDDNY 155

Query: 105 VPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLI 164
              I  +   Y F+Q F IPG++F+S L+G LFG+  G  LV F AT GA+  + +S  I
Sbjct: 156 FIVITTFGVIYTFLQAFSIPGSVFLSFLSGGLFGLKVGFPLVCFVATLGATFSYLISYYI 215

Query: 165 GRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFF 224
           GR LV   +P+KL+ F   ++++R+ LLNY++FLRITP LPN FINLASP++D+P H F 
Sbjct: 216 GRNLVRKLFPDKLKLFSDSLSQKRDNLLNYIVFLRITPFLPNWFINLASPLLDVPIHTFA 275

Query: 225 LATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
           + T IG++PA+++ V+AG+ + ++Q+  D++D K++L +  +  + ILPTL+++K
Sbjct: 276 IGTFIGIMPATFLAVKAGIQIQNIQNPSDIFDLKSILTMAALALLSILPTLIQKK 330

Dictyostelium discoideum (taxid: 44689)

>sp|Q5U4K5|TM41B_XENLA Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 154/270 (57%), Gaps = 10/270 (3%)

Query: 19  EEESVNG----KVKEGDE--SPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTM 72
            E S  G    +   G+E  +P A +  SE            V +FL   + +F +Y   
Sbjct: 4   HERSHTGGHTFQCNHGNEKKAPAAGKVHSEGGS-ARMSLLILVSIFLCAASVMFLVYKYF 62

Query: 73  PA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFM 129
           P     +  K+K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+
Sbjct: 63  PQLSEEELEKIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAYFTTYIFLQTFAIPGSIFL 122

Query: 130 SLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRRE 189
           S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  +  +K   +  ++ + R+
Sbjct: 123 SILSGFLYPFPLALFLVCLCSGLGASFCYLLSYLVGRPVVYKYLSDKAIKWSQQVERHRD 182

Query: 190 KLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQ 249
            L+NY++FLRITP LPN FIN+ SP++++P  +FFL T IG+ P S++ ++AG  L  L 
Sbjct: 183 HLINYIIFLRITPFLPNWFINITSPVINVPLKVFFLGTFIGVAPPSFVAIKAGTTLYQLT 242

Query: 250 SVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
           +  +   + ++++L ++  + ILP + ++K
Sbjct: 243 TAGEAVSWNSVIILMVLAVLSILPAIFQKK 272

Xenopus laevis (taxid: 8355)

>sp|Q9VX39|TM41_DROME Transmembrane protein 41 homolog OS=Drosophila melanogaster GN=CG8408 PE=2 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 3/227 (1%)

Query: 56  GVFLLFVTGLFCIYLTMP---AADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYC 112
           G+F+  +  +  +Y   P   A++   LK+PR I D ++L   L  Y   Y    + G  
Sbjct: 87  GIFVASLVTMCYVYAIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVV 146

Query: 113 STYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWF 172
             Y+F+QTF IPG++F+S+L G L+     L L+ F +  GA+ C+ LS L+GR L+  F
Sbjct: 147 VAYVFLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGRRLIRHF 206

Query: 173 WPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLI 232
           WP+K   +   + + R+ L NYMLFLR+TP LPN FINLASP++ +P HIF L T  G+ 
Sbjct: 207 WPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVIGVPLHIFALGTFCGVA 266

Query: 233 PASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
           P S I ++AG  L  + S  + + + ++ +L       +LP LLK K
Sbjct: 267 PPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMACACASLLPGLLKNK 313

Drosophila melanogaster (taxid: 7227)

>sp|Q5ZIL6|TM41B_CHICK Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1

 Score =  167 bits (424), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 141/228 (61%), Gaps = 3/228 (1%)

Query: 55  VGVFLLFVTGLFCIYLTMP--AADYGK-LKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
           V +F +    +F +Y   P  + + GK +K+PR + D + L   L+ Y   + V  ++ Y
Sbjct: 36  VSIFTIAAFLMFLVYKNFPQLSEEEGKCIKIPRDMDDAKALGKVLSKYKDTFYVQVLVAY 95

Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
            +TY+F+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  
Sbjct: 96  FATYVFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYK 155

Query: 172 FWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGL 231
           +  EK   +  ++ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+
Sbjct: 156 YLTEKAVKWSEQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGV 215

Query: 232 IPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
            P S++ ++AG  L  L +  +   + +L VL ++  + ILP L ++K
Sbjct: 216 APPSFVAIKAGTTLYQLTTAGEAVSWNSLFVLMILAILSILPALFQKK 263

Gallus gallus (taxid: 9031)

>sp|Q8K1A5|TM41B_MOUSE Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=2 SV=1

 Score =  167 bits (423), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 151/271 (55%), Gaps = 9/271 (3%)

Query: 12  GSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLT 71
           G R  R +  +  G     +E P A+   S R  L        V +F      +F +Y  
Sbjct: 21  GDRAVRTQGSAAPGSKDHLNEKPCAEA-GSARTSLL-----ILVSIFSCAAFVMFLVYKN 74

Query: 72  MPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIF 128
            P     +   +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF
Sbjct: 75  FPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIF 134

Query: 129 MSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRR 188
           +S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  +  EK   +  ++ + R
Sbjct: 135 LSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHR 194

Query: 189 EKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDL 248
           E L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L  L
Sbjct: 195 EHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLHQL 254

Query: 249 QSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
            +  +   + ++ +L ++  + ILP + +++
Sbjct: 255 TTAGEAVSWSSVFILMVLALLSILPAIFQKQ 285

Mus musculus (taxid: 10090)

>sp|Q5RBZ8|TM41B_PONAB Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 155/290 (53%), Gaps = 27/290 (9%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAA------- 53
           M A      GDG+   R            G  +P ++ ++ E+     W  A        
Sbjct: 12  MGADHTTPVGDGAAGTR------------GPAAPGSRDYQKEK----SWAEAGSARMSLL 55

Query: 54  -FVGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFII 109
             V +FL     +F +Y   P     +   +K+PR + D + L   L+ Y   + V  ++
Sbjct: 56  ILVSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLV 115

Query: 110 GYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV 169
            Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V
Sbjct: 116 AYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVV 175

Query: 170 SWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLI 229
             +  EK   +  ++ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +
Sbjct: 176 YKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFL 235

Query: 230 GLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
           G+ P S++ ++AG  L    +  +   + ++ +L ++  + ILP + ++K
Sbjct: 236 GVAPPSFVAIKAGTTLHQPTTAGEAVSWNSIFILMILAVLSILPAIFQKK 285

Pongo abelii (taxid: 9601)

>sp|Q5BJD5|TM41B_HUMAN Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 138/228 (60%), Gaps = 3/228 (1%)

Query: 55  VGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
           V +FL     +F +Y   P     +   +K+PR + D + L   L+ Y   + V  ++ Y
Sbjct: 58  VSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAY 117

Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
            +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  
Sbjct: 118 FATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYK 177

Query: 172 FWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGL 231
           +  EK   +  ++ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+
Sbjct: 178 YLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGV 237

Query: 232 IPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
            P S++ ++AG  L  L +  +   + ++ +L ++  + ILP + ++K
Sbjct: 238 APPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKK 285

Homo sapiens (taxid: 9606)

>sp|A4II98|TM41B_XENTR Transmembrane protein 41B OS=Xenopus tropicalis GN=tmem41b PE=2 SV=1

 Score =  164 bits (415), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 140/228 (61%), Gaps = 3/228 (1%)

Query: 55  VGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
           V +FL   + +F +Y   P     +  K+K+PR + D + L   L+ Y   + V  ++ Y
Sbjct: 45  VSIFLCAASIMFLVYKHFPQLSEEEREKIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAY 104

Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
            +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS  + LS L+GRP+V  
Sbjct: 105 FTTYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFSYLLSYLVGRPVVYK 164

Query: 172 FWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGL 231
           +  +K   +  ++ + R+ L+NY++FLRITP LPN FIN+ SP++++P  +FFL T IG+
Sbjct: 165 YLSDKAIKWSQQVERHRDHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFLGTFIGV 224

Query: 232 IPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
            P S++ ++AG  L  L +  +   + ++++L ++  + ILP + ++K
Sbjct: 225 APPSFVAIKAGTTLYQLTTAGEAVSWNSVIILMVLAVLSILPAIFQKK 272

Xenopus tropicalis (taxid: 8364)

>sp|Q5FVN2|TM41B_RAT Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 134/218 (61%), Gaps = 3/218 (1%)

Query: 65  LFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTF 121
           +F +Y   P     +   +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF
Sbjct: 68  MFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTF 127

Query: 122 MIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQ 181
            IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  +  EK   + 
Sbjct: 128 AIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWS 187

Query: 182 AEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRA 241
            ++ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++A
Sbjct: 188 QQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKA 247

Query: 242 GLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
           G  L  L +  +   + ++ +L ++  + ILP + ++K
Sbjct: 248 GTTLYQLTTAGEAVSWNSVFILMILALLSILPAIFQKK 285

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224135539	262	predicted protein [Populus trichocarpa]	0.922	0.996	0.842	1e-126
224146389	262	predicted protein [Populus trichocarpa]	0.922	0.996	0.846	1e-126
30681121	287	SNARE associated Golgi protein [Arabidop	1.0	0.986	0.766	1e-125
356576151	271	PREDICTED: uncharacterized membrane prot	0.957	1.0	0.784	1e-123
225460728	279	PREDICTED: uncharacterized membrane prot	0.971	0.985	0.773	1e-121
297813383	294	hypothetical protein ARALYDRAFT_489810 [	1.0	0.962	0.738	1e-120
449463384	270	PREDICTED: uncharacterized membrane prot	0.954	1.0	0.777	1e-120
449496849	270	PREDICTED: uncharacterized membrane prot	0.954	1.0	0.773	1e-119
297839041	272	hypothetical protein ARALYDRAFT_476324 [	0.932	0.970	0.767	1e-118
18409951	272	SNARE associated Golgi protein family [A	0.932	0.970	0.767	1e-118

>gi|224135539|ref|XP_002327243.1| predicted protein [Populus trichocarpa] gi|222835613|gb|EEE74048.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/267 (84%), Positives = 245/267 (91%), Gaps = 6/267 (2%)

Query: 17  RDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAAD 76
           RDEE     K KE D+SP+AKR K ERFPLT WE AA +GVFL+F TGLFCIYLTMPAAD
Sbjct: 2   RDEE-----KAKE-DDSPSAKRSKFERFPLTRWELAAALGVFLVFSTGLFCIYLTMPAAD 55

Query: 77  YGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL 136
           YGKLKLPR+I+DLRLLKDNLATY  +YP  FI+GYCSTYIFMQTFMIPGTIFMSLLAGAL
Sbjct: 56  YGKLKLPRSISDLRLLKDNLATYVSEYPAQFILGYCSTYIFMQTFMIPGTIFMSLLAGAL 115

Query: 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYML 196
           FG++RGL LVVFNATAGASSCFFLSKLIGRPLV+W WPEK+RFFQ+EIAKR+EKLLNYML
Sbjct: 116 FGIVRGLFLVVFNATAGASSCFFLSKLIGRPLVNWLWPEKMRFFQSEIAKRKEKLLNYML 175

Query: 197 FLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYD 256
           FLR+TP+LPNLFINLASPIVDIPFHIFFLATL+GLIPASYITV+AGLALGDL+SVKDLYD
Sbjct: 176 FLRVTPTLPNLFINLASPIVDIPFHIFFLATLLGLIPASYITVKAGLALGDLKSVKDLYD 235

Query: 257 FKTLLVLFLIGSVIILPTLLKRKRIYE 283
           FKTL VLFLIGS+ I PTLLKRKRIYE
Sbjct: 236 FKTLSVLFLIGSISIFPTLLKRKRIYE 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146389|ref|XP_002325990.1| predicted protein [Populus trichocarpa] gi|222862865|gb|EEF00372.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/267 (84%), Positives = 245/267 (91%), Gaps = 6/267 (2%)

Query: 17  RDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAAD 76
           RDEE     K KE D+SP+AKR K ERFPLT WE AA +GVF +F TGLFCIYLTMPAA+
Sbjct: 2   RDEE-----KAKE-DDSPSAKRAKFERFPLTRWELAAALGVFFVFSTGLFCIYLTMPAAE 55

Query: 77  YGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL 136
           YGKLKLPRTI+DLRLLKDNLATYA +YP  FI+GYCSTYIFMQTFMIPGTIFMSLLAGAL
Sbjct: 56  YGKLKLPRTISDLRLLKDNLATYANEYPAQFILGYCSTYIFMQTFMIPGTIFMSLLAGAL 115

Query: 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYML 196
           FGV+RG+ LVVFNATAGASSCFFLSKLIGRPLV+W WPEKLRFFQAEIAKRR+KLLNYML
Sbjct: 116 FGVVRGIFLVVFNATAGASSCFFLSKLIGRPLVNWLWPEKLRFFQAEIAKRRDKLLNYML 175

Query: 197 FLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYD 256
           FLR+TP+LPNLFINLASPIVDIPFHIFFLATL+GLIPASYITVRAGLALGDL+SVKDLYD
Sbjct: 176 FLRVTPTLPNLFINLASPIVDIPFHIFFLATLLGLIPASYITVRAGLALGDLKSVKDLYD 235

Query: 257 FKTLLVLFLIGSVIILPTLLKRKRIYE 283
           +KTL VLF+IGS+ I PTLLKRKRIYE
Sbjct: 236 YKTLSVLFIIGSISIFPTLLKRKRIYE 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681121|ref|NP_192696.3| SNARE associated Golgi protein [Arabidopsis thaliana] gi|75153817|sp|Q8L586.1|Y4958_ARATH RecName: Full=Uncharacterized membrane protein At4g09580 gi|20465630|gb|AAM20146.1| unknown protein [Arabidopsis thaliana] gi|21281237|gb|AAM45090.1| unknown protein [Arabidopsis thaliana] gi|332657367|gb|AEE82767.1| SNARE associated Golgi protein [Arabidopsis thaliana]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/287 (76%), Positives = 249/287 (86%), Gaps = 4/287 (1%)

Query: 1   MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEFAAFVG 56
           MAA RN+    G+R + +DEE        +G   D+SPT KR KSERFPL+ WEFA F  
Sbjct: 1   MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60

Query: 57  VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
           VFL+F TGLFCIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+GYCSTYI
Sbjct: 61  VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120

Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct: 121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180

Query: 177 LRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASY 236
           LRFFQAEIAKRR++LLNYMLFLRITP+LPNLFINL+SPIVDIPFH+FFLATL+GL+PASY
Sbjct: 181 LRFFQAEIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHVFFLATLVGLMPASY 240

Query: 237 ITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 283
           ITVRAGLALGDL+SVKDLYDFKTL VLFLIGS+ I P LLKRKR+YE
Sbjct: 241 ITVRAGLALGDLRSVKDLYDFKTLSVLFLIGSISIFPALLKRKRVYE 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576151|ref|XP_003556197.1| PREDICTED: uncharacterized membrane protein At4g09580-like [Glycine max]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/283 (78%), Positives = 247/283 (87%), Gaps = 12/283 (4%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLL 60
           MAA RNV A       RDEE+       E D+SP+AK+ KSERFPL  WEFA  V VFL+
Sbjct: 1   MAAPRNVTAT------RDEEKG------EDDDSPSAKKPKSERFPLNTWEFAVAVAVFLV 48

Query: 61  FVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQT 120
           F TGLFCIYLTMP+A Y  LKLPRT++DLRLLK++L+TYA ++P  FI+GYCSTYIFMQT
Sbjct: 49  FSTGLFCIYLTMPSAAYTNLKLPRTLSDLRLLKEHLSTYASNHPAQFILGYCSTYIFMQT 108

Query: 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFF 180
           FMIPGTIFMSLLAGALFGV+RG++LVVFNATAGASSCFFLSKLIGRPLVSW WPEKLRFF
Sbjct: 109 FMIPGTIFMSLLAGALFGVVRGILLVVFNATAGASSCFFLSKLIGRPLVSWLWPEKLRFF 168

Query: 181 QAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
           QAEIAKRR++LLNYMLFLRITP+LPNLFINLASPIVD+PFHIFF ATLIGL+PASYITVR
Sbjct: 169 QAEIAKRRDRLLNYMLFLRITPTLPNLFINLASPIVDVPFHIFFSATLIGLVPASYITVR 228

Query: 241 AGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 283
           AGLALGDL+S+KDLYDFKTL VLFLIG V I PTLLKRKR+YE
Sbjct: 229 AGLALGDLKSIKDLYDFKTLSVLFLIGFVSIAPTLLKRKRVYE 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460728|ref|XP_002271955.1| PREDICTED: uncharacterized membrane protein At4g09580 [Vitis vinifera] gi|296081147|emb|CBI18173.3| unnamed protein product [Vitis vinifera]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/287 (77%), Positives = 245/287 (85%), Gaps = 12/287 (4%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFK----SERFPLTHWEFAAFVG 56
           MAA RN+   DG R+ RDEE +        D+SPT K+        RFPLT WEF   +G
Sbjct: 1   MAAPRNLG-NDGGRL-RDEENA------NEDDSPTTKKPAGVKIDGRFPLTRWEFTVALG 52

Query: 57  VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
           VF+ F  GLFCIYLTMPAA+YG+++LPRTI+DLR+LKD LATYA DYP  FI+GYCSTYI
Sbjct: 53  VFVFFSIGLFCIYLTMPAAEYGRIRLPRTISDLRMLKDQLATYANDYPAQFIMGYCSTYI 112

Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           FMQTFMIPGTIFMSLLAGALFGV+RGL LVVFNATAGASSC+FLSKLIGRPLV+W WPEK
Sbjct: 113 FMQTFMIPGTIFMSLLAGALFGVVRGLFLVVFNATAGASSCYFLSKLIGRPLVNWLWPEK 172

Query: 177 LRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASY 236
           LR FQAEI+KRREKLLNYMLFLRITP+LPNLFINLASPIVDIPFH+FFLATL+GLIPASY
Sbjct: 173 LRLFQAEISKRREKLLNYMLFLRITPTLPNLFINLASPIVDIPFHVFFLATLVGLIPASY 232

Query: 237 ITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 283
           ITVRAGLALGDL+SVKDLYDFKTL VLFLIG + ILPTLLKRKR YE
Sbjct: 233 ITVRAGLALGDLKSVKDLYDFKTLSVLFLIGFISILPTLLKRKRTYE 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813383|ref|XP_002874575.1| hypothetical protein ARALYDRAFT_489810 [Arabidopsis lyrata subsp. lyrata] gi|297320412|gb|EFH50834.1| hypothetical protein ARALYDRAFT_489810 [Arabidopsis lyrata subsp. lyrata]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/294 (73%), Positives = 247/294 (84%), Gaps = 11/294 (3%)

Query: 1   MAAARNVAAGDGS--------RVFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHW 49
           MAA RN+    G         ++ +DEE +      +G   D+S T KR KSERFPL+ W
Sbjct: 1   MAAPRNLTGDGGGRQLDGGGRQLVKDEESAAASSAAKGLLNDDSSTGKRTKSERFPLSRW 60

Query: 50  EFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFII 109
           EFA F  VFL+F TGL CIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+
Sbjct: 61  EFAVFFTVFLVFTTGLLCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFIL 120

Query: 110 GYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV 169
           GYCSTYIFMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV
Sbjct: 121 GYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLV 180

Query: 170 SWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLI 229
           +W WPEKLRFFQAEIAKRR++LLNYMLFLRITP+LPNLFINL+SPIVDIPFH+FFLATL+
Sbjct: 181 NWLWPEKLRFFQAEIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHVFFLATLV 240

Query: 230 GLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 283
           GL+PASYITVRAGLALGDL+SVKDLYDFKTL VLFLIGS+ I P LLKRKR+YE
Sbjct: 241 GLMPASYITVRAGLALGDLRSVKDLYDFKTLSVLFLIGSISIFPALLKRKRVYE 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463384|ref|XP_004149414.1| PREDICTED: uncharacterized membrane protein At4g09580-like [Cucumis sativus]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/283 (77%), Positives = 245/283 (86%), Gaps = 13/283 (4%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLL 60
           MAA+RNV         RDEE     K+KE D+SPTAK+ K ERFPLT WE AA +G+FLL
Sbjct: 1   MAASRNVG-------MRDEE-----KLKE-DDSPTAKKPKFERFPLTKWELAAALGIFLL 47

Query: 61  FVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQT 120
             TGL C+YLTMP+A+Y  +KLPRT++DLR+LKD  A YA+D+P  FI+GYCSTYIFMQT
Sbjct: 48  CSTGLVCVYLTMPSAEYQSVKLPRTLSDLRVLKDLFANYAKDHPAQFILGYCSTYIFMQT 107

Query: 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFF 180
           FMIPGTIFMSLLAGALFGVIRGL+LVVFNATAGASSCFFLSKLIGRPLV W WPEKL+ F
Sbjct: 108 FMIPGTIFMSLLAGALFGVIRGLLLVVFNATAGASSCFFLSKLIGRPLVYWMWPEKLKLF 167

Query: 181 QAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
           QAEIAK REKLLNYMLFLRITP+LPNLFINLASPIVDIPFH+FFLATLIGL+PASYITVR
Sbjct: 168 QAEIAKHREKLLNYMLFLRITPTLPNLFINLASPIVDIPFHVFFLATLIGLVPASYITVR 227

Query: 241 AGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 283
           AGLALG+L+SVKDLYDFKTL VLF IG + ILPTLLKRKR+YE
Sbjct: 228 AGLALGELKSVKDLYDFKTLSVLFFIGFISILPTLLKRKRVYE 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496849|ref|XP_004160242.1| PREDICTED: uncharacterized membrane protein At4g09580-like [Cucumis sativus]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/283 (77%), Positives = 244/283 (86%), Gaps = 13/283 (4%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLL 60
           MAA+RNV         RDEE     K+KE D+SPTAK+ K ERFPLT WE AA +G+FLL
Sbjct: 1   MAASRNVG-------MRDEE-----KLKE-DDSPTAKKPKFERFPLTKWELAAALGIFLL 47

Query: 61  FVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQT 120
             TGL C+YLTMP+A+Y  +KLPRT++DLR+LKD  A YA+ +P  FI+GYCSTYIFMQT
Sbjct: 48  CSTGLVCVYLTMPSAEYQSVKLPRTLSDLRVLKDLFANYAKSHPAQFILGYCSTYIFMQT 107

Query: 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFF 180
           FMIPGTIFMSLLAGALFGVIRGL+LVVFNATAGASSCFFLSKLIGRPLV W WPEKL+ F
Sbjct: 108 FMIPGTIFMSLLAGALFGVIRGLLLVVFNATAGASSCFFLSKLIGRPLVYWMWPEKLKLF 167

Query: 181 QAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
           QAEIAK REKLLNYMLFLRITP+LPNLFINLASPIVDIPFH+FFLATLIGL+PASYITVR
Sbjct: 168 QAEIAKHREKLLNYMLFLRITPTLPNLFINLASPIVDIPFHVFFLATLIGLVPASYITVR 227

Query: 241 AGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 283
           AGLALG+L+SVKDLYDFKTL VLF IG + ILPTLLKRKR+YE
Sbjct: 228 AGLALGELKSVKDLYDFKTLSVLFFIGFISILPTLLKRKRVYE 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839041|ref|XP_002887402.1| hypothetical protein ARALYDRAFT_476324 [Arabidopsis lyrata subsp. lyrata] gi|297333243|gb|EFH63661.1| hypothetical protein ARALYDRAFT_476324 [Arabidopsis lyrata subsp. lyrata]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/267 (76%), Positives = 241/267 (90%), Gaps = 3/267 (1%)

Query: 17  RDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAAD 76
           RDEE    G + + D+SP+ KR K +RFPL+ WE A  +GVFL+F +GL CIY+TMPAA+
Sbjct: 9   RDEEL---GVISDDDDSPSGKRSKLDRFPLSRWELAVSLGVFLVFSSGLCCIYMTMPAAE 65

Query: 77  YGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL 136
           +GKLKLPR+IADLRLLKDNLA YA +YP  F++GYC+TYIFMQTFMIPGTIFMSLLAGAL
Sbjct: 66  FGKLKLPRSIADLRLLKDNLANYANEYPAQFVLGYCATYIFMQTFMIPGTIFMSLLAGAL 125

Query: 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYML 196
           FGV +G++LVVFNATAGA+SCFFLSKLIGRPL++W WP+KLRFFQAEI+KRR+KLLNYML
Sbjct: 126 FGVFKGVVLVVFNATAGATSCFFLSKLIGRPLITWLWPDKLRFFQAEISKRRDKLLNYML 185

Query: 197 FLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYD 256
           FLRITP+LPNLFINLASPIVD+PFH+FFLATLIGL+PA+YITVRAGLA+GDL+SVKDLYD
Sbjct: 186 FLRITPTLPNLFINLASPIVDVPFHVFFLATLIGLVPAAYITVRAGLAIGDLKSVKDLYD 245

Query: 257 FKTLLVLFLIGSVIILPTLLKRKRIYE 283
           FKTL VLFLIG + ILPT+LKRK+I E
Sbjct: 246 FKTLSVLFLIGFISILPTILKRKKIVE 272

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409951|ref|NP_565028.1| SNARE associated Golgi protein family [Arabidopsis thaliana] gi|12324535|gb|AAG52221.1|AC021665_4 unknown protein; 51119-52286 [Arabidopsis thaliana] gi|18700127|gb|AAL77675.1| At1g71940/F17M19_9 [Arabidopsis thaliana] gi|20453395|gb|AAM19936.1| At1g71940/F17M19_9 [Arabidopsis thaliana] gi|21593331|gb|AAM65280.1| unknown [Arabidopsis thaliana] gi|332197134|gb|AEE35255.1| SNARE associated Golgi protein family [Arabidopsis thaliana]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/267 (76%), Positives = 241/267 (90%), Gaps = 3/267 (1%)

Query: 17  RDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAAD 76
           RDEE    G + + D+SP+ KR K +RFPL+ WE A  +GVFL+F +GL CIY+TMPAA+
Sbjct: 9   RDEEL---GVISDDDDSPSGKRSKLDRFPLSRWELAVSLGVFLVFSSGLCCIYMTMPAAE 65

Query: 77  YGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL 136
           +GKLKLPR++ADLRLLKDNLA YA +YP  F++GYC+TYIFMQTFMIPGTIFMSLLAGAL
Sbjct: 66  FGKLKLPRSLADLRLLKDNLANYANEYPAQFVLGYCATYIFMQTFMIPGTIFMSLLAGAL 125

Query: 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYML 196
           FGV +G++LVVFNATAGA+SCFFLSKLIGRPL++W WP+KLRFFQAEI+KRR+KLLNYML
Sbjct: 126 FGVFKGVVLVVFNATAGATSCFFLSKLIGRPLITWLWPDKLRFFQAEISKRRDKLLNYML 185

Query: 197 FLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYD 256
           FLRITP+LPNLFINLASPIVD+PFH+FFLATLIGLIPA+YITVRAGLA+GDL+SVKDLYD
Sbjct: 186 FLRITPTLPNLFINLASPIVDVPFHVFFLATLIGLIPAAYITVRAGLAIGDLKSVKDLYD 245

Query: 257 FKTLLVLFLIGSVIILPTLLKRKRIYE 283
           FKTL VLFLIG + ILPT+LKRK+I E
Sbjct: 246 FKTLSVLFLIGFISILPTILKRKKIVE 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2136927	287	AT4G09580 "AT4G09580" [Arabido	1.0	0.986	0.728	1e-109
TAIR|locus:2129485	264	AT4G17790 "AT4G17790" [Arabido	0.837	0.897	0.607	8.7e-79
DICTYBASE|DDB_G0275543	334	DDB_G0275543 "Transmembrane pr	0.706	0.598	0.43	5e-44
UNIPROTKB|Q5ZIL6	269	TMEM41B "Transmembrane protein	0.749	0.788	0.381	3.3e-40
ZFIN|ZDB-GENE-061215-138	282	tmem41b "transmembrane protein	0.710	0.712	0.402	6.8e-40
FB|FBgn0030850	320	stas "Stasimon" [Drosophila me	0.749	0.662	0.396	1.8e-39
UNIPROTKB|Q5BJD5	291	TMEM41B "Transmembrane protein	0.706	0.687	0.38	4.8e-39
RGD|1310870	291	Tmem41b "transmembrane protein	0.706	0.687	0.38	6.1e-39
MGI|MGI:1289225	291	Tmem41b "transmembrane protein	0.706	0.687	0.375	1.6e-38
ZFIN|ZDB-GENE-040426-2050	278	tmem41ab "transmembrane protei	0.710	0.723	0.393	1.9e-37

TAIR|locus:2136927 AT4G09580 "AT4G09580" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 209/287 (72%), Positives = 237/287 (82%)

Query:     1 MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEXXXXXX 56
             MAA RN+    G+R + +DEE        +G   D+SPT KR KSERFPL+ WE      
Sbjct:     1 MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60

Query:    57 XXXXXXXXXXCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
                       CIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+GYCSTYI
Sbjct:    61 VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120

Query:   117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
             FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct:   121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180

Query:   177 LRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASY 236
             LRFFQAEIAKRR++LLNYMLFLRITP+LPNLFINL+SPIVDIPFH+FFLATL+GL+PASY
Sbjct:   181 LRFFQAEIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHVFFLATLVGLMPASY 240

Query:   237 ITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 283
             ITVRAGLALGDL+SVKDLYDFKTL VLFLIGS+ I P LLKRKR+YE
Sbjct:   241 ITVRAGLALGDLRSVKDLYDFKTLSVLFLIGSISIFPALLKRKRVYE 287

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2129485 AT4G17790 "AT4G17790" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 144/237 (60%), Positives = 186/237 (78%)

Query:    44 FPLTHWEXXXXXXXXXXXXXXXXCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDY 103
             + L+ WE                C+YLTMP +DY  LKLPR + DL++L+DNL  Y  DY
Sbjct:    27 YSLSFWEVTAASGVVLGFILGLVCVYLTMPQSDYSFLKLPRNLEDLQILRDNLEIYTSDY 86

Query:   104 PVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKL 163
              V  ++GYC  Y+FMQTFMIPGT+FMSLLAGALFGV++G+ LVV  ATAGASSC+FLSKL
Sbjct:    87 TVQVLVGYCLVYVFMQTFMIPGTVFMSLLAGALFGVVKGMALVVSTATAGASSCYFLSKL 146

Query:   164 IGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIF 223
             IGRPL+   WP+KL FFQ ++A+R+++LLNYMLFLR+TP+LPN FIN+ASPIVD+P+HIF
Sbjct:   147 IGRPLLFSLWPDKLVFFQDQVARRKDRLLNYMLFLRLTPTLPNTFINVASPIVDVPYHIF 206

Query:   224 FLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKR 280
             FLAT IGLIPA+++TVRAGLALG+L+S+ DLYDF ++  L LIG + + PTL+ +K+
Sbjct:   207 FLATFIGLIPAAFVTVRAGLALGELKSLGDLYDFSSMATLCLIGVLSVTPTLIGKKQ 263

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0275543 DDB_G0275543 "Transmembrane protein 41B" [Dictyostelium discoideum (taxid:44689)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 86/200 (43%), Positives = 137/200 (68%)

Query:    80 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGV 139
             ++LP+   D++LL D L+ Y  D     I  +   Y F+Q F IPG++F+S L+G LFG+
Sbjct:   131 IRLPKNFKDVKLLSDILSQYTDDNYFIVITTFGVIYTFLQAFSIPGSVFLSFLSGGLFGL 190

Query:   140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLR 199
               G  LV F AT GA+  + +S  IGR LV   +P+KL+ F   ++++R+ LLNY++FLR
Sbjct:   191 KVGFPLVCFVATLGATFSYLISYYIGRNLVRKLFPDKLKLFSDSLSQKRDNLLNYIVFLR 250

Query:   200 ITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKT 259
             ITP LPN FINLASP++D+P H F + T IG++PA+++ V+AG+ + ++Q+  D++D K+
Sbjct:   251 ITPFLPNWFINLASPLLDVPIHTFAIGTFIGIMPATFLAVKAGIQIQNIQNPSDIFDLKS 310

Query:   260 LLVLFLIGSVIILPTLLKRK 279
             +L +  +  + ILPTL+++K
Sbjct:   311 ILTMAALALLSILPTLIQKK 330

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q5ZIL6 TMEM41B "Transmembrane protein 41B" [Gallus gallus (taxid:9031)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 82/215 (38%), Positives = 135/215 (62%)

Query:    68 IYLTMP--AADYGK-LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIP 124
             +Y   P  + + GK +K+PR + D + L   L+ Y   + V  ++ Y +TY+F+QTF IP
Sbjct:    49 VYKNFPQLSEEEGKCIKIPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYVFLQTFAIP 108

Query:   125 GTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEI 184
             G+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  +  EK   +  ++
Sbjct:   109 GSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSEQV 168

Query:   185 AKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLA 244
              + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  
Sbjct:   169 ERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTT 228

Query:   245 LGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
             L  L +  +   + +L VL ++  + ILP L ++K
Sbjct:   229 LYQLTTAGEAVSWNSLFVLMILAILSILPALFQKK 263

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-061215-138 tmem41b "transmembrane protein 41B" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 81/201 (40%), Positives = 128/201 (63%)

Query:    79 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFG 138
             K+K+P+ + D + L   L+ Y   Y    ++ Y +TYIF+QTF IPG+IF+S+L+G L+ 
Sbjct:    76 KIKIPKDMEDAKALGTVLSKYKDTYYTQVLLAYFATYIFLQTFAIPGSIFLSILSGYLYP 135

Query:   139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFL 198
                 L LV   +  GAS C+ LS L+GRP+V  +  E+ + +  ++ K RE L+NY++FL
Sbjct:   136 FPLALFLVCLCSGLGASFCYMLSYLVGRPMVYKYLTERAQKWSQQVDKHREHLINYIIFL 195

Query:   199 RITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFK 258
             RITP LPN FIN+ SP++++P  +FFL T +G+ P S++ + AG  L  L +  +   + 
Sbjct:   196 RITPFLPNWFINITSPVINVPLGVFFLGTFLGVAPPSFVAINAGTTLYKLTTAGEAVSWN 255

Query:   259 TLLVLFLIGSVIILPTLLKRK 279
             +LLVL ++  V ILP   ++K
Sbjct:   256 SLLVLGVLAVVSILPVCFQKK 276

GO:0003674 "molecular_function" evidence=ND

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0030850 stas "Stasimon" [Drosophila melanogaster (taxid:7227)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 84/212 (39%), Positives = 125/212 (58%)

Query:    68 IYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTI 127
             I+  + A++   LK+PR I D ++L   L  Y   Y    + G    Y+F+QTF IPG++
Sbjct:   102 IFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYVFLQTFAIPGSL 161

Query:   128 FMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKR 187
             F+S+L G L+     L L+ F +  GA+ C+ LS L+GR L+  FWP+K   +   + + 
Sbjct:   162 FLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGRRLIRHFWPKKTSEWSKHVEEY 221

Query:   188 REKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGD 247
             R+ L NYMLFLR+TP LPN FINLASP++ +P HIF L T  G+ P S I ++AG  L  
Sbjct:   222 RDSLFNYMLFLRMTPILPNWFINLASPVIGVPLHIFALGTFCGVAPPSVIAIQAGKTLQK 281

Query:   248 LQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279
             + S  + + + ++ +L       +LP LLK K
Sbjct:   282 MTSSSEAFSWTSMGILMACACASLLPGLLKNK 313

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0032224 "positive regulation of synaptic transmission, cholinergic" evidence=IMP

UNIPROTKB|Q5BJD5 TMEM41B "Transmembrane protein 41B" [Homo sapiens (taxid:9606)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 76/200 (38%), Positives = 128/200 (64%)

Query:    80 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGV 139
             +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+  
Sbjct:    86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPF 145

Query:   140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLR 199
                L LV   +  GAS C+ LS L+GRP+V  +  EK   +  ++ + RE L+NY++FLR
Sbjct:   146 PLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLR 205

Query:   200 ITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKT 259
             ITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L  L +  +   + +
Sbjct:   206 ITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNS 265

Query:   260 LLVLFLIGSVIILPTLLKRK 279
             + +L ++  + ILP + ++K
Sbjct:   266 IFILMILAVLSILPAIFQKK 285

GO:0016021 "integral to membrane" evidence=IEA

RGD|1310870 Tmem41b "transmembrane protein 41B" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 76/200 (38%), Positives = 128/200 (64%)

Query:    80 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGV 139
             +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+  
Sbjct:    86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPF 145

Query:   140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLR 199
                L LV   +  GAS C+ LS L+GRP+V  +  EK   +  ++ + RE L+NY++FLR
Sbjct:   146 PLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLR 205

Query:   200 ITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKT 259
             ITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L  L +  +   + +
Sbjct:   206 ITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNS 265

Query:   260 LLVLFLIGSVIILPTLLKRK 279
             + +L ++  + ILP + ++K
Sbjct:   266 VFILMILALLSILPAIFQKK 285

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1289225 Tmem41b "transmembrane protein 41B" [Mus musculus (taxid:10090)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 75/200 (37%), Positives = 128/200 (64%)

Query:    80 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGV 139
             +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+  
Sbjct:    86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPF 145

Query:   140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLR 199
                L LV   +  GAS C+ LS L+GRP+V  +  EK   +  ++ + RE L+NY++FLR
Sbjct:   146 PLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLR 205

Query:   200 ITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKT 259
             ITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L  L +  +   + +
Sbjct:   206 ITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLHQLTTAGEAVSWSS 265

Query:   260 LLVLFLIGSVIILPTLLKRK 279
             + +L ++  + ILP + +++
Sbjct:   266 VFILMVLALLSILPAIFQKQ 285

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2050 tmem41ab "transmembrane protein 41ab" [Danio rerio (taxid:7955)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/201 (39%), Positives = 124/201 (61%)

Query:    79 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFG 138
             +LK P  + +LR L + L  Y  ++     I +CS Y++ Q+F IPG+ F+++L+GALFG
Sbjct:    52 RLKFPSDLEELRELAELLKFYKTEHTGYVFILFCSAYLYKQSFAIPGSSFLNMLSGALFG 111

Query:   139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFL 198
              + GLI+     T G+++C+ LS+  G+  +   +PEK+   Q  + + R  L  ++LFL
Sbjct:   112 PLHGLIIACTLTTVGSTNCYLLSRTFGKRHIVRLFPEKVAMLQRMVEENRSSLFFFLLFL 171

Query:   199 RITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFK 258
             R  P  PN F+N+ SPI++IP  IFF + LIGLIP ++I V  G  L ++ S+ D++ + 
Sbjct:   172 RFFPMTPNWFLNVTSPILNIPIPIFFFSILIGLIPYNFICVHTGAVLSEINSLDDIFSWF 231

Query:   259 TLLVLFLIGSVIILPTLLKRK 279
             TLL L LI  V +LP  L R+
Sbjct:   232 TLLQLLLIACVALLPGALIRR 252

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A1A5V7	TM41B_DANRE	No assigned EC number	0.3432	0.9293	0.9326	yes	no
Q5RBZ8	TM41B_PONAB	No assigned EC number	0.3172	0.9293	0.9037	yes	no
Q8K1A5	TM41B_MOUSE	No assigned EC number	0.3321	0.9257	0.9003	yes	no
Q8L586	Y4958_ARATH	No assigned EC number	0.7665	1.0	0.9860	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
COG0398	223	COG0398, COG0398, Uncharacterized conserved protei	1e-15
pfam09335	123	pfam09335, SNARE_assoc, SNARE associated Golgi pro	1e-12
COG0586	208	COG0586, DedA, Uncharacterized membrane-associated	0.004

>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown]

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 85  TIADLRLLKDNLATYAQDYPVPF-IIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGL 143
            +  L L  + L  + Q Y     ++ +   Y+     +IPG+I  +L  G LFG   G 
Sbjct: 27  GLLVLLLDPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSIL-TLAGGLLFGPFLGF 85

Query: 144 ILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPS 203
           +  +  ATAG++  F L++ +GR  V  F   K +  Q   A         +L LR+ P 
Sbjct: 86  LYSLIGATAGSTLAFLLARYLGRDWVLKFVGGKEKV-QRIDAGLERNGFWAILLLRLIPI 144

Query: 204 LPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVL 263
            P   +N A+ +  I F  F +ATL+G +P + +    G A   + S         +L L
Sbjct: 145 FPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSAFLGIGSPL----LLLVLAL 200

Query: 264 FLIGSVIILPTLLKRKRI 281
            ++G   I+    + +R 
Sbjct: 201 LILGVFAIVAKRKELRRH 218

Length = 223

>gnl|CDD|220186 pfam09335, SNARE_assoc, SNARE associated Golgi protein

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 123 IPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV--SWFWPEKLRFF 180
           +PGT+ + + AGALFG   G ++ +  A  G+   + L + +GR  +       +  +  
Sbjct: 1   LPGTVLL-IAAGALFGPWLGFLVALLGALLGSLLAYLLGRYLGRRALRRRLLKEKAFQRL 59

Query: 181 QAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
           Q             +L LR+ P +P   +N  + +  + F  F L T +G++P + + V 
Sbjct: 60  QRVERLVERYGFKALLLLRLLPGVPRDLVNYVAGLSRVSFRRFLLGTFLGILPWALLYVY 119

Query: 241 AG 242
            G
Sbjct: 120 LG 121

This is a family of SNARE associated Golgi proteins. The yeast member of this family localises with the t-SNARE Tlg2. Length = 123

>gnl|CDD|223659 COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 39/206 (18%), Positives = 84/206 (40%), Gaps = 16/206 (7%)

Query: 88  DLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL-----FGVIRG 142
           D+ LL   +   +  Y   F+I +  + + +    +PG + + LLAGAL       +   
Sbjct: 2   DMELLILWIQEGSLGYLGVFLILFLESGLLV-GPPLPGEVLL-LLAGALAAQGKLNLWLV 59

Query: 143 LILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNY---MLFL- 198
           +++    A  G    +++ +  GR L+   W  +L   + ++ K       +    +FL 
Sbjct: 60  ILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRL-LKRKKLDKAELLFERHGLFAIFLG 118

Query: 199 RITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALG---DLQSVKDLY 255
           R  P +    + + + +  +P   F L  ++G +  + +    G  LG   D+     L 
Sbjct: 119 RFIPGVRT-LVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVIDVLVHLLLV 177

Query: 256 DFKTLLVLFLIGSVIILPTLLKRKRI 281
               L++  L+  +++      R+R 
Sbjct: 178 LLGILVLAVLVLVLLLALLWWLRRRK 203

Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG3140	275	consensus Predicted membrane protein [Function unk	100.0
COG0398	223	Uncharacterized conserved protein [Function unknow	99.97
PRK10847	219	hypothetical protein; Provisional	99.86
PF09335	123	SNARE_assoc: SNARE associated Golgi protein; Inter	99.85
COG0586	208	DedA Uncharacterized membrane-associated protein [	99.79
COG1238	161	Predicted membrane protein [Function unknown]	99.29
PF06695	121	Sm_multidrug_ex: Putative small multi-drug export	95.64
PRK01844	72	hypothetical protein; Provisional	81.8
PRK11677	134	hypothetical protein; Provisional	81.66
TIGR02359	160	thiW thiW protein. Levels of thiamine pyrophosphat	80.45

>KOG3140 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1e-32  Score=250.93  Aligned_cols=256  Identities=45%  Similarity=0.799  Sum_probs=241.5

Q ss_pred             CCCCCCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHcccc-cccccccCCCHHhHHHHHHHHHHhHhhCCch
Q 023383           28 KEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAA-DYGKLKLPRTIADLRLLKDNLATYAQDYPVP  106 (283)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~L~~~~~~~P~~-~~~~l~~p~~l~~l~~l~~~l~~~~~~~~~~  106 (283)
                      ....+|+.+...|++......|+...++++|......+.+.|...|.. |...+++|++++|...+.+-+++|.+.+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~~~~l~~i~~s~~~~~~~~~l~lp~~i~~~~~L~~vl~~y~~~~~a~   95 (275)
T KOG3140|consen   16 LLVVGQRAGQFLKKDELLLSLMSIAERLGIFLSFSLVLVYIYLSAPALSELGVLKLPRDILDLRGLGAVLRKYKATYFAA   95 (275)
T ss_pred             hhccchhhhhhcchhhhhhhhccHHHHHHHhhHHHHHHHHHHHcccCccccccccccchhHHHHHHHHHHHHHHhhhHHH
Confidence            345677777777777888889999999999999999999999999987 5778999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhceeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhhHHHHHHHHHHHH
Q 023383          107 FIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAK  186 (283)
Q Consensus       107 ~~l~f~~l~i~~~~~~iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~~~~~~~~~~l~k  186 (283)
                      ..++|++.|++.|.+++||..++++.+|++||+|.|.++++.++++|+++||++++.+||+.+.++++++...++..+++
T Consensus        96 ~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~~~  175 (275)
T KOG3140|consen   96 VLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDVEL  175 (275)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 023383          187 RREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLI  266 (283)
Q Consensus       187 ~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l  266 (283)
                      ++++.++++.+.|+.|+.|++++|+++++.+++++.|++++++|++|.+++++..|+.+.++++.++.+++.+...+...
T Consensus       176 ~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~~~~~~~~~~l~~~  255 (275)
T KOG3140|consen  176 NRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASDAFSWSSILTLLEL  255 (275)
T ss_pred             cccchhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccccccCCcchHHHHHH
Confidence            98888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcC
Q 023383          267 GSVIILPTLLKRKRIYE  283 (283)
Q Consensus       267 ~~~~llp~~~~r~~~~~  283 (283)
                      +++.++|...+||+..|
T Consensus       256 ~~~~l~~~~l~kk~~~~  272 (275)
T KOG3140|consen  256 ALLSLLPTLLKKKRKLK  272 (275)
T ss_pred             HHHHHhHHHHhhhhhhh
Confidence            99999999999988653

>COG0398 Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=4.1e-29  Score=222.60  Aligned_cols=150  Identities=29%  Similarity=0.506  Sum_probs=133.0

Q ss_pred             hHHHHHHHHHHhHhhCCchHHHH-HHHhhhhhceeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcH
Q 023383           88 DLRLLKDNLATYAQDYPVPFIIG-YCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGR  166 (283)
Q Consensus        88 ~l~~l~~~l~~~~~~~~~~~~l~-f~~l~i~~~~~~iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~  166 (283)
                      +.+++++|++++    +.++++. |++.++.....++|+++ +++++|++||+++|++++++|+++||+++|+++|++||
T Consensus        34 ~~~~l~~~i~~~----g~~~pl~~fil~~l~~~~~~iP~~i-l~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr  108 (223)
T COG0398          34 DPETLREWIQAY----GALGPLVFFILLYLVATLPIIPGSI-LTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGR  108 (223)
T ss_pred             CHHHHHHHHHHc----CchHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            566777777665    4456666 77777777778899998 69999999999999999999999999999999999999


Q ss_pred             HHHhhhhh--HHHHHHHHHHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHH
Q 023383          167 PLVSWFWP--EKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLA  244 (283)
Q Consensus       167 ~~v~~~~~--~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~  244 (283)
                      +.++++.+  ++.++++++++|+  + ++.++++|++|++|++++||+||++++++++|.++|++|++|++++|+++|+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~--g-~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~  185 (223)
T COG0398         109 DWVLKFVGGKEKVQRIDAGLERN--G-FWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA  185 (223)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhC--C-hHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99988765  5788999999986  3 78999999999999999999999999999999999999999999999999964


Q ss_pred             h
Q 023383          245 L  245 (283)
Q Consensus       245 l  245 (283)
                      .
T Consensus       186 ~  186 (223)
T COG0398         186 F  186 (223)
T ss_pred             H
Confidence            3

>PRK10847 hypothetical protein; Provisional

Probab=99.86  E-value=2.3e-20  Score=166.20  Aligned_cols=181  Identities=20%  Similarity=0.258  Sum_probs=132.8

Q ss_pred             HHHHhHhhCCchH-HHHHHHhhhhh---ceeecChHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHH
Q 023383           95 NLATYAQDYPVPF-IIGYCSTYIFM---QTFMIPGTIFMSLLAGALFG-------VIRGLILVVFNATAGASSCFFLSKL  163 (283)
Q Consensus        95 ~l~~~~~~~~~~~-~l~f~~l~i~~---~~~~iPg~~~L~l~aG~lfG-------~~~G~~l~~ig~~lGa~i~y~lgR~  163 (283)
                      .++++.++++.++ .++|+.++...   ...++|++.+ .+++|++.+       ++..++.+++|+++|+.++|++||+
T Consensus        17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~-l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~   95 (219)
T PRK10847         17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSL-LFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRL   95 (219)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455443 23566666554   2346899984 677887754       5677899999999999999999999


Q ss_pred             hcHHHHhhh----h-hHHHHHHHHHHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHH
Q 023383          164 IGRPLVSWF----W-PEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYIT  238 (283)
Q Consensus       164 lg~~~v~~~----~-~~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~  238 (283)
                      +|++..++.    . ++++++.+++++|++   .+.+++.|++|+++ ++++++||+++||+++|++.+.+|.++|+.++
T Consensus        96 ~G~~~l~~~~~~~~~~~~l~~~~~~~~r~G---~~~v~i~RfiP~~R-~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~  171 (219)
T PRK10847         96 FGEKLFSNPNSKIFRRSYLDKTHQFYEKHG---GKTIILARFVPIVR-TFAPFVAGMGHMSYRHFAAYNVIGALLWVLLF  171 (219)
T ss_pred             hCHHHhhccccccCCHHHHHHHHHHHHHcC---CEEEEeeCCccchH-hHHHHHhHhcCCChHHHHHHHHHHHHHHHHHH
Confidence            999987532    2 245788899999873   35899999999987 68999999999999999999999999999999


Q ss_pred             HHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023383          239 VRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRI  281 (283)
Q Consensus       239 ~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp~~~~r~~~  281 (283)
                      +.+|+.+++.....+... ..+..++++.++..+..++|||++
T Consensus       172 ~~~Gy~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~  213 (219)
T PRK10847        172 TYAGYFFGTLPFVQDNLK-LLIVGIIVVSILPGVIEIWRHKRA  213 (219)
T ss_pred             HHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999987643333221 122233333444555667776654

>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins

Probab=99.85  E-value=2.8e-20  Score=149.56  Aligned_cols=117  Identities=30%  Similarity=0.526  Sum_probs=102.5

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhh-h-HHHHH---HHHHHHHhccchHhHHHH
Q 023383          123 IPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFW-P-EKLRF---FQAEIAKRREKLLNYMLF  197 (283)
Q Consensus       123 iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~-~-~~~~~---~~~~l~k~~~~~~~~vll  197 (283)
                      +|++++ .+++|++||++.|++++++|+++|+.++|+++|+++++..++.. + ++.++   .+++++|+   +++.+++
T Consensus         1 iP~~~~-~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~l~~   76 (123)
T PF09335_consen    1 IPGSIL-LIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKY---GFWVLFL   76 (123)
T ss_pred             CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhh---hHHHHHH
Confidence            699985 78999999999999999999999999999999999965554433 2 33444   67777665   3678999


Q ss_pred             hhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHH
Q 023383          198 LRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGL  243 (283)
Q Consensus       198 ~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~  243 (283)
                      .|++|++|++++|+++|++++|+++|++++++|.+|++.+++++|+
T Consensus        77 ~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~  122 (123)
T PF09335_consen   77 SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY  122 (123)
T ss_pred             HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999996

The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].

>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]

Probab=99.79  E-value=5.6e-18  Score=149.74  Aligned_cols=138  Identities=19%  Similarity=0.386  Sum_probs=118.2

Q ss_pred             HHHHHHhhhhh---ceeecChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhh-----
Q 023383          108 IIGYCSTYIFM---QTFMIPGTIFMSLLAGAL-----FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP-----  174 (283)
Q Consensus       108 ~l~f~~l~i~~---~~~~iPg~~~L~l~aG~l-----fG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~-----  174 (283)
                      ..+|+..+.+.   ...++|++++ .+++|++     .+++...+.+++|+++|+.+.|++||++|++..++..+     
T Consensus        18 ~~~f~~~f~e~~l~~~~~lPge~i-L~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~   96 (208)
T COG0586          18 LGVFLILFLESGLLVGPPLPGEVL-LLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLK   96 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCCchHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCC
Confidence            34555555555   5568999995 6788887     45788899999999999999999999999998877654     


Q ss_pred             -HHHHHHHHHHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Q 023383          175 -EKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQS  250 (283)
Q Consensus       175 -~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s  250 (283)
                       ++++|.+++++||+   .+.+++.|++|.+ .+++++.||+++||+++|.+.+++|.+.|..++++.|..+++.-+
T Consensus        97 ~~~l~~a~~~f~r~G---~~~vf~~RFip~v-Rt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~~  169 (208)
T COG0586          97 RKKLDKAELLFERHG---LFAIFLGRFIPGV-RTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVID  169 (208)
T ss_pred             HHHHHHHHHHHHHcC---chhhhhhcccchh-HhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence             46888899999883   4699999999998 579999999999999999999999999999999999999998643

>COG1238 Predicted membrane protein [Function unknown]

Probab=99.29  E-value=9.2e-11  Score=99.58  Aligned_cols=133  Identities=14%  Similarity=0.211  Sum_probs=104.5

Q ss_pred             HHHHHHhhhhhceeecChHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhh---HHHHHHHH
Q 023383          108 IIGYCSTYIFMQTFMIPGTIFMSLLAGAL--FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP---EKLRFFQA  182 (283)
Q Consensus       108 ~l~f~~l~i~~~~~~iPg~~~L~l~aG~l--fG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~---~~~~~~~~  182 (283)
                      ..+|+..|+..+.+|+|.+++  +++..+  +.+|.-..++++|+++|++++|++||..++...++...   ++.++.++
T Consensus        20 ~~Lf~vaF~eat~lP~~sE~~--l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~~~~~~   97 (161)
T COG1238          20 AGLFIVAFLEATLLPVPSEVL--LAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEALEKLQE   97 (161)
T ss_pred             HHHHHHHHHHHHhcCCChHHH--HHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHHHHHHH
Confidence            467888888899999999984  333333  56888899999999999999999999998887765332   34555554


Q ss_pred             -HHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 023383          183 -EIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGD  247 (283)
Q Consensus       183 -~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~  247 (283)
                       +.+|+  + .+.+++.= +|.+| ++++.+||..++++++|++..++|....-++.+++....++
T Consensus        98 ~~~~ry--g-~~~ll~s~-lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~~  158 (161)
T COG1238          98 KWYRRY--G-VWTLLLSW-LPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGGE  158 (161)
T ss_pred             HHHHHH--H-HHHHHHHh-ccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence             55555  3 44666554 55588 99999999999999999999999999999998888766543

>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins

Probab=95.64  E-value=0.36  Score=39.10  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHH-----Hhhhh---hHHHHHHHHHHHHhccchHhHHHHhhhccccc---
Q 023383          137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPL-----VSWFW---PEKLRFFQAEIAKRREKLLNYMLFLRITPSLP---  205 (283)
Q Consensus       137 fG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~-----v~~~~---~~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P---  205 (283)
                      ++++..++++.+|+++.....+++-+.+-+-.     .++..   .+|.++-++.++|++   +..+++.=.+| +|   
T Consensus        14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg---~~GL~lFVaIP-lP~TG   89 (121)
T PF06695_consen   14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYG---FWGLALFVAIP-LPGTG   89 (121)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHhCC-CCcch
Confidence            34788889999999988777666655543221     12211   233445566677662   44554443455 34   


Q ss_pred             hhHHHHhhhccCCChHHHHHHHHHhHHHHHH
Q 023383          206 NLFINLASPIVDIPFHIFFLATLIGLIPASY  236 (283)
Q Consensus       206 ~~lin~~aG~~~i~~~~F~lat~iG~~P~~~  236 (283)
                      -+.-+.+|-+.+++.++=+++..+|.+-..+
T Consensus        90 ~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~  120 (121)
T PF06695_consen   90 AWTGALIASLLGMDKKKAFLAIFLGVLIAGV  120 (121)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            5677899999999999999999999876543

>PRK01844 hypothetical protein; Provisional

Probab=81.80  E-value=6.5  Score=29.00  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 023383          139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSW  171 (283)
Q Consensus       139 ~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~  171 (283)
                      .|..+++.+++..+|..++|+++|+..++.+++
T Consensus         3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~   35 (72)
T PRK01844          3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQK   35 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666778899999999999999887666654

>PRK11677 hypothetical protein; Provisional

Probab=81.66  E-value=4.3  Score=33.61  Aligned_cols=24  Identities=8%  Similarity=-0.003  Sum_probs=19.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhcHH
Q 023383          144 ILVVFNATAGASSCFFLSKLIGRP  167 (283)
Q Consensus       144 ~l~~ig~~lGa~i~y~lgR~lg~~  167 (283)
                      +++++|.++|.+++|+++|+..+.
T Consensus         4 ~~a~i~livG~iiG~~~~R~~~~~   27 (134)
T PRK11677          4 EYALIGLVVGIIIGAVAMRFGNRK   27 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccch
Confidence            567788999999999999986544

>TIGR02359 thiW thiW protein

Probab=80.45  E-value=26  Score=29.84  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=26.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 023383          124 PGTIFMSLLAGALFGVIRGLILVVFNATAGASS  156 (283)
Q Consensus       124 Pg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i  156 (283)
                      |-+-+.++++|.+||||+|.+...+++.++...
T Consensus        32 ~~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~   64 (160)
T TIGR02359        32 PVQHFVNVIAGVLLGPWYALAVAFIIGLLRNTL   64 (160)
T ss_pred             ChhHHHHHHHHHHHchHHHHHHHHHHHHHHHHh
Confidence            434346899999999999999988888777664

Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00