Citrus Sinensis ID: 023398

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEEcccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHccHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccEEccccHHEEEEEEcccccccccEEEEEEEEEcccccccccEEEEEEEcHHcHHHHHHHHHHHHHHHcccccccccHHHHcccc
Coil and Loop (DISEMBL)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSllnlpspgqvdPVVASLRSLIRKCVRenftsddllklfppdlsldLQSNLILLLQKHQKQWKeessreqqplsgtsvsyhvkmsaapsfrpflssviatplwphqddpftnfnhndlgasasviadtnvaplapmpllrdgsppgnmgslpclksmtwtmeksnsepgnrVAVISLKlqdytkspsgeteVKFQLTKDTLEAMLRSLTYINEQLSSlaatssgpaqkkqkq
Flexible Loop (DISEMBL)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSllnlpspgqvDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKeessreqqplsGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLqdytkspsgetevkFQLTKDTLEAMLRSLTYINEQLsslaatssgpaqkkqkq
Low Complexity Region (SEG)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPdlsldlqsnlilllqKHQKQWKEESSREQQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ
Disordered region (IsUnstruct)
********TLYLQLHKLSAINSEQALDNILTTLWSTRKT*********************VDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQK*******************************SFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVA******************************************VISLK***************FQLTKDTLEAMLRSLTYIN********************
Disordered Region (DISOPRED)
***********LQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQ*LLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQ***********************************VIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKS**EPGNRVAVISLKLQ************KFQLTKDTLEAMLRSLTYINEQ******************
Disordered Region (DISEMBL)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRK***********QSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQ********************SVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT********GNRVAVISLKLQDY*********VKFQLTKDTLEAMLRSLTYINEQLSSL**************
Disordered Region (DISPRO)
******TDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTSVSYHVKMSAAPS**********TPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLS****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q9ZVC9	851	Protein FAR1-RELATED SEQU	yes	no	0.446	0.148	0.566	6e-33

>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 89/127 (70%), Gaps = 1/127 (0%)

Query: 144 LSSVIATPL-WPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLP 202
           LS+   TPL WP QD+    FN ND GA A  ++D N+  +AP+ L RD + P NM +LP
Sbjct: 663 LSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVSLHRDDTAPENMVALP 722

Query: 203 CLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYIN 262
           CLKS+TW ME  N+ PG RVAVI+LKL DY K PS + +VKFQL+  TLE MLRS+ YI+
Sbjct: 723 CLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAYIS 782

Query: 263 EQLSSLA 269
           EQLSS A
Sbjct: 783 EQLSSPA 789

Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
255580266	304	hypothetical protein RCOM_0845740 [Ricin	0.929	0.861	0.646	1e-89
296085855	332	unnamed protein product [Vitis vinifera]	0.975	0.828	0.625	1e-77
225439135	277	PREDICTED: uncharacterized protein LOC10	0.975	0.992	0.625	2e-77
118484374	274	unknown [Populus trichocarpa]	0.960	0.989	0.568	3e-71
358248898	253	uncharacterized protein LOC100778299 [Gl	0.843	0.940	0.505	6e-64
294463944	278	unknown [Picea sitchensis]	0.953	0.967	0.476	2e-60
147846210	242	hypothetical protein VITISV_026657 [Viti	0.787	0.917	0.603	3e-54
357508999	283	FAR1-related protein [Medicago truncatul	0.943	0.939	0.514	8e-54
255561266	523	hypothetical protein RCOM_1110800 [Ricin	0.418	0.225	0.635	1e-36
147790734	1002	hypothetical protein VITISV_002225 [Viti	0.446	0.125	0.611	1e-36

>gi|255580266|ref|XP_002530963.1| hypothetical protein RCOM_0845740 [Ricinus communis] gi|223529478|gb|EEF31435.1| hypothetical protein RCOM_0845740 [Ricinus communis]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/263 (64%), Positives = 204/263 (77%), Gaps = 1/263 (0%)

Query: 8   DTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVAS 67
           D+LYLQLHKLSAI+ E++LD+IL TLW TR+TGLRS EKS +QSLLNL S  ++DPV+A 
Sbjct: 4   DSLYLQLHKLSAIDKEESLDHILATLWKTRRTGLRSPEKSQIQSLLNLSSLPELDPVLAC 63

Query: 68  LRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTS 127
           LRSLIRK   ENFT DDLLKLFPPDLSLDLQSNLILLLQK+Q QWKEE SREQ  L  TS
Sbjct: 64  LRSLIRKSAHENFTGDDLLKLFPPDLSLDLQSNLILLLQKYQNQWKEEISREQHQLPRTS 123

Query: 128 VSYHVKMSAAPSFRPFLSSVIAT-PLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPM 186
           VSY VK S  PS     S  I+  PLWP Q+D    F H+D+G S  ++ D   + + P+
Sbjct: 124 VSYQVKTSMPPSLTALPSLEISNMPLWPRQNDLNGRFTHSDIGVSTPLVVDNTASYVGPV 183

Query: 187 PLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQL 246
            +  D SPP ++G LP LKSMTWTME  NS P N++A+I+LKLQD+TKSPSGE EVKFQL
Sbjct: 184 SIQHDVSPPDDLGVLPRLKSMTWTMENRNSVPANKIAIITLKLQDFTKSPSGEMEVKFQL 243

Query: 247 TKDTLEAMLRSLTYINEQLSSLA 269
           TKDTLEAMLRS+TYI++QLS+++
Sbjct: 244 TKDTLEAMLRSMTYISDQLSNMS 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085855|emb|CBI31179.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 172/275 (62%), Positives = 205/275 (74%)

Query: 8   DTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVAS 67
           +TLY  LHKLS   SE+A++ IL TLW TRKTGL + +KSH+QSLL+LPS  QVDPV+A 
Sbjct: 58  ETLYQHLHKLSGTKSEEAIEEILETLWKTRKTGLSTQQKSHLQSLLSLPSLQQVDPVLAC 117

Query: 68  LRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTS 127
           LRSLIRK V ENF+ DD+LKLFPPDLSLDLQS LILL QK+Q QWKE+ SR++ PL G  
Sbjct: 118 LRSLIRKSVHENFSGDDILKLFPPDLSLDLQSLLILLFQKYQNQWKEDLSRDEYPLPGAH 177

Query: 128 VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMP 187
           VSY VK +   SF P  SS     LWP QDD   +FN++DL +    + D NV+ LAP+ 
Sbjct: 178 VSYQVKTNVPLSFTPLPSSETPASLWPRQDDSIAHFNNSDLVSPTPNVVDNNVSCLAPIS 237

Query: 188 LLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLT 247
           L RD  P  N+G LP LKSMTWTMEK N  P NRVA +SLKLQDYTKSP GETEVKFQLT
Sbjct: 238 LQRDVGPLDNLGILPRLKSMTWTMEKRNLAPANRVAFVSLKLQDYTKSPLGETEVKFQLT 297

Query: 248 KDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 282
           +DTLE MLRS+TYI+EQLS+   +S+ P QK+ +Q
Sbjct: 298 RDTLEGMLRSMTYISEQLSNTVGSSAEPLQKRPRQ 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439135|ref|XP_002270929.1| PREDICTED: uncharacterized protein LOC100255422 [Vitis vinifera]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/275 (62%), Positives = 205/275 (74%)

Query: 8   DTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVAS 67
           +TLY  LHKLS   SE+A++ IL TLW TRKTGL + +KSH+QSLL+LPS  QVDPV+A 
Sbjct: 3   ETLYQHLHKLSGTKSEEAIEEILETLWKTRKTGLSTQQKSHLQSLLSLPSLQQVDPVLAC 62

Query: 68  LRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTS 127
           LRSLIRK V ENF+ DD+LKLFPPDLSLDLQS LILL QK+Q QWKE+ SR++ PL G  
Sbjct: 63  LRSLIRKSVHENFSGDDILKLFPPDLSLDLQSLLILLFQKYQNQWKEDLSRDEYPLPGAH 122

Query: 128 VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMP 187
           VSY VK +   SF P  SS     LWP QDD   +FN++DL +    + D NV+ LAP+ 
Sbjct: 123 VSYQVKTNVPLSFTPLPSSETPASLWPRQDDSIAHFNNSDLVSPTPNVVDNNVSCLAPIS 182

Query: 188 LLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLT 247
           L RD  P  N+G LP LKSMTWTMEK N  P NRVA +SLKLQDYTKSP GETEVKFQLT
Sbjct: 183 LQRDVGPLDNLGILPRLKSMTWTMEKRNLAPANRVAFVSLKLQDYTKSPLGETEVKFQLT 242

Query: 248 KDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 282
           +DTLE MLRS+TYI+EQLS+   +S+ P QK+ +Q
Sbjct: 243 RDTLEGMLRSMTYISEQLSNTVGSSAEPLQKRPRQ 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484374|gb|ABK94064.1| unknown [Populus trichocarpa]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 162/285 (56%), Positives = 203/285 (71%), Gaps = 14/285 (4%)

Query: 1   MEGDTGTDTLYLQLHKLSAINS-EQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPG 59
           ME     D+LYLQLHKLS++ + E+ +++ILT+LW TR+TGL S  KS  QSLL++PS  
Sbjct: 1   MEKMEDGDSLYLQLHKLSSVATKEEDVEHILTSLWKTRRTGLPSPLKSRFQSLLDIPSLP 60

Query: 60  QVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEE--SS 117
           Q+DPV+A LRS+IRKCV EN +SD+LLKLFPPDLSLDLQ+ LI LL K+Q QWK++  ++
Sbjct: 61  QLDPVLACLRSIIRKCVHENMSSDELLKLFPPDLSLDLQTTLITLLLKYQIQWKQDDLAT 120

Query: 118 REQQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIAD 177
            EQ  L  TSV     +S  PSF    ++ + T LWP QDD    FNHN      S+IA+
Sbjct: 121 TEQHSLPRTSV---FGISGPPSF----TAEVPTQLWPRQDDTNGRFNHNGFEEPTSMIAE 173

Query: 178 TNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPS 237
           T  +  A   +    +   NM ++P LKSMTWT E  N    NRVA+I+LKLQDY+KS S
Sbjct: 174 TAASVFAQHHV----TALDNMANVPRLKSMTWTAENRNPSSANRVAIITLKLQDYSKSSS 229

Query: 238 GETEVKFQLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 282
           GETEVKFQL++DTLEAMLRS+TYINEQLSS   +SSGPAQKKQKQ
Sbjct: 230 GETEVKFQLSRDTLEAMLRSMTYINEQLSSRVGSSSGPAQKKQKQ 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248898|ref|NP_001239959.1| uncharacterized protein LOC100778299 [Glycine max] gi|255636248|gb|ACU18464.1| unknown [Glycine max]

 Score =  250 bits (638), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 140/277 (50%), Positives = 177/277 (63%), Gaps = 39/277 (14%)

Query: 13  QLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLI 72
           +LHKLS I SE+ L+ +L TLWSTRKTGL  ++KSH QSLL+LPSP  +DPV+A LRSL+
Sbjct: 9   ELHKLSQIESEETLNQMLCTLWSTRKTGLPLSDKSHFQSLLHLPSPSHLDPVLACLRSLV 68

Query: 73  RKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTSVSYHV 132
           RKC  +N   DDLL+LFP DL + LQ+NL+  LQ+++ +WKE+ S     L GT      
Sbjct: 69  RKCAHQNLARDDLLRLFPRDLPIQLQTNLVSALQRNRDRWKEDVSHVIPQLKGT------ 122

Query: 133 KMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDL-------GASASVIADTNVAPLAP 185
            ++ APS            LWP Q+  F       +       G ++    D   A    
Sbjct: 123 -INFAPSL-----------LWPRQEQDFDAVAVPAVVPDVGPSGVNSCFQCDAVGA---- 166

Query: 186 MPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQ 245
                      N+ +LPCLKSMTWTME   S P +RVA+ISLKL DY+KSPSGETE+KFQ
Sbjct: 167 ---------SDNLENLPCLKSMTWTMENRGSSPADRVAIISLKLHDYSKSPSGETEIKFQ 217

Query: 246 LTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 282
           LT+DTLEAMLRS+TYI EQL+++  TSSGPA KKQKQ
Sbjct: 218 LTRDTLEAMLRSMTYIREQLNAV-ETSSGPANKKQKQ 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294463944|gb|ADE77493.1| unknown [Picea sitchensis]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/275 (47%), Positives = 184/275 (66%), Gaps = 6/275 (2%)

Query: 9   TLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASL 68
           +L+  L KL    +++A++ IL +LW TRK+GL SAEK+H+Q LL L S  ++DP+V  L
Sbjct: 4   SLFEHLPKLVRAKTQEAIEYILQSLWRTRKSGLDSAEKAHIQDLLELSSQEELDPIVVCL 63

Query: 69  RSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTSV 128
           R LIR+CV  N + +++ KLFPP+   +LQS L+LLLQK Q++W+E+ +++Q       V
Sbjct: 64  RMLIRRCVHSNTSEEEIHKLFPPEFQSELQSILVLLLQKLQREWREDMAKDQPEWPRKRV 123

Query: 129 SYHVKMSAAPSFRPFLSSVIA--TPLWPHQDDPFTNFNHNDLGASASVIA-DTNVAPLAP 185
            Y VK+S  P+  P   + I+   P+WP  ++     NH +LG    + + + N + L P
Sbjct: 124 VYQVKVS--PTMPPSSPAQISPVPPIWPRLEENRRRSNHCELGIPVGMPSGNLNPSRLVP 181

Query: 186 MPLLRDGSPPGN-MGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKF 244
              L+D S   N + SLP LK+MTW+ME  NS P NRVAVI+LKLQDYTK  SGETE+KF
Sbjct: 182 QQPLQDDSHGDNSLVSLPRLKAMTWSMENQNSTPANRVAVINLKLQDYTKPSSGETEIKF 241

Query: 245 QLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKK 279
           QL++DTLEAMLRS+ YI +QLS+ AA  +GP  KK
Sbjct: 242 QLSRDTLEAMLRSMYYIRDQLSNAAAVQTGPILKK 276

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846210|emb|CAN80630.1| hypothetical protein VITISV_026657 [Vitis vinifera]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 160/222 (72%)

Query: 8   DTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVAS 67
           +TLY  LHKLS   SE+A++ IL TLW TRKTGL + +KSH+QSLL+LPS  QVDPV+A 
Sbjct: 3   ETLYQHLHKLSGTKSEEAIEEILETLWKTRKTGLSTQQKSHLQSLLSLPSLQQVDPVLAC 62

Query: 68  LRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTS 127
           LRSLIRK V ENF+ DD+LKLFPPDLSLDLQS LILL QK+Q QWKE+ SR++ PL G  
Sbjct: 63  LRSLIRKSVHENFSGDDILKLFPPDLSLDLQSLLILLFQKYQNQWKEDLSRDEYPLPGAH 122

Query: 128 VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMP 187
           VSY VK +   SF P  SS     LWP QDD   +FN++DL +    + D NV+ LAP+ 
Sbjct: 123 VSYQVKTNVPLSFTPLPSSETPASLWPRQDDSIAHFNNSDLVSPTPNVVDNNVSCLAPIS 182

Query: 188 LLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKL 229
           L RD  P  N+G LP LKSMTWTMEK N  P NRVA +SLK+
Sbjct: 183 LQRDVGPLDNLGILPRLKSMTWTMEKRNLAPANRVAFVSLKV 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508999|ref|XP_003624788.1| FAR1-related protein [Medicago truncatula] gi|355499803|gb|AES81006.1| FAR1-related protein [Medicago truncatula] gi|388502310|gb|AFK39221.1| unknown [Medicago truncatula]

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/272 (51%), Positives = 178/272 (65%), Gaps = 6/272 (2%)

Query: 15  HKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRK 74
           HKL  I SE+ L++IL+TLW+TRKTGL  ++KSH QSLLNL S  Q+DP++ASLR LIR 
Sbjct: 14  HKLHCIKSEETLNHILSTLWNTRKTGLPPSQKSHFQSLLNLSSSSQLDPLLASLRWLIRI 73

Query: 75  CVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTSVSYHVKM 134
            V  N T D LLK FPP L L LQ+ L+L  Q ++  W  + S++Q  L  T  S  V+ 
Sbjct: 74  FVSRNLTHDQLLKFFPPHLPLQLQTILLLSFQNNRDCWNHDFSQQQDLLQWTDASCQVRT 133

Query: 135 SAAPSFRPFLSSVIATPLWPHQD-DPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGS 193
           +  PSF    SS ++T LWP QD D     N  DLG   S +A+ NV+ L P     D +
Sbjct: 134 NVHPSFSSEPSSSMSTSLWPRQDSDSLARLNCGDLGVPTSPVAEVNVSGL-PTCFQCDIT 192

Query: 194 PPGNM---GSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDT 250
              N+    SLP LKSMTWTME   S P  RVA+ISLKL DY+KS +GET+VKFQLT+DT
Sbjct: 193 SSENLVLEESLPHLKSMTWTMESRGSSPAERVAIISLKLHDYSKSTAGETDVKFQLTRDT 252

Query: 251 LEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 282
           LE ML+S+T++ E+L ++  TSS  A KKQKQ
Sbjct: 253 LETMLKSMTFVGERLRAV-ETSSRLANKKQKQ 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561266|ref|XP_002521644.1| hypothetical protein RCOM_1110800 [Ricinus communis] gi|223539156|gb|EEF40751.1| hypothetical protein RCOM_1110800 [Ricinus communis]

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 90/118 (76%)

Query: 152 LWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTM 211
           LWP QD+    FN ND GA+A  +AD N+  +AP+ L RD  PPGNM  LPCLKSMTW M
Sbjct: 344 LWPRQDEVIRRFNLNDAGAAAQSVADLNLPRMAPVSLQRDDGPPGNMAVLPCLKSMTWVM 403

Query: 212 EKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSLA 269
           E  N  PGNRVAVI+LKLQDY+K+PS E+EVKFQL++ TLE MLRS+ YI+EQLS+ A
Sbjct: 404 ENKNLTPGNRVAVINLKLQDYSKTPSTESEVKFQLSRVTLEPMLRSMAYISEQLSTPA 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790734|emb|CAN70262.1| hypothetical protein VITISV_002225 [Vitis vinifera]

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/126 (61%), Positives = 92/126 (73%)

Query: 144 LSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPC 203
           L+S +   LWP QD+    FN ND G  A  +AD N+  +AP+ L  D  PP NM  LPC
Sbjct: 822 LASDMTPLLWPRQDEVIRRFNLNDAGVPAQPVADLNLPRMAPVSLHHDDGPPENMVVLPC 881

Query: 204 LKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINE 263
           LKSMTW ME  NS PGNRVAVI+LKLQDY+K+PSGE+EVKFQL++ TLE MLRS+ YINE
Sbjct: 882 LKSMTWVMENKNSTPGNRVAVINLKLQDYSKTPSGESEVKFQLSRVTLEPMLRSMAYINE 941

Query: 264 QLSSLA 269
           QLS+ A
Sbjct: 942 QLSTPA 947

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2059304	851	FRS3 "FAR1-related sequence 3"	0.446	0.148	0.566	5.3e-31

TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 5.3e-31, P = 5.3e-31
 Identities = 72/127 (56%), Positives = 89/127 (70%)

Query:   144 LSSVIATPL-WPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLP 202
             LS+   TPL WP QD+    FN ND GA A  ++D N+  +AP+ L RD + P NM +LP
Sbjct:   663 LSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVSLHRDDTAPENMVALP 722

Query:   203 CLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYIN 262
             CLKS+TW ME  N+ PG RVAVI+LKL DY K PS + +VKFQL+  TLE MLRS+ YI+
Sbjct:   723 CLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAYIS 782

Query:   263 EQLSSLA 269
             EQLSS A
Sbjct:   783 EQLSSPA 789

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
cd04757	108	Commd9 COMM_Domain containing protein 9. The COMM	99.9
cd04756	176	Commd8 COMM_Domain containing protein 8. The COMM	99.51
cd04750	166	Commd2 COMM_Domain containing protein 2. The COMM	99.48
PF07258	178	HCaRG: HCaRG protein; InterPro: IPR009886 This fam	99.39
cd04749	174	Commd1_MURR1 COMM_Domain containing protein 1, als	99.03
cd04758	186	Commd10 COMM_Domain containing protein 10. The COM	98.52
cd04752	174	Commd4 COMM_Domain containing protein 4. The COMM	98.5
cd04748	87	Commd COMM_Domain, a family of domains found at th	97.91
cd04753	110	Commd5_HCaRG COMM_Domain containing protein 5, als	97.15
cd04755	180	Commd7 COMM_Domain containing protein 7. The COMM	96.77
cd04751	95	Commd3 COMM_Domain containing protein 3. The COMM	93.99

>cd04757 Commd9 COMM_Domain containing protein 9

Probab=99.90  E-value=9.4e-24  Score=173.24  Aligned_cols=103  Identities=23%  Similarity=0.416  Sum_probs=90.0

Q ss_pred             ccHHHHHHHHHHHHHhhHHHHHHHhhhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCc
Q 023398           93 LSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGAS  171 (282)
Q Consensus        93 Fh~nLknLLTkIi~en~~~WR~ea~~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~  171 (282)
                      ||++|+++|++++++|.+.||+.+..+|+|+|+++ ++||||+.+                                   
T Consensus         1 f~~~l~~lL~~~~le~r~~~r~~~~~~~~slp~l~dldWRldv~i-----------------------------------   45 (108)
T cd04757           1 FHSNLKNLLTKIILENRDKWRSEASENQISLPKLVDHDWRVDIKT-----------------------------------   45 (108)
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHHhcCCCchhhhCccceehhHH-----------------------------------
Confidence            89999999999999999999999999999999999 999999966                                   


Q ss_pred             ccccccCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCC----cceEEEEec
Q 023398          172 ASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSG----ETEVKFQLT  247 (282)
Q Consensus       172 ~~~v~~~~~~~~~p~~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~g----e~evkfqls  247 (282)
                          |..                                   ..+..+.|+++++||++|.++ ..|    .+.|.|||+
T Consensus        46 ----sS~-----------------------------------sl~r~~~P~vll~lkv~~~~~-~~~~~~~~~~v~~ELs   85 (108)
T cd04757          46 ----SSD-----------------------------------SLGRMAVPTCLLQMKIQEAPS-LCGLLPPLSTLTMELS   85 (108)
T ss_pred             ----HHH-----------------------------------HHHhhhcCeEEEEEEeecCcc-ccccCCCcceEEEEcC
Confidence                222                                   233445677899999999766 334    459999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhc
Q 023398          248 KDTLEAMLRSLTYINEQLSSLAA  270 (282)
Q Consensus       248 kdTLe~ML~~m~~Ir~Qls~~~~  270 (282)
                      ||||++||+|+++|||||+++|+
T Consensus        86 Ke~l~tml~~L~~i~~QL~~va~  108 (108)
T cd04757          86 KETLDTMLDGLGRIRDQLSAVAQ  108 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999874

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04756 Commd8 COMM_Domain containing protein 8

Probab=99.51  E-value=6.8e-14  Score=122.12  Aligned_cols=145  Identities=19%  Similarity=0.225  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcCCCCccHHHHHHHHH
Q 023398           24 QALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLIL  103 (282)
Q Consensus        24 d~VrqIcq~~f~tR~tgl~~~l~~~~~~~LsL~S~~EadqLl~aLr~Lir~~v~~nlsse~Il~LFPedFh~nLknLLTk  103 (282)
                      ++|.+||...+++.      +..+     ..+ +.+|+.+++++|+.++|.++|+|++++++..-+     ++|.+..++
T Consensus        20 ~vv~~l~~~~~~~~------~~~~-----~~~-s~~e~~~~l~~l~~i~~~a~~~~l~~~~l~~~L-----~~L~~~~~~   82 (176)
T cd04756          20 RVVDGVCGRAYPRY------QDYS-----AIW-SLEEWTEVLESLATLFKQAVGKNSNDEEAKAQL-----SDLSSSHQE   82 (176)
T ss_pred             HHHHHHhcccCCch------hhhc-----ccC-CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH-----hcCCHHHHH
Confidence            56777777665542      1111     166 779999999999999999999999997666666     379999999


Q ss_pred             HHHHhhHHHHHH---Hh---hhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCcccccc
Q 023398          104 LLQKHQKQWKEE---SS---REQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIA  176 (282)
Q Consensus       104 Ii~en~~~WR~e---a~---~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~~~~v~  176 (282)
                      .|.+....||++   +.   ..|+|+|+|+ ++|||++.+.                                       
T Consensus        83 a~~~~~~~~~~ei~~~L~~~~~~is~~~L~d~dWrv~l~lS---------------------------------------  123 (176)
T cd04756          83 ALLKCVKSRKEEIRQALVNKTNSISSAQLQDFDWQLKLALS---------------------------------------  123 (176)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccCchhhccccCeeeeeec---------------------------------------
Confidence            999999999999   66   6789999999 9999999661                                       


Q ss_pred             cCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCCcceEEEEecHHHHHHHHH
Q 023398          177 DTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLR  256 (282)
Q Consensus       177 ~~~~~~~~p~~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTLe~ML~  256 (282)
                                                         .+..+....+.+.++||+++.    ...+.|.|++||++|..|++
T Consensus       124 -----------------------------------Sd~~~~l~~P~~~L~L~v~~~----~~~~~v~~Ems~eel~~li~  164 (176)
T cd04756         124 -----------------------------------SDKLSSLQEPLLNLDLDVKEN----GILKPVSIEMNKEELQNLIS  164 (176)
T ss_pred             -----------------------------------hhhHHHhcCCeEEEEEEecCC----CCeeEEEEEEcHHHHHHHHH
Confidence                                               112233445677999999842    22468999999999999999


Q ss_pred             HHHHHHH
Q 023398          257 SLTYINE  263 (282)
Q Consensus       257 ~m~~Ir~  263 (282)
                      ++.-.+.
T Consensus       165 ~Le~a~~  171 (176)
T cd04756         165 SLEAANK  171 (176)
T ss_pred             HHHHHHH
Confidence            9987765

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04750 Commd2 COMM_Domain containing protein 2

Probab=99.48  E-value=6.4e-13  Score=114.85  Aligned_cols=156  Identities=15%  Similarity=0.121  Sum_probs=131.1

Q ss_pred             HHHHhhcccCCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhh-hhhcCCCCccHHHHHHHHHHHHH
Q 023398           29 ILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDD-LLKLFPPDLSLDLQSNLILLLQK  107 (282)
Q Consensus        29 Icq~~f~tR~tgl~~~l~~~~~~~LsL~S~~EadqLl~aLr~Lir~~v~~nlsse~-Il~LFPedFh~nLknLLTkIi~e  107 (282)
                      .|.-++-+-..|.-....+.+|..|++ +++++++++.+|+.|+..++..|+++++ ...|++-.|+.++.++|.++..+
T Consensus         2 ~~~~a~~~l~~g~n~~~~~~~A~~l~i-~~~~vk~~v~aL~~ll~~a~K~~l~~~~~~~~L~~l~~~~e~~~~l~~~y~~   80 (166)
T cd04750           2 FCKLAIEFLFKGINQKKYEGAARKLEV-EVETVQHGVEALVYLLIESTKLKLSERDFQDSIEFLGFSDDLNEILLQLYES   80 (166)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            455566666777888999999999999 9999999999999999999999999944 45699999999999999999999


Q ss_pred             hhHHHHHHHhhhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCcccccccCCCCCCCCC
Q 023398          108 HQKQWKEESSREQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPM  186 (282)
Q Consensus       108 n~~~WR~ea~~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~~~~v~~~~~~~~~p~  186 (282)
                      |.+.||+.+...++++|+++ ++||||+.+.                                       .         
T Consensus        81 ~~~~l~~~l~~~~~~lp~l~dleWRvDv~is---------------------------------------S---------  112 (166)
T cd04750          81 NRKEIRNILKELSPDLPHYHNLEWRLDVQIA---------------------------------------S---------  112 (166)
T ss_pred             HHHHHHHHHHhcCCCCccccCCceeEEeEEc---------------------------------------c---------
Confidence            99999999999999999999 9999999762                                       1         


Q ss_pred             CcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCCcceEEEEecHHHHHHHHHHHHHHH
Q 023398          187 PLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYIN  262 (282)
Q Consensus       187 ~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTLe~ML~~m~~Ir  262 (282)
                                                +.+...++++..++||+++...   ....+.||.+-++|--|+..+..-.
T Consensus       113 --------------------------~~l~~~~~P~i~mkL~l~~~~~---~~~~~~l~td~~~l~~l~~eLe~Al  159 (166)
T cd04750         113 --------------------------RSLRSQVKPVITMKLHLEDENK---KIETHLLQTDPANLVHLTQTLEQAL  159 (166)
T ss_pred             --------------------------hhhHhhcCceEEEEEEecCCCC---cccceEEEeCHHHHHHHHHHHHHHH
Confidence                                      1122344566689999987544   3448999999999998888776533

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>PF07258 HCaRG: HCaRG protein; InterPro: IPR009886 This family consists of several mammalian HCaRG(hypertension-related, calcium-regulated gene) proteins

Probab=99.39  E-value=1.4e-15  Score=125.89  Aligned_cols=173  Identities=20%  Similarity=0.283  Sum_probs=60.2

Q ss_pred             hhcCCCHHHHHHHHHHhhcccCCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcC-CCCccH
Q 023398           17 LSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLF-PPDLSL   95 (282)
Q Consensus        17 LlKA~SKd~VrqIcq~~f~tR~tgl~~~l~~~~~~~LsL~S~~EadqLl~aLr~Lir~~v~~nlsse~Il~LF-PedFh~   95 (282)
                      |+..=|++.++++|+.++.....+.....+..++..+++ +.++++.++.|+..+++.+++++++.+++.+.+ .-.|+.
T Consensus         3 ~l~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~~a~k~~~~~~~l~~~L~~lgl~~   81 (178)
T PF07258_consen    3 LLSKLSSEKFKQLCKRAIDFLLGGDNESEISKLAEDLQL-SEEELKQLVAALSYLLREAAKYDLSEEDLRQELEQLGLPE   81 (178)
T ss_dssp             HHHHT---SSS--SS--HHHHHHHH-SS----------S--SSTHHHHHTTTSTTHHHHTTT---TTTSTTTHHHTT--H
T ss_pred             chhhCCHHHHHHHHHHHHHHHccCCCcccccchhhcccC-CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCH
Confidence            344456677888888888886444444488999999999 999999999999999999999999997777666 446999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCcccc
Q 023398           96 DLQSNLILLLQKHQKQWKEESSREQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASV  174 (282)
Q Consensus        96 nLknLLTkIi~en~~~WR~ea~~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~~~~  174 (282)
                      +....|.+.+.+|...|+........++|+++ ++||+++.+.-+                                   
T Consensus        82 e~~~~l~~~~~~~~~~l~~~l~~~~~~~~~l~d~~Wrl~~~~~s~-----------------------------------  126 (178)
T PF07258_consen   82 EHAEALCKVYEQNREELRKALSSTSFSFPHLVDVDWRLDVQVSSS-----------------------------------  126 (178)
T ss_dssp             HHHHHHTTTTTTTSSSSS--------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHhcccccccccCCCcEEEEeeeccc-----------------------------------
Confidence            99999999999999999999999999999998 999999966211                                   


Q ss_pred             cccCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCCcceEEEEecHHHHHHH
Q 023398          175 IADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAM  254 (282)
Q Consensus       175 v~~~~~~~~~p~~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTLe~M  254 (282)
                                                             .......++++++||+++.   ......+.|+++++.|..|
T Consensus       127 ---------------------------------------~~~~~~~p~~~l~L~~~~~---~~~~~~~~~e~~~~~l~~l  164 (178)
T PF07258_consen  127 ---------------------------------------SLAKINEPVVILQLKTQNG---NGKEETVTFELSKEELQDL  164 (178)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------HhhhccCcEEEEEEEecCC---CCcCceEEEEECHHHHHHH
Confidence                                                   1112334667899999985   5667889999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 023398          255 LRSLTYINEQLSS  267 (282)
Q Consensus       255 L~~m~~Ir~Qls~  267 (282)
                      +..|..|++|+..
T Consensus       165 ~~~L~~a~~~l~~  177 (178)
T PF07258_consen  165 LNELKDAQKQLDQ  177 (178)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998864

HCaRG is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. HCaRG is a nuclear protein potentially involved in the control of cell proliferation [].; PDB: 2H2M_A.

>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1

Probab=99.03  E-value=7.4e-09  Score=91.60  Aligned_cols=162  Identities=13%  Similarity=0.194  Sum_probs=119.8

Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcC------CCCccHHHHH
Q 023398           26 LDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLF------PPDLSLDLQS   99 (282)
Q Consensus        26 VrqIcq~~f~tR~tgl~~~l~~~~~~~LsL~S~~EadqLl~aLr~Lir~~v~~nlsse~Il~LF------PedFh~nLkn   99 (282)
                      ++.|+|-.|=--......-+...+..  ++ .++|.+.+++.++.+|..+++.|...+++-...      =...+.+=-.
T Consensus         5 L~gl~q~~~~~~~~ite~~l~~~l~~--~~-~~ed~ka~~ak~~~ii~saa~~dvD~~~L~~~Lt~q~~qQ~Gl~~eha~   81 (174)
T cd04749           5 LNGIAQKEYYGNAEITEELLRSELYP--ED-PLEEFRALHNKMRGLLKSIASADMDINQLEAFLTAQTKKQGGITSLQAA   81 (174)
T ss_pred             HHHHHHHHHccccchHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHhcCCChHHHH
Confidence            34566665433123333445555555  56 589999999999999999999999886655444      1112222245


Q ss_pred             HHHHHHHHhhHHHHHHHhhhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCcccccccC
Q 023398          100 NLILLLQKHQKQWKEESSREQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADT  178 (282)
Q Consensus       100 LLTkIi~en~~~WR~ea~~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~~~~v~~~  178 (282)
                      -|+|--..|...=|+-..++-.-+|+|+ ++||||+++.                                         
T Consensus        82 ~l~Kfwk~~~~klr~~l~~~S~~~~~L~~l~WRVD~~ts-----------------------------------------  120 (174)
T cd04749          82 VIAKFWKVHKKKIRESLLAQSRWENSLRGLSWRVDLKTQ-----------------------------------------  120 (174)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhhcccccCCCCeeeeecc-----------------------------------------
Confidence            6777777888888888888888999999 9999999762                                         


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCCcceEEEEecHHHHHHHHHHH
Q 023398          179 NVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSL  258 (282)
Q Consensus       179 ~~~~~~p~~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTLe~ML~~m  258 (282)
                                                       .+...+.+.++|+++||+++..+   +...|.|++++++++.||+.|
T Consensus       121 ---------------------------------S~~~~evn~P~~~l~L~v~~~~~---~~~~v~~emd~ek~~~lL~eL  164 (174)
T cd04749         121 ---------------------------------SRHIAQINSPVAIVELELGKTGQ---ESEFVCLEFDEAKVNRVLKQL  164 (174)
T ss_pred             ---------------------------------cchhhhccCCeEEEEEeeccCCC---CCceEEEEecHHHHHHHHHHH
Confidence                                             11233556788999999988544   444999999999999999999


Q ss_pred             HHHHHHhhh
Q 023398          259 TYINEQLSS  267 (282)
Q Consensus       259 ~~Ir~Qls~  267 (282)
                      ..|++++++
T Consensus       165 k~iq~~m~~  173 (174)
T cd04749         165 AEIQESLDA  173 (174)
T ss_pred             HHHHHHHhc
Confidence            999999874

Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04758 Commd10 COMM_Domain containing protein 10

Probab=98.52  E-value=7e-06  Score=71.85  Aligned_cols=170  Identities=14%  Similarity=0.226  Sum_probs=122.4

Q ss_pred             cCCCHHHHHHHHHHhhccc----CCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcCCC--C
Q 023398           19 AINSEQALDNILTTLWSTR----KTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPP--D   92 (282)
Q Consensus        19 KA~SKd~VrqIcq~~f~tR----~tgl~~~l~~~~~~~LsL~S~~EadqLl~aLr~Lir~~v~~nlsse~Il~LFPe--d   92 (282)
                      +.=+.+..+++|+..|..-    ...-+....+.++....+ +..++.-++.++.-+.+.++++|++.+.+..=. +  .
T Consensus         9 n~l~~~~f~~ll~~i~~~l~~~~~~~~s~~~~~kl~~~~~~-~~~~l~~vi~~l~~il~~A~k~nl~~~~L~~~L-~~l~   86 (186)
T cd04758           9 NSIDTEKFPRLLSRLFQKLHLKAERSFSEEEEEKLQEAFKL-LSQDLKLLLETISFILEQAAYHNLKPSNLQQQL-RNIL   86 (186)
T ss_pred             hcCCHHHHHHHHHHHHHHhcccccCCccHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHcC
Confidence            3334556788888876653    122237778889999999 999999999999999999999999975544422 1  2


Q ss_pred             ccHHHHHHHHHHHHHhhHHHHHHHhhhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCc
Q 023398           93 LSLDLQSNLILLLQKHQKQWKEESSREQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGAS  171 (282)
Q Consensus        93 Fh~nLknLLTkIi~en~~~WR~ea~~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~  171 (282)
                      +.++-...+.+...++..+=++-.....++.|+|. |+|||++-+.=|                                
T Consensus        87 l~~e~~~~~~~~w~~~~~~l~~~l~~~~l~~~~L~D~~Wrl~~~~sSs--------------------------------  134 (186)
T cd04758          87 LLEDKASAFVNAWEAEGEDVLEKLRSRILAPNQLEDVSWRLNLQMSSS--------------------------------  134 (186)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccceEEEEEccc--------------------------------
Confidence            33444455566666666665666677779999999 999999965200                                


Q ss_pred             ccccccCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCCcceEEEEecHHHH
Q 023398          172 ASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTL  251 (282)
Q Consensus       172 ~~~v~~~~~~~~~p~~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTL  251 (282)
                                                                ..+.-..+.++++||+.+...   ....|.|++|++-|
T Consensus       135 ------------------------------------------~~~~~~~P~~~L~L~~~~~~g---~~e~v~~E~t~~el  169 (186)
T cd04758         135 ------------------------------------------TQAKLKSPLAVLELGVTSEDG---NLEKINLEFNHEEL  169 (186)
T ss_pred             ------------------------------------------hhhhhcCCcEEEEeecCCCCC---CccceEEEEcHHHH
Confidence                                                      011111244689999987331   34689999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 023398          252 EAMLRSLTYINEQLSS  267 (282)
Q Consensus       252 e~ML~~m~~Ir~Qls~  267 (282)
                      -..+..|..|+.||-+
T Consensus       170 ~~l~~~le~~q~~ld~  185 (186)
T cd04758         170 LEFYNQLESIQEQLDS  185 (186)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999999853

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04752 Commd4 COMM_Domain containing protein 4

Probab=98.50  E-value=7.2e-06  Score=71.42  Aligned_cols=161  Identities=16%  Similarity=0.214  Sum_probs=121.1

Q ss_pred             HHHHhhccc-CCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhh-cCCCCccHHHHHHHHHHHH
Q 023398           29 ILTTLWSTR-KTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLK-LFPPDLSLDLQSNLILLLQ  106 (282)
Q Consensus        29 Icq~~f~tR-~tgl~~~l~~~~~~~LsL~S~~EadqLl~aLr~Lir~~v~~nlsse~Il~-LFPedFh~nLknLLTkIi~  106 (282)
                      +|+..-..- +...+.+-+...+....+ +..+++-+++||+-+++.++++|++.+++.. |--=.|+.+-...+.....
T Consensus         9 ~~~~v~~~~~~~~~~~~~~~kl~~~~~~-~~~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp~e~~~~l~~~~~   87 (174)
T cd04752           9 LCAQVLKDLLGEGIDYEKVLKLTADAKF-ESGDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLPKEHATSLCRSYE   87 (174)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhCC-CHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            344443322 344667888888889999 8899999999999999999999999855554 3222566677777888888


Q ss_pred             HhhHHHHHHHhhhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCcccccccCCCCCCCC
Q 023398          107 KHQKQWKEESSREQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAP  185 (282)
Q Consensus       107 en~~~WR~ea~~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~~~~v~~~~~~~~~p  185 (282)
                      +|.+.=|.-....-+++|+++ ++|||++-+..|                                              
T Consensus        88 ~~~~~l~~~l~~~~l~~~~L~d~~WRld~~lsSs----------------------------------------------  121 (174)
T cd04752          88 EKQSKLQESLRANSLRLSRLESVDWRVDYILSSS----------------------------------------------  121 (174)
T ss_pred             HHHHHHHHHHHhcCCCCCcccccceeeEEEEcch----------------------------------------------
Confidence            999998888888889999999 999999855211                                              


Q ss_pred             CCcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCCcceEEEEecHHHHHHHHHHHHHHHHHh
Q 023398          186 MPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQL  265 (282)
Q Consensus       186 ~~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTLe~ML~~m~~Ir~Ql  265 (282)
                                                  ....-.+|.+.++|++.+. ... ..++|.|+++.+.|-.++..|...+..+
T Consensus       122 ----------------------------~l~~~~~P~~~l~L~v~~~-~~~-~~~~v~~e~s~~ql~~L~~eLe~A~~~m  171 (174)
T cd04752         122 ----------------------------ELQEVNEPLVQLRLKVRNA-DTG-EITPHPFSVSADKFRVLLAELKQAQTLM  171 (174)
T ss_pred             ----------------------------hhhhcCCCeEEEEEeeecC-CCC-CcceEEEEecHHHHHHHHHHHHHHHHHH
Confidence                                        1112234556788888762 222 2358999999999999999999888765


Q ss_pred             h
Q 023398          266 S  266 (282)
Q Consensus       266 s  266 (282)
                      -
T Consensus       172 ~  172 (174)
T cd04752         172 E  172 (174)
T ss_pred             h
Confidence            4

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04748 Commd COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins

Probab=97.91  E-value=4.7e-05  Score=58.98  Aligned_cols=46  Identities=28%  Similarity=0.411  Sum_probs=38.9

Q ss_pred             CCCcceEEEeecccCCCCCCCcceEEEEecHHHHHHHHHHHHHHHHHh
Q 023398          218 PGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQL  265 (282)
Q Consensus       218 pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTLe~ML~~m~~Ir~Ql  265 (282)
                      -..++|+++||+.++...  ....|.||++.+.|..++..|..|++||
T Consensus        42 ~~~P~~~~~L~l~~~~~~--~~~~v~~E~~~~~l~~l~~~L~~a~~~l   87 (87)
T cd04748          42 VKQPTILVQLKLQVGDNN--SSEKICFEMTKEELQNFLNKLKKIKAQL   87 (87)
T ss_pred             hhCCeEEEEEEEecCCCC--ccceEEEEeCHHHHHHHHHHHHHHHhcC
Confidence            345778999999986542  3568999999999999999999999986

Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. HCaRG, a nuclear protein that might be involved in cell proliferation, is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals.

>cd04753 Commd5_HCaRG COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene)

Probab=97.15  E-value=0.0031  Score=52.21  Aligned_cols=44  Identities=11%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             ccHHHHHHHHHHHHHhhHHHHHHHhhhcc-cCCcce-eeeeeeecC
Q 023398           93 LSLDLQSNLILLLQKHQKQWKEESSREQQ-PLSGTS-VSYHVKMSA  136 (282)
Q Consensus        93 Fh~nLknLLTkIi~en~~~WR~ea~~~Qv-SLPrL~-~~~~v~~~~  136 (282)
                      |+.+.-..|.+.+..+...|.++++.+|. ++|+++ +.||||+.+
T Consensus         4 lp~E~~~dL~~~~y~~~r~~l~~~l~~~~~rlp~l~~l~WRVDv~l   49 (110)
T cd04753           4 IPEELITDLASVVYGQRRPLLESGALQKGVRLPHLEDFKWRVDVAI   49 (110)
T ss_pred             CCHHHHHHHHHHHHhccHHHHHHHHHHhccCCcccccCcceEEEEE
Confidence            45566777776777777889999888887 999996 999999976

HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04755 Commd7 COMM_Domain containing protein 7

Probab=96.77  E-value=0.066  Score=47.97  Aligned_cols=163  Identities=15%  Similarity=0.174  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhhccc---CC-CCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcCCCC--ccHHH
Q 023398           24 QALDNILTTLWSTR---KT-GLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPD--LSLDL   97 (282)
Q Consensus        24 d~VrqIcq~~f~tR---~t-gl~~~l~~~~~~~LsL~S~~EadqLl~aLr~Lir~~v~~nlsse~Il~LFPed--Fh~nL   97 (282)
                      +...++|+-.|..=   +. .......+.++..+++ +..+++-++.+|.-+.+-++|+|++.+.+..=+ +.  .+.+=
T Consensus        10 ~~f~~l~~~i~~~L~~~k~~~~~~~~~~ef~~~~~~-~~~dlk~vi~~l~fi~~~A~k~nv~~~~L~~eL-~~lgL~~ek   87 (180)
T cd04755          10 QQFSRLTEILFEFLLEPKESERLLNQLDEFAGENGI-SLGPLKNIVKSILLVPNGALKRNLTAEQLREDL-IQLGLSEEK   87 (180)
T ss_pred             HHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-HHcCCCHHH
Confidence            44445555555442   11 2224455668999999 999999999999999999999999985543211 00  11111


Q ss_pred             HHHHHHHHHHhhHHHHHHHhhhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCcccccc
Q 023398           98 QSNLILLLQKHQKQWKEESSREQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIA  176 (282)
Q Consensus        98 knLLTkIi~en~~~WR~ea~~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~~~~v~  176 (282)
                      ..-+.+.-.++.+.=++-+..+-..+.+|+ +.|||++-+.-|                                     
T Consensus        88 a~~~~~~w~~~~~~L~~~~~~~tL~~~qL~d~~Wr~~~~~sSS-------------------------------------  130 (180)
T cd04755          88 ASYFSEQWKQHYSTLSRSAVGQTLMVNQLVDMEWKFGVTAGSS-------------------------------------  130 (180)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHcccCccccccccceeeeEecch-------------------------------------
Confidence            122333333333333333433337888998 999999855200                                     


Q ss_pred             cCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCCcceEEEEecHHHHHHHHH
Q 023398          177 DTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLR  256 (282)
Q Consensus       177 ~~~~~~~~p~~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTLe~ML~  256 (282)
                                                       ..+ +..+     ++|+||+... +.. ....|-|++|.+-+--.+.
T Consensus       131 ---------------------------------~~~-~~~~-----p~vqLkl~~~-~~~-~~e~v~~E~t~~qF~~f~~  169 (180)
T cd04755         131 ---------------------------------ELQ-KVGS-----IFLQLKLVVR-KGN-QTENVYMELTLPQFYSFLH  169 (180)
T ss_pred             ---------------------------------hhh-hcCC-----cEEEEEEEec-CCC-CceeEEEEEcHHHHHHHHH
Confidence                                             000 0011     3888999863 211 2247779999999999999


Q ss_pred             HHHHHHHHhh
Q 023398          257 SLTYINEQLS  266 (282)
Q Consensus       257 ~m~~Ir~Qls  266 (282)
                      .|..|+.++.
T Consensus       170 elk~a~a~me  179 (180)
T cd04755         170 EMERAKASLE  179 (180)
T ss_pred             HHHHHHHHhc
Confidence            9998887753

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04751 Commd3 COMM_Domain containing protein 3

Probab=93.99  E-value=0.92  Score=36.35  Aligned_cols=89  Identities=11%  Similarity=0.219  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhHHHHHHHhhhcccCCcce-eeeeeeecCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCcccccccC
Q 023398          100 NLILLLQKHQKQWKEESSREQQPLSGTS-VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADT  178 (282)
Q Consensus       100 LLTkIi~en~~~WR~ea~~~QvSLPrL~-~~~~v~~~~~~s~~~~~~~~~~~~lwp~q~~~~~~~n~~d~~~~~~~v~~~  178 (282)
                      .|.+...+|...=|.-....=.++|+++ |+||++.-+..+                           .+          
T Consensus         2 ~l~~~Y~~~r~~l~~~l~~~~~~~p~l~dv~WRld~~lsS~---------------------------~l----------   44 (95)
T cd04751           2 IFAKQYQKKKEVLENKLKSIGISFPHITDVNWRLDYVVSSK---------------------------HL----------   44 (95)
T ss_pred             hHHHHHHHhHHHHHHHHHHhCCCCCceecCceEEEEEEccc---------------------------cc----------
Confidence            4677778888888887777778999999 999999965210                           00          


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCccccchhhhhcccCCCCCCcceEEEeecccCCCCCCCcceEEEEecHHHHHHHHHHH
Q 023398          179 NVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSL  258 (282)
Q Consensus       179 ~~~~~~p~~~~~d~~~~~n~~~~p~lksmt~~~e~~~s~pa~~vAvinlKlqd~~~~~~ge~evkfqlskdTLe~ML~~m  258 (282)
                                                           .....++-.|+|+.++.    .+..++.|+.+-+.|--|+..|
T Consensus        45 -------------------------------------~~~~~p~~~i~L~~~~~----~~~~~i~f~c~~e~L~~Li~~L   83 (95)
T cd04751          45 -------------------------------------GKVNQPIYLIQLSTENG----ENKPDINFTCTLEQLQDLVNKL   83 (95)
T ss_pred             -------------------------------------CcccceeEEEEEeccCC----CCcceEEEEeCHHHHHHHHHHH
Confidence                                                 01122233467776642    2266999999999999999988


Q ss_pred             HHHHHHhh
Q 023398          259 TYINEQLS  266 (282)
Q Consensus       259 ~~Ir~Qls  266 (282)
                      .-+..+.-
T Consensus        84 k~A~~~~e   91 (95)
T cd04751          84 KDAAKNIE   91 (95)
T ss_pred             HHHHHHHH
Confidence            87776654

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00