Citrus Sinensis ID: 023443


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
cccccHHHHHccccccccccccEEEcccccccHHHccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA**********************************************QIIAIKAAIVNSQTLEEVARLEKV**********************************************************
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MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
U2 small nuclear ribonucleoprotein A' This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.confidentP43333
Probable U2 small nuclear ribonucleoprotein A' This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.probableQ9V4Q8
U2 small nuclear ribonucleoprotein A' Involved in pre-mRNA splicing.probableQ4WV66

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2Z63, chain A
Confidence level:very confident
Coverage over the Query: 19-152
View the alignment between query and template
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Template: 2Z63, chain A
Confidence level:very confident
Coverage over the Query: 16-154,174-225
View the alignment between query and template
View the model in PyMOL
Template: 1ZIW, chain A
Confidence level:very confident
Coverage over the Query: 15-247
View the alignment between query and template
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Template: 4ECO, chain A
Confidence level:very confident
Coverage over the Query: 3-253
View the alignment between query and template
View the model in PyMOL