Citrus Sinensis ID: 023385

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHGNVRM
ccccccccccccccccEEEccccccccccHHHcccccHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccc
cccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHEcccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEcccccc
messasgralphhrepfdwltrpplnlittTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSrlchiprlkdqwcenafrfngvnffrftndafasslsffngggtrknsghegtshldtartnlfIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYslnsigptmekicgprrylgVYFSSAIASSAmsyrfcnspavgasgaIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHGNVRM
messasgralphhrepfdwltrpPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNmlhgnvrm
MESSASGRALPHHREPFDWLTRPPLNLITTTAKhslsvslsrrllhhhplharrllhssVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHGNVRM
****************FDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGG*************LDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHG****
************HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFAS*****************************FIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHGNVRM
***********HHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGT**********HLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHGNVRM
**********PHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNG*******************TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHGNVRM
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MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHGNVRM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query283 2.2.26 [Sep-21-2011]
P54493 507 Rhomboid protease GluP OS yes no 0.371 0.207 0.409 2e-16
Q695T9283 Rhomboid-like protease 2 N/A no 0.374 0.374 0.361 2e-11
P96617199 Putative rhomboid proteas no no 0.406 0.577 0.352 1e-10
P46116281 Rhomboid protease AarA OS yes no 0.533 0.537 0.294 2e-09
Q695U0293 Rhomboid-like protease 1 N/A no 0.530 0.511 0.316 3e-09
Q6IUY1263 Rhomboid-like protease 3 N/A no 0.477 0.513 0.294 3e-07
Q83PV6276 Rhomboid protease GlpG OS yes no 0.395 0.405 0.283 1e-05
P53259346 Rhomboid protein 1, mitoc yes no 0.406 0.332 0.311 2e-05
P58872404 Rhomboid-related protein yes no 0.279 0.195 0.35 3e-05
B7NMI8276 Rhomboid protease GlpG OS yes no 0.395 0.405 0.274 4e-05
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2 Back     alignment and function desciption
 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 65/105 (61%)

Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
           + L+ +GAK NSLI +G++WRL T   LH  IAHL  N  +L S+G  +E++ G  R+L 
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263

Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
           +Y ++ I  S  S+ F   P+ GASGAIFG +G+     + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 308
Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5
>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1 Back     alignment and function description
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1 Back     alignment and function description
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1 Back     alignment and function description
>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1 Back     alignment and function description
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1 Back     alignment and function description
>sp|Q83PV6|GLPG_SHIFL Rhomboid protease GlpG OS=Shigella flexneri GN=glpG PE=3 SV=5 Back     alignment and function description
>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 Back     alignment and function description
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1 Back     alignment and function description
>sp|B7NMI8|GLPG_ECO7I Rhomboid protease GlpG OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=glpG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
255581209340 KOM, putative [Ricinus communis] gi|2235 0.915 0.761 0.605 7e-89
224073304325 predicted protein [Populus trichocarpa] 0.911 0.793 0.590 1e-85
118483595325 unknown [Populus trichocarpa] 0.911 0.793 0.586 4e-85
225448034330 PREDICTED: rhomboid protease gluP [Vitis 0.904 0.775 0.586 3e-80
363807582342 uncharacterized protein LOC100805315 [Gl 0.897 0.742 0.578 4e-73
357452411327 Rhomboid protease gluP [Medicago truncat 0.862 0.746 0.561 4e-71
388500820327 unknown [Medicago truncatula] 0.862 0.746 0.557 3e-70
334182855336 RHOMBOID-like protein 10 [Arabidopsis th 0.883 0.744 0.515 1e-64
388498512220 unknown [Lotus japonicus] 0.544 0.7 0.753 6e-63
30689150343 RHOMBOID-like protein 10 [Arabidopsis th 0.883 0.728 0.498 3e-62
>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis] gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  333 bits (853), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 164/271 (60%), Positives = 202/271 (74%), Gaps = 12/271 (4%)

Query: 13  HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRL 72
           H +P  W+   P+    TT  H ++ + S RL          LLHSS KKLS LCH+PRL
Sbjct: 19  HHQPIWWVQFQPVGPTPTTPFHLIATATSLRL--------SFLLHSSFKKLSHLCHVPRL 70

Query: 73  KDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLF 128
           KD WC  A +F G++F + +ND  AS+    LSFFNGG T K  G +G  + + +++N F
Sbjct: 71  KDIWCRKASQFKGIDFLQISNDVLASTTSHCLSFFNGGETGKGHGIQGAPYSEASKSNSF 130

Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
            GR+WTNILLA+N+LV+ AQFATQ KLL WGAK+NSLIDKGQFWRL TS+FLHANI HLM
Sbjct: 131 NGRKWTNILLAINILVFAAQFATQGKLLFWGAKVNSLIDKGQFWRLVTSSFLHANIGHLM 190

Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
           VN YSLNSIGPT+E + GPRR+L VYF+SAIASSA SY FC +PAVGASGAIFGLVGS A
Sbjct: 191 VNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVGSLA 250

Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMLHG 279
           VF++RHR ++ GGKEELQH+A+VI+ NM+ G
Sbjct: 251 VFVIRHRGMIRGGKEELQHIAQVILLNMVIG 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa] gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera] gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max] gi|255640088|gb|ACU20335.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula] gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula] Back     alignment and taxonomy information
>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana] gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388498512|gb|AFK37322.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana] gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
TAIR|locus:2032940343 RBL10 "RHOMBOID-like protein 1 0.777 0.641 0.523 5.1e-58
UNIPROTKB|Q8EI50528 SO_1000 "Rhomboid protease" [S 0.434 0.232 0.371 5.6e-14
TIGR_CMR|SO_1000528 SO_1000 "rhomboid family prote 0.434 0.232 0.371 5.6e-14
TAIR|locus:2159808434 AT5G38510 [Arabidopsis thalian 0.385 0.251 0.321 4.5e-11
UNIPROTKB|Q81VF8190 BAS0235 "Rhomboid family prote 0.413 0.615 0.305 2.6e-10
TIGR_CMR|BA_0249190 BA_0249 "rhomboid family prote 0.413 0.615 0.305 2.6e-10
TAIR|locus:2182925346 RBL3 "RHOMBOID-like protein 3" 0.413 0.338 0.372 5.3e-10
TAIR|locus:2029376 351 KOM "KOMPEITO" [Arabidopsis th 0.427 0.344 0.303 7.3e-10
DICTYBASE|DDB_G0295849489 DDB_G0295849 "rhomboid family 0.367 0.212 0.361 1.5e-09
UNIPROTKB|Q5HUF9172 CJE1083 "Rhomboid family prote 0.395 0.651 0.312 2.2e-09
TAIR|locus:2032940 RBL10 "RHOMBOID-like protein 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 122/233 (52%), Positives = 160/233 (68%)

Query:    60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
             +KKL       R+K    +  F FNG NF +   D   S  S    FFNGG +R N   G
Sbjct:    50 LKKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 109

Query:   114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
              EG+S+ +T++ N   GR+WTN+LLA+NV++YIAQ A+  K+L WGAKINSLI++GQ WR
Sbjct:   110 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 169

Query:   174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
             LAT++ LHAN  HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A        SAMSY
Sbjct:   170 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 229

Query:   227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMLHG 279
              F  +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L  +A++I  NM  G
Sbjct:   230 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMG 282
GO:0004252 "serine-type endopeptidase activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0031969 "chloroplast membrane" evidence=IDA
UNIPROTKB|Q8EI50 SO_1000 "Rhomboid protease" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1000 SO_1000 "rhomboid family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TAIR|locus:2159808 AT5G38510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q81VF8 BAS0235 "Rhomboid family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0249 BA_0249 "rhomboid family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5HUF9 CJE1083 "Rhomboid family protein" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.21LOW CONFIDENCE prediction!
3rd Layer3.4.21.1050.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
pfam01694146 pfam01694, Rhomboid, Rhomboid family 3e-25
COG0705228 COG0705, COG0705, Membrane associated serine prote 1e-17
PTZ00101278 PTZ00101, PTZ00101, rhomboid-1 protease; Provision 1e-12
TIGR03902154 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT 1e-07
TIGR04239271 TIGR04239, rhombo_GlpG, rhomboid family protease G 1e-07
PRK10907276 PRK10907, PRK10907, intramembrane serine protease 6e-06
>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family Back     alignment and domain information 
 Score = 97.3 bits (243), Expect = 3e-25
 Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 2/115 (1%)

Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
           L+ +GQ WRL TS FLHA   HL+ N  +L   G  +E+I G  R+L +Y  S +A S +
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNML 277
           SY F   +SP+VGASGAIFGL+G+  V + R+R +L      L  L  +I+ N+L
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLL 115

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146
>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional Back     alignment and domain information
>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease Back     alignment and domain information
>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG Back     alignment and domain information
>gnl|CDD|182828 PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 283
PTZ00101278 rhomboid-1 protease; Provisional 99.9
PRK10907276 intramembrane serine protease GlpG; Provisional 99.89
KOG2289316 consensus Rhomboid family proteins [Signal transdu 99.85
COG0705228 Membrane associated serine protease [Amino acid tr 99.83
PF01694145 Rhomboid: Rhomboid family; InterPro: IPR022764 In 99.71
KOG2632258 consensus Rhomboid family proteins [Function unkno 99.42
KOG2290652 consensus Rhomboid family proteins [Signal transdu 99.24
PF04511197 DER1: Der1-like family; InterPro: IPR007599 The en 98.6
PF0855199 DUF1751: Eukaryotic integral membrane protein (DUF 98.35
KOG2980310 consensus Integral membrane protease of the rhombo 98.35
KOG0858239 consensus Predicted membrane protein [Function unk 98.23
KOG2890 326 consensus Predicted membrane protein [Function unk 96.81
COG5291 313 Predicted membrane protein [Function unknown] 96.69
KOG4463 323 consensus Uncharacterized conserved protein [Funct 96.08
>PTZ00101 rhomboid-1 protease; Provisional Back     alignment and domain information 
Probab=99.90  E-value=7.3e-23  Score=189.35  Aligned_cols=128  Identities=27%  Similarity=0.405  Sum_probs=111.0

Q ss_pred             ccChHHHHHHHHHHHHHHHHHHhch---------HHHHHhhhccccccccCCcchheehhcccCcHHHHHHHHHHHHHHH
Q 023385          128 FIGRQWTNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG  198 (283)
Q Consensus       128 ~~~~pvT~~Liai~v~vfll~~~~~---------~~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G  198 (283)
                      .+.+.+|..++++++++|++.....         ..+..+|+..+..+.++||||++|++|+|.|+.|+++||+.++.+|
T Consensus        50 f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G  129 (278)
T PTZ00101         50 FTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMG  129 (278)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            3456789999999999999865521         1456778877777788999999999999999999999999999999


Q ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHhhhcC-CceechHHHHHHHHHHHHHHHHhhh
Q 023385          199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHR  255 (283)
Q Consensus       199 ~~lE~~~G~~rfl~lyllsgi~g~l~s~~~~~-~~~vGaSGaIfGLiga~~~~~~~~~  255 (283)
                      ..+|+.+|++|++.+|+++|+.|++++..+.+ ..++||||++||++|+++......+
T Consensus       130 ~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w  187 (278)
T PTZ00101        130 FTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLW  187 (278)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987754 5689999999999999987655444

>PRK10907 intramembrane serine protease GlpG; Provisional Back     alignment and domain information
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2632 consensus Rhomboid family proteins [Function unknown] Back     alignment and domain information
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins Back     alignment and domain information
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins Back     alignment and domain information
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms] Back     alignment and domain information
>KOG0858 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2890 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG5291 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4463 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
2xov_A181 Crystal Structure Of E.Coli Rhomboid Protease Glpg, 5e-06
2ic8_A182 Crystal Structure Of Glpg Length = 182 5e-06
2irv_A182 Crystal Structure Of Glpg, A Rhomboid Intramembrane 5e-06
3b45_A180 Crystal Structure Of Glpg At 1.9a Resolution Length 6e-06
2xow_A179 Structure Of Glpg In Complex With A Mechanism-Based 6e-06
2o7l_A180 The Open-Cap Conformation Of Glpg Length = 180 6e-06
2xtu_A181 Structure Of E.Coli Rhomboid Protease Glpg Active S 9e-06
2xtv_A180 Structure Of E.Coli Rhomboid Protease Glpg, Active 1e-05
3b44_A180 Crystal Structure Of Glpg W136a Mutant Length = 180 4e-04
>pdb|2XOV|A Chain A, Crystal Structure Of E.Coli Rhomboid Protease Glpg, Native Enzyme Length = 181 Back     alignment and structure 
Iteration: 1

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119
>pdb|2IC8|A Chain A, Crystal Structure Of Glpg Length = 182 Back     alignment and structure
>pdb|2IRV|A Chain A, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine Protease Length = 182 Back     alignment and structure
>pdb|3B45|A Chain A, Crystal Structure Of Glpg At 1.9a Resolution Length = 180 Back     alignment and structure
>pdb|2XOW|A Chain A, Structure Of Glpg In Complex With A Mechanism-Based Isocoumarin Inhibitor Length = 179 Back     alignment and structure
>pdb|2O7L|A Chain A, The Open-Cap Conformation Of Glpg Length = 180 Back     alignment and structure
>pdb|2XTU|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg Active Site Mutant, S201t In Trigonal Crystal Form Length = 181 Back     alignment and structure
>pdb|2XTV|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg, Active Site Mutant, S201t, Orthorhombic Crystal Form Length = 180 Back     alignment and structure
>pdb|3B44|A Chain A, Crystal Structure Of Glpg W136a Mutant Length = 180 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 4e-38
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 2e-37
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181 Back     alignment and structure
 Score =  131 bits (332), Expect = 4e-38
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 1/147 (0%)

Query: 134 TNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA     D +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G   +   
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGE 126

Query: 253 RHRNILGGGKEELQHLAKVIIFNMLHG 279
           R        +  L   A + I      
Sbjct: 127 RDPQSGIYLQRGLIIFALIWIVAGWFD 153
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 99.92
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 99.91
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Back     alignment and structure
Probab=99.92  E-value=7.1e-24  Score=183.10  Aligned_cols=123  Identities=25%  Similarity=0.329  Sum_probs=106.9

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchheehhcccCcHHHHHHHHHHHHHHHHHHHHHhCh
Q 023385          129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (283)
Q Consensus       129 ~~~pvT~~Liai~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~  207 (283)
                      +.+|+|..++++|+++|+++...+. ...++....+..+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~   81 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            3468999999999999999877544 233444444445678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCceechHHHHHHHHHHHHHHH
Q 023385          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI  251 (283)
Q Consensus       208 ~rfl~lyllsgi~g~l~s~~~~~~~~vGaSGaIfGLiga~~~~~  251 (283)
                      +|++.+|+.+++.+++.++++.+..++|+||+++|++++.++..
T Consensus        82 ~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~  125 (181)
T 2xov_A           82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRG  125 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877669999999999999887643
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 283
d3b45a1180 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 3e-20
d2nr9a1189 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu 2e-17
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 83.2 bits (205), Expect = 3e-20
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 1/126 (0%)

Query: 134 TNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA     D +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G   +   
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGE 126

Query: 253 RHRNIL 258
           R     
Sbjct: 127 RDPQSG 132
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
d3b45a1180 GlpG {Escherichia coli [TaxId: 562]} 99.91
d2nr9a1189 GlpG homolog HI0618 {Haemophilus influenzae [TaxId 99.9
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-23  Score=178.24  Aligned_cols=132  Identities=23%  Similarity=0.273  Sum_probs=117.0

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhc-hHHHHHhhhccccccccCCcchheehhcccCcHHHHHHHHHHHHHHHHHHHHHhCh
Q 023385          129 IGRQWTNILLAVNVLVYIAQFAT-QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (283)
Q Consensus       129 ~~~pvT~~Liai~v~vfll~~~~-~~~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~  207 (283)
                      |..|+|..++++|+++|+++... ..+..++...+.....++|+||++|++|+|+|+.|+++||+.++.+|+.+|+.+|+
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~   81 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45799999999999999987654 34555666666667788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCceechHHHHHHHHHHHHHHHHhhhhhcCC
Q 023385          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG  260 (283)
Q Consensus       208 ~rfl~lyllsgi~g~l~s~~~~~~~~vGaSGaIfGLiga~~~~~~~~~~~~~~  260 (283)
                      ++++.+|+++++.|++++..+.+....|+||+++|++++.....++++.....
T Consensus        82 ~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~  134 (180)
T d3b45a1          82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY  134 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC
T ss_pred             hhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhhhcchhHHh
Confidence            99999999999999999999998899999999999999999888877754443
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure