Citrus Sinensis ID: 023443

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
Secondary Structure (PSIPRED)
cccccHHHHHccccccccccccEEEcccccccHHHccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHccEEEcccccEEEEcccccccccccHHHHcccccEEEcccccccEEccccccccccEEEcccccccEEcccHHHHcccccEEEccccccccHHHHHHHHHcccccEEEccccHHHHcccHHHHHHHHcccccEEccEEccHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHccccccccccccc
Coil and Loop (DISEMBL)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIEnlgatedqfdtidlsdneivklenmphlnrlgtliinnnritrinpnigeflPKLHTLVLTNNRLVnlveidpltslpklqflslldnsitkkpnyrlYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMktlmpvevpnvseeeeqqtpkvvaptpEQIIAIKAAIVNSQTLEEVARLEKVLKsgqlpadlkipdydsgskdvkendekmvpdveneadvepnnvenqknDELAAMEQD
Flexible Loop (DISEMBL)
mvrltadliwksphffNAIKERELDLRGNKIAVIEnlgatedqfdtiDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPltslpklqfLSLLDNsitkkpnyrlyvihklkslrvldfkKERMEAAslfaseemeEEAKKESMKTLMPVEVPnvseeeeqqtpkvvaptpEQIIAIKAAIVNSQTLEEVARLEKVlksgqlpadlkipdydsgskdvkendeKMVPDveneadvepnnvenqkndelaameqd
Low Complexity Region (SEG)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHlnrlgtliinnnritrinpnigEFLPKlhtlvltnnrlvnlvEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERmeaaslfaseemeeeakkesmkTLMpvevpnvseeeeQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
Disordered region (IsUnstruct)
***LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFK****************************************************QIIAIKAAIVNSQTLEEVARLEKV**********************************************************
Disordered Region (DISOPRED)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA********************************************************************************************************************************
Disordered Region (DISEMBL)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASL***************KTLMPVEV***************APTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
Disordered Region (DISPRO)
**RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE**************************PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK***********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
P43333	249	U2 small nuclear ribonucl	yes	no	0.826	0.935	0.802	1e-104
Q4R8Y8	255	U2 small nuclear ribonucl	N/A	no	0.794	0.878	0.497	3e-54
P09661	255	U2 small nuclear ribonucl	yes	no	0.794	0.878	0.497	3e-54
P57784	255	U2 small nuclear ribonucl	yes	no	0.794	0.878	0.493	2e-53
Q9BLB6	253	Probable U2 small nuclear	yes	no	0.804	0.897	0.438	1e-46
Q9V4Q8	265	Probable U2 small nuclear	yes	no	0.819	0.871	0.428	7e-46
Q9USX8	239	U2 small nuclear ribonucl	yes	no	0.815	0.962	0.399	7e-39
Q4WV66	253	U2 small nuclear ribonucl	yes	no	0.851	0.948	0.390	1e-37
Q4P5F9	246	U2 small nuclear ribonucl	N/A	no	0.808	0.926	0.386	9e-33
Q7S9P4	252	U2 small nuclear ribonucl	N/A	no	0.847	0.948	0.356	5e-28

>sp|P43333|RU2A_ARATH U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/243 (80%), Positives = 213/243 (87%), Gaps = 10/243 (4%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTL+INNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPL S+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDF----KKERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKK NYRLYVIHKLKSLRVLDF     KER EAASLF+S+E EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 177

Query: 177 PVEVPNVSEEEEQ-QTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
             EV  VSE  E  +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ LK GQ+PA L 
Sbjct: 178 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLI 235

Query: 236 IPD 238
           IPD
Sbjct: 236 IPD 238

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4R8Y8|RU2A_MACFA U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1

 Score =  212 bits (539), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 154/239 (64%), Gaps = 15/239 (6%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAK--KESMKT 174
           L N +T K +YRLYVI+K+  +RVLDF+    KER EA  +F  +   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 175 LMP-VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 232
             P   +P           K   P+P  + AIK AI N+ TL EV RL+ +L+SGQ+P 
Sbjct: 181 FNPGAGLPT--------DKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG 231

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Macaca fascicularis (taxid: 9541)

>sp|P09661|RU2A_HUMAN U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2

 Score =  212 bits (539), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 154/239 (64%), Gaps = 15/239 (6%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAK--KESMKT 174
           L N +T K +YRLYVI+K+  +RVLDF+    KER EA  +F  +   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 175 LMP-VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 232
             P   +P           K   P+P  + AIK AI N+ TL EV RL+ +L+SGQ+P 
Sbjct: 181 FNPGAGLPT--------DKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG 231

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Homo sapiens (taxid: 9606)

>sp|P57784|RU2A_MOUSE U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 153/239 (64%), Gaps = 15/239 (6%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAK--KESMKT 174
           L N +T K +YRLYVI+K+  +RVLDF+    KER EA  +F  +   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 175 LMP-VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 232
             P   +P           K   P+   + AIK AI N+ TL EV RL+ +L+SGQ+P 
Sbjct: 181 FNPGAGLPT--------DKKKGGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG 231

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Mus musculus (taxid: 10090)

>sp|Q9BLB6|RU2A_CAEEL Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=sap-1 PE=1 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 148/237 (62%), Gaps = 10/237 (4%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LP L TL LTNN +  L +I+PL    KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK----ERMEAASLF--ASEEMEEEAKKESMKT 174
           + N IT K NYR+Y+I+KL ++RV+DF +    ER  A  +F   S +   +A ++S+ T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231
             P E+    E  E  +      T E    IK AI N+++L EV  L+ +L SG++P
Sbjct: 181 EDPSEI----EPNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9V4Q8|RU2A_DROME Probable U2 small nuclear ribonucleoprotein A' OS=Drosophila melanogaster GN=U2A PE=2 SV=1

 Score =  184 bits (466), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 7/238 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LT +LI +S  + N  +ERELDLRG KI  IENLGAT DQFDTIDLSDN++ KL+N+
Sbjct: 1   MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNL 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           PHL RL  L++NNNRI RI+  + E +P L +++LT N L  L +++PL    KL+ + L
Sbjct: 61  PHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           L N ++ KPNYR Y+ +K   LR+LDF+    K+R  A   F +++ ++  K+ S K+ M
Sbjct: 121 LINPVSTKPNYREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTKQGKDVLKEISRKSKM 180

Query: 177 P---VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231
                        + + +       P+ +  I+ AI  + +L EV RL ++L+SGQLP
Sbjct: 181 SAAAAIAAEAGNGKGRGSEGGRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLP 238

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Drosophila melanogaster (taxid: 7227)

>sp|Q9USX8|RU2A_SCHPO U2 small nuclear ribonucleoprotein A' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lea1 PE=1 SV=1

 Score =  160 bits (406), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 8/238 (3%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           +RL A+ + + P F + +KE ELDLR  +I +IENLG   D  D ID +DN+I  L N P
Sbjct: 1   MRLNAEFLSQVPSFISPLKETELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFP 60

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
            + RL TL+  NNRIT I P+IG+ LP L TL L  N L  + ++DPL S P+L  LS +
Sbjct: 61  RMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCI 120

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKK----ERMEAASLFASEEMEEEAKKESM--KTL 175
           DN + +K  YRLY+I ++ SL +LDF++    ER+ A  +F   +   E     M  K+ 
Sbjct: 121 DNPVAQKQYYRLYLIWRIPSLHILDFERVRRNERLRAEEVFGQIQNPTEIASSIMGVKSR 180

Query: 176 MPVEVPNVSEEEEQQTPKVVAP--TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231
           +      V    E  +P       TPE+   IK AI N+ ++ E+ RLE +L  G++P
Sbjct: 181 VFDLAALVQSHPEANSPITTGYTLTPEEREKIKEAIKNASSIAEINRLEAMLLEGKIP 238

Involved in pre-mRNA splicing. This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4WV66|RU2A_ASPFU U2 small nuclear ribonucleoprotein A' OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=lea1 PE=3 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/256 (39%), Positives = 145/256 (56%), Gaps = 16/256 (6%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           +RLT +LI  S  + N +K+RELDLRG+KI  IENLG  +DQ D ID +DN+I  L N P
Sbjct: 1   MRLTVELIQNSLSYINPLKDRELDLRGHKIPTIENLGIAKDQ-DAIDFTDNDISSLGNFP 59

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
              RL TL++  NR+  I P I   +P L TLVLT N +  L ++DPL +L +L  L LL
Sbjct: 60  FFPRLHTLLLARNRVKHIQPTIASTIPNLTTLVLTANNMAELADLDPLRNLTRLTHLVLL 119

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKK----ERMEAASLFAS-EEMEEEAKKESMKTLM 176
           +N +T+K +YR +VI ++ S+R LD++K    ER +A  LF + EE    A K       
Sbjct: 120 ENPVTRKEHYRYWVIWRIPSVRFLDYQKVKDAERAKAKELFGTAEEPTALASKIMGIKSR 179

Query: 177 PVEVPNVSEEEEQQTPKV-VAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
             +VP+   E       V V  T ++   ++  I  +++L+E+ RLEK L  G++P    
Sbjct: 180 TFDVPSGGAERAPADKAVRVKLTEKERKRVEKMIREARSLQEITRLEKELNEGRIPG--- 236

Query: 236 IPDYDSGSKDVKENDE 251
                 G+ D  E+ E
Sbjct: 237 ------GALDAGEDSE 246

Involved in pre-mRNA splicing.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q4P5F9|RU2A_USTMA U2 small nuclear ribonucleoprotein A' OS=Ustilago maydis (strain 521 / FGSC 9021) GN=LEA1 PE=3 SV=1

 Score =  140 bits (354), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 145/243 (59%), Gaps = 15/243 (6%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           ++LT +L+ +S    N +++RELDLRG KI  IENLG T DQ D IDL+DN+I  L N P
Sbjct: 1   MKLTPELLSRSSSSINTLRDRELDLRGLKIPAIENLGVTRDQNDAIDLTDNDIRYLGNFP 60

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
            L +L TL + NN I+RI+P IG  LP LH+L LTNN + +L E+  L+   +L++L L+
Sbjct: 61  LLQQLKTLQLANNLISRIDPRIGHSLPALHSLNLTNNCISDLSELVHLSKCRRLEYLCLM 120

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEA-----KKESM 172
               +++  YR +VI KL  +RVLD++    KER  A  L  +E+    A      K+  
Sbjct: 121 GTPASREAQYREFVIWKLPQVRVLDYQRIKDKERARAKDLMETEDGRPTALAANILKKLG 180

Query: 173 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQII------AIKAAIVNSQTLEEVARLEKVLK 226
            + M V+V  +  +++   P  +  +  +++      AI+ AI +S++LEE+ +LE+ LK
Sbjct: 181 ASAMDVDVDVMVGKQKTFEPGRLNGSSRRLLTAEERKAIEDAIESSESLEEIRKLEEQLK 240

Query: 227 SGQ 229
            G 
Sbjct: 241 MGH 243

Involved in pre-mRNA splicing.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q7S9P4|RU2A_NEUCR U2 small nuclear ribonucleoprotein A' OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=lea-1 PE=3 SV=1

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/250 (35%), Positives = 130/250 (52%), Gaps = 11/250 (4%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           +RLTADLI  S  + N +KERE+DLRG++I  IENLG      D ID +DN+I  L N P
Sbjct: 1   MRLTADLINNSLSYLNPLKEREIDLRGHRIPAIENLGVAGPH-DAIDFTDNDIQVLGNFP 59

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
              R+ TL++  NRI +I   +    P L  LVL +N +  L +++ L   P+L  L L 
Sbjct: 60  LSPRIRTLLLARNRIAQIQSTLPNATPNLKNLVLASNNIGELADLEVLGRFPRLTHLVLT 119

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKK----ERMEAASLFASE----EMEEEAKKESMK 173
           DN +TKK NYR +V+     +R LD+ K    ER +A  LF +     E+ +  K    K
Sbjct: 120 DNPVTKKENYRYWVLWLCPQVRFLDYVKVKDAERQKAKELFGTADEPTELAKTIKGIKSK 179

Query: 174 TLMPVEVPNVSEEEEQQTPKV--VAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231
           T                + K+  +  T ++   ++  I  + +LEE+ RLEK L  G+LP
Sbjct: 180 TFDVGASSANGAAGSGPSSKLSRLKLTEKEKKKLQDLIKKADSLEEIIRLEKALNEGRLP 239

Query: 232 ADLKIPDYDS 241
             +   D D+
Sbjct: 240 PGIIAEDDDA 249

Involved in pre-mRNA splicing.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
224072439	284	predicted protein [Populus trichocarpa]	0.989	0.982	0.825	1e-126
255543298	287	U2 small nuclear ribonucleoprotein A, pu	1.0	0.982	0.808	1e-124
224057876	284	predicted protein [Populus trichocarpa]	0.989	0.982	0.815	1e-123
225425356	287	PREDICTED: U2 small nuclear ribonucleopr	1.0	0.982	0.770	1e-118
295687235	285	U2 small nuclear ribonucleoprotein A [Go	0.992	0.982	0.794	1e-118
358248152	287	uncharacterized protein LOC100803110 [Gl	1.0	0.982	0.759	1e-114
388511743	280	unknown [Lotus japonicus]	0.975	0.982	0.763	1e-113
363808322	276	uncharacterized protein LOC100779162 [Gl	0.960	0.981	0.756	1e-112
77416949	286	unknown [Solanum tuberosum]	0.996	0.982	0.742	1e-111
449445608	279	PREDICTED: U2 small nuclear ribonucleopr	0.971	0.982	0.756	1e-107

>gi|224072439|ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|222841164|gb|EEE78711.1| predicted protein [Populus trichocarpa]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/287 (82%), Positives = 255/287 (88%), Gaps = 8/287 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTLIINNNRITRINPNIGE+LPKLHTLVLTNNRLVNL EIDPL+SLPKLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKKPNYRLYVIHKLKSLRVLDFK    KER EA  LF+S+E+EEEAK+ES+KT  
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 177 PVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
           P E+PN+ E  EEQQ PKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK L SGQLPADLK
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
           I D D+GS  VKE D+KM  D +NEA  EPNN+E QK++E   MEQ+
Sbjct: 241 ILD-DTGSNSVKEQDDKMATDSQNEA--EPNNLEEQKDNEATPMEQE 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543298|ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis] gi|223548673|gb|EEF50164.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/287 (80%), Positives = 254/287 (88%), Gaps = 5/287 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+L RLGTL+INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL SLPKLQFLSL
Sbjct: 61  PYLTRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDNSITKKPNYRLY+IHKLKSLRVLDFK    KERMEA +LFAS+E+EEEA +ES KT +
Sbjct: 121 LDNSITKKPNYRLYIIHKLKSLRVLDFKKVKSKERMEAENLFASKEVEEEAIRESAKTFI 180

Query: 177 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
           P EVPNV+E+ EEQQ PKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK L SGQ+P DL 
Sbjct: 181 PGEVPNVTEDAEEQQNPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQIPTDLN 240

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
           I D DS    V+E D+KM  D +N+ D EP+N++ QK+ + A+MEQ+
Sbjct: 241 IFDNDSELNTVQEKDDKMATDGDNKTDHEPSNLDEQKDSDSASMEQE 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057876|ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|222846626|gb|EEE84173.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/287 (81%), Positives = 251/287 (87%), Gaps = 8/287 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADL+WKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLENM
Sbjct: 1   MVRLTADLVWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTLIINNNRITRINPNIGE+LPKLHTLVL NNRLVNL EIDPL SLPKL FLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLINNRLVNLAEIDPLASLPKLHFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKKPNYRLYVIHKLKSLRVLDFK    KER EA  LFAS+E+EEEA++ES+KT  
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKGKERAEAEHLFASKEVEEEARRESVKTFT 180

Query: 177 PVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
           P EVPNV E  EEQQ PKVVAPTP+QIIAIKAAIVNSQTLEEVARLEK L SGQLPADLK
Sbjct: 181 PGEVPNVLEGAEEQQAPKVVAPTPDQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
           I D  +GS  VKE D+KM  D +NEA  EPNN+E QK++E   MEQ+
Sbjct: 241 ILD-GTGSNSVKEQDDKMATDNQNEA--EPNNLEEQKDNEATPMEQE 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425356|ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotein A' [Vitis vinifera] gi|296085571|emb|CBI29303.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/287 (77%), Positives = 249/287 (86%), Gaps = 5/287 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAI+ERELDLRGNK+AVIENLGATEDQFDTIDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTL+INNNRITRINPNIGE+LPKLHTLVLTNNRLVNL EIDPL+S PKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKKPNYRLYVIH+LKSLR+LDFK    KER+EA +LFAS+E+EEEAK+E +KT  
Sbjct: 121 LDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFT 180

Query: 177 PVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
           P E+PN  E  EEQQ PKVV P+PE++IAIKAAIVNSQTLEEVARLEK LKSGQLPADLK
Sbjct: 181 PGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
               ++ +  V E D+KMV    N +  EP  VE QKND++A MEQ+
Sbjct: 241 SLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVEEQKNDDVAPMEQE 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295687235|gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium hirsutum]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/287 (79%), Positives = 255/287 (88%), Gaps = 7/287 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTADLIWK PHFFNA+KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL+N 
Sbjct: 1   MVKLTADLIWKCPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLDNF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+L RLGTL+INNNR+TRINPNIGEFLP LHTLVLTNNRLVNLVEIDPL+SLPKLQFLSL
Sbjct: 61  PYLKRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLSSLPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKKPNYRLYVIHKLKSLRVLDFK    KER+EA +LFAS+E EEE KKES KT+ 
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKAKERLEAENLFASKEAEEEIKKESTKTVA 180

Query: 177 PVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
           P EVPNVSE  EE+Q PKVVAPTPEQI+AIKAAIVNSQTLEEVARLEK L++GQLPADLK
Sbjct: 181 PKEVPNVSEVAEEEQMPKVVAPTPEQILAIKAAIVNSQTLEEVARLEKALQTGQLPADLK 240

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
           IP  D+ +   K  DEK V D++NE++VEP+N++  KN+E A MEQ+
Sbjct: 241 IPGDDTNA--AKGGDEKKVSDIQNESNVEPDNMDEDKNEEPAPMEQE 285

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248152|ref|NP_001239826.1| uncharacterized protein LOC100803110 [Glycine max] gi|255635750|gb|ACU18224.1| unknown [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/287 (75%), Positives = 242/287 (84%), Gaps = 5/287 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFN IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNTIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENV 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGT++INNNRITRINPNIGEFLP LHTLVLTNNR+VNLVEIDPL SLPKL FLSL
Sbjct: 61  PYLNRLGTMLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLHFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKKPNYRLYVI+ LKSLRVLDFK    KER+EA +LFAS+E+ EE ++   KT  
Sbjct: 121 LDNNITKKPNYRLYVINNLKSLRVLDFKKVKNKERLEAKNLFASKEVIEEIQRTPAKTFS 180

Query: 177 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
             E PNVSE  EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK LKSGQLPADL 
Sbjct: 181 TGETPNVSEAIEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLI 240

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
               +    +V E  E M+ D  ++AD + N+ + Q+N + A+MEQD
Sbjct: 241 SLSDNIMLDNVDEKHEDMIHDDRSQADGKSNDTQEQRNTDSASMEQD 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511743|gb|AFK43933.1| unknown [Lotus japonicus]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/287 (76%), Positives = 238/287 (82%), Gaps = 12/287 (4%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDT+DLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENI 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+ NRLGTL+INNNR+TRINPNIGEFLP LHTLVLTNNR+VNLVEIDPL SLPKLQFLSL
Sbjct: 61  PYRNRLGTLLINNNRVTRINPNIGEFLPSLHTLVLTNNRIVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKKPNYRLYVI KL SLRVLDFK    KER+EA +LF SEE  E A+K  +KT+ 
Sbjct: 121 LDNNITKKPNYRLYVISKLDSLRVLDFKKVKNKERLEAKNLFGSEEAIENAQKTPVKTIS 180

Query: 177 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
           P E P+VSE  EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK LKSG LP DLK
Sbjct: 181 PAETPDVSEATEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDLK 240

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
             + +    +V E  E +V D       E N+   QKN + AAMEQD
Sbjct: 241 SLNGNVTLDNVNEKGEDVVHD-------ESNDTREQKNTDSAAMEQD 280

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808322|ref|NP_001242503.1| uncharacterized protein LOC100779162 [Glycine max] gi|255647036|gb|ACU23986.1| unknown [Glycine max]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/287 (75%), Positives = 241/287 (83%), Gaps = 16/287 (5%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENV 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGT++INNNRITRINPNIGEFLP LHTLVLTNNR+VNLVEIDPL SLPKL FLSL
Sbjct: 61  PYLNRLGTMLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLHFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKKPNYRLYVI+KLKSLRVLDFK    KER+EA +LF+S+E+ EE ++   K+  
Sbjct: 121 LDNNITKKPNYRLYVINKLKSLRVLDFKKVKNKERLEAKNLFSSKEVIEEIQRTPTKS-- 178

Query: 177 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
             E PNVSE  EEQQ PKVVAPTPEQIIAIKAAIVN QTLEEVARLEK LKSGQLPADL 
Sbjct: 179 --ETPNVSEVIEEQQMPKVVAPTPEQIIAIKAAIVNFQTLEEVARLEKALKSGQLPADLL 236

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
           + + D       E  E M+ D   +AD E N+ + Q+N + A+MEQD
Sbjct: 237 LDNVD-------EKHEDMIHDDRGQADGESNDTQEQRNTDSASMEQD 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77416949|gb|ABA81870.1| unknown [Solanum tuberosum]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/287 (74%), Positives = 244/287 (85%), Gaps = 6/287 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAI+ERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct: 1   MVRLTADLIWKSPHFFNAIRERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTL++NNNRITRINPNIGEFLPKLHTL++T+NRL NLVEIDPL SLPKL+FLSL
Sbjct: 61  PYLNRLGTLLMNNNRITRINPNIGEFLPKLHTLIITSNRLTNLVEIDPLASLPKLKFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           L+N+ITK+PNYRLYVIHKLKSLR+LDF+    KER+EA+ LFAS+E EE+ KKES+KT +
Sbjct: 121 LENNITKRPNYRLYVIHKLKSLRLLDFRKVKQKERLEASKLFASQEAEEQVKKESVKT-V 179

Query: 177 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
           PVEV   +EE +E Q  K VAPTPEQIIAIKAAIVNSQTLEEVARLE+ LKSGQLPADL 
Sbjct: 180 PVEVAVPAEEPKEAQASKPVAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 239

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
           I D+D  +K     ++KMV D +++A+    NV  QK D    MEQ+
Sbjct: 240 IGDHDVTAKKEDAKEDKMVTDSDDKANKAEENVPEQKPDGPTDMEQE 286

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445608|ref|XP_004140564.1| PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Cucumis sativus]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/287 (75%), Positives = 241/287 (83%), Gaps = 13/287 (4%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTL+INNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPL SL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMKTLM 176
           LDN+ITKKPNYRLYVIHKLKS+RVLDFK    KER+EA +LF+S+E+EEEAKKES+KT +
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 177 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235
           P EV   S+  EE+QTP V APTPEQIIAIKAAIVNSQTLEEVARLE+ LKSGQLPADL 
Sbjct: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 236 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 282
           + + ++     K+ D+K + D  +E        E+  NDE   MEQ+
Sbjct: 241 LLEDNTAQNITKDKDDKTMSDSGDE--------EHVTNDESTPMEQE 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2024316	249	U2A' "U2 small nuclear ribonuc	0.843	0.955	0.584	9.7e-64
ZFIN|ZDB-GENE-041114-82	277	snrpa1 "small nuclear ribonucl	0.528	0.537	0.436	4e-37
UNIPROTKB|F1NAC8	255	SNRPA1 "Uncharacterized protei	0.528	0.584	0.449	6.4e-37
UNIPROTKB|A6H788	255	SNRPA1 "Uncharacterized protei	0.528	0.584	0.449	2.7e-36
UNIPROTKB|E2QWU2	255	SNRPA1 "Uncharacterized protei	0.528	0.584	0.449	3.5e-36
UNIPROTKB|P09661	255	SNRPA1 "U2 small nuclear ribon	0.528	0.584	0.449	3.5e-36
UNIPROTKB|F1RWS8	255	SNRPA1 "Uncharacterized protei	0.528	0.584	0.449	3.5e-36
MGI|MGI:1916231	255	Snrpa1 "small nuclear ribonucl	0.528	0.584	0.449	3.1e-35
RGD|2320415	255	LOC100364748 "U2 small nuclear	0.528	0.584	0.449	6.3e-35
RGD|2320494	255	Snrpa1 "small nuclear ribonucl	0.528	0.584	0.449	6.3e-35

TAIR|locus:2024316 U2A' "U2 small nuclear ribonucleoprotein A" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 139/238 (58%), Positives = 152/238 (63%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct:     1 MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P+                      EFLPK               EIDPL S+PKLQ+LSL
Sbjct:    61 PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKERXXXXXXXXXXXXXXXXXXXXXXTLMXXXX 180
             LDN+ITKK NYRLYVIHKLKSLRVLDF K +                             
Sbjct:   121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSREEVK 180

Query:   181 XXXXXXXXQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPD 238
                      +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ LK GQ+PA L IPD
Sbjct:   181 KVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLIIPD 238

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA;IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

ZFIN|ZDB-GENE-041114-82 snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Danio rerio (taxid:7955)]

 Score = 301 (111.0 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 65/149 (43%), Positives = 87/149 (58%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + N +++RELDLRG KI V+ENLGAT DQFDTIDLSDNE+ KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTIDLSDNEVRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL ++  L  LSL
Sbjct:    61 PLLKRLKTLLVNNNRICRIGENLEQALPDLKELILTSNNIQELGDLDPLATVKSLSLLSL 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVINKIPQIRVLDFQK 149

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NAC8 SNRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 309 (113.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 67/149 (44%), Positives = 88/149 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                E+DPL+S+  L +LS+
Sbjct:    61 PLLRRLKTLLMNNNRICRIGEGLEQALPSLTELVLTNNNISELGELDPLSSIKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|A6H788 SNRPA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 67/149 (44%), Positives = 87/149 (58%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|E2QWU2 SNRPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 304 (112.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 67/149 (44%), Positives = 87/149 (58%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|P09661 SNRPA1 "U2 small nuclear ribonucleoprotein A'" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 67/149 (44%), Positives = 87/149 (58%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

GO:0003723 "RNA binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0005686 "U2 snRNP" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|F1RWS8 SNRPA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 304 (112.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 67/149 (44%), Positives = 87/149 (58%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

MGI|MGI:1916231 Snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Mus musculus (taxid:10090)]

 Score = 304 (112.1 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 67/149 (44%), Positives = 87/149 (58%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|2320415 LOC100364748 "U2 small nuclear ribonucleoprotein polypeptide A-like" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 67/149 (44%), Positives = 87/149 (58%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

RGD|2320494 Snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 67/149 (44%), Positives = 87/149 (58%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
             L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P43333	RU2A_ARATH	No assigned EC number	0.8024	0.8262	0.9357	yes	no
Q9V4Q8	RU2A_DROME	No assigned EC number	0.4285	0.8191	0.8716	yes	no
Q4WV66	RU2A_ASPFU	No assigned EC number	0.3906	0.8510	0.9486	yes	no
Q9BLB6	RU2A_CAEEL	No assigned EC number	0.4388	0.8049	0.8972	yes	no
Q9USX8	RU2A_SCHPO	No assigned EC number	0.3991	0.8156	0.9623	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_III0531	hypothetical protein (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00440042	hypothetical protein (2357 aa)				•	•	•	•		0.456
	estExt_fgenesh4_pm.C_LG_XIX0309	hypothetical protein (234 aa)					•	•	•		0.442

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
smart00446	19	smart00446, LRRcap, occurring C-terminal to leucin	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLD 122
            L +L ++NNR+T I     + LP L  L L+ N   NL  I P   + LP L+ L L  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN---NLTSISPEAFSGLPSLRSLDLSG 57

Query: 123 NSI 125
           N++
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 46  TIDLSDNEIVKLENMP--HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100
           ++DLS+N +  + +     L  L  L ++ N +T I+P     LP L +L L+ N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINN 73
                  +ELDL  NKI  + +          +DLS N++  L   + +L+ L  L ++ 
Sbjct: 136 GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N+I+ + P   E L  L  L L+NN ++ L  +  L++L  L  L L +N +   P    
Sbjct: 196 NKISDL-PPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNKLEDLPE--- 249

Query: 134 YVIHKLKSLRVLDFKKERMEAASLFAS 160
             I  L +L  LD    ++ + S   S
Sbjct: 250 -SIGNLSNLETLDLSNNQISSISSLGS 275

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 12/152 (7%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGA-----TEDQFDTIDLSDNEIV 55
           + RL  +L   +     +   R L L     + I +L             ++DL+ N + 
Sbjct: 47  VNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR 106

Query: 56  KLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPK 114
              + +  L  L +L ++NN IT I P IG     L  L L++N++ +L    PL +LP 
Sbjct: 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPN 164

Query: 115 LQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L+ L L  N ++  P     ++  L +L  LD
Sbjct: 165 LKNLDLSFNDLSDLPK----LLSNLSNLNNLD 192

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 7   DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK-LENMPHLNR 65
           DL        N      LDL GNKI+ +          + +DLS+N I++ L ++ +L  
Sbjct: 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN 233

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           L  L ++NN++  +  +IG  L  L TL L+NN++ +   I  L SL  L+ L L  NS+
Sbjct: 234 LSGLELSNNKLEDLPESIGN-LSNLETLDLSNNQISS---ISSLGSLTNLRELDLSGNSL 289

Query: 126 TKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFA 159
           +        ++  L+ L  L    + +E      
Sbjct: 290 SNALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 89  KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
            L +L L+NNRL  +        LP L+ L L  N++T            L SLR LD 
Sbjct: 1   NLKSLDLSNNRLTVI-PDGAFKGLPNLKVLDLSGNNLTSISP---EAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|197729 smart00446, LRRcap, occurring C-terminal to leucine-rich repeats

 Score = 34.2 bits (80), Expect = 0.003
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 128 KPNYRLYVIHKLKSLRVLD 146
             +YR  VI  L  LR LD
Sbjct: 1   LAHYREKVIELLPQLRKLD 19

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins. Length = 19

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.0 bits (79), Expect = 0.004
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 88  PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
             L TL L+NN    + ++ PL++LP L+ L L  N IT 
Sbjct: 1   TNLETLDLSNN---QITDLPPLSNLPNLETLDLSGNKITD 37

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.49
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.35
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.3
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.16
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
PLN03150	623	hypothetical protein; Provisional	98.94
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.83
PLN03150	623	hypothetical protein; Provisional	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.46
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	98.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.21
PRK15386	426	type III secretion protein GogB; Provisional	98.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.84
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.21
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.98
smart00370	26	LRR Leucine-rich repeats, outliers.	95.73
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.73
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.58
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.19
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.31
smart00370	26	LRR Leucine-rich repeats, outliers.	94.31
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	93.79
KOG4308	478	consensus LRR-containing protein [Function unknown	93.26
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	91.03
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.63
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.21
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.86

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.89  E-value=1.1e-23  Score=169.21  Aligned_cols=165  Identities=51%  Similarity=0.778  Sum_probs=71.0

Q ss_pred             CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      |||||.+.|...+.+.++.++++|+|++|.|+.|...-..+.+|+.|+|++|.|+.++++..++.|+.|++++|+|+.+.
T Consensus         1 ~~~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    1 MVRLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred             CccccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence            89999999999999999999999999999999987554468999999999999999999999999999999999999997


Q ss_pred             CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc----cHHHHHH
Q 023443           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK----ERMEAAS  156 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~----~~~~~~~  156 (282)
                      +.+...+++|+.|++++|+|..+..+..+..+++|+.|++.+|+++..+.++.+.+..+|+|+.||...    .+..+..
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~  160 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEK  160 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B------
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccccc
Confidence            655456899999999999999988777888999999999999999999999999999999999999877    6777777


Q ss_pred             hccChhHHH
Q 023443          157 LFASEEMEE  165 (282)
Q Consensus       157 ~~~~~~~~~  165 (282)
                      +|.+.....
T Consensus       161 ~f~~~~~~~  169 (175)
T PF14580_consen  161 LFKGKRAAQ  169 (175)
T ss_dssp             ---------
T ss_pred             ccccccccc
Confidence            777665433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=8.3e-25  Score=199.55  Aligned_cols=238  Identities=17%  Similarity=0.145  Sum_probs=158.5

Q ss_pred             CCCCCCCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443           12 SPHFFNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~   88 (282)
                      -..++.++.|+.+.+.+|++.  .||..++.+..|++||||+|++++.| .+....++.+|+||+|+|..||...|.+++
T Consensus        71 hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt  150 (1255)
T KOG0444|consen   71 HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT  150 (1255)
T ss_pred             hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence            445677778888888888877  68877777888888888888888887 677778888888888888888888888888


Q ss_pred             cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHh
Q 023443           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAK  168 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~  168 (282)
                      -|-+||||+|++..+||  .+..+..|+.|.|++|++...--.   .+-.+++|++|.+++.......+-........+.
T Consensus       151 DLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hfQLr---QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~  225 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLNHFQLR---QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR  225 (1255)
T ss_pred             hHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhhHHHHh---cCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence            88888888888888887  777888888888888865411000   1112334444444441111111111111111111


Q ss_pred             hh----ccccccCCCC----------------CCCcch-hhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhC
Q 023443          169 KE----SMKTLMPVEV----------------PNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKS  227 (282)
Q Consensus       169 ~~----~~~~~~p~~~----------------~~~~~~-~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~  227 (282)
                      .+    +....+|..+                ..+... +.-.+|+.|+||.|+++.+|.++++++.|+.|.+.+|++.-
T Consensus       226 dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  226 DVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             hccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc
Confidence            11    1111122211                111111 24567888889999999999999999999999999999877


Q ss_pred             CCCCCCCCCCCCCCCCCcccccCCCCC
Q 023443          228 GQLPADLKIPDYDSGSKDVKENDEKMV  254 (282)
Q Consensus       228 g~iP~~l~~~~~~~~~~~~~~~~~~~~  254 (282)
                      ..||++||+.....-+-.+.++.|-.|
T Consensus       306 eGiPSGIGKL~~Levf~aanN~LElVP  332 (1255)
T KOG0444|consen  306 EGIPSGIGKLIQLEVFHAANNKLELVP  332 (1255)
T ss_pred             cCCccchhhhhhhHHHHhhccccccCc
Confidence            789999999887776666666655443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=3.9e-24  Score=195.18  Aligned_cols=236  Identities=19%  Similarity=0.239  Sum_probs=183.4

Q ss_pred             CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~   89 (282)
                      |+.++.+..|++||||+|+++++|..+...+++-+|+||+|+|..||  -|.+++.|-+|+||+|++..+||.+- .+..
T Consensus        96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R-RL~~  174 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR-RLSM  174 (1255)
T ss_pred             CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHH-HHhh
Confidence            67788899999999999999999988888889999999999999998  46788999999999999999988874 7888


Q ss_pred             ccEEeccCCcCC-----CCCCC-------------------CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEe
Q 023443           90 LHTLVLTNNRLV-----NLVEI-------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL  145 (282)
Q Consensus        90 L~~L~L~~N~l~-----~~~~~-------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L  145 (282)
                      |++|.|++|.+.     .+|.+                   .++..+.+|..+++|.|.+..+|.    .+.++++|+.|
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe----cly~l~~LrrL  250 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE----CLYKLRNLRRL  250 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH----HHhhhhhhhee
Confidence            888888888542     22221                   145556677777888888887777    67777777777


Q ss_pred             cCcccHHHH-------------------------HHhccChhHHHHHhhhccccc--cCCCCCCCcchhhcCCCeeeCCC
Q 023443          146 DFKKERMEA-------------------------ASLFASEEMEEEAKKESMKTL--MPVEVPNVSEEEEQQTPKVVAPT  198 (282)
Q Consensus       146 ~ls~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~l~~L~~L~Ls  198 (282)
                      +||+|.+..                         ..++...+...+....+..++  +|..|+      .+.+|+++..+
T Consensus       251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG------KL~~Levf~aa  324 (1255)
T KOG0444|consen  251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG------KLIQLEVFHAA  324 (1255)
T ss_pred             ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchh------hhhhhHHHHhh
Confidence            777744321                         111111112222222233343  677777      89999999999


Q ss_pred             hhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccc
Q 023443          199 PEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENE  260 (282)
Q Consensus       199 ~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (282)
                      +|.+.-+|..+++|..|+.|.+..|++  -.+|..|........+|.-++..-.||+.-.+.
T Consensus       325 nN~LElVPEglcRC~kL~kL~L~~NrL--iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da  384 (1255)
T KOG0444|consen  325 NNKLELVPEGLCRCVKLQKLKLDHNRL--ITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA  384 (1255)
T ss_pred             ccccccCchhhhhhHHHHHhcccccce--eechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence            999999999999999999999999999  889999999999999999999999999876654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=3e-22  Score=181.57  Aligned_cols=237  Identities=18%  Similarity=0.223  Sum_probs=184.1

Q ss_pred             cccCHHHHhcCC--CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCc
Q 023443            2 VRLTADLIWKSP--HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT   77 (282)
Q Consensus         2 ~~l~~~~i~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~   77 (282)
                      +.++.+.+.+..  .|.++++|+.+++.+|.++.||.......+|+.|+|.+|.|+.+.  .+..++.|+.|||+.|.|+
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is  162 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS  162 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence            456666666543  468999999999999999999988777888999999999999985  7888999999999999999


Q ss_pred             ccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--H
Q 023443           78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--A  155 (282)
Q Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~  155 (282)
                      .++...|..-.++++|+|++|+|+.+.. +.|.++.+|..|.|+.|+++.+|..   .|.++++|+.|+|..|++..  .
T Consensus       163 ~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  163 EIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             cccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCHH---Hhhhcchhhhhhccccceeeehh
Confidence            9998888777899999999999999987 7999999999999999999999997   67889999999999976543  3


Q ss_pred             HhccChhHHHHHhhh-cccccc-CCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhhhCCCCCC
Q 023443          156 SLFASEEMEEEAKKE-SMKTLM-PVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPA  232 (282)
Q Consensus       156 ~~~~~~~~~~~~~~~-~~~~~~-p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l~~g~iP~  232 (282)
                      ..|.+....+.+..- +....+ .+.|.      .+.++++|+|..|+++.+. .++..+++|+.|++++|.+  ..|..
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy------~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI--~rih~  310 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFY------GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI--QRIHI  310 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCccee------eecccceeecccchhhhhhcccccccchhhhhccchhhh--heeec
Confidence            557776666554433 323333 34444      6778888888888888766 5678888888888888888  44332


Q ss_pred             CC-CCCCCCCCCCcccccC
Q 023443          233 DL-KIPDYDSGSKDVKEND  250 (282)
Q Consensus       233 ~l-~~~~~~~~~~~~~~~~  250 (282)
                      .- ..-.+..-++...+..
T Consensus       311 d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             chhhhcccceeEecccccc
Confidence            22 2233444455555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=99.84  E-value=1.7e-20  Score=150.03  Aligned_cols=227  Identities=55%  Similarity=0.849  Sum_probs=189.8

Q ss_pred             CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      |||++++.+.+.++|.+...=+.++|.+.++..+...-.-+.+...+||++|.+..++.|..++.|.+|.|++|+|+.|.
T Consensus         1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~   80 (233)
T KOG1644|consen    1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID   80 (233)
T ss_pred             CccccHHHHhhchhhhhhccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeec
Confidence            89999999999999999999999999999998777644456788999999999999999999999999999999999999


Q ss_pred             CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc----cHHHHHH
Q 023443           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK----ERMEAAS  156 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~----~~~~~~~  156 (282)
                      |.+..-+++|..|.|.+|.|..+..++.+..|++|++|.+-+|+++.-..++.+.+..+++|++||.++    .|..+..
T Consensus        81 p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~  160 (233)
T KOG1644|consen   81 PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEV  160 (233)
T ss_pred             cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHH
Confidence            998878899999999999999988888899999999999999999999999988999999999999999    6778888


Q ss_pred             hccChhHHHHHhhhc-cccccCCCCCCCcchhhcCCCe-eeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCC
Q 023443          157 LFASEEMEEEAKKES-MKTLMPVEVPNVSEEEEQQTPK-VVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA  232 (282)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~l~~L~-~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~  232 (282)
                      +|....+......++ ...+-|+...     ..++.-. ...=+..+...|-.+|.+.++|.+++...-.+++|.||.
T Consensus       161 ~f~~k~~k~~~~~i~~s~~~~~~~~~-----~~~p~~~~~~~~t~e~~~~iK~ai~~a~sl~Ei~RL~~~l~~G~~p~  233 (233)
T KOG1644|consen  161 FFKGKKGKKAAKSINRSKASDPGSHY-----AELPNANSVVTPTPEDREKIKEAIKNASSLAEINRLEQLLQSGQIPK  233 (233)
T ss_pred             HhccccchhhhhhhhhhhccCchhcc-----ccCCcccCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCC
Confidence            886666665555553 3333333211     0111100 011155677789999999999999999999999999994

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=1.5e-21  Score=196.81  Aligned_cols=227  Identities=19%  Similarity=0.209  Sum_probs=145.1

Q ss_pred             CCCCCCCCceeEEEecCCccc-ccccc-ccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443           12 SPHFFNAIKERELDLRGNKIA-VIENL-GATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~-~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~   89 (282)
                      ++.|..+++|+.|+|++|++. .+|.. +..+++|++|+|++|.+++....+.+++|++|+|++|.+++..+..+.++++
T Consensus        86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence            345667778888888888776 67743 4477788888888887765422345677778888877777655554567778


Q ss_pred             ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHH
Q 023443           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEE  166 (282)
Q Consensus        90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~  166 (282)
                      |++|++++|.+.+..+ ..++++++|++|++++|.+. .+|.    .++++++|++|++++|.....  ..+........
T Consensus       166 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  240 (968)
T PLN00113        166 LKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH  240 (968)
T ss_pred             CCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence            8888888887765443 36777778888888877776 4455    577777888887777553211  11111111110


Q ss_pred             Hhhh--ccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCC
Q 023443          167 AKKE--SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGS  243 (282)
Q Consensus       167 ~~~~--~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~  243 (282)
                      +...  .....+|..+.      .+++|+.|++++|+++ .+|..+.++++|++|++++|.+ .+.+|..+........+
T Consensus       241 L~L~~n~l~~~~p~~l~------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L  313 (968)
T PLN00113        241 LDLVYNNLTGPIPSSLG------NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEIL  313 (968)
T ss_pred             EECcCceeccccChhHh------CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEE
Confidence            0000  11123444444      6777788888888776 6777777778888888887777 56777777666655555


Q ss_pred             CcccccC
Q 023443          244 KDVKEND  250 (282)
Q Consensus       244 ~~~~~~~  250 (282)
                      +...+..
T Consensus       314 ~l~~n~~  320 (968)
T PLN00113        314 HLFSNNF  320 (968)
T ss_pred             ECCCCcc
Confidence            5554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.5e-22  Score=183.45  Aligned_cols=221  Identities=23%  Similarity=0.257  Sum_probs=139.6

Q ss_pred             cccCHHHHhcCCCCCCCCc-eeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCc
Q 023443            2 VRLTADLIWKSPHFFNAIK-ERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT   77 (282)
Q Consensus         2 ~~l~~~~i~~~~~~~~l~~-L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~   77 (282)
                      |.+..+.+...|.|+.... |+.|+|.+|.|+++. ..+..++.|+.||||.|.|+.+|  .|..-.++++|+|++|.|+
T Consensus       107 v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It  186 (873)
T KOG4194|consen  107 VNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT  186 (873)
T ss_pred             eeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc
Confidence            4556667777777776654 777777777777666 55666677777777777777664  5666566677777777776


Q ss_pred             ccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC------------------------ccCCchH
Q 023443           78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT------------------------KKPNYRL  133 (282)
Q Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~ip~~~~  133 (282)
                      .+..+.|.++.+|..|.|++|+|+.+|. ..|.++++|+.|+|..|+|.                        .+.++  
T Consensus       187 ~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG--  263 (873)
T KOG4194|consen  187 TLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG--  263 (873)
T ss_pred             ccccccccccchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc--
Confidence            6666666666666666666666666665 45555666666666555554                        44443  


Q ss_pred             HHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-ccccc-cCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HH
Q 023443          134 YVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-SMKTL-MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AA  208 (282)
Q Consensus       134 ~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-~~~~~-~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~  208 (282)
                       +|..+.++++|+|+.|++...  .|..+....+.+... +.+.. -+...      ...++|++|+|++|+|+.++ .+
T Consensus       264 -~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W------sftqkL~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  264 -AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW------SFTQKLKELDLSSNRITRLDEGS  336 (873)
T ss_pred             -ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh------hhcccceeEeccccccccCChhH
Confidence             345566667777777665432  232233333322221 22222 22222      25678889999999998777 46


Q ss_pred             hhcccChHHHHHHHHhhhCCCCCCCC
Q 023443          209 IVNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       209 l~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                      +.-+..|++|++++|.+  ..|-...
T Consensus       337 f~~L~~Le~LnLs~Nsi--~~l~e~a  360 (873)
T KOG4194|consen  337 FRVLSQLEELNLSHNSI--DHLAEGA  360 (873)
T ss_pred             HHHHHHhhhhcccccch--HHHHhhH
Confidence            78888899999999888  5554433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.83  E-value=4.7e-24  Score=185.79  Aligned_cols=212  Identities=20%  Similarity=0.243  Sum_probs=147.4

Q ss_pred             CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L   90 (282)
                      |++++.+..++.++.++|++..+|..++.+.++..|+.++|.+..++ +++.+..|..++..+|+++.+|++++ .+.+|
T Consensus        84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~-~~~~l  162 (565)
T KOG0472|consen   84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMV-NLSKL  162 (565)
T ss_pred             CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHH-HHHHH
Confidence            44444444455555555555555554555555555555555555553 55555556666666666666666554 56666


Q ss_pred             cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHH-hh
Q 023443           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEA-KK  169 (282)
Q Consensus        91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~-~~  169 (282)
                      ..+++.+|+++.+|+  ..-.++.|++++...|-+..+|+    .++.+.+|..|++..|++..-.-|.+......+ ..
T Consensus       163 ~~l~~~~n~l~~l~~--~~i~m~~L~~ld~~~N~L~tlP~----~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g  236 (565)
T KOG0472|consen  163 SKLDLEGNKLKALPE--NHIAMKRLKHLDCNSNLLETLPP----ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG  236 (565)
T ss_pred             HHhhccccchhhCCH--HHHHHHHHHhcccchhhhhcCCh----hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc
Confidence            666666666666666  33347777788888888888887    678888888888888776555556555444333 23


Q ss_pred             hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCC
Q 023443          170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIP  237 (282)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~  237 (282)
                      .+.+..+|.++.     ..+.++.+|||..|+++++|..++.+.+|+.||+++|.+  ..+|.++|..
T Consensus       237 ~N~i~~lpae~~-----~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i--s~Lp~sLgnl  297 (565)
T KOG0472|consen  237 ENQIEMLPAEHL-----KHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI--SSLPYSLGNL  297 (565)
T ss_pred             ccHHHhhHHHHh-----cccccceeeeccccccccCchHHHHhhhhhhhcccCCcc--ccCCcccccc
Confidence            366777887776     578899999999999999999999999999999999999  8999999977

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=2.7e-21  Score=194.96  Aligned_cols=217  Identities=19%  Similarity=0.228  Sum_probs=104.5

Q ss_pred             CCceeEEEecCCccc-cccccccCCCCCcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443           18 AIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~   94 (282)
                      +++|++|+|++|.+. .+|..++.+++|++|++++|.+.+ +| .++++++|++|++++|.+.+..|..+..+++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            333444444444443 334444444455555555554432 23 344445555555555544443333333445555555


Q ss_pred             ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-
Q 023443           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-  170 (282)
Q Consensus        95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-  170 (282)
                      +++|.+++..+ ..++++++|++|++++|.++ .+|.    .++.+++|++|++++|+....  ..+....   .+..+ 
T Consensus       219 L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~  290 (968)
T PLN00113        219 LGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ---KLISLD  290 (968)
T ss_pred             CcCCccCCcCC-hhHhcCCCCCEEECcCceeccccCh----hHhCCCCCCEEECcCCeeeccCchhHhhcc---CcCEEE
Confidence            55555443222 24445555555555555544 2333    345555555555555432110  0000000   00000 


Q ss_pred             ---c-cccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCc
Q 023443          171 ---S-MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKD  245 (282)
Q Consensus       171 ---~-~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~  245 (282)
                         + ....+|..+.      .+++|+.|++++|.++ .+|..+..+++|+.|++.+|.+ .+.+|..++.......++.
T Consensus       291 Ls~n~l~~~~p~~~~------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~~~~L~~L~L  363 (968)
T PLN00113        291 LSDNSLSGEIPELVI------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF-SGEIPKNLGKHNNLTVLDL  363 (968)
T ss_pred             CcCCeeccCCChhHc------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC-cCcCChHHhCCCCCcEEEC
Confidence               0 0112233233      5667777777777776 5666777777777777777777 5667776666655555555


Q ss_pred             cccc
Q 023443          246 VKEN  249 (282)
Q Consensus       246 ~~~~  249 (282)
                      ..++
T Consensus       364 s~n~  367 (968)
T PLN00113        364 STNN  367 (968)
T ss_pred             CCCe
Confidence            5554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.81  E-value=6.7e-22  Score=154.73  Aligned_cols=163  Identities=25%  Similarity=0.368  Sum_probs=114.8

Q ss_pred             CCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEE
Q 023443           41 EDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS  119 (282)
Q Consensus        41 l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~  119 (282)
                      +++++.|-||+|+++.+| .+..+.+|+.|++++|+|+.+|..+ +.++.|+.|+++-|++..+|.  .|+.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lpr--gfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPR--GFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCcc--ccCCCchhhhhh
Confidence            566666666666666664 6666666777777777777766665 366677777777777666665  677777777777


Q ss_pred             eeCCcCC--ccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCC
Q 023443          120 LLDNSIT--KKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAP  197 (282)
Q Consensus       120 L~~N~l~--~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~L  197 (282)
                      |.+|.+.  .+|.    .|..++.|+.|.++.|.                     ...+|.+++      .+++|+.|.+
T Consensus       109 ltynnl~e~~lpg----nff~m~tlralyl~dnd---------------------fe~lp~dvg------~lt~lqil~l  157 (264)
T KOG0617|consen  109 LTYNNLNENSLPG----NFFYMTTLRALYLGDND---------------------FEILPPDVG------KLTNLQILSL  157 (264)
T ss_pred             ccccccccccCCc----chhHHHHHHHHHhcCCC---------------------cccCChhhh------hhcceeEEee
Confidence            7777665  4565    34555666666666644                     344677776      7888888888


Q ss_pred             ChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC
Q 023443          198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY  239 (282)
Q Consensus       198 s~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~  239 (282)
                      ..|.+-++|..++.++.|++|.+.+|++  ..+|++++....
T Consensus       158 rdndll~lpkeig~lt~lrelhiqgnrl--~vlppel~~l~l  197 (264)
T KOG0617|consen  158 RDNDLLSLPKEIGDLTRLRELHIQGNRL--TVLPPELANLDL  197 (264)
T ss_pred             ccCchhhCcHHHHHHHHHHHHhccccee--eecChhhhhhhh
Confidence            8888888888888888888888888888  888888876543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.78  E-value=2.1e-21  Score=151.99  Aligned_cols=182  Identities=23%  Similarity=0.305  Sum_probs=158.2

Q ss_pred             hcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443           10 WKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (282)
Q Consensus        10 ~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~   88 (282)
                      .+.+.++++.+++.|-||+|+++.+|+.+..+.+|++|++++|+|..+| .++.+++|+.|+++-|++..+|.++ +.++
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p  102 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFP  102 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCc
Confidence            4456778889999999999999999999999999999999999999998 8999999999999999999998886 4899


Q ss_pred             cccEEeccCCcCCC--CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443           89 KLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE  166 (282)
Q Consensus        89 ~L~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~  166 (282)
                      .|+.|||.+|.+..  +|.  .|..++.|+.|+|++|.|.-+|.    .++++++|+.|.++.|..              
T Consensus       103 ~levldltynnl~e~~lpg--nff~m~tlralyl~dndfe~lp~----dvg~lt~lqil~lrdndl--------------  162 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPG--NFFYMTTLRALYLGDNDFEILPP----DVGKLTNLQILSLRDNDL--------------  162 (264)
T ss_pred             hhhhhhccccccccccCCc--chhHHHHHHHHHhcCCCcccCCh----hhhhhcceeEEeeccCch--------------
Confidence            99999999999875  554  78889999999999999999999    799999999999998763              


Q ss_pred             HhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccC---hHHHHHHHHhh
Q 023443          167 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQT---LEEVARLEKVL  225 (282)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~---L~~L~l~~N~l  225 (282)
                             -.+|.+++      .+.+|+.|.+.+|+++.+|+.++++.-   =+++.+.+|..
T Consensus       163 -------l~lpkeig------~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  163 -------LSLPKEIG------DLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPW  211 (264)
T ss_pred             -------hhCcHHHH------HHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCC
Confidence                   23566776      888999999999999999999877643   34455566654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=1.8e-21  Score=169.75  Aligned_cols=225  Identities=20%  Similarity=0.218  Sum_probs=167.7

Q ss_pred             CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L   90 (282)
                      .+.+.++..|++|++++|++..+|+.++.+..++.++.++|+++.+| .++.+.+|..++.++|.+..++++++ .+..|
T Consensus        61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~-~~~~l  139 (565)
T KOG0472|consen   61 REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG-RLLDL  139 (565)
T ss_pred             cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH-HHhhh
Confidence            34566777788888888888888877777888888888888888877 67777888888888888888877775 67778


Q ss_pred             cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH-HHhccChhHHHHHhh
Q 023443           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA-ASLFASEEMEEEAKK  169 (282)
Q Consensus        91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~-~~~~~~~~~~~~~~~  169 (282)
                      ..++..+|+++.+|+  .++.+.+|..+++.+|.++.+|+    ..-+++.|++||...|-... ..-.++......+..
T Consensus       140 ~dl~~~~N~i~slp~--~~~~~~~l~~l~~~~n~l~~l~~----~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  140 EDLDATNNQISSLPE--DMVNLSKLSKLDLEGNKLKALPE----NHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYL  213 (565)
T ss_pred             hhhhccccccccCch--HHHHHHHHHHhhccccchhhCCH----HHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence            888888888888876  77777788888888888888777    34447788888877654321 111223333333322


Q ss_pred             h-ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhh-cccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCccc
Q 023443          170 E-SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIV-NSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVK  247 (282)
Q Consensus       170 ~-~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~-~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~  247 (282)
                      - +...++| +|+      .+..|+.+.++.|+|+.+|.+.. .++++.+||+.+|++  ..+|.+++.......+|.+.
T Consensus       214 ~~Nki~~lP-ef~------gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL~rLDlSN  284 (565)
T KOG0472|consen  214 RRNKIRFLP-EFP------GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSLERLDLSN  284 (565)
T ss_pred             hhcccccCC-CCC------ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc--ccCchHHHHhhhhhhhcccC
Confidence            2 5566777 676      78888899999999999998875 888999999999999  88899999888788887777


Q ss_pred             ccCCC
Q 023443          248 ENDEK  252 (282)
Q Consensus       248 ~~~~~  252 (282)
                      +..-.
T Consensus       285 N~is~  289 (565)
T KOG0472|consen  285 NDISS  289 (565)
T ss_pred             Ccccc
Confidence            66433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.69  E-value=1.9e-17  Score=159.90  Aligned_cols=78  Identities=24%  Similarity=0.395  Sum_probs=39.4

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCC------------------CCCccCeEeccCCcCcccCC
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP------------------HLNRLGTLIINNNRITRINP   81 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~------------------~l~~L~~L~L~~N~l~~~~~   81 (282)
                      +|+.|++++|+|+.+|..   +++|++|++++|+|+.+|.+.                  ...+|+.|++++|+++.+|.
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~  299 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV  299 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence            456666666666665542   345666666666665554211                  01233344444444444432


Q ss_pred             CcccCCccccEEeccCCcCCCCC
Q 023443           82 NIGEFLPKLHTLVLTNNRLVNLV  104 (282)
Q Consensus        82 ~~~~~l~~L~~L~L~~N~l~~~~  104 (282)
                          ..++|+.|++++|+|+.+|
T Consensus       300 ----~p~~L~~LdLS~N~L~~Lp  318 (788)
T PRK15387        300 ----LPPGLQELSVSDNQLASLP  318 (788)
T ss_pred             ----cccccceeECCCCccccCC
Confidence                1245666666666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=9.7e-18  Score=161.87  Aligned_cols=179  Identities=20%  Similarity=0.257  Sum_probs=114.6

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~   99 (282)
                      +|+.|++++|+|+.+|..   +++|+.|++++|+|+.+|.+.  ..|+.|++++|+++.+|.    ...+|++|+|++|+
T Consensus       283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp--~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~  353 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQ  353 (788)
T ss_pred             hcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc--ccccccccccCccccccc----cccccceEecCCCc
Confidence            445555555555555542   356778888888877776432  356667777777777653    12468888888888


Q ss_pred             CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh----ccccc
Q 023443          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE----SMKTL  175 (282)
Q Consensus       100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~----~~~~~  175 (282)
                      |+.+|.  .   ..+|+.|++++|+|+.+|.    .   ..+|+.|++++|.+......  .   ..+..+    +....
T Consensus       354 Ls~LP~--l---p~~L~~L~Ls~N~L~~LP~----l---~~~L~~LdLs~N~Lt~LP~l--~---s~L~~LdLS~N~Lss  416 (788)
T PRK15387        354 LASLPT--L---PSELYKLWAYNNRLTSLPA----L---PSGLKELIVSGNRLTSLPVL--P---SELKELMVSGNRLTS  416 (788)
T ss_pred             cCCCCC--C---CcccceehhhccccccCcc----c---ccccceEEecCCcccCCCCc--c---cCCCEEEccCCcCCC
Confidence            888775  2   2456677777777777775    1   24677777777654321100  0   001111    12222


Q ss_pred             cCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443          176 MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       176 ~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                      +|..         ..+|+.|++++|+|+.||..+.++++|+.|++++|.| +|.+|..+
T Consensus       417 IP~l---------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L-s~~~~~~L  465 (788)
T PRK15387        417 LPML---------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL-SERTLQAL  465 (788)
T ss_pred             CCcc---------hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC-CchHHHHH
Confidence            3322         2367889999999999999999999999999999999 67766654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.66  E-value=1.9e-18  Score=164.02  Aligned_cols=197  Identities=21%  Similarity=0.255  Sum_probs=134.9

Q ss_pred             CCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~   96 (282)
                      ..+|+++++++|+++.+|.+++.+.+|+.++..+|+++.+| .+...++|+.|.+.+|.++.+|+.. .++.+|++|+|.
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l-e~~~sL~tLdL~  318 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL-EGLKSLRTLDLQ  318 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc-cccceeeeeeeh
Confidence            45677788888888888877777888888888888887776 5666777777777777777777655 367777777777


Q ss_pred             CCcCCCCCCCCCCCC-------------------------CCCccEEEeeCCcCC--ccCCchHHHHhhCCCCcEecCcc
Q 023443           97 NNRLVNLVEIDPLTS-------------------------LPKLQFLSLLDNSIT--KKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        97 ~N~l~~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~--~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      .|.|..+|+ ..+..                         .+.|+.|++.+|.++  .+|     .+.+..+|+.|+|++
T Consensus       319 ~N~L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-----~l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  319 SNNLPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-----VLVNFKHLKVLHLSY  392 (1081)
T ss_pred             hccccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-----hhccccceeeeeecc
Confidence            777777665 12221                         223444455555554  222     356666777777777


Q ss_pred             cHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCC
Q 023443          150 ERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQ  229 (282)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~  229 (282)
                      |++                     +.+|+...     .++..|+.|+||+|+++.||..+++|+.|++|...+|++  ..
T Consensus       393 NrL---------------------~~fpas~~-----~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l--~~  444 (1081)
T KOG0618|consen  393 NRL---------------------NSFPASKL-----RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL--LS  444 (1081)
T ss_pred             ccc---------------------ccCCHHHH-----hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce--ee
Confidence            653                     33443322     366778888888888888888888888888888888888  77


Q ss_pred             CCCCCCCCCCCCCCCcccccC
Q 023443          230 LPADLKIPDYDSGSKDVKEND  250 (282)
Q Consensus       230 iP~~l~~~~~~~~~~~~~~~~  250 (282)
                      +| ++.......-+|++.++.
T Consensus       445 fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  445 FP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             ch-hhhhcCcceEEecccchh
Confidence            77 777666666666666653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=6.1e-17  Score=156.84  Aligned_cols=197  Identities=20%  Similarity=0.273  Sum_probs=135.9

Q ss_pred             cCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCC
Q 023443            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      |+.+.|...+.. -.++|+.|++++|.|+.+|..+.  .+|+.|+|++|.+..+| .+.  .+|+.|++++|+++.+|..
T Consensus       206 Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~  280 (754)
T PRK15370        206 LDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPEN  280 (754)
T ss_pred             ecCCCCCcCChh-hccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccc
Confidence            344444443321 13589999999999999986553  57999999999999887 443  5789999999999988765


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE  162 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~  162 (282)
                      ++   ++|++|++++|+|+.+|.  .+.  ++|+.|++++|.++.+|..    +  .++|+.|++++|.+....   ...
T Consensus       281 l~---~sL~~L~Ls~N~Lt~LP~--~lp--~sL~~L~Ls~N~Lt~LP~~----l--~~sL~~L~Ls~N~Lt~LP---~~l  344 (754)
T PRK15370        281 LP---EELRYLSVYDNSIRTLPA--HLP--SGITHLNVQSNSLTALPET----L--PPGLKTLEAGENALTSLP---ASL  344 (754)
T ss_pred             cC---CCCcEEECCCCccccCcc--cch--hhHHHHHhcCCccccCCcc----c--cccceeccccCCccccCC---hhh
Confidence            53   479999999999988875  332  4677888888888877762    2  257777777775532210   000


Q ss_pred             HHHHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443          163 MEEEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       163 ~~~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                      . ..+..+    +....+|..+.        +.|+.|++++|+|+.+|+.+..  +|+.|++++|+|  ..+|..+
T Consensus       345 ~-~sL~~L~Ls~N~L~~LP~~lp--------~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L--~~LP~sl  407 (754)
T PRK15370        345 P-PELQVLDVSKNQITVLPETLP--------PTITTLDVSRNALTNLPENLPA--ALQIMQASRNNL--VRLPESL  407 (754)
T ss_pred             c-CcccEEECCCCCCCcCChhhc--------CCcCEEECCCCcCCCCCHhHHH--HHHHHhhccCCc--ccCchhH
Confidence            0 011111    22233444332        4789999999999999988754  699999999999  5777654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.65  E-value=4.1e-19  Score=160.94  Aligned_cols=191  Identities=20%  Similarity=0.255  Sum_probs=161.0

Q ss_pred             CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~   94 (282)
                      ..+..-...||+.|++..+|..++.+..|+.+.|.+|.|..+| .+.++..|++++|+.|+++.+|.+++ .|+ |+.|.
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~lp-Lkvli  149 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DLP-LKVLI  149 (722)
T ss_pred             ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh-cCc-ceeEE
Confidence            4556667789999999999988888889999999999999987 78899999999999999999988886 554 89999


Q ss_pred             ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT  174 (282)
Q Consensus        95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (282)
                      +++|+++.+|.  .++.+..|..|+.+.|.+.++|.    .++.+.+|+.|.++.|+.                     .
T Consensus       150 ~sNNkl~~lp~--~ig~~~tl~~ld~s~nei~slps----ql~~l~slr~l~vrRn~l---------------------~  202 (722)
T KOG0532|consen  150 VSNNKLTSLPE--EIGLLPTLAHLDVSKNEIQSLPS----QLGYLTSLRDLNVRRNHL---------------------E  202 (722)
T ss_pred             EecCccccCCc--ccccchhHHHhhhhhhhhhhchH----HhhhHHHHHHHHHhhhhh---------------------h
Confidence            99999999987  78888889999999999999998    688899998888887764                     2


Q ss_pred             ccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCC
Q 023443          175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK  244 (282)
Q Consensus       175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~  244 (282)
                      .+|.+..       .-.|..||+|+|+++.||-.|.+++.|++|-|.+|.|  .+-|.+|+..++.-.+.
T Consensus       203 ~lp~El~-------~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL--qSPPAqIC~kGkVHIFK  263 (722)
T KOG0532|consen  203 DLPEELC-------SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL--QSPPAQICEKGKVHIFK  263 (722)
T ss_pred             hCCHHHh-------CCceeeeecccCceeecchhhhhhhhheeeeeccCCC--CCChHHHHhccceeeee
Confidence            2455544       3368899999999999999999999999999999999  66688888766654433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.64  E-value=1.8e-18  Score=150.83  Aligned_cols=199  Identities=20%  Similarity=0.252  Sum_probs=116.7

Q ss_pred             eeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccC-CcCcccCCCcccCCccccEEecc
Q 023443           21 ERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTLVLT   96 (282)
Q Consensus        21 L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~   96 (282)
                      .+.++|..|+|+.|| ..|..+++|+.||||+|.|+.| | +|.++.+|..|-+-+ |+|+.+|.+.|.++.+|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            445566666666665 4555666666666666666655 3 555555555554433 56666665555555555555444


Q ss_pred             ------------------------CCcCCCCCCCCCCCCCCCccEEEeeCCcCC--------------------------
Q 023443           97 ------------------------NNRLVNLVEIDPLTSLPKLQFLSLLDNSIT--------------------------  126 (282)
Q Consensus        97 ------------------------~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~--------------------------  126 (282)
                                              .|.+..++. ..|..+..++.+.+..|++-                          
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence                                    444444443 34555555555555555311                          


Q ss_pred             ----------ccCCchH-----------------------HHHhhCCCCcEecCcccHH--HHHHhccChhHHHHHhhh-
Q 023443          127 ----------KKPNYRL-----------------------YVIHKLKSLRVLDFKKERM--EAASLFASEEMEEEAKKE-  170 (282)
Q Consensus       127 ----------~ip~~~~-----------------------~~l~~l~~L~~L~ls~~~~--~~~~~~~~~~~~~~~~~~-  170 (282)
                                +++..+|                       ..|..+++|+.|++++|++  ....+|.+....+.+..- 
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                      1111111                       1367788888888888655  345777776655544332 


Q ss_pred             ccccccCCCCCCCcchhhcCCCeeeCCChhHHHH-HHHHhhcccChHHHHHHHHhh
Q 023443          171 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA-IKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       171 ~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      +...++...++     .++.+|+.|+|.+|+|+. -|.+|..+.+|.+|++..|.+
T Consensus       308 N~l~~v~~~~f-----~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  308 NKLEFVSSGMF-----QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             chHHHHHHHhh-----hccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            44444444333     477888888888888884 556778888888888777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.61  E-value=5.3e-16  Score=150.36  Aligned_cols=198  Identities=21%  Similarity=0.302  Sum_probs=96.1

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      .|+.|+|++|+|+.+|..+.  .+|++|++++|.|+.+| .+.  .+|+.|+|++|.+..+|..+.   .+|++|++++|
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N  272 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP---SALQSLDLFHN  272 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh---CCCCEEECcCC
Confidence            45555555555555554332  35555555555555554 222  245555555555555544332   34555666666


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhh-hccccc
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKK-ESMKTL  175 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~-~~~~~~  175 (282)
                      .|+.+|.  .+.  ++|+.|++++|+|+.+|..    +.  ++|+.|++++|.+...  ..+.   ....+.. .+..+.
T Consensus       273 ~L~~LP~--~l~--~sL~~L~Ls~N~Lt~LP~~----lp--~sL~~L~Ls~N~Lt~LP~~l~~---sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        273 KISCLPE--NLP--EELRYLSVYDNSIRTLPAH----LP--SGITHLNVQSNSLTALPETLPP---GLKTLEAGENALTS  339 (754)
T ss_pred             ccCcccc--ccC--CCCcEEECCCCccccCccc----ch--hhHHHHHhcCCccccCCccccc---cceeccccCCcccc
Confidence            6555544  222  3555666666666555541    11  2455555555443210  0000   0000000 011222


Q ss_pred             cCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCC
Q 023443          176 MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDE  251 (282)
Q Consensus       176 ~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~  251 (282)
                      +|..+.        ++|+.|++++|+|+.+|..+.  ++|+.|++++|.|  ..||+.+..  ....++...++..
T Consensus       340 LP~~l~--------~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~L--t~LP~~l~~--sL~~LdLs~N~L~  401 (754)
T PRK15370        340 LPASLP--------PELQVLDVSKNQITVLPETLP--PTITTLDVSRNAL--TNLPENLPA--ALQIMQASRNNLV  401 (754)
T ss_pred             CChhhc--------CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcC--CCCCHhHHH--HHHHHhhccCCcc
Confidence            332221        466677777777776666553  4667777777777  466665532  2333444444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.57  E-value=1.5e-17  Score=157.98  Aligned_cols=210  Identities=16%  Similarity=0.192  Sum_probs=151.6

Q ss_pred             ccCHHHHhcCCC-CCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccC
Q 023443            3 RLTADLIWKSPH-FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         3 ~l~~~~i~~~~~-~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      .++.+.+..-+. +..+.+|+.++..+|+|..+|..+....+|+.|...+|.+..+| ....++.|++|+|..|+|..+|
T Consensus       247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  247 DISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             ecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc
Confidence            344455554443 45678888888888888888877777888888888888888886 4455888888888888888776


Q ss_pred             CCcc-------------------------cCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHH
Q 023443           81 PNIG-------------------------EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV  135 (282)
Q Consensus        81 ~~~~-------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~  135 (282)
                      +..+                         ...+.|+.|.+.+|+++.-.- ..+.+..+|++|+|++|++..+|..   .
T Consensus       327 ~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~-p~l~~~~hLKVLhLsyNrL~~fpas---~  402 (1081)
T KOG0618|consen  327 DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF-PVLVNFKHLKVLHLSYNRLNSFPAS---K  402 (1081)
T ss_pred             hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch-hhhccccceeeeeecccccccCCHH---H
Confidence            5443                         134456777888888875322 2677889999999999999999986   6


Q ss_pred             HhhCCCCcEecCcccHHHHHH--hccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHH--HHHHhhc
Q 023443          136 IHKLKSLRVLDFKKERMEAAS--LFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA--IKAAIVN  211 (282)
Q Consensus       136 l~~l~~L~~L~ls~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~l~~  211 (282)
                      +.++..|+.|++|+|++..-.  .........+....+....+| ++.      .++.|+.+|+|.|+|+.  +|.. ..
T Consensus       403 ~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~------~l~qL~~lDlS~N~L~~~~l~~~-~p  474 (1081)
T KOG0618|consen  403 LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA------QLPQLKVLDLSCNNLSEVTLPEA-LP  474 (1081)
T ss_pred             HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhh------hcCcceEEecccchhhhhhhhhh-CC
Confidence            788999999999998764322  111111111222225555677 666      79999999999999994  4444 44


Q ss_pred             ccChHHHHHHHHh
Q 023443          212 SQTLEEVARLEKV  224 (282)
Q Consensus       212 ~~~L~~L~l~~N~  224 (282)
                      +++|++||+++|.
T Consensus       475 ~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNT  487 (1081)
T ss_pred             CcccceeeccCCc
Confidence            4899999999997

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.51  E-value=1.2e-15  Score=133.19  Aligned_cols=197  Identities=21%  Similarity=0.202  Sum_probs=137.1

Q ss_pred             EEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC-Cc
Q 023443           23 ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN-NR   99 (282)
Q Consensus        23 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~   99 (282)
                      ..+-++-.+++||..+  ...-..++|..|+|+.||  .|+.+++|+.|+|++|.|+.|.|+.|.++.+|..|-+.+ |+
T Consensus        50 ~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             eEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            4567777888888654  357788999999999998  899999999999999999999999999999988887766 99


Q ss_pred             CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHH--HH----------------------
Q 023443          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERME--AA----------------------  155 (282)
Q Consensus       100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~--~~----------------------  155 (282)
                      |+.+|. +.|+++.+|+.|.+.-|++..++..   .|..+++|..|.+..|...  +.                      
T Consensus       128 I~~l~k-~~F~gL~slqrLllNan~i~Cir~~---al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  128 ITDLPK-GAFGGLSSLQRLLLNANHINCIRQD---ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             hhhhhh-hHhhhHHHHHHHhcChhhhcchhHH---HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence            999998 7888888888888888888877766   4455555555544442110  00                      


Q ss_pred             -----------------HhccChhHHHHHh----------------hh---ccccccCCCCCCCcchhhcCCCeeeCCCh
Q 023443          156 -----------------SLFASEEMEEEAK----------------KE---SMKTLMPVEVPNVSEEEEQQTPKVVAPTP  199 (282)
Q Consensus       156 -----------------~~~~~~~~~~~~~----------------~~---~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~  199 (282)
                                       .+|....+..+..                ..   ......|..+....-...+++|++++|++
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence                             0111000110000                00   00011122222111125789999999999


Q ss_pred             hHHHHHH-HHhhcccChHHHHHHHHhh
Q 023443          200 EQIIAIK-AAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       200 N~l~~ip-~~l~~~~~L~~L~l~~N~l  225 (282)
                      |+|+.|- .+|..+..+++|.+..|+|
T Consensus       284 N~i~~i~~~aFe~~a~l~eL~L~~N~l  310 (498)
T KOG4237|consen  284 NKITRIEDGAFEGAAELQELYLTRNKL  310 (498)
T ss_pred             CccchhhhhhhcchhhhhhhhcCcchH
Confidence            9999765 5788888888888777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.49  E-value=2.9e-15  Score=136.77  Aligned_cols=177  Identities=24%  Similarity=0.336  Sum_probs=103.9

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCC-CCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATED-QFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~-~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      ....++.++.|++.+|.++.||.....+. +|+.|++++|.+..+| .+..++.|+.|++++|+++.+++... .++.|+
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~  189 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLN  189 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hhhhhh
Confidence            34444556666666666666666555553 6666666666666664 55666666666666666666655442 556666


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES  171 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~  171 (282)
                      .|++++|+++.+|.  ....+..|+.+.+++|++..++.    .+..+.++..+.+++++...                 
T Consensus       190 ~L~ls~N~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~-----------------  246 (394)
T COG4886         190 NLDLSGNKISDLPP--EIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLED-----------------  246 (394)
T ss_pred             heeccCCccccCch--hhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeee-----------------
Confidence            66666666666665  33444456666666665444444    35555666555555544311                 


Q ss_pred             cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                          ++..+.      .+..++.|++++|+++.++. ++...+++.|++++|.+
T Consensus       247 ----~~~~~~------~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         247 ----LPESIG------NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ----ccchhc------cccccceecccccccccccc-ccccCccCEEeccCccc
Confidence                122222      45566677777777776666 66666666666666655

>PLN03210 Resistant to P

Probab=99.47  E-value=3.8e-14  Score=144.94  Aligned_cols=88  Identities=19%  Similarity=0.317  Sum_probs=54.6

Q ss_pred             CCCCceeEEEecCCccccccccccCCCCCcEEeccCCC-ccccCCCCCCCccCeEeccCC-cCcccCCCcccCCccccEE
Q 023443           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE-IVKLENMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~-l~~i~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L   93 (282)
                      ..+.+|+.|++++|.|..++..+..+++|+.|+|+++. +..+|.+..+++|++|+|++| .+..+|..+ ..+++|+.|
T Consensus       608 f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L  686 (1153)
T PLN03210        608 FRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDL  686 (1153)
T ss_pred             CCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh-hccCCCCEE
Confidence            34566777777777777777666667777777777654 555666666667777777665 344454443 356666666


Q ss_pred             eccCC-cCCCCC
Q 023443           94 VLTNN-RLVNLV  104 (282)
Q Consensus        94 ~L~~N-~l~~~~  104 (282)
                      ++++| .+..+|
T Consensus       687 ~L~~c~~L~~Lp  698 (1153)
T PLN03210        687 DMSRCENLEILP  698 (1153)
T ss_pred             eCCCCCCcCccC
Confidence            66654 344444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.38  E-value=1e-12  Score=134.51  Aligned_cols=211  Identities=17%  Similarity=0.154  Sum_probs=139.1

Q ss_pred             CCCCCCC-CceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCc-CcccCCCcccCCc
Q 023443           12 SPHFFNA-IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNR-ITRINPNIGEFLP   88 (282)
Q Consensus        12 ~~~~~~l-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~   88 (282)
                      |..|..+ .+|+.|++.++.++.+|..+. +.+|+.|++++|.+..++ ++..+++|++|+|+++. +..+| . +..++
T Consensus       581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~-~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~  657 (1153)
T PLN03210        581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFR-PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D-LSMAT  657 (1153)
T ss_pred             CcchhhcCcccEEEEecCCCCCCCCCcCC-ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c-cccCC
Confidence            3344444 458888888888888887764 788999999999988886 77888999999998764 56665 3 35788


Q ss_pred             cccEEeccCCc-CCCCCCCCCCCCCCCccEEEeeCC-cCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443           89 KLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE  166 (282)
Q Consensus        89 ~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~  166 (282)
                      +|++|++++|. +..+|.  .++.+++|+.|++++| .+..+|..    + ++++|+.|+++++..... +.........
T Consensus       658 ~Le~L~L~~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~-~p~~~~nL~~  729 (1153)
T PLN03210        658 NLETLKLSDCSSLVELPS--SIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKS-FPDISTNISW  729 (1153)
T ss_pred             cccEEEecCCCCccccch--hhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCccc-cccccCCcCe
Confidence            99999998874 667776  7888999999999885 57788873    3 678888888887432110 0000000000


Q ss_pred             Hh-hhccccccCCCC----------------------CCCcc--hhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHH
Q 023443          167 AK-KESMKTLMPVEV----------------------PNVSE--EEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVAR  220 (282)
Q Consensus       167 ~~-~~~~~~~~p~~~----------------------~~~~~--~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l  220 (282)
                      +. ..+....+|..+                      ..+..  ....++|+.|++++|... .+|.+++++++|+.|++
T Consensus       730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L  809 (1153)
T PLN03210        730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI  809 (1153)
T ss_pred             eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence            00 001111122211                      00000  012357888888888544 79999999999999999


Q ss_pred             HHHhhhCCCCCCCC
Q 023443          221 LEKVLKSGQLPADL  234 (282)
Q Consensus       221 ~~N~l~~g~iP~~l  234 (282)
                      +++.. .+.+|..+
T Consensus       810 s~C~~-L~~LP~~~  822 (1153)
T PLN03210        810 ENCIN-LETLPTGI  822 (1153)
T ss_pred             CCCCC-cCeeCCCC
Confidence            87542 27888776

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=2.1e-13  Score=109.76  Aligned_cols=120  Identities=33%  Similarity=0.514  Sum_probs=37.4

Q ss_pred             ecCCccccccccccCCCCCcEEeccCCCccccCCCC-CCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCC
Q 023443           26 LRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV  104 (282)
Q Consensus        26 Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  104 (282)
                      |..+.|+.++... ++.+++.|+|++|.|+.+..++ .+.+|+.|+|++|.|+.+. ++ ..++.|+.|++++|+|+.+.
T Consensus         4 lt~~~i~~~~~~~-n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    4 LTANMIEQIAQYN-NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-C
T ss_pred             ccccccccccccc-cccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCCCccc
Confidence            4455566555433 3556788888888888887665 5778888888888888874 33 46788888888888888775


Q ss_pred             CCCCC-CCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          105 EIDPL-TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       105 ~~~~~-~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      .  .+ ..+++|+.|++++|+|..+....  .+..+++|+.|++.+|..
T Consensus        81 ~--~l~~~lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   81 E--GLDKNLPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             H--HHHHH-TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GG
T ss_pred             c--chHHhCCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCcc
Confidence            4  33 35778888888888887655422  366778888888887654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.35  E-value=4.4e-13  Score=122.37  Aligned_cols=184  Identities=24%  Similarity=0.354  Sum_probs=149.1

Q ss_pred             ccCHHHHhcCCCCCCCC--ceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCC-CCCccCeEeccCCcCccc
Q 023443            3 RLTADLIWKSPHFFNAI--KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRI   79 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~--~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~-~l~~L~~L~L~~N~l~~~   79 (282)
                      .+..+.+.+.+......  +|+.|++++|.+..+|..+..+++|+.|++++|+++.+|... .++.|+.|++++|+++.+
T Consensus       122 ~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l  201 (394)
T COG4886         122 DLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL  201 (394)
T ss_pred             ecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccC
Confidence            34455566655555554  899999999999999988889999999999999999998544 899999999999999999


Q ss_pred             CCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhcc
Q 023443           80 NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFA  159 (282)
Q Consensus        80 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~  159 (282)
                      |+.+ ..+..|+++.+++|.+...+.  .+..+.++..+.+.+|++..++.    .++.++.+++|++++|.+       
T Consensus       202 ~~~~-~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~----~~~~l~~l~~L~~s~n~i-------  267 (394)
T COG4886         202 PPEI-ELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPE----SIGNLSNLETLDLSNNQI-------  267 (394)
T ss_pred             chhh-hhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccc----hhccccccceeccccccc-------
Confidence            8875 256679999999997666665  78889999999999999998777    688999999999999774       


Q ss_pred             ChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHH
Q 023443          160 SEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARL  221 (282)
Q Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~  221 (282)
                                    ..++. +.      .+.+++.+++++|.++.+++....+..+......
T Consensus       268 --------------~~i~~-~~------~~~~l~~L~~s~n~~~~~~~~~~~~~~~~~~~~~  308 (394)
T COG4886         268 --------------SSISS-LG------SLTNLRELDLSGNSLSNALPLIALLLLLLELLLN  308 (394)
T ss_pred             --------------ccccc-cc------ccCccCEEeccCccccccchhhhccchhHHhhhh
Confidence                          22232 33      6789999999999999777666666555554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.33  E-value=4.4e-13  Score=113.93  Aligned_cols=177  Identities=21%  Similarity=0.279  Sum_probs=107.9

Q ss_pred             CCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC-------------------------CCCCCccCeEecc
Q 023443           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-------------------------MPHLNRLGTLIIN   72 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~-------------------------~~~l~~L~~L~L~   72 (282)
                      +.+|+.+.+|++.-..|-+....-+.|+++.+.+..++..|.                         +.....|+.+||+
T Consensus       213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS  292 (490)
T KOG1259|consen  213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS  292 (490)
T ss_pred             hhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence            345555666665544444333334455555555554442211                         1123446666666


Q ss_pred             CCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           73 NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +|.|+.+..++ .-.|.++.|++++|.|..+.   .+..+++|+.|||++|.++.+..    +-..+.+.+.|.+++|.+
T Consensus       293 ~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~N~Ls~~~G----wh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  293 GNLITQIDESV-KLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSGNLLAECVG----WHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             ccchhhhhhhh-hhccceeEEeccccceeeeh---hhhhcccceEeecccchhHhhhh----hHhhhcCEeeeehhhhhH
Confidence            66666665555 25566666666666666553   35556666666666666666655    234455666666666543


Q ss_pred             HHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH--HHhhcccChHHHHHHHHhhhCCCC
Q 023443          153 EAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVLKSGQL  230 (282)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~l~~~~~L~~L~l~~N~l~~g~i  230 (282)
                      ..                            ++..+.+-+|..||+++|+|..+.  ..|++++.|+.+.+.+|.+  ..+
T Consensus       365 E~----------------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl--~~~  414 (490)
T KOG1259|consen  365 ET----------------------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL--AGS  414 (490)
T ss_pred             hh----------------------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc--ccc
Confidence            21                            111135668999999999999776  5699999999999999999  666


Q ss_pred             CC
Q 023443          231 PA  232 (282)
Q Consensus       231 P~  232 (282)
                      |.
T Consensus       415 vd  416 (490)
T KOG1259|consen  415 VD  416 (490)
T ss_pred             ch
Confidence            64

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.32  E-value=1.1e-14  Score=132.35  Aligned_cols=174  Identities=24%  Similarity=0.334  Sum_probs=135.8

Q ss_pred             cCHHHHhc-CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCC
Q 023443            4 LTADLIWK-SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINP   81 (282)
Q Consensus         4 l~~~~i~~-~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~   81 (282)
                      |+.+.+.. |..+..+..|..+.|..|.|..||..++++..|++|||+.|+++.+| .+..|+ |+.|-+++|+++.+|+
T Consensus        82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~  160 (722)
T KOG0532|consen   82 LSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPE  160 (722)
T ss_pred             ccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCc
Confidence            34444443 22355566788888888888888888888888889999999988887 555554 7888888999988888


Q ss_pred             CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccCh
Q 023443           82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASE  161 (282)
Q Consensus        82 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~  161 (282)
                      .+. .+..|..|+.+.|.+..+|+  .++++.+|+.|.+..|++..+|.    .++.| .|..||+|.|+          
T Consensus       161 ~ig-~~~tl~~ld~s~nei~slps--ql~~l~slr~l~vrRn~l~~lp~----El~~L-pLi~lDfScNk----------  222 (722)
T KOG0532|consen  161 EIG-LLPTLAHLDVSKNEIQSLPS--QLGYLTSLRDLNVRRNHLEDLPE----ELCSL-PLIRLDFSCNK----------  222 (722)
T ss_pred             ccc-cchhHHHhhhhhhhhhhchH--HhhhHHHHHHHHHhhhhhhhCCH----HHhCC-ceeeeecccCc----------
Confidence            886 78888888999998888887  78888888888888888888888    56643 57778888877          


Q ss_pred             hHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhccc
Q 023443          162 EMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQ  213 (282)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~  213 (282)
                                 ...+|-.|.      +|+.|++|-|.+|.|..=|..|+-..
T Consensus       223 -----------is~iPv~fr------~m~~Lq~l~LenNPLqSPPAqIC~kG  257 (722)
T KOG0532|consen  223 -----------ISYLPVDFR------KMRHLQVLQLENNPLQSPPAQICEKG  257 (722)
T ss_pred             -----------eeecchhhh------hhhhheeeeeccCCCCCChHHHHhcc
Confidence                       355777777      88888888888888888777764433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.30  E-value=1.7e-13  Score=121.18  Aligned_cols=188  Identities=20%  Similarity=0.221  Sum_probs=89.2

Q ss_pred             CCCCCceeEEEecCCccc-cccccccCCC---CCcEEeccCCCcccc-----C-CCCCC-CccCeEeccCCcCcccC---
Q 023443           15 FFNAIKERELDLRGNKIA-VIENLGATED---QFDTIDLSDNEIVKL-----E-NMPHL-NRLGTLIINNNRITRIN---   80 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~---~L~~L~Ls~N~l~~i-----~-~~~~l-~~L~~L~L~~N~l~~~~---   80 (282)
                      +..+++|+.|++++|.+. ..+..+..+.   +|++|++++|.++..     . .+..+ ++|+.|++++|.+++-.   
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            344556666666666554 2222222222   266666666655521     1 23334 55666666666655210   


Q ss_pred             -CCcccCCccccEEeccCCcCCC-----CCCCCCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccHHH
Q 023443           81 -PNIGEFLPKLHTLVLTNNRLVN-----LVEIDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKERME  153 (282)
Q Consensus        81 -~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~~~  153 (282)
                       ...+..+++|++|++++|.+++     ++.  .+..+++|+.|++++|.++......+ ..+..+++|++|+++++...
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAE--GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHH--HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence             1122344556666666665552     111  23334556666666665552221100 13444556666666664432


Q ss_pred             HHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-----HHHHHhhcccChHHHHHHHHhh
Q 023443          154 AASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-----AIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      .....      .....      ++.         ....|+.|++++|.++     .+...+..+++|+.+++++|.+
T Consensus       235 ~~~~~------~l~~~------~~~---------~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         235 DAGAA------ALASA------LLS---------PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             hHHHH------HHHHH------Hhc---------cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            11000      00000      000         1246677777777663     4455566666777777777766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=2e-13  Score=116.04  Aligned_cols=128  Identities=27%  Similarity=0.293  Sum_probs=108.0

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      ..|+.+|||+|.|+.|..+..-++.++.|++|+|.|..+..+..+++|+.|||++|.++.+.. +-..+.+.++|.|+.|
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhh
Confidence            458899999999999998888889999999999999999888899999999999999998854 3347889999999999


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      .|..+.   .++.+-+|..||+++|+|..+....  .++++|-|+++.+.+|.+
T Consensus       363 ~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  363 KIETLS---GLRKLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hHhhhh---hhHhhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCc
Confidence            988764   5778888999999999998665433  478889999888888654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.23  E-value=7.5e-13  Score=121.68  Aligned_cols=193  Identities=24%  Similarity=0.227  Sum_probs=124.7

Q ss_pred             CCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC-CCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      .+..+..+.+..|.|..+-..+..+.+|+.|++..|.|..+.. +..+++|++|++++|.|+.+.+-  ..++.|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l--~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL--STLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch--hhccchhhhee
Confidence            3555666667777777655556667778888888888877776 77778888888888887777442  35666778888


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHH-HhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh-ccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV-IHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE-SMK  173 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~-~~~  173 (282)
                      ++|.|+.+.   .+..++.|+.+++++|.++.++.    . ...+.+++.+++.+|.+.....+............ +..
T Consensus       148 ~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~----~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  148 SGNLISDIS---GLESLKSLKLLDLSYNRIVDIEN----DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             ccCcchhcc---CCccchhhhcccCCcchhhhhhh----hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccc
Confidence            888877765   35557777788888888777765    2 35667777777777554433322222222111000 111


Q ss_pred             cccCCCCCCCcchhhcC--CCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          174 TLMPVEVPNVSEEEEQQ--TPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       174 ~~~p~~~~~~~~~~~l~--~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      ..+-+ +.      .+.  .|+.+++++|.+..++..+..+..+..+++.+|.+
T Consensus       221 ~~~~~-l~------~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  221 SKLEG-LN------ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             eeccC-cc------cchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence            11110 01      122  27788888888888877788888888888888887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.21  E-value=8e-13  Score=116.82  Aligned_cols=136  Identities=21%  Similarity=0.202  Sum_probs=74.9

Q ss_pred             CCCceeEEEecCCccc-----cccccccCCCCCcEEeccCCCcccc-------C-CCCCCCccCeEeccCCcCcccCCCc
Q 023443           17 NAIKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVKL-------E-NMPHLNRLGTLIINNNRITRINPNI   83 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i-------~-~~~~l~~L~~L~L~~N~l~~~~~~~   83 (282)
                      .+..|++|+++++.++     .++..+...++++.|+++++.+...       + .+..+++|+.|++++|.+....+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            3445777777777763     3444455566677777777766521       1 3455667777777777766433332


Q ss_pred             ccCCcc---ccEEeccCCcCCCCCC---CCCCCCC-CCccEEEeeCCcCCccCC-chHHHHhhCCCCcEecCcccHH
Q 023443           84 GEFLPK---LHTLVLTNNRLVNLVE---IDPLTSL-PKLQFLSLLDNSITKKPN-YRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        84 ~~~l~~---L~~L~L~~N~l~~~~~---~~~~~~l-~~L~~L~L~~N~l~~ip~-~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +..+..   |++|++++|+++....   ...+..+ ++|+.|++++|.++.-.. .....+..+++|+.|+++++.+
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            223333   7777777776653111   0123344 667777777777662110 0111355566677777766543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.17  E-value=2.4e-11  Score=80.89  Aligned_cols=59  Identities=39%  Similarity=0.638  Sum_probs=30.1

Q ss_pred             ccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCc
Q 023443           65 RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS  124 (282)
Q Consensus        65 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~  124 (282)
                      +|++|++++|+++.+++..|.++++|++|++++|.++.+++ ..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCc
Confidence            34455555555555555555455555555555555555544 345555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.16  E-value=3.3e-11  Score=80.21  Aligned_cols=58  Identities=36%  Similarity=0.586  Sum_probs=35.3

Q ss_pred             CCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcC
Q 023443           43 QFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL  100 (282)
Q Consensus        43 ~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  100 (282)
                      +|++|++++|+|+.+|  .|.++++|++|++++|.++.+++..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4555566666555554  455666666666666666666666666666666666666653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.14  E-value=7.1e-12  Score=115.24  Aligned_cols=206  Identities=28%  Similarity=0.287  Sum_probs=143.3

Q ss_pred             cCHHHHhc-CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            4 LTADLIWK-SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         4 l~~~~i~~-~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      +..+.|.. -..+..+.+|..|++.+|.|..|...+..+.+|++|++++|.|+.+.++..++.|+.|++++|.|+.+.. 
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-  157 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-  157 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-
Confidence            45667776 3448889999999999999999988677899999999999999999988899999999999999999854 


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCC-CCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccCh
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDP-LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASE  161 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~  161 (282)
                       +..+..|+.+++++|+++.+..  . ...+.+++.+++.+|.+..+..     +..+..+..+++..|++....-....
T Consensus       158 -~~~l~~L~~l~l~~n~i~~ie~--~~~~~~~~l~~l~l~~n~i~~i~~-----~~~~~~l~~~~l~~n~i~~~~~l~~~  229 (414)
T KOG0531|consen  158 -LESLKSLKLLDLSYNRIVDIEN--DELSELISLEELDLGGNSIREIEG-----LDLLKKLVLLSLLDNKISKLEGLNEL  229 (414)
T ss_pred             -CccchhhhcccCCcchhhhhhh--hhhhhccchHHHhccCCchhcccc-----hHHHHHHHHhhcccccceeccCcccc
Confidence             2358999999999999998875  2 4788999999999999998765     33344444445555443322111111


Q ss_pred             hH--HHHHhh-hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          162 EM--EEEAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       162 ~~--~~~~~~-~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      ..  ...+.. .+.....+..+.      .+..+..+++..|++..+.. +.....+.++....|.+
T Consensus       230 ~~~~L~~l~l~~n~i~~~~~~~~------~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  230 VMLHLRELYLSGNRISRSPEGLE------NLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKL  289 (414)
T ss_pred             hhHHHHHHhcccCcccccccccc------ccccccccchhhcccccccc-ccccchHHHhccCcchh
Confidence            11  111111 122222222233      56677777777777765532 44444555555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=1e-12  Score=113.49  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=32.5

Q ss_pred             hcCCCeeeCCChhHHHH-----HHHHhhcccChHHHHHHHHhh
Q 023443          188 EQQTPKVVAPTPEQIIA-----IKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       188 ~l~~L~~L~Ls~N~l~~-----ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      ..++|+++.|.+|.++.     +-..+...+.|..|+++.|.+
T Consensus       268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            35689999999999982     445678899999999999999

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=2.7e-11  Score=107.56  Aligned_cols=187  Identities=17%  Similarity=0.175  Sum_probs=107.4

Q ss_pred             CCCCceeEEEecCCcccccc---ccccCCCCCcEEeccCCCcccc-C--CCCCCCccCeEeccCCcCcccC-CCcccCCc
Q 023443           16 FNAIKERELDLRGNKIAVIE---NLGATEDQFDTIDLSDNEIVKL-E--NMPHLNRLGTLIINNNRITRIN-PNIGEFLP   88 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip---~~~~~l~~L~~L~Ls~N~l~~i-~--~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~   88 (282)
                      ..|++++.||||+|-|..+-   .....+++|+.|+|+.|.+... .  .-..+++|+.|.|+.|.++.-. ..+...+|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            34666666666666665322   3344566666666666666532 1  1224556666666666665411 12223566


Q ss_pred             cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHh
Q 023443           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAK  168 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~  168 (282)
                      +|+.|+|..|....... ....-+..|+.|+|++|++...+...  ..+.++.|+.|+++.+++.....+          
T Consensus       223 sl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~--~~~~l~~L~~Lnls~tgi~si~~~----------  289 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGY--KVGTLPGLNQLNLSSTGIASIAEP----------  289 (505)
T ss_pred             cHHHhhhhcccccceec-chhhhhhHHhhccccCCccccccccc--ccccccchhhhhccccCcchhcCC----------
Confidence            66666666664222211 13344556666777777666555321  356666666666666543222211          


Q ss_pred             hhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH--HHhhcccChHHHHHHHHhh
Q 023443          169 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       169 ~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~l~~~~~L~~L~l~~N~l  225 (282)
                              +.+..  .....+++|++|+++.|+++..+  ..+..+++|+.|....|.+
T Consensus       290 --------d~~s~--~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  290 --------DVESL--DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             --------Cccch--hhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence                    11111  11135679999999999997655  5688888889888878877

>PLN03150 hypothetical protein; Provisional

Probab=98.94  E-value=1.8e-09  Score=104.02  Aligned_cols=103  Identities=20%  Similarity=0.331  Sum_probs=57.6

Q ss_pred             CcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEee
Q 023443           44 FDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL  121 (282)
Q Consensus        44 L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~  121 (282)
                      ++.|+|++|.+++ +| .+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++..+ ..++++++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEECc
Confidence            5556666666654 34 55566666666666666665434334466666666666666664333 256666666666666


Q ss_pred             CCcCC-ccCCchHHHHhh-CCCCcEecCcccH
Q 023443          122 DNSIT-KKPNYRLYVIHK-LKSLRVLDFKKER  151 (282)
Q Consensus       122 ~N~l~-~ip~~~~~~l~~-l~~L~~L~ls~~~  151 (282)
                      +|+++ .+|.    .+.. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~----~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPA----ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCCh----HHhhccccCceEEecCCc
Confidence            66665 4554    3333 2344455555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.93  E-value=9.5e-12  Score=116.43  Aligned_cols=131  Identities=22%  Similarity=0.235  Sum_probs=105.3

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      .+|...+.++|.+..+..++.-++.|+.|+|++|+++....+..|+.|++|||++|++..+|.-.-.+|. |+.|.+++|
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            3577888999999988888888899999999999999888888899999999999999998763333554 999999999


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA  155 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~  155 (282)
                      .++.+.   .+.++.+|+.||+++|-|.....-.  .++.+..|+.|.|.+|.+.+.
T Consensus       243 ~l~tL~---gie~LksL~~LDlsyNll~~hseL~--pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  243 ALTTLR---GIENLKSLYGLDLSYNLLSEHSELE--PLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             HHHhhh---hHHhhhhhhccchhHhhhhcchhhh--HHHHHHHHHHHhhcCCccccC
Confidence            998875   5778889999999999887543322  367778888889888665443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.83  E-value=7.7e-11  Score=110.50  Aligned_cols=133  Identities=28%  Similarity=0.380  Sum_probs=105.2

Q ss_pred             CCCCCCCCceeEEEecCCccccccc----------ccc----------------------CCCCCcEEeccCCCccccC-
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIEN----------LGA----------------------TEDQFDTIDLSDNEIVKLE-   58 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip~----------~~~----------------------~l~~L~~L~Ls~N~l~~i~-   58 (282)
                      |-.++.+.+|++|.+.++.|...-+          .++                      .+..|...++++|.+..+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence            4467788899999999998753211          111                      1345666788888888775 


Q ss_pred             CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhh
Q 023443           59 NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK  138 (282)
Q Consensus        59 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~  138 (282)
                      ++.-++.|+.|+|++|+++.+.  ....|+.|++|||++|.++.+|.+ ...++. |+.|.+++|.++++-.     +.+
T Consensus       182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l-~~~gc~-L~~L~lrnN~l~tL~g-----ie~  252 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQL-SMVGCK-LQLLNLRNNALTTLRG-----IEN  252 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcccccc-chhhhh-heeeeecccHHHhhhh-----HHh
Confidence            6777889999999999999986  346899999999999999999874 445555 9999999999998875     789


Q ss_pred             CCCCcEecCcccHHH
Q 023443          139 LKSLRVLDFKKERME  153 (282)
Q Consensus       139 l~~L~~L~ls~~~~~  153 (282)
                      +.+|+.||+++|.+.
T Consensus       253 LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLS  267 (1096)
T ss_pred             hhhhhccchhHhhhh
Confidence            999999999997653

>PLN03150 hypothetical protein; Provisional

Probab=98.79  E-value=9.2e-09  Score=99.20  Aligned_cols=103  Identities=23%  Similarity=0.241  Sum_probs=66.3

Q ss_pred             eeEEEecCCccc-cccccccCCCCCcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           21 ERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        21 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      ++.|+|++|.+. .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++..|..+..+++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            666777777776 566666677777777777777763 45 566777777777777777765455455677777777777


Q ss_pred             CcCCCCCCCCCCCC-CCCccEEEeeCCc
Q 023443           98 NRLVNLVEIDPLTS-LPKLQFLSLLDNS  124 (282)
Q Consensus        98 N~l~~~~~~~~~~~-l~~L~~L~L~~N~  124 (282)
                      |.+++..+ ..++. +.++..+++.+|.
T Consensus       500 N~l~g~iP-~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVP-AALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCC-hHHhhccccCceEEecCCc
Confidence            77764433 24443 2345566666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=4e-10  Score=100.19  Aligned_cols=181  Identities=20%  Similarity=0.168  Sum_probs=91.8

Q ss_pred             CCCceeEEEecCCcccccc--ccccCCCCCcEEeccCCCccccC----CCCCCCccCeEeccCCcCcccCC-CcccCCcc
Q 023443           17 NAIKERELDLRGNKIAVIE--NLGATEDQFDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINP-NIGEFLPK   89 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~~i~----~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~   89 (282)
                      ++.+|+.+.|.+..+...+  .....|++++.||||.|-|..+.    -...+++|+.|+|+.|++..... ..-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4455555555555555433  23445556666666666555442    12345566666666665544221 11123455


Q ss_pred             ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhh
Q 023443           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKK  169 (282)
Q Consensus        90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~  169 (282)
                      |+.|.|+.|.++.-.-......+++|..|+|..|....+...   ...-+..|+.|||++|....               
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i~~~L~~LdLs~N~li~---------------  260 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---STKILQTLQELDLSNNNLID---------------  260 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc---hhhhhhHHhhccccCCcccc---------------
Confidence            556666666555211101223455566666655532222211   12334455555555543211               


Q ss_pred             hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHH--HHH-----hhcccChHHHHHHHHhh
Q 023443          170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI--KAA-----IVNSQTLEEVARLEKVL  225 (282)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i--p~~-----l~~~~~L~~L~l~~N~l  225 (282)
                            .+    .....+.+++|..|+++.+.+++|  |+.     ....++|+.|++..|++
T Consensus       261 ------~~----~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  261 ------FD----QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ------cc----cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence                  11    001113677888888888888744  333     35667888888888888

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.65  E-value=2.9e-08  Score=98.48  Aligned_cols=104  Identities=26%  Similarity=0.286  Sum_probs=49.9

Q ss_pred             CCceeEEEecCCc--ccccc-ccccCCCCCcEEeccCCC-ccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccE
Q 023443           18 AIKERELDLRGNK--IAVIE-NLGATEDQFDTIDLSDNE-IVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (282)
Q Consensus        18 l~~L~~L~Ls~N~--l~~ip-~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~   92 (282)
                      +++|+.|-+.+|.  +..++ ..|..++.|++|||++|. +..+| .++.+.+|++|++++..+..+|.++. ++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~-~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG-NLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH-HHHhhhe
Confidence            3345555555553  34444 234445555555555444 44455 44555555555555555555555442 5555555


Q ss_pred             EeccCCcCCCCCCCCCCCCCCCccEEEeeCC
Q 023443           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN  123 (282)
Q Consensus        93 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N  123 (282)
                      |++..+.-...++ .....+++|++|.+..-
T Consensus       623 Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  623 LNLEVTGRLESIP-GILLELQSLRVLRLPRS  652 (889)
T ss_pred             ecccccccccccc-chhhhcccccEEEeecc
Confidence            5555544322222 13333555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.63  E-value=3.1e-08  Score=61.01  Aligned_cols=41  Identities=27%  Similarity=0.345  Sum_probs=27.0

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN   59 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~   59 (282)
                      ++|++|++++|+|+.+|+.+..|++|++|++++|+|+.++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            35677777777777777666677777777777777766553

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.50  E-value=3.4e-09  Score=80.66  Aligned_cols=108  Identities=24%  Similarity=0.254  Sum_probs=66.5

Q ss_pred             ceeEEEecCCcccccccccc---CCCCCcEEeccCCCccccC-CCC-CCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443           20 KERELDLRGNKIAVIENLGA---TEDQFDTIDLSDNEIVKLE-NMP-HLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~---~l~~L~~L~Ls~N~l~~i~-~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~   94 (282)
                      .+..++|+.|+|-.|++...   ....|+..+|++|.+..+| .|. ..+.++.|+|++|.|+.+|.. +..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            45566777777766664433   3345555666777666665 332 334666666666666666666 34666666666


Q ss_pred             ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (282)
Q Consensus        95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~  130 (282)
                      ++.|.+...|.  .+..+.++-.|+..+|.+..||-
T Consensus       107 l~~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  107 LRFNPLNAEPR--VIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             cccCccccchH--HHHHHHhHHHhcCCCCccccCcH
Confidence            66666666665  45556666666666666666665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.50  E-value=4.6e-09  Score=79.94  Aligned_cols=103  Identities=24%  Similarity=0.380  Sum_probs=89.8

Q ss_pred             CCcEEeccCCCccccC----CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEE
Q 023443           43 QFDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL  118 (282)
Q Consensus        43 ~L~~L~Ls~N~l~~i~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L  118 (282)
                      .+..+||+++++-.++    .+.....|+..+|++|.+..+|+.+-...+.++.|++++|.|+.+|.  .+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhc
Confidence            4567899999988664    45677889999999999999999887777899999999999999998  79999999999


Q ss_pred             EeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443          119 SLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus       119 ~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      +++.|++...|.    .+..+.+|-+|+..++.
T Consensus       106 Nl~~N~l~~~p~----vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  106 NLRFNPLNAEPR----VIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ccccCccccchH----HHHHHHhHHHhcCCCCc
Confidence            999999999998    67778888888888754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.47  E-value=1.3e-07  Score=79.42  Aligned_cols=115  Identities=28%  Similarity=0.423  Sum_probs=94.8

Q ss_pred             ccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCC--cCcc-cCCCcccCCccccEEeccCCcCCCCCCCCCCC
Q 023443           34 IENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNN--RITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT  110 (282)
Q Consensus        34 ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N--~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  110 (282)
                      +....-.+..|+.|.+.+..++.+-.|..|++|++|.++.|  +++. ++.-+ ..+++|+++++++|+|+.+..+..+.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhh
Confidence            45555567788888888888888888889999999999999  5544 33333 46799999999999998755444667


Q ss_pred             CCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443          111 SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus       111 ~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      .+.+|..|++.+|..+.+..++...|.-+++|++||-..
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            788899999999999999998888899999999999776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.46  E-value=1e-07  Score=94.67  Aligned_cols=129  Identities=26%  Similarity=0.371  Sum_probs=108.2

Q ss_pred             CCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCC--ccccC--CCCCCCccCeEeccCC-cCcccCCCcccCC
Q 023443           13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE--IVKLE--NMPHLNRLGTLIINNN-RITRINPNIGEFL   87 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~--l~~i~--~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l   87 (282)
                      +...+....+...+-+|.+..++.... ++.|++|-+..|.  +..++  .|..++.|++|||++| .+..+|..+. .+
T Consensus       517 ~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~L  594 (889)
T KOG4658|consen  517 PQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-EL  594 (889)
T ss_pred             ccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hh
Confidence            445556788999999999998886654 5589999999997  67776  3889999999999988 5788888874 89


Q ss_pred             ccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcc
Q 023443           88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        88 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      -+|++|++++..++.+|.  .++.+.+|.+|++..+... .+|.    ....+++|++|.+..
T Consensus       595 i~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPR  651 (889)
T ss_pred             hhhhcccccCCCccccch--HHHHHHhhheeccccccccccccc----hhhhcccccEEEeec
Confidence            999999999999999998  9999999999999988754 4444    567799999998876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.44  E-value=6.6e-08  Score=84.08  Aligned_cols=164  Identities=19%  Similarity=0.187  Sum_probs=106.2

Q ss_pred             CCCCCcEEeccCCCccc--cCC----CCCCCccCeEeccCCcCcccCCCc-------------ccCCccccEEeccCCcC
Q 023443           40 TEDQFDTIDLSDNEIVK--LEN----MPHLNRLGTLIINNNRITRINPNI-------------GEFLPKLHTLVLTNNRL  100 (282)
Q Consensus        40 ~l~~L~~L~Ls~N~l~~--i~~----~~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~L~L~~N~l  100 (282)
                      .+++|++||||.|.|..  ++.    +.+++.|++|+|.+|.+.......             ...-+.|+++..++|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            46688888888888763  332    456788888888888776532221             12346788888888888


Q ss_pred             CCCCCC---CCCCCCCCccEEEeeCCcCCccCC-chHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443          101 VNLVEI---DPLTSLPKLQFLSLLDNSITKKPN-YRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM  176 (282)
Q Consensus       101 ~~~~~~---~~~~~l~~L~~L~L~~N~l~~ip~-~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (282)
                      ..-+..   ..|...+.|+.+.++.|.|..-.. ..+..+.++++|+.|||..|......      ...+.         
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg------s~~La---------  234 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG------SVALA---------  234 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH------HHHHH---------
Confidence            764431   135556788888888888763221 23346788899999999887643321      11111         


Q ss_pred             CCCCCCCcchhhcCCCeeeCCChhHHH-----HHHHHh-hcccChHHHHHHHHhh
Q 023443          177 PVEVPNVSEEEEQQTPKVVAPTPEQII-----AIKAAI-VNSQTLEEVARLEKVL  225 (282)
Q Consensus       177 p~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~l-~~~~~L~~L~l~~N~l  225 (282)
                       ..+.      .++.|+.++++++.++     .+-.++ ...++|++|.+.+|.+
T Consensus       235 -kaL~------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  235 -KALS------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             -HHhc------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence             1111      3457788888887775     344555 4568999999999887

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.43  E-value=7.8e-07  Score=67.87  Aligned_cols=121  Identities=15%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443           13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~   89 (282)
                      ..|.++++|+.+.+.. .+..|+ ..|..+.+|+.+.+..+ +..++  .|.++..++.+.+.. .+..++...|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4688888999999884 678887 67888888999999885 77775  688888899999965 777788888878899


Q ss_pred             ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCc
Q 023443           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLR  143 (282)
Q Consensus        90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~  143 (282)
                      |+.+.+..+ +..++. ..|.++ +|+.+.+.. .+..|+..   .|.++++|+
T Consensus        83 l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~-~~~~i~~~---~F~~~~~l~  129 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS-NITKIEEN---AFKNCTKLK  129 (129)
T ss_dssp             ECEEEETTT--BEEHT-TTTTT--T--EEE-TT-B-SS-------GGG------
T ss_pred             ccccccCcc-ccEEch-hhhcCC-CceEEEECC-CccEECCc---cccccccCC
Confidence            999999776 666666 577787 888888775 66777776   456666653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.42  E-value=1.7e-07  Score=57.68  Aligned_cols=37  Identities=38%  Similarity=0.614  Sum_probs=17.5

Q ss_pred             CCcEEeccCCCccccCC-CCCCCccCeEeccCCcCccc
Q 023443           43 QFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRI   79 (282)
Q Consensus        43 ~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~L~~N~l~~~   79 (282)
                      +|++|++++|+|+.+|. +++|++|++|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            44555555555555543 45555555555555554443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=8e-09  Score=87.34  Aligned_cols=101  Identities=24%  Similarity=0.334  Sum_probs=80.7

Q ss_pred             CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      |+|||..++.....-..+.+.+.|++.++.|..|. ....++.|++|.||-|.|+.+..|..|++|+.|+|..|.|..+.
T Consensus         1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sld   79 (388)
T KOG2123|consen    1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLD   79 (388)
T ss_pred             CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHH
Confidence            78899998887777777888999999999998765 22358889999999999999888888899999999999888875


Q ss_pred             C-CcccCCccccEEeccCCcCCC
Q 023443           81 P-NIGEFLPKLHTLVLTNNRLVN  102 (282)
Q Consensus        81 ~-~~~~~l~~L~~L~L~~N~l~~  102 (282)
                      + ....++++|+.|.|..|.-.+
T Consensus        80 EL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   80 ELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             HHHHHhcCchhhhHhhccCCccc
Confidence            4 223577777878777776544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.21  E-value=1.6e-06  Score=70.25  Aligned_cols=104  Identities=26%  Similarity=0.331  Sum_probs=79.7

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCcccc-CCCC-CCCccCeEeccCCcCcccCC-CcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-ENMP-HLNRLGTLIINNNRITRINP-NIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i-~~~~-~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L   95 (282)
                      .+...+||++|.|..++. |..++.|.+|.+++|.|+.| |.+. -+++|+.|.|.+|+|..+.. .-...|+.|++|.+
T Consensus        42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            356788999999987764 34588999999999999998 4554 45779999999999887532 12247889999999


Q ss_pred             cCCcCCCCCCC--CCCCCCCCccEEEeeCC
Q 023443           96 TNNRLVNLVEI--DPLTSLPKLQFLSLLDN  123 (282)
Q Consensus        96 ~~N~l~~~~~~--~~~~~l~~L~~L~L~~N  123 (282)
                      -+|.++.-...  ..+..+++|+.||+..=
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99998876542  24567899999998754

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.14  E-value=4.8e-06  Score=75.40  Aligned_cols=71  Identities=17%  Similarity=0.330  Sum_probs=42.2

Q ss_pred             CCceeEEEecCCccccccccccCCCCCcEEeccC-CCccccCC-CCCCCccCeEeccCC-cCcccCCCcccCCccccEEe
Q 023443           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSD-NEIVKLEN-MPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~   94 (282)
                      +.+++.|++++|.|+.+|..   ..+|+.|.+++ +.++.+|. +.  .+|++|.+++| .+..+|+       +|+.|+
T Consensus        51 ~~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-------sLe~L~  118 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-------SVRSLE  118 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-------ccceEE
Confidence            46677777777777777621   33577777766 33555552 32  46777777776 5554443       355566


Q ss_pred             ccCCcC
Q 023443           95 LTNNRL  100 (282)
Q Consensus        95 L~~N~l  100 (282)
                      ++.+..
T Consensus       119 L~~n~~  124 (426)
T PRK15386        119 IKGSAT  124 (426)
T ss_pred             eCCCCC
Confidence            655543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=8.3e-07  Score=76.00  Aligned_cols=64  Identities=27%  Similarity=0.420  Sum_probs=48.5

Q ss_pred             CCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc-c--CCchHHHHhhCCCCcEecCcc
Q 023443           86 FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK-K--PNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        86 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-i--p~~~~~~l~~l~~L~~L~ls~  149 (282)
                      .++.+..|+|+.|+|..+..++.+.++++|..|.+++|++.. +  ...+|-.++++++++.|+-+.
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGsk  288 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSK  288 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcc
Confidence            345666778888888887777788899999999999998872 2  222333578899999999876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=2.3e-07  Score=78.43  Aligned_cols=113  Identities=25%  Similarity=0.257  Sum_probs=55.7

Q ss_pred             cCCCCCcEEeccCCCccc-cC-----CCCCCCccCeEeccCCcCcccCCCc-------------ccCCccccEEeccCCc
Q 023443           39 ATEDQFDTIDLSDNEIVK-LE-----NMPHLNRLGTLIINNNRITRINPNI-------------GEFLPKLHTLVLTNNR   99 (282)
Q Consensus        39 ~~l~~L~~L~Ls~N~l~~-i~-----~~~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~L~L~~N~   99 (282)
                      ..|+.|+.++||.|.|.. .|     -+++-+.|.+|.+++|.+..+..+-             ...-|.|+......|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            345666666666666552 11     2345556666666666554332110             0133556666666666


Q ss_pred             CCCCCCC---CCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccH
Q 023443          100 LVNLVEI---DPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus       100 l~~~~~~---~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      +...+..   ..+..=..|+.+.+..|.|..  +..-.|..+..+.+|+.||+..|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            6544320   001111345666666666552  233333445556666666666644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=7.5e-07  Score=76.27  Aligned_cols=198  Identities=18%  Similarity=0.134  Sum_probs=109.6

Q ss_pred             EEEecCCccccccc--cc-cCCCCCcEEeccCCCccccC----CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           23 ELDLRGNKIAVIEN--LG-ATEDQFDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        23 ~L~Ls~N~l~~ip~--~~-~~l~~L~~L~Ls~N~l~~i~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      .|.+-++.|..+.+  .| ..++.++.+||.+|.|+.+.    -+.+++.|++|++++|.+.......-..+.+|+.|-|
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL  128 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL  128 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence            44455555543331  22 34677888888888888764    2467888888888888887644333235668888888


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCcc--CCchHHHHhhC-CCCcEecCcccHHHHHHhccChhHHHHHhhhcc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK--PNYRLYVIHKL-KSLRVLDFKKERMEAASLFASEEMEEEAKKESM  172 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~i--p~~~~~~l~~l-~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~  172 (282)
                      .+..+..-..-..+..++.++.|+++.|.+..+  ...   ..... +.+++|..-.+..  ..|.......+....+++
T Consensus       129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~---c~e~~s~~v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN---CIEDWSTEVLTLHQLPCLE--QLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccc---cccccchhhhhhhcCCcHH--HHHHHHHhHHhhcccchh
Confidence            888765322212455677788888888855422  111   11111 1333333333211  111111111111111111


Q ss_pred             ccccCCCCCCC---cchhhcCCCeeeCCChhHHHHHH--HHhhcccChHHHHHHHHhh
Q 023443          173 KTLMPVEVPNV---SEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       173 ~~~~p~~~~~~---~~~~~l~~L~~L~Ls~N~l~~ip--~~l~~~~~L~~L~l~~N~l  225 (282)
                      .-.....+.+.   .....++.+..|+|+.|+|-...  .++.+.++|..|.+.+|.+
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            11111111111   11135667778999999997433  6789999999999999988

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=3e-07  Score=77.99  Aligned_cols=107  Identities=24%  Similarity=0.310  Sum_probs=91.5

Q ss_pred             CCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEe
Q 023443           41 EDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL  120 (282)
Q Consensus        41 l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  120 (282)
                      +.+.+.|++.++.|+.|.-...++.|++|.|+-|+|+.+.+  +..|++|+.|.|..|.|..+..+.-+.++++|+.|+|
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            56778899999999988766788999999999999999865  4589999999999999999887767889999999999


Q ss_pred             eCCcCC--ccCCchHHHHhhCCCCcEecCcc
Q 023443          121 LDNSIT--KKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus       121 ~~N~l~--~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      ..|+-.  .=+.++-..+.-+++|+.||--.
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~  126 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVP  126 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhccCcc
Confidence            999876  34455656788899999988554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.91  E-value=1.1e-05  Score=68.51  Aligned_cols=187  Identities=17%  Similarity=0.167  Sum_probs=104.9

Q ss_pred             CCceeEEEecCCccc-----cccccccCCCCCcEEeccCCCccc----c--------CCCCCCCccCeEeccCCcCcc-c
Q 023443           18 AIKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVK----L--------ENMPHLNRLGTLIINNNRITR-I   79 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~----i--------~~~~~l~~L~~L~L~~N~l~~-~   79 (282)
                      +..++.++||+|-|.     .+...+.+-.+|+..+++.-....    +        +.+..|+.|+..+||.|.|.. .
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            455777778877776     234445556677777766544331    1        235567777777777777654 2


Q ss_pred             CC---CcccCCccccEEeccCCcCCCCCCC------------CCCCCCCCccEEEeeCCcCCccCCchHH-HHhhCCCCc
Q 023443           80 NP---NIGEFLPKLHTLVLTNNRLVNLVEI------------DPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLR  143 (282)
Q Consensus        80 ~~---~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~  143 (282)
                      |+   ...+..+.|.+|.+++|.+..+...            .....-+.|+.+....|++..-+..-+. .+..-..|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            22   2234556677777777766543220            1122445677777777777655443111 122224566


Q ss_pred             EecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHH-----HHHHhhcccChHHH
Q 023443          144 VLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA-----IKAAIVNSQTLEEV  218 (282)
Q Consensus       144 ~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~l~~~~~L~~L  218 (282)
                      .+.+.+|.+.+..+-    .....           ..      ..+.+|++||+..|-|+.     +..+++.|+.|.+|
T Consensus       189 ~vki~qNgIrpegv~----~L~~~-----------gl------~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         189 EVKIQQNGIRPEGVT----MLAFL-----------GL------FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             eEEeeecCcCcchhH----HHHHH-----------HH------HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            666666554332110    00000           01      256788899999998873     44667888888888


Q ss_pred             HHHHHhh
Q 023443          219 ARLEKVL  225 (282)
Q Consensus       219 ~l~~N~l  225 (282)
                      .+....+
T Consensus       248 ~lnDCll  254 (388)
T COG5238         248 RLNDCLL  254 (388)
T ss_pred             cccchhh
Confidence            7554433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=3.5e-05  Score=69.90  Aligned_cols=49  Identities=14%  Similarity=0.276  Sum_probs=28.6

Q ss_pred             ceeEEEecC-CccccccccccCCCCCcEEeccCC-CccccCCCCCCCccCeEeccCCc
Q 023443           20 KERELDLRG-NKIAVIENLGATEDQFDTIDLSDN-EIVKLENMPHLNRLGTLIINNNR   75 (282)
Q Consensus        20 ~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N-~l~~i~~~~~l~~L~~L~L~~N~   75 (282)
                      +|+.|.+++ +.++.+|..+  ..+|+.|++++| .+..+|     ..|+.|+++++.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~  123 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSA  123 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEEeCCCC
Confidence            577777765 4555666544  346777777776 455554     235555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.89  E-value=2.9e-05  Score=59.10  Aligned_cols=108  Identities=18%  Similarity=0.261  Sum_probs=71.4

Q ss_pred             ccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCC
Q 023443           33 VIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL  109 (282)
Q Consensus        33 ~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  109 (282)
                      .|+ ..|..+.+|+.+.+.. .+..++  .|.++++|+.+.+..+ +..++...|.++++++.+.+.+ .+..++. ..|
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F   77 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAF   77 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccc
Confidence            355 5677888999999985 677785  7889999999999885 8999999998998999999976 6666666 588


Q ss_pred             CCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443          110 TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus       110 ~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      ..+++|+.+.+..+ +..++..   .|.++ +|+.+.+..
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~---~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSS---SFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTT---TTTT--T--EEE-TT
T ss_pred             cccccccccccCcc-ccEEchh---hhcCC-CceEEEECC
Confidence            88999999999876 7777776   45666 888887765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=1.6e-05  Score=77.32  Aligned_cols=128  Identities=20%  Similarity=0.264  Sum_probs=65.7

Q ss_pred             ceeEEEecCCccc--ccc-ccccCCCCCcEEeccCCCccccC---CCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           20 KERELDLRGNKIA--VIE-NLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        20 ~L~~L~Ls~N~l~--~ip-~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      +|++|++++...-  .-| .....+|+|+.|.+++-.+..-.   -..++++|..||+|+.+++.+ .++ +.+.+|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHHHH
Confidence            5666666664332  111 22234666666666665544321   234556666666666666655 333 356666666


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCc--h-HHHHhhCCCCcEecCcc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY--R-LYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~--~-~~~l~~l~~L~~L~ls~  149 (282)
                      .+.+=.+.....+..+.+|++|++||+|.......+..  . ...-..+|+|+.||.|+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            66655555433333455666666666666554433210  0 00112356666666666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.67  E-value=1.7e-05  Score=77.18  Aligned_cols=109  Identities=21%  Similarity=0.284  Sum_probs=75.7

Q ss_pred             CCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC--CCcccCCccccE
Q 023443           17 NAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN--PNIGEFLPKLHT   92 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~   92 (282)
                      -+|.|+.|.+++-.+.  .+.....++++|..||+|+..++.+.+++++++|+.|.+.+=.+..-.  ..+| ++++|+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~v  224 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRV  224 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCe
Confidence            3678888888877665  344555677888888888888888777788888888877665555421  2556 7888888


Q ss_pred             EeccCCcCCCCCC-----CCCCCCCCCccEEEeeCCcCC
Q 023443           93 LVLTNNRLVNLVE-----IDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        93 L~L~~N~l~~~~~-----~~~~~~l~~L~~L~L~~N~l~  126 (282)
                      ||+|.......+.     ++.-..+++|+.||.|++.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8888876554431     113345788888888877665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.49  E-value=3.4e-05  Score=64.99  Aligned_cols=105  Identities=23%  Similarity=0.261  Sum_probs=70.3

Q ss_pred             CCceeEEEecCCccccccccccCCCCCcEEeccCCCccc---cC-CCCCCCccCeEeccCCcCcccCC-CcccCCccccE
Q 023443           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK---LE-NMPHLNRLGTLIINNNRITRINP-NIGEFLPKLHT   92 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~---i~-~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~   92 (282)
                      +..|+.|++.+..++.+... -.+++|+.|.+|.|.+..   ++ -...+++|+++++++|+|..+.. .-...+.+|..
T Consensus        42 ~~~le~ls~~n~gltt~~~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeecccC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            44667777777777654432 247899999999995442   33 33456999999999999875311 11236778899


Q ss_pred             EeccCCcCCCCCCC--CCCCCCCCccEEEeeCC
Q 023443           93 LVLTNNRLVNLVEI--DPLTSLPKLQFLSLLDN  123 (282)
Q Consensus        93 L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N  123 (282)
                      |++.+|..+.+...  ..|.-+++|++|+-..-
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            99999987775431  13556778887765443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=2.2e-06  Score=73.54  Aligned_cols=191  Identities=13%  Similarity=0.097  Sum_probs=115.2

Q ss_pred             cccCHHHHhcCC--CCCCC--CceeEEEecCCccc--cccccccCCCCCcEEeccCCCcccc--CCCCCCCccCeEeccC
Q 023443            2 VRLTADLIWKSP--HFFNA--IKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINN   73 (282)
Q Consensus         2 ~~l~~~~i~~~~--~~~~l--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~L~~   73 (282)
                      .|+...++.+|.  ..+..  +.|++||||+-.|+  .+...+..|.+|+.|.+.++++..-  -.++.-.+|+.|+++.
T Consensus       164 ~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  164 FRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             EEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            355555555552  12222  35899999999998  5667778899999999999998863  2677778999999987


Q ss_pred             C-cCcccC-CCcccCCccccEEeccCCcCCCCCCCCCCCC-CCCccEEEeeCCcCC----ccCCchHHHHhhCCCCcEec
Q 023443           74 N-RITRIN-PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS-LPKLQFLSLLDNSIT----KKPNYRLYVIHKLKSLRVLD  146 (282)
Q Consensus        74 N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~----~ip~~~~~~l~~l~~L~~L~  146 (282)
                      + .++... .-++.+|+.|..|+++.+.+..-.--..+.+ -.+|..|++++..-.    .+..    ...++++|.+||
T Consensus       244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t----L~~rcp~l~~LD  319 (419)
T KOG2120|consen  244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST----LVRRCPNLVHLD  319 (419)
T ss_pred             ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH----HHHhCCceeeec
Confidence            5 455422 2346788999999999987664221001222 246788888876422    2222    356788898999


Q ss_pred             CcccHHHHHHhccChhHHHHHhhh-cccc--ccCCCCCCCcchhhcCCCeeeCCCh
Q 023443          147 FKKERMEAASLFASEEMEEEAKKE-SMKT--LMPVEVPNVSEEEEQQTPKVVAPTP  199 (282)
Q Consensus       147 ls~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~p~~~~~~~~~~~l~~L~~L~Ls~  199 (282)
                      ||++.......|........++.+ .+.|  ..|..+.   ....++.|++|+..+
T Consensus       320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~---~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL---ELNSKPSLVYLDVFG  372 (419)
T ss_pred             cccccccCchHHHHHHhcchheeeehhhhcCCChHHee---eeccCcceEEEEecc
Confidence            988443322333222222222222 1112  2333322   113566788887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=4.1e-06  Score=71.87  Aligned_cols=132  Identities=20%  Similarity=0.214  Sum_probs=85.2

Q ss_pred             CCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCCC-ccccC---CCCCCCccCeEeccCCcCcccC--CCcccCC
Q 023443           15 FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNE-IVKLE---NMPHLNRLGTLIINNNRITRIN--PNIGEFL   87 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~-l~~i~---~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l   87 (282)
                      +..|.+|+.|.|.++++. .|-..+..-.+|+.|+++.+. |+.-.   -+.+++.|..|+++++.+..-.  ..+..--
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            345778899999999888 566667777889999998865 65442   4678889999999988765411  1111112


Q ss_pred             ccccEEeccCCc--C--CCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCccc
Q 023443           88 PKLHTLVLTNNR--L--VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKE  150 (282)
Q Consensus        88 ~~L~~L~L~~N~--l--~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~  150 (282)
                      ++|..|++++.+  +  +.+.-  -...+++|.+|||++|.-  +.+..|..|.+++.|++|.++.+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~--l~~~~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVM--LKNDCFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccc--cCchHHHHHHhcchheeeehhhh
Confidence            467777777753  1  11111  234677788888877642  22244446677777777777763

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.84  E-value=0.00078  Score=34.67  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=14.8

Q ss_pred             ceeEEEecCCccccccccccC
Q 023443           20 KERELDLRGNKIAVIENLGAT   40 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~   40 (282)
                      +|++|++++|+|+.||..|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467778888877777765543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.34  E-value=7.6e-05  Score=62.12  Aligned_cols=94  Identities=18%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             cccccc-ccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCC
Q 023443           30 KIAVIE-NLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID  107 (282)
Q Consensus        30 ~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  107 (282)
                      .++.|| ..+......+.||++.|++..+. .|.-++.|..|+++.|++..+|.+.. ....+..+++..|..+..|.  
T Consensus        29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~-q~~e~~~~~~~~n~~~~~p~--  105 (326)
T KOG0473|consen   29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAK-QQRETVNAASHKNNHSQQPK--  105 (326)
T ss_pred             HhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHH-HHHHHHHHHhhccchhhCCc--
Confidence            344566 45556667777777777776665 66667777777777777777766653 56667777777777777765  


Q ss_pred             CCCCCCCccEEEeeCCcCC
Q 023443          108 PLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus       108 ~~~~l~~L~~L~L~~N~l~  126 (282)
                      +++..+.++++++-.|.|.
T Consensus       106 s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccccCCcchhhhccCcch
Confidence            7777777777777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.21  E-value=0.0022  Score=32.91  Aligned_cols=17  Identities=29%  Similarity=0.378  Sum_probs=7.5

Q ss_pred             cCeEeccCCcCcccCCC
Q 023443           66 LGTLIINNNRITRINPN   82 (282)
Q Consensus        66 L~~L~L~~N~l~~~~~~   82 (282)
                      |++|++++|+|+.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            34444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.98  E-value=0.0049  Score=29.51  Aligned_cols=16  Identities=31%  Similarity=0.557  Sum_probs=7.1

Q ss_pred             ceeEEEecCCcccccc
Q 023443           20 KERELDLRGNKIAVIE   35 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip   35 (282)
                      +|+.|++++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666665554

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.73  E-value=0.0064  Score=32.47  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=14.6

Q ss_pred             CCccCeEeccCCcCcccCCCcc
Q 023443           63 LNRLGTLIINNNRITRINPNIG   84 (282)
Q Consensus        63 l~~L~~L~L~~N~l~~~~~~~~   84 (282)
                      +++|++|+|++|+|+.+|+++|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566677777777777766665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.73  E-value=0.0064  Score=32.47  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=14.6

Q ss_pred             CCccCeEeccCCcCcccCCCcc
Q 023443           63 LNRLGTLIINNNRITRINPNIG   84 (282)
Q Consensus        63 l~~L~~L~L~~N~l~~~~~~~~   84 (282)
                      +++|++|+|++|+|+.+|+++|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566677777777777766665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.58  E-value=0.00036  Score=58.20  Aligned_cols=88  Identities=14%  Similarity=0.095  Sum_probs=78.0

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccE
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~   92 (282)
                      .+......+.||++.|++-.+-..|..++.+..||++.|+|..+| .++.+..+..+++..|.++..|-+. ...+.+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-KKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-cccCCcch
Confidence            456677899999999999988888888899999999999999998 8899999999999999999997665 58999999


Q ss_pred             EeccCCcCCC
Q 023443           93 LVLTNNRLVN  102 (282)
Q Consensus        93 L~L~~N~l~~  102 (282)
                      +++-.|.+..
T Consensus       116 ~e~k~~~~~~  125 (326)
T KOG0473|consen  116 NEQKKTEFFR  125 (326)
T ss_pred             hhhccCcchH
Confidence            9999998653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.19  E-value=0.014  Score=27.92  Aligned_cols=15  Identities=33%  Similarity=0.437  Sum_probs=5.9

Q ss_pred             CccEEEeeCCcCCcc
Q 023443          114 KLQFLSLLDNSITKK  128 (282)
Q Consensus       114 ~L~~L~L~~N~l~~i  128 (282)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            345555555554444

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.31  E-value=0.03  Score=29.76  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=14.0

Q ss_pred             CCCccEEEeeCCcCCccCCc
Q 023443          112 LPKLQFLSLLDNSITKKPNY  131 (282)
Q Consensus       112 l~~L~~L~L~~N~l~~ip~~  131 (282)
                      +++|+.|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.31  E-value=0.03  Score=29.76  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=14.0

Q ss_pred             CCCccEEEeeCCcCCccCCc
Q 023443          112 LPKLQFLSLLDNSITKKPNY  131 (282)
Q Consensus       112 l~~L~~L~L~~N~l~~ip~~  131 (282)
                      +++|+.|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777764

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=93.79  E-value=0.044  Score=51.20  Aligned_cols=87  Identities=26%  Similarity=0.358  Sum_probs=57.3

Q ss_pred             CCCccCeEeccCCcCcccCC--CcccCCccccEEeccCC--cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHH---
Q 023443           62 HLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNN--RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY---  134 (282)
Q Consensus        62 ~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~---  134 (282)
                      +.+.+..+.|++|++..+..  .+....++|..|+|++|  .+.....+..++++ .|+.|.+.+|++.+--..+-.   
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHHH
Confidence            34667778888888877643  23345688999999999  56555443344444 588999999998843322221   


Q ss_pred             -HHhhCCCCcEecCcc
Q 023443          135 -VIHKLKSLRVLDFKK  149 (282)
Q Consensus       135 -~l~~l~~L~~L~ls~  149 (282)
                       .-..+|+|..||-..
T Consensus       295 ~i~~~FPKL~~LDG~e  310 (585)
T KOG3763|consen  295 AIRELFPKLLRLDGVE  310 (585)
T ss_pred             HHHHhcchheeecCcc
Confidence             234678888887554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.26  E-value=0.0009  Score=62.57  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             CCCeeeCCChhHHH-----HHHHHhhcccChHHHHHHHHhh
Q 023443          190 QTPKVVAPTPEQII-----AIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       190 ~~L~~L~Ls~N~l~-----~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      ..+++++++.|.|+     .+...+..|+.++++.+..|.+
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            35678888888876     3667788888999998888876

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=91.03  E-value=0.22  Score=26.61  Aligned_cols=17  Identities=41%  Similarity=0.722  Sum_probs=8.5

Q ss_pred             CCCcEEeccCCCccccC
Q 023443           42 DQFDTIDLSDNEIVKLE   58 (282)
Q Consensus        42 ~~L~~L~Ls~N~l~~i~   58 (282)
                      .+|+.|+|++|.|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            34555555555554443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.63  E-value=0.54  Score=25.07  Aligned_cols=17  Identities=41%  Similarity=0.579  Sum_probs=10.1

Q ss_pred             cccEEeccCCcCCCCCC
Q 023443           89 KLHTLVLTNNRLVNLVE  105 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~~~  105 (282)
                      +|++|++++|+++.+|.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45566666666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.21  E-value=0.67  Score=23.87  Aligned_cols=14  Identities=43%  Similarity=0.776  Sum_probs=5.7

Q ss_pred             CCCcEEeccCCCcc
Q 023443           42 DQFDTIDLSDNEIV   55 (282)
Q Consensus        42 ~~L~~L~Ls~N~l~   55 (282)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34445555555443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.86  E-value=0.13  Score=42.14  Aligned_cols=81  Identities=25%  Similarity=0.260  Sum_probs=42.5

Q ss_pred             ccCeEeccCCcCcccCCCcccCCccccEEeccCCc-CCCCCCCCCCC-CCCCccEEEeeCCc-CCccCCchHHHHhhCCC
Q 023443           65 RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR-LVNLVEIDPLT-SLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKS  141 (282)
Q Consensus        65 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~  141 (282)
                      .++.++-++..|..+.-.-+.+++.++.|.+.++. +.... +.-++ ..++|+.|++++|+ |+   ......+..+++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT---~~GL~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRIT---DGGLACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeec---hhHHHHHHHhhh
Confidence            34555555555555433333455555555555553 11110 01111 24677888887664 44   333336777777


Q ss_pred             CcEecCcc
Q 023443          142 LRVLDFKK  149 (282)
Q Consensus       142 L~~L~ls~  149 (282)
                      |+.|.+.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            77777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
1a9n_A	176	Crystal Structure Of The Spliceosomal U2b''-U2a' Pr		4e-28

>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein Complex Bound To A Fragment Of U2 Small Nuclear Rna Length = 176

Iteration: 1
 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 86/149 (57%)
Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61  PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
           P                       + LP                ++DPL SL  L +L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
           L N +T K +YRLYVI+K+  +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	4e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-04

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score =  183 bits (467), Expect = 2e-58
 Identities = 93/177 (52%), Positives = 122/177 (68%), Gaps = 5/177 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLFASEEMEEEAKKESMK 173
           L N +T K +YRLYVI+K+  +RVLDF+    KER EA  +F  +    +  K+  +
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKR-GAQLAKDIAR 176

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score =  147 bits (373), Expect = 2e-44
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 3   RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPH 62
           R+  +L  ++P    A++E  LD   +    IE L A     + + L +  ++ + N+P 
Sbjct: 13  RIHLELRNRTP---AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK 69

Query: 63  LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122
           L +L  L ++ NRI      + E LP L  L L+ N+L ++  ++PL  L  L+ L L +
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 123 NSITKKPNYRLYVIHKLKSLRVLDFK----KERMEA 154
             +T   +YR  V   L  L  LD      +E  ++
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score =  144 bits (366), Expect = 1e-43
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 3   RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPH 62
           R+  +L  ++P   + +KE  LD   +    +E L    ++ + +   +  +  + N+P 
Sbjct: 6   RIHLELRNRTP---SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK 62

Query: 63  LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122
           LN+L  L +++NR++     + E  P L  L L+ N++ +L  I+PL  L  L+ L L +
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 123 NSITKKPNYRLYVIHKLKSLRVLD 146
             +T   +YR  V   L  L  LD
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYLD 146

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 94.8 bits (235), Expect = 3e-22
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 16  FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNN 74
                 R L L    + V+ +L         +DLS N +  L   +  L  L  L  ++N
Sbjct: 438 MEYADVRVLHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
            +  +   +   LP+L  L+L NNRL     I PL S P+L  L+L  NS+ ++   +  
Sbjct: 497 ALENV-DGVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554

Query: 135 VIHKLKSLRVLD 146
           +   L S+  + 
Sbjct: 555 LAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 9e-07
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 29  NKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLP 88
              + ++ +      +     S   +           +  L + +  +T +  ++ E L 
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHL-EQLL 463

Query: 89  KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            +  L L++NRL  L     L +L  L+ L   DN++          +  L  L+ L 
Sbjct: 464 LVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVDG-----VANLPRLQELL 514

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 35/149 (23%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           R L L  N I  IENL A  D  + + +S N+I  L  +                     
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEK------------------- 113

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK-------PNYRLY 134
                L  L  L ++NN++ N  EID L +L KL+ L L  N +            YR+ 
Sbjct: 114 -----LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168

Query: 135 VIHKLKSLRVLD----FKKERMEAASLFA 159
           V+ +L +L+ LD       ER +A     
Sbjct: 169 VVKRLPNLKKLDGMPVDVDEREQANVARG 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            EL +  N++  +  + +       + L +NE+   +++ HL  L  L I NN++  I  
Sbjct: 88  EELSVNRNRLKNLNGIPSA--CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM 145

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
               FL KL  L L  N + N      LT L K+ ++ L       +P      ++   +
Sbjct: 146 L--GFLSKLEVLDLHGNEITN---TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 142 LRVLD 146
           ++  D
Sbjct: 201 VKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           +  +   + I  +  +         + LS N+I  L  +  L +L  L +N NR+  +N 
Sbjct: 44  QNFNGDNSNIQSLAGMQFFT-NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG 102

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                   L  L L NN L +    D L  L  L+ LS+ +N +       + ++  L  
Sbjct: 103 ---IPSACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKS-----IVMLGFLSK 151

Query: 142 LRVLD 146
           L VLD
Sbjct: 152 LEVLD 156

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L +R NK+  I  LG    + + +DL  NEI     +  L ++  + +   +      
Sbjct: 131 EILSIRNNKLKSIVMLGFL-SKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPV 189

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEI 106
                L   +T+   + R ++   I
Sbjct: 190 KYQPELYITNTVKDPDGRWISPYYI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.3 bits (200), Expect = 2e-17
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + L L  N I+ I  L     Q +++ L +N+I  +  +  L +L TL + +N+I+ I P
Sbjct: 112 KSLSLEHNGISDINGLVHL-PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 170

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
             G  L KL  L L+ N + +   +  L  L  L  L L       KP      +    +
Sbjct: 171 LAG--LTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 142 LRVLD 146
           ++  D
Sbjct: 226 VKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 3e-15
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 20  KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           +  + +L+   +          +  D I  ++++I  ++ + +L  +  L +N N++T I
Sbjct: 22  ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI 80

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            P     L  L  L L  N++ +   +  L  L KL+ LSL  N I+         +  L
Sbjct: 81  KPL--TNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEHNGISDING-----LVHL 130

Query: 140 KSLRVLD 146
             L  L 
Sbjct: 131 PQLESLY 137

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 11/125 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            E       I  I    A   +    +L    +        LN +  +I NN+ I  +  
Sbjct: 2   GETITVSTPIKQIFPDDAFA-ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
              ++LP +  L L  N+L +   I PLT+L  L +L L +N I    +     +  LK 
Sbjct: 61  I--QYLPNVTKLFLNGNKLTD---IKPLTNLKNLGWLFLDENKIKDLSS-----LKDLKK 110

Query: 142 LRVLD 146
           L+ L 
Sbjct: 111 LKSLS 115

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 49  LSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108
                I ++             +    +T         L  +  ++  N+   ++  +  
Sbjct: 6   TVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNS---DIKSVQG 60

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
           +  LP +  L L  N +T      +  +  LK+L  L   +
Sbjct: 61  IQYLPNVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDE 96

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L L  N+I+ I  L A   +   + LS N I  L  +  L  L  L + +        
Sbjct: 156 DTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           N    L   +T+  T+  LV    I       K      L     + 
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           +G  I  +  I +I P+  +   +     L      ++ +      L  +  +   ++ I
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDI 55

Query: 126 TKKPNYRLYVIHKLKSLRVLDF 147
                     I  L ++  L  
Sbjct: 56  KSVQG-----IQYLPNVTKLFL 72

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 8e-17
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP----HLNRLGTLII 71
             L+L  NK+  + +       FD       + LS N +               L  L +
Sbjct: 31  TRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           + N +  ++ N    L +L  L   ++ L  + E     SL  L +L +         N 
Sbjct: 86  SFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 132 RLYVIHKLKSLRVLD 146
                + L SL VL 
Sbjct: 145 IF---NGLSSLEVLK 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP---HLNRLGT 68
           S   F     + LDL  N +  + +     +Q + +D   + + ++        L  L  
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 69  LIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           L I++         I   L  L  L +  N        D  T L  L FL L    + + 
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 129 PNYRLYVIHKLKSLRVLD 146
                   + L SL+VL+
Sbjct: 191 SP---TAFNSLSSLQVLN 205

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDN---EIVKLENMPHLNRLGTLIIN 72
             LD+      V  N       F+       + ++ N   E    +    L  L  L ++
Sbjct: 129 IYLDISHTHTRVAFN-----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
             ++ +++P     L  L  L +++N   +L +  P   L  LQ L    N I       
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 133 LYVIHKLKSLRVLD 146
           L   H   SL  L+
Sbjct: 243 LQ--HFPSSLAFLN 254

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 45  DTIDLSDNEIVKLENMPH--LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
             I  +      L ++P    +    L + +N++  +   + + L +L  L L++N L +
Sbjct: 10  TEIRCNSK---GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-S 65

Query: 103 LVEIDPLT--SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK---ERMEAASL 157
                  +      L++L L  N +    +        L+ L  LDF+    ++M   S+
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 158 FAS 160
           F S
Sbjct: 122 FLS 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + L L  N I+ I  L     Q +++ L +N+I  +  +  L +L TL + +N+I+ I P
Sbjct: 115 KSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 173

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L KL  L L+ N   ++ ++  L  L  L  L L       KP      +    +
Sbjct: 174 --LAGLTKLQNLYLSKN---HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 142 LRVLD 146
           ++  D
Sbjct: 229 VKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 20  KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           +  + +L+   +          +  D I  ++++I  ++ + +L  +  L +N N++T I
Sbjct: 25  ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI 83

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            P     L  L  L L  N++ +   +  L  L KL+ LSL  N I+         +  L
Sbjct: 84  KPL--ANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGISDING-----LVHL 133

Query: 140 KSLRVLD 146
             L  L 
Sbjct: 134 PQLESLY 140

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 49  LSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108
                I ++ +           +    +T         L  +  ++  N+   ++  +  
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNS---DIKSVQG 63

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           +  LP +  L L  N +T      +  +  LK+L  L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTD-----IKPLANLKNLGWLFL 97

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 1/107 (0%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L L  N+I+ I  L     +   + LS N I  L  +  L  L  L + +        
Sbjct: 159 DTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 217

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           N    L   +T+  T+  LV    I       K      L     + 
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLENMPH----LNRLGTLIINNNR 75
             L ++GN   +    G  E+      +DLS ++I   +        L+ L +L ++ N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
              +     +  P+L  L L   RL       P  +L  L+ L+L  + +         +
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE---QL 444

Query: 136 IHKLKSLRVLD 146
              L +L+ L+
Sbjct: 445 FDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN-MPHLNRLGTLIINNN 74
             ++L+ +    I       + F        +DL+   + +L + +  L+ L  L+++ N
Sbjct: 257 ESINLQKHYFFNIS-----SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
           +   +        P L  L +  N     +    L +L  L+ L L  + I       L 
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL- 370

Query: 135 VIHKLKSLRVLDF 147
            +  L  L+ L+ 
Sbjct: 371 QLRNLSHLQSLNL 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             L+   N +  I+N       F        +DL+  +I  +        +RL TL++  
Sbjct: 36  ECLEFSFNVLPTIQN-----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +  +          L  L      + ++    PL +   L+ L L  N I+      L
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIK---L 146

Query: 134 YVIHKLKSLRVLDF 147
                 + L+VLDF
Sbjct: 147 PKGFPTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HLNRLGTLI 70
           + L+L  + + +          FD       ++L  N   K           L RL  L+
Sbjct: 428 KVLNLSHSLLDISSE-----QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
           ++   ++ I+ +    L  ++ + L++NRL +    + L+ L  +  L+L  N I+    
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGIY-LNLASNHISIIL- 539

Query: 131 YRLYVIHKLKSLRVLD 146
               ++  L   R ++
Sbjct: 540 --PSLLPILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 19/148 (12%)

Query: 12  SPHFFNAIKE-RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLE-----NM 60
                +  K    L L  N I+ I+          +     +D  +N I  L      ++
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK----VLDFQNNAIHYLSKEDMSSL 176

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLS 119
                L +L +N N I  I P   +      +L     + L+ + +    +++  L   +
Sbjct: 177 QQATNL-SLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 120 LLDNSITKKPNYRLYVIHKLKSLRVLDF 147
             D             + ++ S+  ++ 
Sbjct: 235 FEDMDDEDISPAVFEGLCEM-SVESINL 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 35/167 (20%)

Query: 11  KSPHFFNAIKERELDLRGNKIAVIENL---GATEDQFDTIDLSDNEIVKLE-NMPHLNRL 66
           K P  F   K + LD + N I  +         +    +++L+ N+I  +E         
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 67  GTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNL--------------------- 103
            +L     +   +     +   +  L      +    ++                     
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 104 ----VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
               +  +       LQ L L    +++ P+     +  L +L+ L 
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSG----LVGLSTLKKLV 307

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 34/149 (22%)

Query: 6   ADLIWKSPHFFNAIKE-RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL- 57
                +  +    +     L L    ++ I      +  F        +DLS N +    
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSI-----DQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 58  -ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL---------------- 100
            E + HL  +  L + +N I+ I P++   L +  T+ L  N L                
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKEN 575

Query: 101 -VNLVEIDPLT--SLPKLQFLSLLDNSIT 126
              L + +     + P L+ + L D +++
Sbjct: 576 MQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 16/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + LDL  N +  + +       F        +DLS  EI  +E+     L+ L TLI+  
Sbjct: 31  KNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I  +       L  L  LV     L +L E  P+  L  L+ L++  N I        
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPE- 143

Query: 134 YVIHKLKSLRVLD 146
                L +L  LD
Sbjct: 144 -YFSNLTNLEHLD 155

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 19/133 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HLNRLGTLI 70
           + LDL   +I  IE     +  +       T+ L+ N    ++++       L+ L  L+
Sbjct: 55  QVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLV 106

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
                +  +       L  L  L + +N + +    +  ++L  L+ L L  N I     
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 131 YRLYVIHKLKSLR 143
             L V+H++  L 
Sbjct: 167 TDLRVLHQMPLLN 179

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLE-----NMPHLNRLG-TL 69
           +EL++  N I   +        F        +DLS N+I  +       +  +  L  +L
Sbjct: 127 KELNVAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 70  IINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
            ++ N +  I P   + + +L  L L  N+L ++ +      L  LQ + L  N
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 27/140 (19%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLENM---PHLNRLGTLIINN 73
           ++L      +A +E     +L   +     ++++ N I   +      +L  L  L +++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLK----ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP-------KLQFLSLLDNSIT 126
           N+I  I       L ++  L L+ +  +N     P+  +        +L+ L+L  N + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLN-----PMNFIQPGAFKEIRLKELALDTNQLK 213

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
             P+    +  +L SL+ + 
Sbjct: 214 SVPD---GIFDRLTSLQKIW 230

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 20/134 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             L L  N I  IE  GA    F+      T++L DN +  + N    +L++L  L + N
Sbjct: 91  EILQLSRNHIRTIEI-GA----FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 74  NRITRINPNIGEFLPKLHTLVLT-NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           N I  I       +P L  L L    RL  +        L  L++L+L   ++ + PN  
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNLREIPN-- 202

Query: 133 LYVIHKLKSLRVLD 146
              +  L  L  LD
Sbjct: 203 ---LTPLIKLDELD 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 9e-16
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 16/133 (12%)

Query: 22  RELDL-RGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNN 74
           R LDL    +++ I      E  F+       ++L+   + ++ N+  L +L  L ++ N
Sbjct: 163 RRLDLGELKRLSYIS-----EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
            ++ I P   + L  L  L +  +++   +E +   +L  L  ++L  N++T  P+    
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPH---D 273

Query: 135 VIHKLKSLRVLDF 147
           +   L  L  +  
Sbjct: 274 LFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 20/141 (14%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSD-NEIVKLENM--PHLNR 65
           F    K +EL LR N I  I         F+       +DL +   +  +       L+ 
Sbjct: 132 FVYLSKLKELWLRNNPIESIP-----SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           L  L +    +  I       L KL  L L+ N L  +        L  LQ L ++ + I
Sbjct: 187 LRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQI 243

Query: 126 TKKPNYRLYVIHKLKSLRVLD 146
                        L+SL  ++
Sbjct: 244 QVIER---NAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRI 79
           R L+L    +  I NL     + D +DLS N +  +       L  L  L +  ++I  I
Sbjct: 188 RYLNLAMCNLREIPNLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
             N  + L  L  + L +N L  L   D  T L  L+ + L  N  
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 4e-12
 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 25/125 (20%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           R L+L  N+I +I+      + F                 HL  L  L ++ N I  I  
Sbjct: 67  RLLNLHENQIQIIK-----VNSFK----------------HLRHLEILQLSRNHIRTIEI 105

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L  L+TL L +NRL  +        L KL+ L L +N I   P+   Y  +++ S
Sbjct: 106 GAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPS---YAFNRIPS 161

Query: 142 LRVLD 146
           LR LD
Sbjct: 162 LRRLD 166

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLN 64
           P+    IK  ELDL GN ++ I         F        + +  ++I  +E     +L 
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIR-----PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98
            L  + + +N +T +  ++   L  L  + L +N
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 5e-16
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 20/134 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             L L  N I  IE  GA    F+      T++L DN +  + +    +L++L  L + N
Sbjct: 102 EVLQLGRNSIRQIEV-GA----FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 74  NRITRINPNIGEFLPKLHTLVLT-NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           N I  I       +P L  L L    +L  +        L  L++L+L   +I   PN  
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIKDMPNLT 215

Query: 133 LYVIHKLKSLRVLD 146
                 L  L  L+
Sbjct: 216 -----PLVGLEELE 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 16/133 (12%)

Query: 22  RELDL-RGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNN 74
             LDL    K+  I      E  F+       ++L    I  + N+  L  L  L ++ N
Sbjct: 174 MRLDLGELKKLEYIS-----EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
               I P     L  L  L + N+++   +E +    L  L  L+L  N+++  P+    
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPH---D 284

Query: 135 VIHKLKSLRVLDF 147
           +   L+ L  L  
Sbjct: 285 LFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRI 79
           + L+L    I  + NL       + +++S N   ++       L+ L  L + N++++ I
Sbjct: 199 KYLNLGMCNIKDMPNLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
             N  + L  L  L L +N L +L   D  T L  L  L L  N  
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.7 bits (163), Expect = 9e-13
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSD-NEIVKLENM--PHLNR 65
           F    K REL LR N I  I         F+       +DL +  ++  +       L  
Sbjct: 143 FEYLSKLRELWLRNNPIESIP-----SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           L  L +    I  +       L  L  L ++ N    +        L  L+ L ++++ +
Sbjct: 198 LKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQV 254

Query: 126 TKKPNYRLYVIHKLKSLRVLD 146
           +            L SL  L+
Sbjct: 255 SLIER---NAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 29/127 (22%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           R L+L  N I +I+      D F                 HL+ L  L +  N I +I  
Sbjct: 78  RYLNLMENNIQMIQ-----ADTFR----------------HLHHLEVLQLGRNSIRQIEV 116

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
                L  L+TL L +N    L  I       L KL+ L L +N I   P+   Y  +++
Sbjct: 117 GAFNGLASLNTLELFDNW---LTVIPSGAFEYLSKLRELWLRNNPIESIPS---YAFNRV 170

Query: 140 KSLRVLD 146
            SL  LD
Sbjct: 171 PSLMRLD 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLN 64
           P+    +   EL++ GN    I         F        + + ++++  +E      L 
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-----PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98
            L  L + +N ++ +  ++   L  L  L L +N
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 17/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           R LDL  N+I  +      +D+F        ++L++N +  +E     +L  L TL + +
Sbjct: 35  RLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           NR+  I   +   L  L  L ++ N++V L        L  L+ L + DN +    +   
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISH--- 145

Query: 134 YVIHKLKSLRVLD 146
                L SL  L 
Sbjct: 146 RAFSGLNSLEQLT 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HL 63
           +P+    +    L +    +  +                  ++LS N I  +E      L
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVP-----YLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 64  NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
            RL  + +   ++  + P     L  L  L ++ N+L  L E     S+  L+ L L  N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSN 330

Query: 124 SI 125
            +
Sbjct: 331 PL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 14/145 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           R L LR N++ +I         F        +D+S+N+IV L +     L  L +L + +
Sbjct: 83  RTLGLRSNRLKLIP-----LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +  I+      L  L  L L    L ++   + L+ L  L  L L   +I    +Y  
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 134 YVIHKLKSLRVLDFKKERMEAASLF 158
             +++LK L +  +        +  
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCL 221

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
            +LD+  NKI ++ +       F       ++++ DN++V + +     LN L  L +  
Sbjct: 107 TKLDISENKIVILLD-----YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
             +T I       L  L  L L +  +  +        L +L+ L +             
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 134 YVIHKLKSLR 143
                L SL 
Sbjct: 221 LYGLNLTSLS 230

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 14  HFFNAIKERELDLRGNKIAVIENLGATED-QFDTIDLSDNEIVKLENM--PHLNRLGTLI 70
            F    + + L++                    ++ ++   +  +  +   HL  L  L 
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
           ++ N I+ I  ++   L +L  + L   +L  + E      L  L+ L++  N +T    
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTLEE 313

Query: 131 YRLYVIHKLKSLRVLDF 147
               V H + +L  L  
Sbjct: 314 ---SVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 16/131 (12%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNN 74
            +L L    +  I      +L         + L    I  + +     L RL  L I++ 
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLI----VLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYR 132
                      +   L +L +T+    NL  +    +  L  L+FL+L  N I+      
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHC---NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

Query: 133 LYVIHKLKSLR 143
           L+ + +L+ ++
Sbjct: 268 LHELLRLQEIQ 278

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           R L+L  N I+ IE                 I L   ++  +E      LN L  L ++ 
Sbjct: 251 RFLNLSYNPISTIEG-----SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLV 101
           N++T +  ++   +  L TL+L +N L 
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPLA 333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             L L  N +  I +  A    F        +DLS N +  L+      L  L  L++ N
Sbjct: 67  HSLLLSHNHLNFISS-EA----FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVE--IDPLTSLPKLQFLSLLDNSITKKPNY 131
           N I  ++ N  E + +L  L L+ N++       I     LPKL  L L  N + K P  
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 132 RLYVIHKLKSLRV 144
            L  +       +
Sbjct: 182 DLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             LDL  N ++ +                 ++ LS N +  + +     +  L  L +++
Sbjct: 42  ALLDLSHNNLSRLRAEWT----PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +  ++  +   L  L  L+L NN +V + + +    + +LQ L L  N I++ P   +
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 134 YVIHKLKSLRVLD 146
              +KL  L +LD
Sbjct: 157 KDGNKLPKLMLLD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 11/125 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L L  N+I  I  L +            N+I  +  + ++ RL +L I NN+IT ++P
Sbjct: 180 YSLSLNYNQIEDISPLASLT-SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP 238

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            +   L +L  L +  N++ +   I+ +  L KL+ L++  N I+         ++ L  
Sbjct: 239 -LAN-LSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQISDISV-----LNNLSQ 288

Query: 142 LRVLD 146
           L  L 
Sbjct: 289 LNSLF 293

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.0 bits (180), Expect = 6e-15
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
                  N+I  I  +     + +++ + +N+I  L  + +L++L  L I  N+I+ I  
Sbjct: 202 HYFTAYVNQITDITPVANMT-RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-N 259

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            + + L KL  L + +N++ +   I  L +L +L  L L +N +  +    + VI  L +
Sbjct: 260 AVKD-LTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNED---MEVIGGLTN 312

Query: 142 LRVLDF 147
           L  L  
Sbjct: 313 LTTLFL 318

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.6 bits (179), Expect = 8e-15
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L +  NKI  I  L         + L+++ I  +  + +L ++ +L +  N       
Sbjct: 91  TNLYIGTNKITDISALQNLT-NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            +   +  L+ L +T +++ +   + P+ +L  L  LSL  N I          +  L S
Sbjct: 150 PLSN-MTGLNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIEDISP-----LASLTS 200

Query: 142 LRVLD 146
           L    
Sbjct: 201 LHYFT 205

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L +  NKI  +  L     Q   +++  N+I  +  +  L +L  L + +N+I+ I  
Sbjct: 224 NSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-S 281

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            +   L +L++L L NN+L N  +++ +  L  L  L L  N IT         +  L  
Sbjct: 282 VLNN-LSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSK 334

Query: 142 LRVLDF 147
           +   DF
Sbjct: 335 MDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 20  KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           +     L+   +  +      E     + ++  ++  ++ + +L  L  L +N N+IT I
Sbjct: 23  EGIRAVLQKASVTDVVTQEELE-SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDI 81

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
           +P     L KL  L +  N++ +   I  L +L  L+ L L +++I+         +  L
Sbjct: 82  SPL--SNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDISP-----LANL 131

Query: 140 KSLRVLD 146
             +  L+
Sbjct: 132 TKMYSLN 138

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 4e-14
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L++  N+I+ I  +     +   +++  N+I  +  + +L++L +L +NNN++   + 
Sbjct: 246 TWLEIGTNQISDINAVKDLT-KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            +   L  L TL L+ N + +   I PL SL K+      +  I K
Sbjct: 305 EVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 8e-14
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 23  ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82
            L      I  I        +     L    +  +     L  +  L++   ++  I   
Sbjct: 4   TLATLPAPINQIFPDADLA-EGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGI 62

Query: 83  IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL 142
             E+L  L  L L  N++ +   I PL++L KL  L +  N IT         +  L +L
Sbjct: 63  --EYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITDISA-----LQNLTNL 112

Query: 143 RVLDF 147
           R L  
Sbjct: 113 RELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 22  RELDLRGNK----IAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRIT 77
             L+L  N     ++ + N+         + ++++++  +  + +L  L +L +N N+I 
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLN----YLTVTESKVKDVTPIANLTDLYSLSLNYNQIE 190

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH 137
            I   +   L  LH      N++ +   I P+ ++ +L  L + +N IT         + 
Sbjct: 191 DI-SPLAS-LTSLHYFTAYVNQITD---ITPVANMTRLNSLKIGNNKITDLSP-----LA 240

Query: 138 KLKSLRVLD 146
            L  L  L+
Sbjct: 241 NLSQLTWLE 249

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 39/143 (27%), Positives = 52/143 (36%), Gaps = 22/143 (15%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HL 63
           F        L L  N +A I+   A    F        +DLSDN   +L ++       L
Sbjct: 52  FRACRNLTILWLHSNVLARIDA-AA----FTGLALLEQLDLSDNA--QLRSVDPATFHGL 104

Query: 64  NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
            RL TL ++   +  + P +   L  L  L L +N L  L   D    L  L  L L  N
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGN 163

Query: 124 SITKKPNYRLYVIHKLKSLRVLD 146
            I+  P         L SL  L 
Sbjct: 164 RISSVPE---RAFRGLHSLDRLL 183

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             L L    +  +         F        + L DN +  L +     L  L  L ++ 
Sbjct: 108 HTLHLDRCGLQELG-----PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           NRI+ +       L  L  L+L  NR+ ++        L +L  L L  N+++  P    
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPT--- 218

Query: 134 YVIHKLKSLRVLDF 147
             +  L++L+ L  
Sbjct: 219 EALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 14/110 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + L L+ N +  +      +D F        + L  N I  +       L+ L  L+++ 
Sbjct: 132 QYLYLQDNALQALP-----DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           NR+  ++P+    L +L TL L  N L  L   + L  L  LQ+L L DN
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 46  TIDLSDNEIVKLENM--PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            I L  N I  +          L  L +++N + RI+      L  L  L L++N  +  
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           V+      L +L  L L    + +       +   L +L+ L 
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGP---GLFRGLAALQYLY 135

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            EL+L GN +  +  + A      T+DL+  +I  +  +  L+ L  L ++ N+IT I+P
Sbjct: 88  TELELSGNPLKNVSAI-AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 146

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L  L  L + N ++ +   + PL +L KL  L   DN I+      +  +  L +
Sbjct: 147 L--AGLTNLQYLSIGNAQVSD---LTPLANLSKLTTLKADDNKISD-----ISPLASLPN 196

Query: 142 LRVLDF 147
           L  +  
Sbjct: 197 LIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.4 bits (178), Expect = 7e-15
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L   G  +  IE +         ++L DN+I  L  + +L ++  L ++ N +  ++ 
Sbjct: 44  TTLSAFGTGVTTIEGVQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
             G  L  + TL LT+ ++ +   + PL  L  LQ L L  N IT         +  L +
Sbjct: 103 IAG--LQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNISP-----LAGLTN 152

Query: 142 LRVLDF 147
           L+ L  
Sbjct: 153 LQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + L L  N+I  I  L         + + + ++  L  + +L++L TL  ++N+I+ I+P
Sbjct: 132 QVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                LP L  + L NN++ +   + PL +   L  ++L + +IT +P +    +     
Sbjct: 191 LAS--LPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 142 LRVLD 146
           ++   
Sbjct: 246 VKGPS 250

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 29  NKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLP 88
             I VI    A       I    + +        L+ + TL      +T I     ++L 
Sbjct: 7   TAINVIFPDPALA-NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGV--QYLN 63

Query: 89  KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
            L  L L +N++ +   + PL +L K+  L L  N +          I  L+S++ LD 
Sbjct: 64  NLIGLELKDNQITD---LAPLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDL 114

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 10/99 (10%)

Query: 49  LSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108
                I  +   P L     +    + +T         L  + TL      +     I+ 
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT---IEG 58

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           +  L  L  L L DN IT         +  L  +  L+ 
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP-----LKNLTKITELEL 92

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L    NKI+ I  L +       + L +N+I  +  + + + L  + + N  IT    
Sbjct: 176 TTLKADDNKISDISPLASLP-NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
               +   L    +        +    ++        +L  N  +   N
Sbjct: 235 F---YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 8e-15
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            ELD   N I V+        +   + L  N +     + +   L  + ++ N + +I  
Sbjct: 208 EELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           +    + +L  L ++NNRLV L        +P L+ L L  N +            +   
Sbjct: 266 HPFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNHLLHVER----NQPQFDR 319

Query: 142 LRVLD 146
           L  L 
Sbjct: 320 LENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 20/133 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             L+L   +I  I+        F        + +  N I  L      ++  L  L++  
Sbjct: 72  ELLNLNDLQIEEID-----TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N ++ +   I    PKL TL ++NN L  + E D   +   LQ L L  N +T       
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVD---- 181

Query: 134 YVIHKLKSLRVLD 146
             +  + SL   +
Sbjct: 182 --LSLIPSLFHAN 192

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 17/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + +  + + +  +          D       ++L+D +I +++     + + +  L +  
Sbjct: 48  KIVTFKNSTMRKLP-----AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I  + P++ + +P L  LVL  N L +L       + PKL  LS+ +N++ +  +   
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIED--- 158

Query: 134 YVIHKLKSLRVLD 146
                  SL+ L 
Sbjct: 159 DTFQATTSLQNLQ 171

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLENMPHLNRLGTLIINNNRITR 78
           + L L  N++  ++               ++S N +  L     +     L  ++N I  
Sbjct: 168 QNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAIPIAVE---ELDASHNSINV 219

Query: 79  INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
           +   +     +L  L L +N    L +   L + P L  + L  N + K   +      K
Sbjct: 220 VRGPV---NVELTILKLQHNN---LTDTAWLLNYPGLVEVDLSYNELEKIMYHPF---VK 270

Query: 139 LKSLRVLD 146
           ++ L  L 
Sbjct: 271 MQRLERLY 278

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRIN 80
             L +  N++  +   G        +DLS N ++ +E N P  +RL  L +++N I  + 
Sbjct: 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPK-LQFLSLLDNSITKKPNYRL 133
            +       L  L L++N        + L +L + +   ++ D     K +Y+L
Sbjct: 335 LST---HHTLKNLTLSHNDWDC----NSLRALFRNVARPAVDDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 47  IDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEI 106
           ID+   ++        LN    +   N+ + ++   + +   ++  L L + ++  + + 
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DT 86

Query: 107 DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                   +Q L +  N+I   P    +V   +  L VL 
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLV 123

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 59  NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
           N+ +      + I+              L     +   N+ +  L     L S  +++ L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELL 74

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           +L D  I +      Y      +++ L 
Sbjct: 75  NLNDLQIEEIDT---YAFAYAHTIQKLY 99

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 8e-15
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + LDL  N +  + +       F        +DLS  EI  +E+     L+ L TLI+  
Sbjct: 31  KNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I  +       L  L  LV     L +L E  P+  L  L+ L++  N I        
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFK--LP 142

Query: 134 YVIHKLKSLRVLDF 147
                L +L  LD 
Sbjct: 143 EYFSNLTNLEHLDL 156

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 11  KSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM---PHLNRLG 67
            S   F     + LDL  N +  + +     +Q + +D   + + ++        L  L 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 68  TLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            L I++         I   L  L  L +  N        D  T L  L FL L    + +
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 128 KPNYRLYVIHKLKSLRVLD 146
                    + L SL+VL+
Sbjct: 485 LSP---TAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 10/149 (6%)

Query: 4   LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKL-EN 59
            T++    +    +      LDL  N ++       ++        +DLS N ++ +  N
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 60  MPHLNRLGTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117
              L +L  L   ++ + ++      F  L  L  L +++              L  L+ 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEV 449

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L +  NS  +       +  +L++L  LD
Sbjct: 450 LKMAGNSFQENFLPD--IFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHL 63
           S +F    +   LD + + +  +         F        +D+S        N     L
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 64  NRLGTLIINNNRITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122
           + L  L +  N       P+I   L  L  L L+  +L  L       SL  LQ L++  
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMAS 503

Query: 123 NSITKKPNYRLYVIHKLKSLRVLD 146
           N +   P+    +  +L SL+ + 
Sbjct: 504 NQLKSVPD---GIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 8/140 (5%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I +   F      + L+L   K      L         +  + N+     +   L  L  
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 69  LIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           L ++ N ++              L  L L+ N ++ +        L +L+ L    +++ 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLK 409

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
           +   +   V   L++L  LD
Sbjct: 410 QMSEF--SVFLSLRNLIYLD 427

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
           + LDL   +I  IE     +  +       T+ L+ N I  L       L+ L  L+   
Sbjct: 55  QVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
             +  +       L  L  L + +N + +    +  ++L  L+ L L  N I       L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 134 YVIHKLKSLRV 144
            V+H++  L +
Sbjct: 170 RVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 15/113 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL---ENMPHLNRLGTLIIN 72
             LD+      V  N       F+       + ++ N   +    +    L  L  L ++
Sbjct: 424 IYLDISHTHTRVAFN-----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
             ++ +++P     L  L  L + +N+L ++        L  LQ + L  N  
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLE-----NMPHLNRLG-TLIINN 73
           +EL++  N I   +      +    + +DLS N+I  +       +  +  L  +L ++ 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +  I P   + + +LH L L NN     V    +  L  L+   L+      + N   
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 134 YVIHKLKSLRVLDFKKERMEAASLFASE 161
           +    L+ L  L  ++ R+     +  +
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDD 273

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 22/138 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL---ENMPHLNRLGTLIIN 72
           ++L      +A +EN                ++++ N I      E   +L  L  L ++
Sbjct: 103 QKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 73  NNRITRINPNIGEFLPKLH----TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           +N+I  I       L ++     +L L+ N + N ++      + +L  L+L +N  +  
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEI-RLHKLTLRNNFDS-- 213

Query: 129 PNYRLYVIHKLKSLRVLD 146
            N     I  L  L V  
Sbjct: 214 LNVMKTCIQGLAGLEVHR 231

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 11/137 (8%)

Query: 14  HFFNAIKERELDLRGNKIAVIENLGATEDQF----DTIDLSDNEIVKLENMPHLNRLGTL 69
                      + R   +    +             +  L    I ++++  +      L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 70  IINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP 129
            + N +  +        L  L  L  T+N+  N         LP L+FL L  N ++ K 
Sbjct: 310 ELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 130 NYRLYVIHKLKSLRVLD 146
                      SL+ LD
Sbjct: 364 CCSQ-SDFGTTSLKYLD 379

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 12/151 (7%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLENMP-H 62
                +F N      LDL  NKI  I       L        ++DLS N +  ++     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 63  LNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRLVNLVEI-----DPLTSLPKLQ 116
             RL  L + NN  +  +     + L  L    L      N   +       L  L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 117 FLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
                   +    +  + + + L ++     
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 18/148 (12%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLII 71
            P  F  I+  +L LR N                ++++    I  L  +     +     
Sbjct: 193 QPGAFKEIRLHKLTLRNNFD--------------SLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRL--VNLVEIDPLTSLPKLQFLSLLDNSITKKP 129
           N   + + + +  E L  L         L       ID    L  +   SL+  +I +  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 130 NYRLYVIHKLKSLRVLDFKKERMEAASL 157
           +         + L +++ K  +     L
Sbjct: 299 D--FSYNFGWQHLELVNCKFGQFPTLKL 324

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 9e-15
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 22  RELDLRGNKI------AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
           +   +  N +      A ++ +         +D   N++  LE      +L  L ++ N+
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLG----LLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY--RL 133
           I  I  +   F  ++  L  ++N+L  +  I    S+  +  +    N I  +       
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 134 YVIHKLKSLRVLD 146
              +K  +   + 
Sbjct: 667 MDDYKGINASTVT 679

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 19/140 (13%)

Query: 22  RELDLRGNKI-AVIENLGATEDQFD-----TIDLSDNEIVKL--ENMPHLNRLGTLIINN 73
             +D   NKI +   N+  + D +      T+ LS NEI K   E     + + T+I++N
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 74  NRITRINPNIGEF-------LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           N +T I  N  +           L T+ L  N+L +L +    T+LP L  + +  N  +
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
             P            L+   
Sbjct: 767 SFPT----QPLNSSQLKAFG 782

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 13  PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPH---LNRLGT 68
             F   +K  +L L  N+I  I E+  A  DQ + +  S N++  + N+ +   +  +G+
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 69  LIINNNRITRINPNIGEFLP-----KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           +  + N+I     NI   +         T+ L+ N +      +   +   +  + L +N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNN 707

Query: 124 SITKKPNYRL----YVIHKLKSLRVLD 146
            +T  P   L            L  +D
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTID 734

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLE-------NMPHLNRLGTLIIN 72
             L    NK+  I N+   +      ++D S N+I           +        T+ ++
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNL------VEIDPLTSLPKLQFLSLLDNSIT 126
            N I +    +      + T++L+NN + ++       +     +   L  + L  N +T
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
              +   +    L  L  +D
Sbjct: 742 SLSDD--FRATTLPYLSNMD 759

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 22  RELDLRGNKIAVI--ENLGATEDQFD------TIDLSDNEIVKLEN---MPHLNRLGTLI 70
             + L  N +  I   +L   +  +       TIDL  N++  L +      L  L  + 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLV---NLVEIDP--LTSLPKLQFLSLLDNSI 125
           ++ N  +           +L    + + R      ++   P  +T+ P L  L +  N I
Sbjct: 760 VSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 126 TKKPNYRLYVIHKLKSLRVLD 146
            K              L +LD
Sbjct: 819 RKVDE------KLTPQLYILD 833

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 20/156 (12%), Positives = 37/156 (23%), Gaps = 36/156 (23%)

Query: 22  RELDLRGNKI-AVIENLGATEDQFDTIDLSDNEIVKLENMPHL--------NRLG----- 67
           + +    +        +   +   D     +NE +   N+  L          +      
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 68  --------TLIINNNRITRINPNIGEF---------LPKLHTLVLTNNRLVNLVEIDPLT 110
                   +L I  NR         ++          PK+    +  N L        L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 111 SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            + KL  L  + N +                L  L 
Sbjct: 571 KMVKLGLLDCVHNKVRHLEA-----FGTNVKLTDLK 601

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 2/104 (1%)

Query: 46  TIDLSDNEIVKL--ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            + L+         + +  L  L  L    +  T      G+            +R+   
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
            +   L    +L    LL ++I + P  +        SL+    
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 22  RELDLRGNKI----AVIENLGATE--DQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINN 73
             +D+  N          N    +        D   N I++     +     L  L I +
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           N I +++  +    P+L+ L + +N  +++ ++  +    +     LL +   
Sbjct: 816 NDIRKVDEKL---TPQLYILDIADNPNISI-DVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 18/136 (13%)

Query: 22  RELDLRGNKI-----AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN---N 73
             L L G          I  L   +     +    +       +     L   +     +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELK----VLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
                      ++  +L+   L  + +    E+     + K   +SL D  I    N   
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM---KPIKKDSRISLKDTQIGNLTNRIT 438

Query: 134 YV---IHKLKSLRVLD 146
           ++   I +L  L+++ 
Sbjct: 439 FISKAIQRLTKLQIIY 454

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 19/152 (12%), Positives = 38/152 (25%), Gaps = 31/152 (20%)

Query: 22  RELDLRGNKIAVI----------ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLII 71
           + L    +   V            ++         +      +   + +   + L   I 
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP-LTSLPKLQFLSLLDNSITKKPN 130
            N  +  I  +    L       LTN     +  I   +  L KLQ +   ++  T    
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNLTNR----ITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 131 YRLYV----------------IHKLKSLRVLD 146
              +                    LK L  ++
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 18/136 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP---HLNRLGTLIIN 72
             L+L  NKI+ IE+     D F        +DL  NEI +         L  +  + ++
Sbjct: 384 HILNLTKNKISKIES-----DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSITKKPNY 131
            N+  ++  N    +P L  L+L    L N+     P   L  L  L L +N+I    + 
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND- 497

Query: 132 RLYVIHKLKSLRVLDF 147
              ++  L+ L +LD 
Sbjct: 498 --DMLEGLEKLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 25/142 (17%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP----HLNRLGTLII 71
            E+ L  NK   +       + F        + L    +  +++ P     L  L  L +
Sbjct: 433 FEIYLSYNKYLQLTR-----NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNL-------VEIDPLTSLPKLQFLSLLDNS 124
           +NN I  IN ++ E L KL  L L +N L  L         I  L  L  L  L+L  N 
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 125 ITKKPNYRLYVIHKLKSLRVLD 146
             + P     V   L  L+++D
Sbjct: 548 FDEIPV---EVFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             L+L  N++  +         F       ++D+  N I KLE      L  L  L + +
Sbjct: 28  TVLNLTHNQLRRLPA-----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +++++     F   L  L L +N +  +   +P      L  L L  N ++       
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL--- 138

Query: 134 YVIHKLKSLRVLDF 147
               +L++L+ L  
Sbjct: 139 GTQVQLENLQELLL 152

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 3   RLTADLIWKSPHFFNAIKERELDLRGNKIAVI-----ENLGATEDQFDTIDLSDNEIVKL 57
           +L   L  K          R L L  ++++         L  T      +DLS N +  +
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT--NLTMLDLSYNNLNVV 263

Query: 58  EN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV------NLVEIDP- 108
            N     L +L    +  N I  +  +    L  +  L L  +         +L +ID  
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 109 -LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
               L  L+ L++ DN I    +    +   L +L+ L 
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKS---NMFTGLINLKYLS 359

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 12/134 (8%)

Query: 22  RELDLRGNKI-AVIENLGATEDQFDTIDLSDNEI-------VKLENMPHLNRLGTLIINN 73
             L++  N I  +  N+         + LS++             ++ H + L  L +  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTK 390

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N+I++I  +   +L  L  L L  N +   +       L  +  + L  N   +      
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR--- 447

Query: 134 YVIHKLKSLRVLDF 147
                + SL+ L  
Sbjct: 448 NSFALVPSLQRLML 461

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 19/135 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + L+L+ N+++ +     ++  F        + L  N I K++N P      L TL +++
Sbjct: 76  KVLNLQHNELSQL-----SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID-PLTSLPKLQFLSLLDNSITK-KPNY 131
           N ++         L  L  L+L+NN++  L   +  + +   L+ L L  N I +  P  
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG- 189

Query: 132 RLYVIHKLKSLRVLD 146
                H +  L  L 
Sbjct: 190 ---CFHAIGRLFGLF 201

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLEN--MPHLNRLGTLIINNNRI 76
           + L LR   +  +++  +          +DLS+N I  + +  +  L +L  L + +N +
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 77  TRINPNIGEF--------LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
            R+  +            L  LH L L +N    +   +    L +L+ + L  N++   
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTL 575

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P     V +   SL+ L+
Sbjct: 576 PA---SVFNNQVSLKSLN 590

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 11/116 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD---------TIDLSDNEIVKL--ENMPHLNRLGTLI 70
             LDL+ N +A +                     ++L  N   ++  E    L  L  + 
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           +  N +  +  ++      L +L L  N + ++ +     +   L  L +  N   
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 22  RELDLRGNKI-----AVIENLGATE-----DQFDTIDLSDNEIVKLENMP--HLNRLGTL 69
               L  N I       +  L           F    +S   + K+++     L  L  L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 70  IINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT----SLPKLQFLSLLDNSI 125
            + +N I  I  N+   L  L  L L+N+   +L  +   T    +   L  L+L  N I
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 126 TKKPNYRLYVIHKLKSLRVLDF 147
           +K  +        L  L VLD 
Sbjct: 394 SKIES---DAFSWLGHLEVLDL 412

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLE----NMPHLNRLGTLIIN 72
             LDL  N ++  +      L   +     + LS+N+I  L+    ++   + L  L ++
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQ----ELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLV--EIDPLTSLPKLQFLSLLDNSITKKPN 130
           +N+I   +P     + +L  L L N +L   +  ++    +   ++ LSL ++ ++   N
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 131 YRLYVIHKLKSLRVLDF 147
                + K  +L +LD 
Sbjct: 240 TTFLGL-KWTNLTMLDL 255

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 45  DTIDLSDNEIVKLENMPH--LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
           +  D S     KL  +P      +  L + +N++ R+         +L +L +  N +  
Sbjct: 7   EVADCSHL---KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 103 LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L E +    LP L+ L+L  N +++  +          +L  L 
Sbjct: 64  L-EPELCQKLPMLKVLNLQHNELSQLSD---KTFAFCTNLTELH 103

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + +DL  N + ++         F        +DLS  EI  +E+     L+ L  LI+  
Sbjct: 35  KNIDLSFNPLKIL-----KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I   +P     L  L  LV    +L +L    P+  L  L+ L++  N I        
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCK--LP 146

Query: 134 YVIHKLKSLRVLDF 147
                L +L  +D 
Sbjct: 147 AYFSNLTNLVHVDL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN---MPHLNRLGT 68
           S         R LDL  N   ++       ++   +D   + + ++        L +L  
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 69  LIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           L I+          I   L  L+TL +  N   +    +   +   L FL L    + + 
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 129 PNYRLYVIHKLKSLRVLD 146
                 V   L  L++L+
Sbjct: 489 SW---GVFDTLHRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 30/163 (18%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I          K + L +   ++     L     +  ++ L+ N+         L  L  
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK--SLTLTMNKGSISFKKVALPSLSY 354

Query: 69  LIINNNRITRINPNIGEF-------------------------LPKLHTLVLTNNRLVNL 103
           L ++ N ++                                  L +L  L   ++ L  +
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            E     SL KL +L +   +     +    +   L SL  L 
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFD---GIFLGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 18/134 (13%)

Query: 19  IKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIIN 72
           +   E  L        +       +F        + L+   I  LE++P   +  +L I 
Sbjct: 261 VTIDEFRLTYTNDFSDDI-----VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSII 315

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
             ++ +        LP L +L LT N+           +LP L +L L  N+++      
Sbjct: 316 RCQLKQFPTL---DLPFLKSLTLTMNK---GSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 133 LYVIHKLKSLRVLD 146
              +    SLR LD
Sbjct: 370 YSDL-GTNSLRHLD 382

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL---EN 59
           + +   F +  K   LD+      +  +       F       T+ ++ N          
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFD-----GIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 60  MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119
             +   L  L ++  ++ +I+  + + L +L  L +++N L+ L        L  L  L 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLD 527

Query: 120 LLDNSITKKPNYRLYVIHKLKSLRVLD 146
              N I         + H  KSL   +
Sbjct: 528 CSFNRIETSKG---ILQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + LDL   +I  IE     +  +        + L+ N I          L  L  L+   
Sbjct: 59  QWLDLSRCEIETIE-----DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
            ++  +       L  L  L + +N + +       ++L  L  + L  N I       L
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 134 YVIHKLK-SLRVLD 146
             + +       LD
Sbjct: 174 QFLRENPQVNLSLD 187

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 21/148 (14%)

Query: 12  SPHFFNAIKERELDLRGNKI--AVIENLGATEDQFDTIDLSDNEIVKLENMPHLN----- 64
               F  IK  EL LRGN     +++             L   E     N+         
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 65  -----RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119
                 +    +        +      L  +  + L      ++  ++ +    K Q LS
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV---SIKYLEDVPKHFKWQSLS 313

Query: 120 LLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           ++   + + P         L  L+ L  
Sbjct: 314 IIRCQLKQFPT------LDLPFLKSLTL 335

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKL-----ENMPHLNR-LGTLIINN 73
           ++L++  N I   +      +      +DLS N I  +     + +    +   +L ++ 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN--- 130
           N I  I     + + KLH L L  N   + +    L +L  L    L+      + N   
Sbjct: 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 131 YRLYVIHKLKSLRVLDF 147
           +   ++  L  + + +F
Sbjct: 250 FEPSIMEGLCDVTIDEF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 26/138 (18%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             LDL   ++  I         FD       +++S N ++ L++     L  L TL  + 
Sbjct: 476 TFLDLSKCQLEQIS-----WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYR 132
           NRI      +  F   L    LTNN          +  + + Q FL  +        N  
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNN---------SVACICEHQKFLQWVKEQKQFLVNVE 581

Query: 133 LYV---IHKLKSLRVLDF 147
                   ++ +  VLDF
Sbjct: 582 QMTCATPVEMNTSLVLDF 599

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 46  TIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV 104
           T    D ++ K+ +++P  +    + ++ N +  +         +L  L L+   +  + 
Sbjct: 15  TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI- 71

Query: 105 EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           E      L  L  L L  N I             L SL  L 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSP---GSFSGLTSLENLV 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
               +     +LDL  N+I+ +  L     +   + L  N+I  +  +  L  L  L +N
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSGLT-KLTELKLGANQISNISPLAGLTALTNLELN 295

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            N++  I+P     L  L  L L  N + +   I P++SL KLQ L   +N ++   +  
Sbjct: 296 ENQLEDISP--ISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNNKVSDVSS-- 348

Query: 133 LYVIHKLKSLRVLDF 147
              +  L ++  L  
Sbjct: 349 ---LANLTNINWLSA 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
               N  K  ++ +  N+IA I  L         + L +N+I  ++ + +L  L  L ++
Sbjct: 84  TPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLKNLTNLNRLELS 142

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           +N I+ I   +   L  L  L   N     + ++ PL +L  L+ L +  N ++      
Sbjct: 143 SNTISDI-SALSG-LTSLQQLSFGN----QVTDLKPLANLTTLERLDISSNKVSDISV-- 194

Query: 133 LYVIHKLKSLRVLD 146
              + KL +L  L 
Sbjct: 195 ---LAKLTNLESLI 205

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           ++L   GN++  ++ L       + +D+S N++  +  +  L  L +LI  NN+I+ I  
Sbjct: 159 QQLSF-GNQVTDLKPLA-NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI-T 215

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            +G  L  L  L L  N+L +   I  L SL  L  L L +N I+         +  L  
Sbjct: 216 PLGI-LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP-----LSGLTK 266

Query: 142 LRVLDF 147
           L  L  
Sbjct: 267 LTELKL 272

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 11/128 (8%)

Query: 20  KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           ++ +  L    +    +     DQ  T+      I  ++ + +LN L  +  +NN++T I
Sbjct: 25  EKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
              +   L KL  +++ NN++ +   I PL +L  L  L+L +N IT         +  L
Sbjct: 84  -TPLKN-LTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITDIDP-----LKNL 133

Query: 140 KSLRVLDF 147
            +L  L+ 
Sbjct: 134 TNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L+L  N++  I  +   +     + L  N I  +  +  L +L  L   NN+++ ++ 
Sbjct: 290 TNLELNENQLEDISPISNLK-NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 348

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L  ++ L   +N++ +   + PL +L ++  L L D + T  P      +    +
Sbjct: 349 L--ANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 142 LR 143
           ++
Sbjct: 404 VK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + L    NK++ + +L       + +    N+I  L  + +L R+  L +N+   T    
Sbjct: 334 QRLFFYNNKVSDVSSLANLT-NINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPV 392

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
           N    +   +T+         L+    ++         +  N  +    
Sbjct: 393 NYKANVSIPNTVKNVTG---ALIAPATISDGGSYTEPDITWNLPSYTNE 438

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 49  LSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108
             D  I ++     L      ++    +T         L ++ TL      + +   ID 
Sbjct: 9   TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKS---IDG 63

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           +  L  L  ++  +N +T         +  L  L  +  
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILM 97

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 23/131 (17%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
           +ELDL GN ++ I                  ++LS N + +  ++  L+ L TL +NNN 
Sbjct: 37  KELDLSGNPLSQIS-----AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
           +  +        P + TL   NN +  +      +     + + L +N IT   +     
Sbjct: 92  VQELLV-----GPSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITMLRD---LD 139

Query: 136 IHKLKSLRVLD 146
                 ++ LD
Sbjct: 140 EGCRSRVQYLD 150

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
               +    R LDL  N +  +    + E    T+  ++N I ++           + + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIE----TLHAANNNISRVS-CSRGQGKKNIYLA 128

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           NN+IT +         ++  L L  N +  +   +   S   L+ L+L  N I       
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 133 LYVIHKLKSLRVLD 146
           +        L+ LD
Sbjct: 189 V-----FAKLKTLD 197

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 22  RELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           + LDL+ N+I  +    L A+ D  + ++L  N I  ++      +L TL +++N++  +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            P        +  + L NN+LV + +   L     L+   L  N          +   K 
Sbjct: 207 GPEFQS-AAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFF--SKN 261

Query: 140 KSLRVLD 146
           + ++ + 
Sbjct: 262 QRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 58  ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117
           E   + NR     + ++ + +   ++ +    +  L L+ N L  +     L    KL+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLEL 62

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L+L  N + +  +     +  L +LR LD
Sbjct: 63  LNLSSNVLYETLD-----LESLSTLRTLD 86

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRIN 80
             L+L+ N I  ++       +  T+DLS N++  +         +  + + NN++  I 
Sbjct: 172 EHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
             +      L    L  N        D  +   ++Q ++     
Sbjct: 231 KALRF-SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKLENMP---HLNRL 66
           S   F     + LDL  N +  + +  LG  + +   +D   + + ++        L  L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE--HLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 67  GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
             L I++         I   L  L  L +  N        D  T L  L FL L    + 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
           +         + L SL+VL+
Sbjct: 484 QLSP---TAFNSLSSLQVLN 500

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.1 bits (172), Expect = 9e-14
 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + LDL  N +  +         F        +DLS  EI  +E+     L+ L TLI+  
Sbjct: 31  KNLDLSFNPLRHL-----GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT--KKPNY 131
           N I  +       L  L  LV     L +L    P+  L  L+ L++  N I   K P Y
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 132 RLYVIHKLKSLRVLDF 147
                  L +L  LD 
Sbjct: 145 ----FSNLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFD--TIDLSDNEIVKLEN--MPHLNRLG 67
           S +F    +   LD + + +  +          +   +D+S        N     L+ L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 68  TLIINNNRITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
            L +  N       P+I   L  L  L L+  +L  L       SL  LQ L++  N+  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFF 507

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
                  +    L SL+VLD
Sbjct: 508 SLDT---FPYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 8/140 (5%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I +   F      + L+L   K      L         +  + N+     +   L  L  
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLK--SLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 69  LIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           L ++ N ++              L  L L+ N ++ +        L +L+ L    +++ 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLK 409

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
           +       V   L++L  LD
Sbjct: 410 QMSE--FSVFLSLRNLIYLD 427

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 19/150 (12%)

Query: 12  SPHFFNAIKERELDLRGNKI--AVIENLGATEDQFDTIDLSDNEIVKLENMPH-----LN 64
            P  F  I+  +L LR N     V++         +   L   E     N+       L 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 65  RLGTLIINNNRITRIN------PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
            L  L I   R+  ++       ++   L  + +  L +     +  +   +     Q L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV---TIERVKDFSYNFGWQHL 309

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRVLDFK 148
            L++    + P  +L     LK L     K
Sbjct: 310 ELVNCKFGQFPTLKL---KSLKRLTFTSNK 336

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + LDL   +I  IE     +  +       T+ L+ N I  L       L+ L  L+   
Sbjct: 55  QVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
             +  +       L  L  L + +N + +    +  ++L  L+ L L  N I       L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 134 YVIHKLKSLRV 144
            V+H++  L +
Sbjct: 170 RVLHQMPLLNL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 46  TIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
           +  L    I ++++  +      L + N +  +        L  L  L  T+N+  N   
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN--- 339

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
                 LP L+FL L  N ++ K            SL+ LD 
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDL 380

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 22  RELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNNRIT 77
             L + GN      + ++         +DLS  ++ +L       L+ L  L +++N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPK-LQFLSLLDNSIT 126
            ++    + L  L  L  + N ++   +   L   P  L FL+L  N   
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL---ENMPHLNRLGTLIIN 72
           ++L      +A +EN                ++++ N I      E   +L  L  L ++
Sbjct: 103 QKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVN-LVEIDPLT-SLPKLQFLSLLDNSITKKPN 130
           +N+I  I       L ++  L L+ +  +N +  I P      +L  L+L +N  +    
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 131 YRLYVIHKLKSLRVLD 146
                I  L  L V  
Sbjct: 218 KTC--IQGLAGLEVHR 231

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
            E+ L  N I VI   GA    F        IDLS+N+I +L       L  L +L++  
Sbjct: 35  TEIRLEQNTIKVIPP-GA----FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N+IT +  ++ E L  L  L+L  N++  L  +D    L  L  LSL DN +        
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 134 YVIHKLKSLR 143
             +  ++++ 
Sbjct: 149 SPLRAIQTMH 158

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             L L GNKI  +         F+       + L+ N+I  L       L+ L  L + +
Sbjct: 83  NSLVLYGNKITELPK-----SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 74  NRITRINPNIGEFLPKLHTLVLTNN 98
           N++  I       L  + T+ L  N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLEN--MPHLNRL 66
            P  F+ +K   L +   K+  I      +D  +    + L  N+I  +E   +   ++L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIP-----KDLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 67  GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
             L + +N+I  I      FLP L  L L NN+L  +     L  L  LQ + L  N+IT
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNIT 277

Query: 127 KKPNY---RLYVIHKLKSLRVLD 146
           K        +    K      + 
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 20/143 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
            EL L  NKI  IE      +          + L  N+I  +EN  +  L  L  L ++N
Sbjct: 196 NELHLDHNKIQAIE-----LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVE-----IDPLTSLPKLQFLSLLDNSITKK 128
           N+++R+   + + L  L  + L  N +  +       +           +SL +N +   
Sbjct: 251 NKLSRVPAGLPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 129 PNYRLYVIHKLKSLRVLDFKKER 151
              +      +     + F   +
Sbjct: 310 -EVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 36/152 (23%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
             L L  NKI+ I    A    F        + +S N +V++      + L  L I++NR
Sbjct: 81  YALVLVNNKISKIHE-KA----FSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNR 134

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRL------------VNLVEID----PLTSLPK----- 114
           I ++   +   L  ++ + +  N L            + L  +      LT +PK     
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194

Query: 115 LQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L  L L  N I          + +   L  L 
Sbjct: 195 LNELHLDHNKIQAIEL---EDLLRYSKLYRLG 223

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 46  TIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            +DL +N+I +L       L  L  L++ NN+I++I+      L KL  L ++ N LV +
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
               P      L  L + DN I K P     V   L+++  ++
Sbjct: 118 ----PPNLPSSLVELRIHDNRIRKVPK---GVFSGLRNMNCIE 153

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 17/136 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEI-VKLEN--MPHLNRLGTLIIN 72
             L L  N I  +     T   F        ++L      + ++     +L  L  L + 
Sbjct: 27  ERLLLSFNYIRTV-----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNL-VEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           +++I  ++P+  + L  L  L L    L +  ++     +L  L  L L  N I     +
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 132 RLYVIHKLKSLRVLDF 147
                 KL SL+ +DF
Sbjct: 142 P--SFGKLNSLKSIDF 155

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 29/147 (19%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
           + L+L  NKI  I +     + F        ++LS N + +L +     L ++  + +  
Sbjct: 293 KVLNLAYNKINKIAD-----EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLV------NLVEID----PLTSLPKLQF----LS 119
           N I  I     +FL KL TL L +N L       ++ +I      L +LPK+      + 
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 120 LLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L +N +       LY + ++  L++L 
Sbjct: 408 LSENRLENLDI--LYFLLRVPHLQILI 432

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRI 76
             +DL+ N IA+I+      L   +    T+DL DN +  +  +P +     + ++ N++
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQ----TLDLRDNALTTIHFIPSIP---DIFLSGNKL 393

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI 136
             +           + + L+ NRL NL  +  L  +P LQ L L  N  +     +    
Sbjct: 394 VTLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT--P 447

Query: 137 HKLKSLRVLD 146
            +  SL  L 
Sbjct: 448 SENPSLEQLF 457

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD--TIDLSDNEIVKLENMP-------HLNRLGTLIIN 72
           + L L  N+ +         +      + L +N +               L+ L  L +N
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           +N +  + P +   L  L  L L +NRL  L           L+ L +  N + 
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVL---SHNDLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN---MPHLNRLGTLIINNNRITR 78
            ++ L GNK+  +  +       + I LS+N +  L+    +  +  L  LI+N NR + 
Sbjct: 384 PDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 79  INPN-IGEFLPKLHTLVLTNNRLVNLVEI----DPLTSLPKLQFLSLLDNSITKKPNYRL 133
            + +      P L  L L  N L    E     D    L  LQ L L  N +   P    
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP--- 497

Query: 134 YVIHKLKSLRVLD 146
            V   L +LR L 
Sbjct: 498 GVFSHLTALRGLS 510

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 9/128 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + LDLR N +  I  +         I LS N++V L  +        + ++ NR+  ++ 
Sbjct: 365 QTLDLRDNALTTIHFI----PSIPDIFLSGNKLVTLPKIN--LTANLIHLSENRLENLDI 418

Query: 82  N-IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL--YVIHK 138
                 +P L  L+L  NR  +       +  P L+ L L +N +       L   V   
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 139 LKSLRVLD 146
           L  L+VL 
Sbjct: 479 LSHLQVLY 486

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 23/154 (14%)

Query: 11  KSPHFFNAIKERELDLRGNKIAVI------ENLGATEDQ-------FDTIDLSDNEIVKL 57
           K  + F  +    LD+ GN   V         +  ++                 + I   
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 58  -----ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL 112
                  +   + +  L +++  +  +N  + E L  L  L L  N++ N +  +    L
Sbjct: 256 DQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGL 313

Query: 113 PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
             LQ L+L  N + +  +   Y    L  +  +D
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFY---GLPKVAYID 344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLENMP--HLNRLGTLIINNNRIT 77
           + L+L      +  +  A  +      +DL  ++I  L       L  L  L +    ++
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

Query: 78  R--INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
              +       L  L  L L+ N++ +L        L  L+ +    N I     + L  
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 136 IHKLKSLRVLD 146
           +    +L    
Sbjct: 171 LQGK-TLSFFS 180

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 49  LSDNEIVKLENMP-HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
           ++      L  +P  LN    L+++ N I  +  +   FL +L  L L +      ++ +
Sbjct: 8   IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 108 PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
              +LP L+ L L  + I             L  L  L 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHP---DAFQGLFHLFELR 103

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLE---NMPHLNRLGTLIIN 72
            EL L    +    +    +  F        +DLS N+I  L    +   LN L ++  +
Sbjct: 100 FELRLYFCGL---SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 73  NNRITRINPNIGEFL--PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           +N+I  +  +  E L    L    L  N L + V +D    +   + + L
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 22  RELDLRGNKIAVIENLGATE-DQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
           + L L  N +  +     +       + L+ N +  L +      L  L I+ N++   N
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN 542

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLK 140
           P+       L  L +T+N+ +   E+    +      +++          Y         
Sbjct: 543 PD---VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDS----FS 595

Query: 141 SLRVLDF 147
            + +   
Sbjct: 596 GVSLFSL 602

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLENM--PHLNRLGTLIINNNRIT 77
            EL L  N+  V+E  G  +   Q   I+ S+N+I  +E       + +  +++ +NR+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH 137
            +   + + L  L TL+L +NR+  +   D    L  ++ LSL DN IT         +H
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 138 KLKSLRVLD 146
            L +L +L 
Sbjct: 154 SLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRL 66
           F    + R+++   NKI  IE  GA    F+       I L+ N +  +++     L  L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEE-GA----FEGASGVNEILLTSNRLENVQHKMFKGLESL 107

Query: 67  GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
            TL++ +NRIT +  +    L  +  L L +N++  +       +L  L  L+LL N
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN 163

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 3e-13
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            ELD   N I V+        +   + L  N +     + +   L  + ++ N + +I  
Sbjct: 214 EELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 271

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           +    + +L  L ++NNRLV L        +P L+ L L  N +            +   
Sbjct: 272 HPFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNHLLHVER----NQPQFDR 325

Query: 142 LRVLD 146
           L  L 
Sbjct: 326 LENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 7e-13
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENM--PHLNRLGTLIINNNRITR 78
           ++L +  N I  +  ++         + L  N++  L      +  +L TL ++NN + R
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161

Query: 79  INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
           I  +  +    L  L L++NRL ++     L+ +P L   ++  N ++         +  
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLST--------LAI 209

Query: 139 LKSLRVLD 146
             ++  LD
Sbjct: 210 PIAVEELD 217

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 17/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + +  + + +  +          D       ++L+D +I +++     + + +  L +  
Sbjct: 54  KIVTFKNSTMRKLP-----AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I  + P++ + +P L  LVL  N L +L       + PKL  LS+ +N++ +  +   
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIED--- 164

Query: 134 YVIHKLKSLRVLD 146
                  SL+ L 
Sbjct: 165 DTFQATTSLQNLQ 177

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 19/222 (8%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPH-LNR 65
               N     E+DL  N++  I         F        + +S+N +V L      +  
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIM-----YHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           L  L +++N +  +  N  +   +L  L L +N +V L     L++   L+ L+L  N  
Sbjct: 303 LKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDW 357

Query: 126 TKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSE 185
               N    +   +    V D  +       L      +E  K    + L  + + +V E
Sbjct: 358 D--CNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVE 415

Query: 186 EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKS 227
           + ++   +  A      +   +  +  Q    +   E++   
Sbjct: 416 KVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAE 457

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 9e-11
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLENMPHLNRLGTLIINNNRITR 78
           + L L  N++  ++               ++S N +  L     +     L  ++N I  
Sbjct: 174 QNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAIPIAVE---ELDASHNSINV 225

Query: 79  INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
           +   +     +L  L L +N    L +   L + P L  + L  N + K      +   K
Sbjct: 226 VRGPV---NVELTILKLQHNN---LTDTAWLLNYPGLVEVDLSYNELEKIMY---HPFVK 276

Query: 139 LKSLRVLD 146
           ++ L  L 
Sbjct: 277 MQRLERLY 284

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 47  IDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEI 106
           ID+   ++        LN    +   N+ + ++   + +   ++  L L + ++  + + 
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DT 92

Query: 107 DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                   +Q L +  N+I   P    +V   +  L VL 
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLV 129

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 59  NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
           N+ +      + I+              L     +   N+ +  L     L S  +++ L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELL 80

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           +L D  I +      Y      +++ L 
Sbjct: 81  NLNDLQIEEIDT---YAFAYAHTIQKLY 105

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + LDL  N+I  I                  + L+ N I  +E      L  L  L ++ 
Sbjct: 55  KSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYR 132
           N ++ ++ +  + L  L  L L  N    L E    + L KLQ L + +  + TK     
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-- 167

Query: 133 LYVIHKLKSLRVLD 146
                 L  L  L+
Sbjct: 168 -KDFAGLTFLEELE 180

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 16/132 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
           + L L  N I  IE     ED F        +DLS N +  L +     L+ L  L +  
Sbjct: 79  QALVLTSNGINTIE-----EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 74  NRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           N    +      F  L KL  L + N      ++      L  L+ L +  + +      
Sbjct: 134 NPYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 132 RLYVIHKLKSLR 143
            L  I  +  L 
Sbjct: 193 SLKSIQNVSHLI 204

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 18/162 (11%), Positives = 47/162 (29%), Gaps = 40/162 (24%)

Query: 22  RELDLRGNKIAVIENLGA---------------------TEDQFD------TIDLSDNEI 54
             L+L GN    +                              F        +++  +++
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 55  VKLENM--PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL-------VE 105
              E      +  +  LI++  +   +     +    +  L L +  L           E
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
            + L      + + + D S+ +       +++++  L  L+F
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMK----LLNQISGLLELEF 284

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 24/140 (17%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNN 74
            EL++  + +   E     ++         + L   + + L    +   + +  L + + 
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVS----HLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 75  RITRINPN---IGEF-----LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
            +   + +    GE            + +T+  L  ++++  L  +  L  L    N + 
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLK 290

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
             P+    +  +L SL+ + 
Sbjct: 291 SVPD---GIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 23/118 (19%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLE----------NMPHLNR 65
             L L   +  ++      E   D       ++L D ++              ++     
Sbjct: 201 SHLILHMKQHILLL-----EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
              + I +  + ++   +   +  L  L  + N+L ++        L  LQ + L  N
Sbjct: 256 FRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSV-PDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 12/94 (12%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDT---------IDLSDNEIVKLENM-PHLN 64
                    L+LR   +        +  + ++         + ++D  + ++  +   ++
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98
            L  L  + N++  +   I + L  L  + L  N
Sbjct: 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 66.6 bits (162), Expect = 4e-13
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 58  ENMPHLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKL 115
           EN+P L    +L ++NNR+ R++   +I +  P L  L L+ N L +  E+D +  L  L
Sbjct: 167 ENIPELL---SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-L 222

Query: 116 QFLSLLDNSITKK----PNYRLYVIHKLKSLRVLD 146
           + L L  NS+         Y   +  +   L  LD
Sbjct: 223 EELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 19/135 (14%)

Query: 22  RELDLRGNKIAVI-----ENLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNN 74
             + +    I  I      +L         + L  N+I K++   +  LN L  L ++ N
Sbjct: 174 SYIRIADTNITTIPQGLPPSL-------TELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY--- 131
            I+ ++       P L  L L NN+LV +     L     +Q + L +N+I+   +    
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 132 RLYVIHKLKSLRVLD 146
                 K  S   + 
Sbjct: 285 PPGYNTKKASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
             L L  NKI+ I   GA    F        + LS N++ +L        L  L ++ N 
Sbjct: 79  HTLILINNKISKISP-GA----FAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENE 132

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITK 127
           IT++  ++   L ++  + L  N L +   I+      + KL ++ + D +IT 
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITT 185

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 46  TIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            +DL +N+I ++++    +L  L TLI+ NN+I++I+P     L KL  L L+ N+L  L
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
               P      LQ L + +N ITK         + L  + V++
Sbjct: 116 ----PEKMPKTLQELRVHENEITKVRKSVF---NGLNQMIVVE 151

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 30/144 (20%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
            EL L GNKI  ++                 + LS N I  ++N  + +   L  L +NN
Sbjct: 195 TELHLDGNKITKVD-----AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNL-----VEIDPLTSLPKLQFLSLLDNSITKK 128
           N++ ++   + +    +  + L NN +  +           T       +SL  N +   
Sbjct: 250 NKLVKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV--- 305

Query: 129 PNYRLYVIHK-----LKSLRVLDF 147
              + + I       +     +  
Sbjct: 306 ---QYWEIQPSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--------MPHLNRL 66
             N    REL L  NK+  +    A       + L +N I  + +               
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 67  GTLIINNNRI--TRINPNIGEFLPKLHTLVLTNNR 99
             + + +N +    I P+    +     + L N +
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + LDL  NKI  I +                + L  + I  +E      L  L  L +++
Sbjct: 29  KSLDLSFNKITYIGH-----GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYR 132
           N ++ ++ +    L  L  L L  N    L       +L  LQ L + +  + ++     
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-- 141

Query: 133 LYVIHKLKSLRVLDF 147
                 L SL  L+ 
Sbjct: 142 -IDFAGLTSLNELEI 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 9e-13
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 19/135 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + L L+ ++I  IE      D F        +DLSDN +  L +     L+ L  L +  
Sbjct: 53  QVLILKSSRINTIE-----GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 74  NRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           N    +      F  L  L TL + N    + +       L  L  L +   S+     Y
Sbjct: 108 NPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN---Y 163

Query: 132 RLYVIHKLKSLRVLD 146
           +   +  ++ +  L 
Sbjct: 164 QSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSD-NEIVKLENMP--HLNRLGTLIINNNRI 76
           + L+L GN    +       +     T+ + +     ++  +    L  L  L I    +
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI 136
                   + +  +H L L  +    L+EI     L  +++L L D ++ +     L V 
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIF-ADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 137 HKLKSLRVLDFKKERMEAASL 157
                ++ L F+   +   S 
Sbjct: 220 EVSSPMKKLAFRGSVLTDESF 240

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 24  LDLRGNKIAVIENLGATED-QFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRIN 80
            D   ++  V+  LG  E      + +    +    +     L ++  + + N+++  + 
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
            +  + L  L  L L+ N +V     +     + P LQ L L  N +         ++  
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG-EILLT 385

Query: 139 LKSLRVLDF 147
           LK+L  LD 
Sbjct: 386 LKNLTSLDI 394

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 28/162 (17%)

Query: 7   DLIWKSPHFFNAIKE-RELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLENMPH 62
           +   K+     A    + L L  N +  ++  G          ++D+S N    + +   
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407

Query: 63  -LNRLGTLIINNNRITRINPN-----------------IGEFLPKLHTLVLTNNRLVNLV 104
              ++  L +++  I  +                       FLP+L  L ++ N+   L 
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK---LK 464

Query: 105 EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            +   +  P L  + +  N +   P     +  +L SL+ + 
Sbjct: 465 TLPDASLFPVLLVMKISRNQLKSVP---DGIFDRLTSLQKIW 503

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLENMPH-----LNRLGTLIINNN 74
           + + +  +K+ ++     ++     + +DLS+N +V+              L TL+++ N
Sbjct: 313 KRITVENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 75  RITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            +  +         L  L +L ++ N    +   D      K++FL+L    I       
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPM--PDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 133 LYVIHKLKSLRVLD 146
                  ++L VLD
Sbjct: 430 ------PQTLEVLD 437

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
             LD+  N +      L   +     + +S N++  L +      L  + I+ N++  + 
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQ----ELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP 489

Query: 81  PNIGEFLPKLHTLVLTNNRLV 101
             I + L  L  + L  N   
Sbjct: 490 DGIFDRLTSLQKIWLHTNPWD 510

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 8e-13
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 48  DLSDNEIVKLENM--PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
           ++S N I +L       L++L  LII++NRI  ++ ++ +F  +L  L L++N+LV +  
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-- 84

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                    L+ L L  N+    P         +  L+ L 
Sbjct: 85  --SCHPTVNLKHLDLSFNAFDALP--ICKEFGNMSQLKFLG 121

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 43  QFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNNRITRINPNIGEF--LPKLHTLVLTNN 98
            F  +D S+N +     EN  HL  L TLI+  N++  ++        +  L  L ++ N
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

Query: 99  RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            +    +    +    L  L++  N +T      L        ++VLD
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-----PPRIKVLD 427

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 40  TEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99
           +        +S   +V +     ++    L  +NN +T         L +L TL+L  N+
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 100 LVNL-VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L  L    +  T +  LQ L +  NS++             KSL  L+
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--DCSWTKSLLSLN 405

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQF---DTIDLSDNEIVKLENM---PHLNRLGTLIINNNR 75
             L L+ N++  +  +     Q      +D+S N +   E          L +L +++N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
           +T          P++  L L +N++ ++     +  L  LQ L++  N +   P+    +
Sbjct: 411 LTDTIF--RCLPPRIKVLDLHSNKIKSI--PKQVVKLEALQELNVASNQLKSVPD---GI 463

Query: 136 IHKLKSLRVLD 146
             +L SL+ + 
Sbjct: 464 FDRLTSLQKIW 474

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
           ++LD+  N ++  E     +          ++++S N +          R+  L +++N+
Sbjct: 377 QQLDISQNSVSYDEK----KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK 432

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           I  I   + + L  L  L + +N+L ++ +      L  LQ + L  N
Sbjct: 433 IKSIPKQVVK-LEALQELNVASNQLKSVPD-GIFDRLTSLQKIWLHTN 478

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 6/125 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             + L    +  +  +         + +++        +  L+ L  L I    +T    
Sbjct: 47  TYITLANINVTDLTGIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI 105

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L  L  L ++++   +   +  + +LPK+  + L  N         +  +  L  
Sbjct: 106 PNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITD----IMPLKTLPE 160

Query: 142 LRVLD 146
           L+ L+
Sbjct: 161 LKSLN 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEI--VKLENMPHLNRLGTLIINNNRITRI 79
           ++L +          + +     + + +   ++   K+ N+  L  L  L I+++     
Sbjct: 69  KDLTINNIHATNYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
                  LPK++++ L+ N  +   +I PL +LP+L+ L++  + +          I   
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHD-----YRGIEDF 180

Query: 140 KSLRVLD 146
             L  L 
Sbjct: 181 PKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 14/109 (12%)

Query: 39  ATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98
              +Q       DN  +              ++  +    I       +  L  + L N 
Sbjct: 1   GAAEQTGLKASQDNVNIPDSTFKAYLNG---LLGQSSTANITE---AQMNSLTYITLANI 54

Query: 99  RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
              N+ ++  +     ++ L++ +   T         I  L +L  L  
Sbjct: 55  ---NVTDLTGIEYAHNIKDLTINNIHATN-----YNPISGLSNLERLRI 95

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 21/139 (15%)

Query: 22  RELDLRGNKI------AVIENLGATEDQFDTIDLSDNEIVK----LENMPHLNRLGTLII 71
           + + +  N +        ++ +         ++   N++        +   L  L    +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLG----MLECLYNQLEGKLPAFGSEIKLASLN---L 360

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
             N+IT I  N   F  ++  L   +N+L  +  I    S+  +  +    N I      
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 132 RLY----VIHKLKSLRVLD 146
                     K  ++  ++
Sbjct: 421 NFDPLDPTPFKGINVSSIN 439

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 33/149 (22%)

Query: 22  RELDLRGNKIAVI---------ENLGATEDQFDTIDLSDNEI-----VKLENMP----HL 63
             L    NK+  I           +         ID S NEI        + +       
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMS-------AIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 64  NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL------VEIDPLTSLPKLQF 117
             + ++ ++NN+I++    +      L ++ L  N L  +       E +   +   L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           + L  N +TK  +        L  L  +D
Sbjct: 493 IDLRFNKLTKLSDDFR--ATTLPYLVGID 519

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 21/142 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD--------TIDLSDNEIVKL--ENMPHLNRLGTLII 71
             +D   N+I  ++                  +I+LS+N+I K   E     + L ++ +
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 72  NNNRITRINPNIGEFLP-------KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
             N +T I  N  +           L ++ L  N+L  L +    T+LP L  + L  NS
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 125 ITKKPNYRLYVIHKLKSLRVLD 146
            +K P           +L+   
Sbjct: 525 FSKFPT----QPLNSSTLKGFG 542

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 22  RELDLRGNKIAVI-ENLGATE-DQFDTIDLSDN-------EIVKLENMPHLNRLGTLIIN 72
             +DLR NK+  + ++  AT       IDLS N       + +    +            
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 73  NNRITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP 129
            NR  R     I    P L  L + +N +  +         P +  L + DN      
Sbjct: 551 GNRTLREWPEGITL-CPSLTQLQIGSNDIRKV----NEKITPNISVLDIKDNPNISID 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 34/155 (21%)

Query: 22  RELDLRGNKIAVIENLGATE-------DQFDTIDLSDNEIVKLE--NMPHLNRLGT---- 68
           R+  +  +         A E        Q+ T DL  + +  L    + +   L      
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 69  ---------LIINNNRITRINPNIGEF--------LPKLHTLVLTNNRLVNLVEIDPLTS 111
                    + +  NR         ++          K+  + +  N L        L  
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 112 LPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           + KL  L  L N +  K             L  L+
Sbjct: 329 MKKLGMLECLYNQLEGKLP----AFGSEIKLASLN 359

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 16/116 (13%)

Query: 22  RELDLRGNKI----AVIENLGATE--DQFDTIDLSDNEIVKLENMP----HLNRLGTLII 71
             +DL  N          N    +     +  D   N    L   P        L  L I
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT--LREWPEGITLCPSLTQLQI 573

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            +N I ++N  I    P +  L + +N  +++ ++  +    +     L  +    
Sbjct: 574 GSNDIRKVNEKI---TPNISVLDIKDNPNISI-DLSYVCPYIEAGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 12/133 (9%)

Query: 22  RELDLRGNKI-----AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRI 76
             L L G          I  L   E     + L  +     E +     +   + +  + 
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELE----VLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV- 135
                    F+        ++     +       S+ K   ++L D  I +  N   +V 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 136 --IHKLKSLRVLD 146
             + +L  LR   
Sbjct: 200 KAVMRLTKLRQFY 212

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 23/131 (17%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
           +ELDL GN ++ I                  ++LS N + +  ++  L+ L TL +NNN 
Sbjct: 37  KELDLSGNPLSQIS-----AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
           +  +        P + TL   NN +  +      +     + + L +N IT   +     
Sbjct: 92  VQELLV-----GPSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITMLRD---LD 139

Query: 136 IHKLKSLRVLD 146
                 ++ LD
Sbjct: 140 EGCRSRVQYLD 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
               +    R LDL  N +  +    + E    T+  ++N I ++           + + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIE----TLHAANNNISRVS-CSRGQGKKNIYLA 128

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           NN+IT +         ++  L L  N +  +   +   S   L+ L+L  N I       
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 133 LYVIHKLKSLRVLD 146
           +        L+ LD
Sbjct: 189 V-----FAKLKTLD 197

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 22  RELDLRGNKIAVIE--NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           + LDL+ N+I  +    L A+ D  + ++L  N I  ++      +L TL +++N++  +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
            P        +  + L NN+LV + +   L     L+   L  N   
Sbjct: 207 GPEFQS-AAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 58  ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117
           E   + NR     + ++ + +   ++ +    +  L L+ N L  +     L    KL+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLEL 62

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L+L  N + +  +     +  L +LR LD
Sbjct: 63  LNLSSNVLYETLD-----LESLSTLRTLD 86

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRIN 80
             L+L+ N I  ++       +  T+DLS N++  +         +  + + NN++  I 
Sbjct: 172 EHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
             +      L    L  N        D  +   ++Q ++     
Sbjct: 231 KALRF-SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 13/103 (12%)

Query: 46  TIDLSDNEIVKL--ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
              ++D+ + +           +  L ++ N +++I+        KL  L L++N    L
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV---L 70

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            E   L SL  L+ L L +N + +        +    S+  L 
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQE--------LLVGPSIETLH 105

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 14/148 (9%), Positives = 38/148 (25%), Gaps = 5/148 (3%)

Query: 22  RELDLRGNKI--AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
              DLRGN      + +  +   +  T+     + +  +N                   +
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 80  NPNIGEFLPKLH--TLVLTNNRLVNLVEIDPLT-SLPKLQFLSLLDNSITKKPNYRLYVI 136
                + L  L      L + +      ++    +  + + +  L        +      
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 137 HKLKSLRVLDFKKERMEAASLFASEEME 164
               +L       +   +    A  E++
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 12/109 (11%), Positives = 29/109 (26%), Gaps = 6/109 (5%)

Query: 46  TIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV 104
            +    +E  +LE    +  R   +     +   +   +        TL      L    
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ- 375

Query: 105 EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERME 153
             +   +  +L           +  +       +   L++L    +R E
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQH----ATEEQSPLQLLRAIVKRYE 420

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HLNRLGTLI 70
           + L L    +  I         F        I +S +  V L+ +      +L+++  + 
Sbjct: 34  QTLKLIETHLRTIP-----SHAFSNLPNISRIYVSID--VTLQQLESHSFYNLSKVTHIE 86

Query: 71  I-NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
           I N   +T I+P+  + LP L  L + N  L    ++  + S      L + DN 
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 21  ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM--PHLNRLGTLIIN-NNRIT 77
           E +  +    I  I +L  +     T+ L +  +  + +    +L  +  + ++ +  + 
Sbjct: 13  EEDFRVTCKDIQRIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYRLYV 135
           ++  +    L K+  + + N R  NL  IDP  L  LP L+FL + +  +   P+  L  
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTR--NLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTK 125

Query: 136 IHKLKSLRVLD 146
           ++      +L+
Sbjct: 126 VYSTDIFFILE 136

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 14/131 (10%)

Query: 22  RELDLRGNKIAVIENLGATE--DQFDTIDLSDNEIVKLENMPH------LNRLGTLIINN 73
           + L +    + +  +L      D F  ++++DN    + ++P        N   TL + N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYN 165

Query: 74  NRITRINPNIGEF-LPKLHTLVLTNNRLVNLVEIDPLTSLP-KLQFLSLLDNSITKKPNY 131
           N  T +      F   KL  + L  N+ + +++ D    +      L +   S+T  P+ 
Sbjct: 166 NGFTSVQGYA--FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223

Query: 132 RLYVIHKLKSL 142
            L  + +L + 
Sbjct: 224 GLEHLKELIAR 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPH-LNRLGTLIINN 73
                +  +L+L   ++  ++ +  T     T+DLS N++  L  +   L  L  L ++ 
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           NR+T +       L +L  L L  N L  L     LT  PKL+ LSL +N++T+ P    
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPA--- 165

Query: 134 YVIHKLKSLRVLD 146
            +++ L++L  L 
Sbjct: 166 GLLNGLENLDTLL 178

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 13  PHFFNAIKERELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKLENM--PHLNRL 66
                      LDL  N++     + + L A       +D+S N +  L       L  L
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALT----VLDVSFNRLTSLPLGALRGLGEL 126

Query: 67  GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
             L +  N +  + P +    PKL  L L NN L  L     L  L  L  L L +NS+ 
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY 185

Query: 127 KKPN 130
             P 
Sbjct: 186 TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 69  LIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           L ++ N +   +        +L  L L       L ++    +LP L  L L  N +   
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P     +   L +L VLD
Sbjct: 93  PL----LGQTLPALTVLD 106

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 21/113 (18%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HLNRLGTLI 70
             LD+  N++  +                  + L  N   +L+ +P        +L  L 
Sbjct: 103 TVLDVSFNRLTSLP-----LGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLS 154

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           + NN +T +   +   L  L TL+L  N L  +           L F  L  N
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGN 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 17/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           ++LDL+ NK++ + +  A    F        + L+DN++  L       L  L TL + +
Sbjct: 40  KKLDLQSNKLSSLPS-KA----FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N++  +   + + L  L  L L  N+L +L       SL KL +LSL  N +   P    
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPK--- 150

Query: 134 YVIHKLKSLRVLD 146
            V  KL SL+ L 
Sbjct: 151 GVFDKLTSLKELR 163

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 20/113 (17%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPH-----LNRLGTLI 70
            EL L  N++  +         FD       + L  N   +L+++P      L  L  L 
Sbjct: 112 AELRLDRNQLKSLPP-RV----FDSLTKLTYLSLGYN---ELQSLPKGVFDKLTSLKELR 163

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           + NN++ R+     + L +L TL L NN+L  + E     SL KL+ L L +N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 22  RELDLRGNKIAVI-----ENLGATEDQFDTIDLSDNEIVKLENM--PHLNRLGTLIINNN 74
             L +  NK+  +     + L         + L  N++  L       L +L  L +  N
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNL----AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
            +  +   + + L  L  L L NN+L  + E      L +L+ L L +N + + P     
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 135 VIHKLKSLR 143
            + KLK L+
Sbjct: 203 SLEKLKMLQ 211

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 30/156 (19%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLG 67
           + K P   N+   + +D+  N +  + +   + E     I   +N++ +L  + +L  L 
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE----FIAAGNNQLEELPELQNLPFLT 198

Query: 68  TLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL--------------- 112
            +  +NN + ++          L ++V  NN L  L E+  L  L               
Sbjct: 199 AIYADNNSLKKLPDLPL----SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD 254

Query: 113 --PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
             P L+ L++ DN +T  P     +   L  L V +
Sbjct: 255 LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 29/149 (19%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
           P   N      +    N +  + +L       ++I   +N + +L  + +L  L T+  +
Sbjct: 189 PELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNL-VEIDPLTSL--------------PKLQF 117
           NN +  +          L  L + +N L +L      LT L              P L +
Sbjct: 246 NNLLKTLPDLPP----SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L+   N I    +          SL  L+
Sbjct: 302 LNASSNEIRSLCD-------LPPSLEELN 323

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 22/126 (17%)

Query: 22  RELDLRGNKI-AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
              +     +  +   L       + + +S+N++ KL  + + + L  + ++NN + ++ 
Sbjct: 117 LVDNNNLKALSDLPPLL-------EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLK 140
               +  P L  +   NN+   L E+  L +LP L  +   +NS+ K P+          
Sbjct: 170 ----DLPPSLEFIAAGNNQ---LEELPELQNLPFLTAIYADNNSLKKLPD-------LPL 215

Query: 141 SLRVLD 146
           SL  + 
Sbjct: 216 SLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 21/125 (16%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L++R N +  +  L         +D+S+N    L  +P    L  L  ++N I  +  
Sbjct: 260 EALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLSELP--PNLYYLNASSNEIRSLC- 313

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
              +  P L  L ++NN+L+ L         P+L+ L    N + + P          ++
Sbjct: 314 ---DLPPSLEELNVSNNKLIELPA-----LPPRLERLIASFNHLAEVPE-------LPQN 358

Query: 142 LRVLD 146
           L+ L 
Sbjct: 359 LKQLH 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             LD+  N  + +  L         ++ S NEI  L +      L  L ++NN++  +  
Sbjct: 280 TFLDVSENIFSGLSELP---PNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIELPA 334

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                  +L  L+ + N L  + E         L+ L +  N + + P+    +   ++ 
Sbjct: 335 LPP----RLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLREFPD----IPESVED 381

Query: 142 LRV 144
           LR+
Sbjct: 382 LRM 384

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 27/137 (19%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
            EL++  NK+  +       E     +  S N + ++        L  L +  N +    
Sbjct: 320 EELNVSNNKLIELPALPPRLE----RLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFP 373

Query: 81  PNIG---------------EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
                              E    L  L +  N L    +         ++ L +    +
Sbjct: 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD-----IPESVEDLRMNSERV 428

Query: 126 TKKPNYRLYVIHKLKSL 142
                +      KL+  
Sbjct: 429 VDPYEFAHETTDKLEDD 445

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLENM--PHLNRLGTLIINNN 74
           +  DL  +KI  +      +    E     + L+ NEI K+++     L  L  L ++ N
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLE----QLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
            +  I+  + E L KL  L L+ N +  L        LP L+ L+L  N +   P+    
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLKSVPD---G 389

Query: 135 VIHKLKSLRVLD 146
           +  +L SL+ + 
Sbjct: 390 IFDRLTSLQKIW 401

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 22/155 (14%)

Query: 10  WKSPHFFNAIKERELDLRGNKIAV--------------IENLGATEDQFDTIDLSDNEIV 55
            K  + F       LDL GN                  I++L  +               
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 56  KLENMP----HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS 111
             +N        + + T  ++ ++I  +  ++      L  L L  N +  + + +    
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWG 321

Query: 112 LPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L  L  L+L  N +    +    +   L  L VLD
Sbjct: 322 LTHLLKLNLSQNFLGSIDS---RMFENLDKLEVLD 353

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 31/145 (21%), Positives = 47/145 (32%), Gaps = 9/145 (6%)

Query: 7   DLIWKSPHFFNAIKERELDLRGNKIAVIENL---GATEDQFDTIDLSDNEIVKLENM--P 61
                     +                 +N    G       T DLS ++I  L      
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
           H   L  L +  N I +I+ N    L  L  L L+ N L ++ +     +L KL+ L L 
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLS 355

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLD 146
            N I    +        L +L+ L 
Sbjct: 356 YNHIRALGD---QSFLGLPNLKELA 377

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 19/136 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEI---VKLENMPHLNRLGTLIIN 72
             +DL  N IA +      E  F        + +        ++      L+ L  L ++
Sbjct: 33  NYVDLSLNSIAELN-----ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNL-VEIDPLTSLPKLQFLSLLDNSITK-KPN 130
            N+  ++       L  L  L LT   L    +  +    L  L+ L L DN+I K +P 
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 131 YRLYVIHKLKSLRVLD 146
                   ++   VLD
Sbjct: 148 ---SFFLNMRRFHVLD 160

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 14/110 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
            +L L  N+I  I+     ++ F        ++LS N +  +++    +L++L  L ++ 
Sbjct: 302 EQLTLAQNEINKID-----DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           N I  +       LP L  L L  N+L ++ +      L  LQ + L  N
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 15/142 (10%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRL 66
           F      + L +      ++         F        + L  N+ ++LE      L  L
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNT----FRGLSSLIILKLDYNQFLQLETGAFNGLANL 105

Query: 67  GTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
             L +    +     +   F  L  L  LVL +N +  +       ++ +   L L  N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 125 ITKKPNYRLYVIHKLKSLRVLD 146
           +       L          +L 
Sbjct: 166 VKSICEEDLLNFQGKH-FTLLR 186

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 22/154 (14%), Positives = 45/154 (29%), Gaps = 21/154 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP---HLNRLGTLIIN 72
             L L    +   +    + + F        + L DN I K++      ++ R   L + 
Sbjct: 106 EVLTLTQCNL---DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 73  NNRITRINPNIGEFLPKLH--TLVLTNNRLVNL-------VEIDPLTSLPKLQFLSLLDN 123
            N++  I           H   L L++  L ++        +         +  L L  N
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 124 SITKKPNYRLYVIHKLKSLRVLDFKKERMEAASL 157
              +    R +       ++ L         +S 
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 6e-11
 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 12/157 (7%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKI---AVIENLGATEDQFDTIDLSDNEIVKLE 58
            R+ + +++ +         +EL L   ++   A    L AT    + ++L +      +
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 59  NMPH------LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN---LVEIDPL 109
                        L  L I        +       P L TL L++N  +    L+     
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 110 TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
              P LQ L+L +  +         +      L+ LD
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 16/135 (11%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPH------LNRLGTLIINNN 74
           + L +                    T+DLSDN  +    +           L  L + N 
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 75  RITRINPNIGEF---LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
            +   +           +L  L L++N L +           +L  L+L    + + P  
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK- 270

Query: 132 RLYVIHKLKSLRVLD 146
                     L VLD
Sbjct: 271 -----GLPAKLSVLD 280

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDT----IDLSDNEIVKLENMP---HLNRLGTLIINNN 74
           + L LR   +     + +           +DLS N +      P     ++L +L ++  
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
            + ++   +     KL  L L+ N    L        LP++  LSL  N   
Sbjct: 264 GLKQVPKGL---PAKLSVLDLSYN---RLDRNPSPDELPQVGNLSLKGNPFL 309

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 48  DLSDNEIVKLENM--PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
            LS N I +L       L+ L  L +++NRI  ++ ++  F   L  L +++NRL N+  
Sbjct: 58  SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-- 115

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                 +  L+ L L  N     P  +      L  L  L 
Sbjct: 116 --SCCPMASLRHLDLSFNDFDVLPVCK--EFGNLTKLTFLG 152

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 11/109 (10%)

Query: 43  QFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100
            F  ++ + N            L RL TLI+  N +      +      + +L   +  L
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSL 412

Query: 101 VNL--VEIDPLTSLP-KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            +L     D   +    +  L+L  N +T      L        ++VLD
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-----PPKVKVLD 456

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 68  TLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            L ++ N I+ +      FL +L  L L++NR+ +L +         L++L +  N +  
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQN 114

Query: 128 KPNYRLYVIHKLKSLRVLD 146
                      + SLR LD
Sbjct: 115 IS------CCPMASLRHLD 127

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 21/135 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPH------LNRLGTLIINNNR 75
           + L L+ N +     +        +++  D  +  L +  +         +  L +++N 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 76  ITRINPNIGEF---LPKLHTLVLTNNRLVNL-VEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           +T        F    PK+  L L NNR++++  ++  L +   LQ L++  N +   P+ 
Sbjct: 440 LTG-----SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA---LQELNVASNQLKSVPD- 490

Query: 132 RLYVIHKLKSLRVLD 146
              V  +L SL+ + 
Sbjct: 491 --GVFDRLTSLQYIW 503

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 48  DLSDNEIVKLENMP--HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
            LS ++   +  +     +    L    N  T         L +L TL+L  N L N  +
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 106 I-DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           +     ++  L+ L +  NS+      R       +S+ VL+
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRT--CAWAESILVLN 434

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 46  TIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
           ++D  ++ I  +  +  L  L  LI  +N IT ++ +       L  L   +N+L NL  
Sbjct: 46  SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQ---NTNLTYLACDSNKLTNL-- 100

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
              +T L KL +L+   N +TK        + +   L  L+
Sbjct: 101 --DVTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLN 133

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L+   N +  I+    T  Q   +D   N+ +   ++    +L TL  + N+IT ++ 
Sbjct: 130 TYLNCARNTLTEIDVSHNT--QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV 187

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                   L+ L    N +  L     L    +L FL    N +T+        +  L  
Sbjct: 188 ---SQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID------VTPLTQ 234

Query: 142 LRVLD 146
           L   D
Sbjct: 235 LTYFD 239

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 15/126 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             LD   + I  +  +         +  + N I  L ++     L  L  ++N++T ++ 
Sbjct: 45  TSLDCHNSSITDMTGIEKLT-GLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLDV 102

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L KL  L    N+L  L     ++  P L +L+   N++T+        +     
Sbjct: 103 T---PLTKLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEID------VSHNTQ 149

Query: 142 LRVLDF 147
           L  LD 
Sbjct: 150 LTELDC 155

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 14/125 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L      +  I+    T  Q           +K  ++ H  +L  L      IT ++ 
Sbjct: 257 TTLHCIQTDLLEIDLTHNT--QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           +     PKL  L L N  L  L     ++   KL+ LS ++  I          + K+ +
Sbjct: 315 S---QNPKLVYLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQD-----FSSVGKIPA 362

Query: 142 LRVLD 146
           L    
Sbjct: 363 LNNNF 367

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 15/125 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            ELD   NK     ++     Q  T+D S N+I +L ++     L  L  + N IT+++ 
Sbjct: 151 TELDCHLNKKITKLDVTPQT-QLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKLDL 208

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           N      +L  L  ++N+L  +     +T L +L +     N +T+        +  L  
Sbjct: 209 N---QNIQLTFLDCSSNKLTEI----DVTPLTQLTYFDCSVNPLTELD------VSTLSK 255

Query: 142 LRVLD 146
           L  L 
Sbjct: 256 LTTLH 260

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 15/126 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             LD   NK+  I+    T+      D S N + +L ++  L++L TL      +  I+ 
Sbjct: 215 TFLDCSSNKLTEIDVTPLTQLT--YFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEIDL 271

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                  +L             ++   +T   +L  L      IT+        + +   
Sbjct: 272 T---HNTQLIYFQAEGC---RKIKELDVTHNTQLYLLDCQAAGITELD------LSQNPK 319

Query: 142 LRVLDF 147
           L  L  
Sbjct: 320 LVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLII 71
                   +   LD   NKI  ++           ++   N I KL ++    +L  L  
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELDVSQNKLLN--RLNCDTNNITKL-DLNQNIQLTFLDC 219

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           ++N++T I+      L +L     + N L  L     +++L KL  L  +   + +    
Sbjct: 220 SSNKLTEIDVTP---LTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDLLEID-- 270

Query: 132 RLYVIHKLKSLRVLDF 147
               +     L     
Sbjct: 271 ----LTHNTQLIYFQA 282

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 4e-10
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 49  LSDNEIVKLENMPHLNRLGTLII-NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
             D  +  L ++P    L  L I N   +  +       L +L  L +  + L   V  D
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPD 74

Query: 108 PLTSLPKLQFLSLLDNSITKKP 129
                P+L  L+L  N++    
Sbjct: 75  AFHFTPRLSRLNLSFNALESLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 5e-10
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 46  TIDLSDN-EIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
            + + +   +  LE   +  L  L  L I  + +  + P+   F P+L  L L+ N L +
Sbjct: 35  ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES 94

Query: 103 LVEIDPLTSLPKLQFLSLLDNSIT 126
           L     +  L  LQ L L  N + 
Sbjct: 95  LSW-KTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 68  TLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            L    +       ++      L  L + N + +  +E+  L  L +L+ L+++ + +  
Sbjct: 12  GLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 128 KPNYRLYVIHKLKSLRVLD 146
                    H    L  L+
Sbjct: 71  VAP---DAFHFTPRLSRLN 86

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 6/126 (4%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDN-EIVKLENMP---HLNRLGTLIINNNRI 76
           + L +    I  + +       Q   +D+ DN  I  +E             L +N N I
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI 136
             I+ +           +  NN L  L   D          L +    I   P+Y L  +
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 137 HKLKSL 142
            KL++ 
Sbjct: 226 KKLRAR 231

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 26/128 (20%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITR-IN 80
            EL     K+ VI+     +  F                     L  + I+ N +   I 
Sbjct: 33  IELRFVLTKLRVIQ-----KGAFS----------------GFGDLEKIEISQNDVLEVIE 71

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
            ++   LPKLH + +      NL+ I+P    +LP LQ+L + +  I   P+       +
Sbjct: 72  ADVFSNLPKLHEIRIEKAN--NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 139 LKSLRVLD 146
              L + D
Sbjct: 130 KVLLDIQD 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 9e-08
 Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSD-NEIVKLEN--MPHLNRLGTLIINNNRITR 78
             L L  N I  I N      Q D ++LSD N + +L N      +    L I+  RI  
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

Query: 79  INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
           +     E L KL      N +     ++  L  L  L   SL   S
Sbjct: 217 LPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYPS 257

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
             L++  + +  + + L A      T+ + DN +  L        L TL ++ N++T + 
Sbjct: 43  AVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLP 97

Query: 81  PNIGEFLPKLHTLVLTNNRLV----NLVEID----PLTSLPK----LQFLSLLDNSITKK 128
                 L +L         L      L ++      LTSLP     LQ LS+ DN +   
Sbjct: 98  VLPPG-LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL 156

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P     +  +L  L   +
Sbjct: 157 PA----LPSELCKLWAYN 170

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
           +EL +  N++A +         +   +   +N +  L  +P  + L  LI++ NR+T + 
Sbjct: 184 QELSVSDNQLASLPTLPS----ELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLTSLP 237

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLK 140
                   +L  L+++ NRL +L    P      L  LS+  N +T+ P      +  L 
Sbjct: 238 VLPS----ELKELMVSGNRLTSL----P-MLPSGLLSLSVYRNQLTRLPES----LIHLS 284

Query: 141 SLRVLD 146
           S   ++
Sbjct: 285 SETTVN 290

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            +L + GN++  +  L         + +SDN++  L      + L  L   NN++T +  
Sbjct: 124 CKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSLPM 178

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                   L  L +++N+L +L          +L  L   +N +T  P         LK 
Sbjct: 179 LPS----GLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPAL----PSGLKE 225

Query: 142 LRVLD 146
           L V  
Sbjct: 226 LIVSG 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 22  RELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRIT 77
            +L    N++    A+   L         + +S N +  L      + L  L+++ NR+T
Sbjct: 204 YKLWAYNNRLTSLPALPSGLK-------ELIVSGNRLTSLP--VLPSELKELMVSGNRLT 254

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            +          L +L +  N+L  L E   L  L     ++L  N ++++    
Sbjct: 255 SLPMLPS----GLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSERTLQA 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 53  EIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL 112
            +V+       N    L +  + +T +   +      + TLV+ +N L +L         
Sbjct: 29  AVVQKMRACLNNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA-----LP 80

Query: 113 PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           P+L+ L +  N +T  P     +   L  L +  
Sbjct: 81  PELRTLEVSGNQLTSLPV----LPPGLLELSIFS 110

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 22/138 (15%)

Query: 22  RELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRI 76
             L+LR   +         L   +     + +    +++L + M     L TL +  N +
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQ----HMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 77  TRINPNIGEFLPKLHTLVLT-NNRLV-------NLVEIDPLTSLPKLQFLSLLDNSITKK 128
             +  +I   L +L  L +     L        +         L  LQ L L    I   
Sbjct: 140 RALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P      I  L++L+ L 
Sbjct: 199 PAS----IANLQNLKSLK 212

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 28/148 (18%)

Query: 15  FFNAIKERELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKL-ENMPHLNRLGTL 69
            F     + + +    +      ++     E    T+ L+ N +  L  ++  LNRL  L
Sbjct: 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLE----TLTLARNPLRALPASIASLNRLREL 155

Query: 70  II-NNNRITRINPNIG--------EFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFL 118
            I     +T +   +         + L  L +L L    + +L    P  + +L  L+ L
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSL 211

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            + ++ ++         IH L  L  LD
Sbjct: 212 KIRNSPLSALGP----AIHHLPKLEELD 235

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 20/138 (14%)

Query: 22  RELDLRG-NKIAVI-ENLGATEDQFD--------TIDLSDNEIVKL-ENMPHLNRLGTLI 70
           REL +R   ++  + E L +T+   +        ++ L    I  L  ++ +L  L +L 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212

Query: 71  INNNRITRINPNIGEFLPKLHTLVLT-NNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKK 128
           I N+ ++ + P I   LPKL  L L     L N   I        L+ L L D +++   
Sbjct: 213 IRNSPLSALGPAIHH-LPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTL 269

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P      IH+L  L  LD
Sbjct: 270 PL----DIHRLTQLEKLD 283

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 46  TIDLSDNEIV-KLENMPHLNRLGTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVN 102
           ++ LS++ I   +        L +L ++ N ++     +        L  L +++N L  
Sbjct: 81  SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140

Query: 103 LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
             ++     L  L+ L L  NSI+        +      L+ L 
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 41/176 (23%)

Query: 4   LTADLIWKSPHFFNAIKERELDLRGNK----IAVIENLGATEDQFDTIDLSDN----EIV 55
           L       S    +      L L  +     ++  +   +      ++DLS N     + 
Sbjct: 62  LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLT----SLDLSRNSLSGPVT 117

Query: 56  KLENMPHLNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRL-------------- 100
            L ++   + L  L +++N +      + G  L  L  L L+ N +              
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 101 VNLVEID----------PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
             L  +            ++    L+FL +  N+ +      +  +    +L+ LD
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG----IPFLGDCSALQHLD 229

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 25/140 (17%)

Query: 22  RELDLRGNK--------IAVIENLGATEDQFDTIDLSDNEI---VKLENMPHLNRLGTLI 70
             LDL GN               L       +++ LS N     + ++ +  +  L  L 
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLL-------ESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 71  INNNRIT-RINPNIGEFLPKLHTLVLTNNRLV-NLVEIDPLTSLPKLQFLSLLDNSITKK 128
           ++ N  +  +  ++      L TL L++N     ++          LQ L L +N  T K
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 129 -PNYRLYVIHKLKSLRVLDF 147
            P      +     L  L  
Sbjct: 410 IPPT----LSNCSELVSLHL 425

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 27/148 (18%)

Query: 12  SPHFFNAIKERELDLRGNKI-----AVIENLGATEDQFDTIDLSDN----EIVKLENMPH 62
            P   N  +   L L  N +     + + +L    D    + L  N    EI   + + +
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD----LKLWLNMLEGEI--PQELMY 464

Query: 63  LNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLS 119
           +  L TLI++ N +T  I   +      L+ + L+NNRL   +   P  +  L  L  L 
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEI---PKWIGRLENLAILK 520

Query: 120 LLDNSITKK-PNYRLYVIHKLKSLRVLD 146
           L +NS +   P      +   +SL  LD
Sbjct: 521 LSNNSFSGNIPAE----LGDCRSLIWLD 544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 40/147 (27%)

Query: 13  PHFFNAIKERELDLRGNKI-----AVIENLGATEDQFDTIDLSDNEI---VKLENMPHLN 64
           P   +    + LD+ GNK+       I      +     +++S N+    +    +  L 
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELK----LLNISSNQFVGPIPPLPLKSLQ 272

Query: 65  RLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRLV-----------NLVEID----- 107
               L +  N+ T  I   +      L  L L+ N               L  +      
Sbjct: 273 ---YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 108 --------PLTSLPKLQFLSLLDNSIT 126
                    L  +  L+ L L  N  +
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 22  RELDLRGNKI-----AVIENLGATEDQFDTIDLSDNEIV-KL-ENMPHLNRLGTLIINNN 74
           R+L L  N +       +  +       +T+ L  N++  ++   + +   L  + ++NN
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVK----TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 75  RIT-RINPNIGEFLPKLHTLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSIT 126
           R+T  I   IG  L  L  L L+NN       I   L     L +L L  N   
Sbjct: 501 RLTGEIPKWIGR-LENLAILKLSNNSFSG--NIPAELGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 31/149 (20%)

Query: 12  SPHFFNAIKERELDLRGNK--------IAVIENLGATEDQFDTIDLSDNEI---VKLENM 60
                       LDL  N           + +  G  +     + +S N+I   V +   
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK----HLAISGNKISGDVDVSRC 199

Query: 61  PHLNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRLVNLVEI-DPLTSLPKLQFL 118
            +L     L +++N  +  I P +G+    L  L ++ N+L    +    +++  +L+ L
Sbjct: 200 VNLE---FLDVSSNNFSTGI-PFLGD-CSALQHLDISGNKLSG--DFSRAISTCTELKLL 252

Query: 119 SLLDNSITKK-PNYRLYVIHKLKSLRVLD 146
           ++  N      P         LKSL+ L 
Sbjct: 253 NISSNQFVGPIPP------LPLKSLQYLS 275

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRI 79
            EL L GN+  ++    +       IDLS+N I  L N    ++ +L TLI++ NR+  I
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVE--IDPLTSLPKLQFLSLLDN 123
            P   + L  L  L L  N +  + E   + L++   L  L++  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA---LSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 45  DTIDLSDNEIVKLENM---PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV 101
             + L+DNE+ ++ +      L  L  L +  N++T I PN  E    +  L L  N+  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-- 89

Query: 102 NLVEIDPLTSLP--------KLQFLSLLDNSITKKPN 130
                  +  +         +L+ L+L DN I+    
Sbjct: 90  -------IKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 25/116 (21%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRIT 77
            EL L  N++  I + G          ++L  N++  +E       + +  L +  N+I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 78  RINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLP--------KLQFLSLLDN 123
            I  N   F  L +L TL L +N+         ++ +          L  L+L  N
Sbjct: 92  EI-SN-KMFLGLHQLKTLNLYDNQ---------ISCVMPGSFEHLNSLTSLNLASN 136

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 26/135 (19%)

Query: 22  RELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITR 78
            +LDL+   +A +         +   ++L  N++  L       L  LGTL + NN++  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 79  INPNIGEFLPKLHTLVLTNN-----------RLVNLVEID----PLTSLP--------KL 115
           +   + + L +L  L L  N           RL  L E+      L S+P         L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 116 QFLSLLDNSITKKPN 130
           Q LSL  N +   P+
Sbjct: 158 QTLSLSTNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 23  ELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINNN 74
            L L  N++A +         FD       + L  N++  L +     L +L  L +N N
Sbjct: 87  TLGLANNQLASLP-----LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           ++  I     + L  L TL L+ N+L + V       L KLQ ++L  N
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 29/129 (22%)

Query: 22  RELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRIT 77
             L++  N +     +  +L       + +D  DN +  L        L  L ++NN++T
Sbjct: 83  TVLEITQNALISLPELPASL-------EYLDACDNRLSTLP--ELPASLKHLDVDNNQLT 133

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH 137
            +          L  +   NN+L  L E         L+ LS+ +N +T  P        
Sbjct: 134 MLPELPA----LLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE------- 177

Query: 138 KLKSLRVLD 146
             +SL  LD
Sbjct: 178 LPESLEALD 186

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             ++   N++     L       + + + +N++  L  +P    L  L ++ N +  +  
Sbjct: 143 EYINADNNQL---TMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA 197

Query: 82  NIGE---FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
                              NR+ ++ E   + SL     + L DN ++ +    L
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSSRIRESL 250

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 48  DLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
             + NE V L     +N+   L +N   ++ +  N+    P++  L +T N L++L    
Sbjct: 43  GENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISL---- 95

Query: 108 PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                  L++L   DN ++  P     +   LK L V +
Sbjct: 96  -PELPASLEYLDACDNRLSTLPE----LPASLKHLDVDN 129

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 42/276 (15%), Positives = 77/276 (27%), Gaps = 70/276 (25%)

Query: 36  NLGATEDQFDTIDLSDNEIVK-----LENMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90
           N  +  D    I L  + I       L++ P+ N L  L++ N +  +       F    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKA---WNAFNLSC 266

Query: 91  HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKE 150
             L+ T  + V     D             L  + T      + + H   +L        
Sbjct: 267 KILLTTRFKQV----TD------------FLSAATTT----HISLDHHSMTL-------T 299

Query: 151 RMEAASLFASE-EMEEEAKKESMKTLMPVEVPNVSEEEE------QQTPKVVAPTPEQII 203
             E  SL     +   +     + T  P  +  ++E              V       II
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 204 AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSG------SKDVKENDEKMVPDV 257
               + +N     E  ++   L     P    IP   +          +K +   +V  +
Sbjct: 360 E---SSLNVLEPAEYRKMFDRL--SVFPPSAHIP---TILLSLIWFDVIKSDVMVVVNKL 411

Query: 258 ENEADVEPNNVEN------------QKNDELAAMEQ 281
              + VE    E+             K +   A+ +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 46/164 (28%)

Query: 15  FFNAIKERELDLR-----GN--KIAVIENLGA-TEDQFDTIDLSDNEIVKLENMPHLN-- 64
               +  R  DL       N  ++++I        D   T D          N  H+N  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSII---AESIRDGLATWD----------NWKHVNCD 353

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVL-------TNNRLV----NLVEIDPLTSLP 113
           +L T+I   + +  + P   E+      L +           L     ++++ D +  + 
Sbjct: 354 KLTTII--ESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASL 157
           KL   SL++    K+P      I  +     L+ K +     +L
Sbjct: 410 KLHKYSLVE----KQPKESTISIPSIY----LELKVKLENEYAL 445

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 34/150 (22%), Positives = 52/150 (34%), Gaps = 35/150 (23%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLN 64
                    R L L GNK+    ++ A             + L+ N++  L N     L 
Sbjct: 57  QGIQYLPNVRYLALGGNKL---HDISA----LKELTNLTYLILTGNQLQSLPNGVFDKLT 109

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP--------KLQ 116
            L  L++  N++  +   + + L  L  L L +N+L          SLP         L 
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL---------QSLPKGVFDKLTNLT 160

Query: 117 FLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            L L  N +   P     V  KL  L+ L 
Sbjct: 161 ELDLSYNQLQSLPE---GVFDKLTQLKDLR 187

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
                     ++    + I  ++ +         + L  N++  +  +  L  L  LI+ 
Sbjct: 35  VTQNELNSIDQIIANNSDIKSVQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILT 93

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            N++  +   + + L  L  LVL  N+L +L        L  L +L+L  N +   P   
Sbjct: 94  GNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPK-- 150

Query: 133 LYVIHKLKSLRVLD 146
             V  KL +L  LD
Sbjct: 151 -GVFDKLTNLTELD 163

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 22/114 (19%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRIT 77
             L L GN++  + N G  +       + L +N++  L +     L  L  L + +N++ 
Sbjct: 88  TYLILTGNQLQSLPN-GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP--------KLQFLSLLDN 123
            +   + + L  L  L L+ N+         L SLP        +L+ L L  N
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQ---------LQSLPEGVFDKLTQLKDLRLYQN 191

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 22/112 (19%)

Query: 45  DTIDLSDNEIVKLENMP--HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
             +DL  N +  L N     L  L  L +  N++  +   +   L  L  L L+ N+   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ--- 87

Query: 103 LVEIDPLTSLP--------KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                 L SLP        +L+ L+L  N +   P+    V  KL  L+ L 
Sbjct: 88  ------LQSLPNGVFDKLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLR 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 22  RELDLRGNKIAVIENL---GATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRI 76
           + L L  N+I  +E          +   + L  N++  L       L +L  L +  N++
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKE--LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVE-IDPLTSLPKLQFLSLLDNSITKKPN 130
           T +   + + L  L  L +  N+L  L   I+ LT    L  L+L  N +   P+
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT---HLTHLALDQNQLKSIPH 152

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 22/105 (20%)

Query: 48  DLSDNEIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
           +L  N++  L +     L +L  L ++ N+I  +   + + L KL  L L  N+      
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK------ 87

Query: 106 IDPLTSLP--------KLQFLSLLDNSITKKPNYRLYVIHKLKSL 142
              L SLP        +L+ L+L  N +   P+    +  +L SL
Sbjct: 88  ---LQSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSL 126

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 34/112 (30%)

Query: 46  TIDLSDNEIVK-------LENMPHLNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTN 97
            +DLS   + K       L N+P+LN L   I   N +   I P I + L +LH L +T+
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLY--IGGINNLVGPIPPAIAK-LTQLHYLYITH 110

Query: 98  NR-----------LVNLVEID----------P--LTSLPKLQFLSLLDNSIT 126
                        +  LV +D          P  ++SLP L  ++   N I+
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.53
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.53
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.33
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.84
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.84
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	82.25

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=9.7e-28  Score=212.46  Aligned_cols=207  Identities=16%  Similarity=0.142  Sum_probs=145.4

Q ss_pred             CCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcc-cCCCc-------
Q 023443           13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITR-INPNI-------   83 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~-~~~~~-------   83 (282)
                      +.++.+++|++|+|++|.|+.+|..+..+++|++|+|++|.++.+| .+..+++|++|++++|++.+ +|..+       
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            3455666677777777777666666666677777777777766665 56666677777776654433 43333       


Q ss_pred             -ccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443           84 -GEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE  162 (282)
Q Consensus        84 -~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~  162 (282)
                       +.++++|++|++++|.++.+|.  .++.+++|++|++++|.++.+|.    .+..+++|++|++++|..          
T Consensus       178 ~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~----------  241 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRGCTA----------  241 (328)
T ss_dssp             CEEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTTCTT----------
T ss_pred             hhccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcCCcc----------
Confidence             1236677777777777776665  56667777777777777776666    466677777777766542          


Q ss_pred             HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCC
Q 023443          163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDS  241 (282)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~  241 (282)
                                ...+|..+.      .+++|+.|++++|.+. .+|..+.++++|++|++++|.+ .|.+|.+++......
T Consensus       242 ----------~~~~p~~~~------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          242 ----------LRNYPPIFG------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPANC  304 (328)
T ss_dssp             ----------CCBCCCCTT------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCTTC
T ss_pred             ----------hhhhHHHhc------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccCce
Confidence                      334566666      7889999999998877 8999999999999999999988 799999999887777


Q ss_pred             CCCcccccCCC
Q 023443          242 GSKDVKENDEK  252 (282)
Q Consensus       242 ~~~~~~~~~~~  252 (282)
                      .+....+....
T Consensus       305 ~l~l~~~~~~~  315 (328)
T 4fcg_A          305 IILVPPHLQAQ  315 (328)
T ss_dssp             EEECCGGGSCC
T ss_pred             EEeCCHHHHHH
Confidence            66555444333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=5.1e-26  Score=196.04  Aligned_cols=201  Identities=19%  Similarity=0.174  Sum_probs=163.4

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      .+..+.+...+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++  .|..+++|++|++++|++++++
T Consensus        47 ~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  125 (272)
T 3rfs_A           47 IANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP  125 (272)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             eeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC
Confidence            345555666777888889999999999888775 5677889999999999988876  4788899999999999999888


Q ss_pred             CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccC
Q 023443           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFAS  160 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~  160 (282)
                      +..+..+++|++|++++|.++++++ ..++.+++|+.|++++|+++.++..   .+..+++|++|++++|++        
T Consensus       126 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l--------  193 (272)
T 3rfs_A          126 DGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEG---VFDKLTQLKDLRLYQNQL--------  193 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC--------
T ss_pred             HHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHH---HhcCCccCCEEECCCCcC--------
Confidence            8877788899999999999988887 4678888999999999999888774   457888999999988753        


Q ss_pred             hhHHHHHhhhccccccCC-CCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC
Q 023443          161 EEMEEEAKKESMKTLMPV-EVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY  239 (282)
Q Consensus       161 ~~~~~~~~~~~~~~~~p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~  239 (282)
                                   ..++. .+.      .+++|+.|++++|.+.      +.|++|+.+++..|.+ .|.||.+++....
T Consensus       194 -------------~~~~~~~~~------~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~-~g~ip~~~~~~~~  247 (272)
T 3rfs_A          194 -------------KSVPDGVFD------RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKH-SGVVRNSAGSVAP  247 (272)
T ss_dssp             -------------SCCCTTTTT------TCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHT-GGGBBCTTSCBCG
T ss_pred             -------------CccCHHHHh------CCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhC-CCcccCcccccCC
Confidence                         22233 334      7889999999999765      6688999999999999 7999999997765


Q ss_pred             CCC
Q 023443          240 DSG  242 (282)
Q Consensus       240 ~~~  242 (282)
                      ...
T Consensus       248 ~~~  250 (272)
T 3rfs_A          248 DSA  250 (272)
T ss_dssp             GGS
T ss_pred             CCC
Confidence            443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.91  E-value=4.3e-24  Score=172.20  Aligned_cols=152  Identities=57%  Similarity=0.896  Sum_probs=137.9

Q ss_pred             CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      |||++.+.+...+++.++++|+.|++++|.|+.+|......++|++|++++|.|++++.|..+++|++|++++|.|+++|
T Consensus         1 m~~lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~   80 (176)
T 1a9n_A            1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG   80 (176)
T ss_dssp             -CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred             CccccHHHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence            89999999999999999999999999999999997654444599999999999999999999999999999999999999


Q ss_pred             CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +.++..+++|++|++++|.|+.++.+..+..+++|+.|++++|+++.+|.++...+..+++|++||++++..
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            888789999999999999999988645788999999999999999999986555689999999999999544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.1e-25  Score=199.24  Aligned_cols=204  Identities=16%  Similarity=0.176  Sum_probs=176.0

Q ss_pred             CCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~   96 (282)
                      .++++.|+|++|.|+.+|..++.+++|++|+|++|.|+.+| .++.+++|++|++++|.++.+|+.+ ..+++|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEEECC
Confidence            47899999999999999988888999999999999999988 7899999999999999999887665 589999999999


Q ss_pred             CCcCCC-CCCCCCCC---------CCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443           97 NNRLVN-LVEIDPLT---------SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE  166 (282)
Q Consensus        97 ~N~l~~-~~~~~~~~---------~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~  166 (282)
                      +|.+.+ +|.  .+.         ++++|++|++++|.++.+|.    .++.+++|++|++++|.+              
T Consensus       159 ~n~~~~~~p~--~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l--------------  218 (328)
T 4fcg_A          159 ACPELTELPE--PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPL--------------  218 (328)
T ss_dssp             EETTCCCCCS--CSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCC--------------
T ss_pred             CCCCccccCh--hHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCC--------------
Confidence            976554 544  544         49999999999999999998    689999999999999763              


Q ss_pred             HhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCc
Q 023443          167 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKD  245 (282)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~  245 (282)
                             ..+|..+.      .+++|++|++++|.+. .+|..++.+++|++|++++|.+ .+.+|.+++.......++.
T Consensus       219 -------~~l~~~l~------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          219 -------SALGPAIH------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             -------CCCCGGGG------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCCEEEC
T ss_pred             -------CcCchhhc------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCCEEeC
Confidence                   22344444      7889999999998887 7889999999999999999988 7999999998888888888


Q ss_pred             ccccCCCCCCC
Q 023443          246 VKENDEKMVPD  256 (282)
Q Consensus       246 ~~~~~~~~~~~  256 (282)
                      ..++.-...++
T Consensus       285 ~~n~~~~~iP~  295 (328)
T 4fcg_A          285 RGCVNLSRLPS  295 (328)
T ss_dssp             TTCTTCCCCCG
T ss_pred             CCCCchhhccH
Confidence            88665444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=5.3e-25  Score=190.60  Aligned_cols=198  Identities=18%  Similarity=0.216  Sum_probs=118.6

Q ss_pred             CCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCc-CcccCCCcccCCccccEE
Q 023443           18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNR-ITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L   93 (282)
                      .++|++|++++|.|+.++ ..+..+++|++|++++|.++.+ + .|..+++|++|++++|. ++.+++..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            456777777777777666 4566677777777777777766 3 56677777777777775 676666666677777777


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-  170 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-  170 (282)
                      ++++|.++++++ ..+..+++|++|++++|.++.++..   .+..+++|++|++++|++...  ..|........+... 
T Consensus       111 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          111 HLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             ECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence            777777777655 4666777777777777777766653   356677777777776543110  001110000000000 


Q ss_pred             ccc-cccCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhh
Q 023443          171 SMK-TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       171 ~~~-~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l  225 (282)
                      +.. ...|..+.      .+++|+.|++++|+++.+| ..+..+++|+.|++++|.+
T Consensus       187 n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          187 NRVAHVHPHAFR------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             SCCCEECTTTTT------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CcccccCHhHcc------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            001 11233343      5566666666666666544 3466666666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=9.5e-25  Score=187.82  Aligned_cols=176  Identities=23%  Similarity=0.304  Sum_probs=131.9

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++++.|++++|.|+.++ ..|..+++|++|++++|.|+.++  .|..+++|++|++++|.++.+++..|..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            56888888888888777 46777888888888888888776  3677888888888888888888777777888888888


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTL  175 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (282)
                      ++|.++.+++ ..|..+++|++|++++|.++.++..   .+..+++|+.|++++|++                     ..
T Consensus       117 ~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l---------------------~~  171 (270)
T 2o6q_A          117 DRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQL---------------------KR  171 (270)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------SC
T ss_pred             CCCccCeeCH-HHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcC---------------------cE
Confidence            8888888776 4677888888888888888877764   457778888888887652                     12


Q ss_pred             cCC-CCCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhh
Q 023443          176 MPV-EVPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVL  225 (282)
Q Consensus       176 ~p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l  225 (282)
                      +|. .+.      .+++|+.|++++|+++.+|.. +..+++|+.|++++|.+
T Consensus       172 ~~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          172 VPEGAFD------KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCTTTTT------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             eChhHhc------cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            222 233      567777888888877766653 66777777777777776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.4e-25  Score=190.19  Aligned_cols=188  Identities=18%  Similarity=0.238  Sum_probs=164.1

Q ss_pred             cCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443           11 KSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (282)
Q Consensus        11 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L   90 (282)
                      .......+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++++++..+.++++|
T Consensus        33 ~~~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           33 DAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             SEECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            33445677899999999999998875 66799999999999999999889999999999999999999999988899999


Q ss_pred             cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh
Q 023443           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE  170 (282)
Q Consensus        91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~  170 (282)
                      ++|++++|.++++++ ..|+.+++|++|++++|.++.++..   .+..+++|++|++++|++                  
T Consensus       112 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l------------------  169 (272)
T 3rfs_A          112 KELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQL------------------  169 (272)
T ss_dssp             CEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC------------------
T ss_pred             CEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCc------------------
Confidence            999999999999987 5789999999999999999999875   468899999999999763                  


Q ss_pred             ccccccCCC-CCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCC
Q 023443          171 SMKTLMPVE-VPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLP  231 (282)
Q Consensus       171 ~~~~~~p~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP  231 (282)
                         ..++.. +.      .+++|+.|++++|+++.+|+. +..+++|+.|++++|.+ .+.+|
T Consensus       170 ---~~~~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~~~~~  222 (272)
T 3rfs_A          170 ---QSLPEGVFD------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-DCTCP  222 (272)
T ss_dssp             ---CCCCTTTTT------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-CCCTT
T ss_pred             ---CccCHHHhc------CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-cccCc
Confidence               223333 33      788999999999999977654 79999999999999999 57666

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=3.1e-25  Score=193.91  Aligned_cols=220  Identities=15%  Similarity=0.128  Sum_probs=140.0

Q ss_pred             CceeEEEecCCccccccc-cccCCCCCcEEeccCCCcccc---C-CCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKL---E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~i---~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      ++|++|++++|.|+.+|. .+..+++|++|++++|.++.+   + .+..+++|++|++++|.++.+++.+ ..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~-~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE-ETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc-CCCCCCCEE
Confidence            567777777777777773 456777777777777777654   2 4445677777777777777766553 467777777


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH---HHhccChhHHHHHhhh
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA---ASLFASEEMEEEAKKE  170 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~---~~~~~~~~~~~~~~~~  170 (282)
                      ++++|.+++++....+..+++|++|++++|.+..++..   .+..+++|++|++++|....   ...|........+...
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence            77777777665433566777777777777777655443   45667777777777755432   1112111111100000


Q ss_pred             -ccccc-cCCCCCCCcchhhcCCCeeeCCChhHHHHHHH-HhhcccChHHHHHHHHhhhCCCCCCCCCCCC-CCCCCCcc
Q 023443          171 -SMKTL-MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPADLKIPD-YDSGSKDV  246 (282)
Q Consensus       171 -~~~~~-~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~-~~~~~~~~  246 (282)
                       +.... .|..+.      .+++|+.|++++|+++.++. .+..+++|++|++++|.+ .+.+|..+.... ....++..
T Consensus       184 ~n~l~~~~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          184 QCQLEQLSPTAFN------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             TSCCCEECTTTTT------TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC-CBCSSSSCCCCCTTCCEEECT
T ss_pred             CCCcCCcCHHHhc------CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC-cccCHHHHHhhhccCCEEEcc
Confidence             11222 244454      77889999999999987664 678889999999999998 566677766653 44555555


Q ss_pred             ccc
Q 023443          247 KEN  249 (282)
Q Consensus       247 ~~~  249 (282)
                      .+.
T Consensus       257 ~N~  259 (306)
T 2z66_A          257 QND  259 (306)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=1e-24  Score=188.77  Aligned_cols=213  Identities=15%  Similarity=0.095  Sum_probs=153.8

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~   99 (282)
                      ++++.+++.++.+|..+  .++|++|++++|.|+.++  .|..+++|++|++++|.++++++..+.++++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            68999999999999654  579999999999999986  68999999999999999999988888899999999999997


Q ss_pred             -CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-ccccc
Q 023443          100 -LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-SMKTL  175 (282)
Q Consensus       100 -l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-~~~~~  175 (282)
                       ++.+++ ..+..+++|++|++++|.++.++..   .+..+++|++|++++|++...  ..|........+... +....
T Consensus        92 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           92 QLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             TCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CccccCH-HHhcCCcCCCEEECCCCcCCEECHh---HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence             998866 5899999999999999999988664   578899999999999764211  112111111100000 12222


Q ss_pred             cCCC-CCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCC-CCCCCCCCCCCcccc
Q 023443          176 MPVE-VPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPAD-LKIPDYDSGSKDVKE  248 (282)
Q Consensus       176 ~p~~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~-l~~~~~~~~~~~~~~  248 (282)
                      +|.. +.      .+++|+.|++++|+++.+ |..+..+++|+.|++++|.+  ..+|+. +........++...+
T Consensus       168 ~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          168 VPERAFR------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             ECTTTTT------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--SCCCHHHHTTCTTCCEEECCSS
T ss_pred             cCHHHhc------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC--CcCCHHHcccCcccCEEeccCC
Confidence            3332 33      566777777777777744 56677777777777777777  344432 444433344444333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=3.3e-24  Score=196.80  Aligned_cols=187  Identities=26%  Similarity=0.322  Sum_probs=106.4

Q ss_pred             CCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443           14 HFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L   90 (282)
                      .|.++++|++|+|++|.|+.++ ..|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.++.+++..|..+++|
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL  162 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence            4555555555555555555444 44555555555555555555553  35555555555555555555555555555555


Q ss_pred             cEEeccC-CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhh
Q 023443           91 HTLVLTN-NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKK  169 (282)
Q Consensus        91 ~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~  169 (282)
                      ++|++++ |.+..++. ..|.++++|++|++++|.++.+|.     +..+++|+.|++++|.+                 
T Consensus       163 ~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l-----------------  219 (440)
T 3zyj_A          163 RRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHL-----------------  219 (440)
T ss_dssp             CEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTSCC-----------------
T ss_pred             CEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCCcc-----------------
Confidence            5555555 33444443 345555555555555555555554     34555555555555432                 


Q ss_pred             hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443          170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                         ....|..+.      .+++|+.|+|++|+++.+ +.++..+++|++|++++|.+  ..+|...
T Consensus       220 ---~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~  274 (440)
T 3zyj_A          220 ---SAIRPGSFQ------GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL--TLLPHDL  274 (440)
T ss_dssp             ---CEECTTTTT------TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC--CCCCTTT
T ss_pred             ---CccChhhhc------cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC--CccChhH
Confidence               112244444      677788888888887754 34577778888888888877  4555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.3e-24  Score=187.64  Aligned_cols=176  Identities=20%  Similarity=0.212  Sum_probs=108.7

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      ++++.|++++|.|+.++ ..+..+++|++|+|++|.|+.++....+++|++|++++|+++.+|..+ ..+++|++|++++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT-TTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhh-ccCCCCCEEECCC
Confidence            45666666666666554 556666666666666666666654466666666666666666665433 4666666666666


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP  177 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (282)
                      |+|+.+++ ..|.++++|++|++++|+++.+|..   .|..+++|+.|++++|++                     ..+|
T Consensus       110 N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l---------------------~~l~  164 (290)
T 1p9a_G          110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNL---------------------TELP  164 (290)
T ss_dssp             SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCC---------------------SCCC
T ss_pred             CcCcccCH-HHHcCCCCCCEEECCCCCCCccChh---hcccccCCCEEECCCCcC---------------------CccC
Confidence            66666665 3566666666666666666666654   345666666666666542                     2233


Q ss_pred             CCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          178 VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       178 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      ..+.     ..+++|+.|+|++|+|+.+|..+..+.+|+.|++.+|.+
T Consensus       165 ~~~~-----~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          165 AGLL-----NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTTT-----TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             HHHh-----cCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            3322     245666666666666666666666666666555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.3e-24  Score=187.59  Aligned_cols=194  Identities=18%  Similarity=0.205  Sum_probs=167.7

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      .+.++++++.+++++|.|+.+|..+.  ++++.|+|++|.|+.++  .|..+++|++|++++|.|+.+++.  ..+++|+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            46788999999999999999997664  79999999999999874  789999999999999999999775  5899999


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES  171 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~  171 (282)
                      +|++++|.|+.+|.  .+..+++|++|++++|+++.++..   .|..+++|++|++++|++                   
T Consensus        81 ~L~Ls~N~l~~l~~--~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l-------------------  136 (290)
T 1p9a_G           81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNEL-------------------  136 (290)
T ss_dssp             EEECCSSCCSSCCC--CTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCC-------------------
T ss_pred             EEECCCCcCCcCch--hhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCC-------------------
Confidence            99999999999987  889999999999999999999875   578999999999999763                   


Q ss_pred             cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCC
Q 023443          172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK  244 (282)
Q Consensus       172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~  244 (282)
                        ..+|..+.     ..+++|+.|+|++|+|+.+|.. +..+++|+.|++++|.+  ..||..++.......++
T Consensus       137 --~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~  201 (290)
T 1p9a_G          137 --KTLPPGLL-----TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAF  201 (290)
T ss_dssp             --CCCCTTTT-----TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEE
T ss_pred             --CccChhhc-----ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEE
Confidence              23343332     2788999999999999998875 57899999999999999  79999988765444333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=5.8e-26  Score=199.67  Aligned_cols=126  Identities=20%  Similarity=0.301  Sum_probs=61.7

Q ss_pred             ceeEEEecCCccc---cccccccCCCCCcEEeccC-CCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           20 KERELDLRGNKIA---VIENLGATEDQFDTIDLSD-NEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        20 ~L~~L~Ls~N~l~---~ip~~~~~l~~L~~L~Ls~-N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      +++.|+|++|.++   .+|..+..+++|++|++++ |.+.+ +| .|+.+++|++|++++|.+++..+..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            4555555555554   3445555555555555552 44442 33 44555555555555555554333333455555555


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCC-CCcEecCccc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLK-SLRVLDFKKE  150 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~-~L~~L~ls~~  150 (282)
                      ++++|.+++..+ ..+..+++|++|++++|+++ .+|.    .++.++ +|++|++++|
T Consensus       131 ~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          131 DFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             ECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSS
T ss_pred             eCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCH----HHhhhhhcCcEEECcCC
Confidence            555555553222 24455555555555555554 3444    344444 5555555553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=3.6e-24  Score=197.21  Aligned_cols=204  Identities=23%  Similarity=0.243  Sum_probs=119.8

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      +++++|+|++|.|+.++ ..|..+++|++|+|++|.|+.++  .|.++++|++|+|++|.++.+++..|.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            45666677777666553 55666666777777776666653  5666666677777666666666666666666667777


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeC-CcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh-ccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE-SMK  173 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~-~~~  173 (282)
                      ++|.|+.+++ ..|..+++|+.|++++ |.+..++..   .+..+++|++|++++|.+.....+......+.+... +..
T Consensus       155 ~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          155 RNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcceeCH-hHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence            6666666665 3566666666666665 445555543   345566666666666443211111110000000000 111


Q ss_pred             -cccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443          174 -TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       174 -~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                       ...|..+.      .+++|+.|++++|+++.+ |..+..+++|++|++++|.+  ..+|...
T Consensus       231 ~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~  285 (452)
T 3zyi_A          231 PEIRPGSFH------GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL--SSLPHDL  285 (452)
T ss_dssp             SEECGGGGT------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--SCCCTTS
T ss_pred             cccCccccc------CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC--CccChHH
Confidence             11233344      677788888888887754 45677778888888888877  4555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=9.6e-25  Score=213.53  Aligned_cols=230  Identities=19%  Similarity=0.196  Sum_probs=165.2

Q ss_pred             CCCCCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443           12 SPHFFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~   88 (282)
                      |..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..|..+.+++
T Consensus       411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT  490 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence            445777788888888888887 667777888888888888888874 45 677888888888888888876676677888


Q ss_pred             cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHH---HHHhccChhH-
Q 023443           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERME---AASLFASEEM-  163 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~---~~~~~~~~~~-  163 (282)
                      +|++|++++|++++..+ ..++.+++|++|++++|+++ .+|.    .++.+++|++|++++|...   +..+|..... 
T Consensus       491 ~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPA----ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             TCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             CCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            89999999998885544 37888899999999999988 5666    6888999999999886542   1122211000 


Q ss_pred             ------------------------------------HHH-----------------------------Hhhh-----ccc
Q 023443          164 ------------------------------------EEE-----------------------------AKKE-----SMK  173 (282)
Q Consensus       164 ------------------------------------~~~-----------------------------~~~~-----~~~  173 (282)
                                                          ...                             +..+     ...
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence                                                000                             0000     001


Q ss_pred             cccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCC
Q 023443          174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEK  252 (282)
Q Consensus       174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~  252 (282)
                      ..+|.++      +.++.|+.|+|++|+++ .||..|+++++|+.|++++|++ +|.||..+........++...++...
T Consensus       646 g~ip~~l------~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          646 GYIPKEI------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             SCCCGGG------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             ccCCHHH------hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc-cCcCChHHhCCCCCCEEECcCCcccc
Confidence            1233333      37778888888888887 7888888888888888888888 67888888877777778887777543


Q ss_pred             C
Q 023443          253 M  253 (282)
Q Consensus       253 ~  253 (282)
                      .
T Consensus       719 ~  719 (768)
T 3rgz_A          719 P  719 (768)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2.8e-24  Score=185.18  Aligned_cols=201  Identities=19%  Similarity=0.212  Sum_probs=156.3

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++|++|++++|.|+.++ ..+..+++|++|++++|.++.++  .|..+++|++|++++|.++++++..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999999888 48889999999999999999886  6899999999999999999999888889999999999


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHh-hh
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAK-KE  170 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~-~~  170 (282)
                      ++|.++.+++ ..++.+++|++|++++|.++.  +|.    .+..+++|++|++++|++...  ..|........+. .+
T Consensus       108 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             CCCCccccCc-hhcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            9999999887 478999999999999999987  566    688999999999999754221  1111111000000 01


Q ss_pred             ----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCC
Q 023443          171 ----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLP  231 (282)
Q Consensus       171 ----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP  231 (282)
                          +....++....      ...+|+.|++++|+++.+|.. +.++++|+.|++++|.+ .+..|
T Consensus       183 ~ls~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~c~  241 (276)
T 2z62_A          183 DLSLNPMNFIQPGAF------KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW-DCSCP  241 (276)
T ss_dssp             ECCSSCCCEECTTSS------CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB-CCCTT
T ss_pred             ecCCCcccccCcccc------CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc-cccCC
Confidence                22233444433      344788888888888877765 57888888888888888 45443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=4.7e-25  Score=215.71  Aligned_cols=222  Identities=19%  Similarity=0.186  Sum_probs=174.0

Q ss_pred             cCHHHHh--cCCCCCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcc
Q 023443            4 LTADLIW--KSPHFFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITR   78 (282)
Q Consensus         4 l~~~~i~--~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~   78 (282)
                      ++.+.+.  .|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++
T Consensus       425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  504 (768)
T 3rgz_A          425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG  504 (768)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence            4444443  2556889999999999999999 788999999999999999999996 46 78999999999999999998


Q ss_pred             cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHH-----------------------
Q 023443           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLY-----------------------  134 (282)
Q Consensus        79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~-----------------------  134 (282)
                      ..|..+..+++|++|++++|.+++..+ ..++.+++|++|++++|+++ .+|...+.                       
T Consensus       505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (768)
T 3rgz_A          505 EIPKWIGRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM  583 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred             cCChHHhcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence            777777799999999999999996554 48999999999999999987 66653210                       


Q ss_pred             -------------------------------------------HHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhh
Q 023443          135 -------------------------------------------VIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKK  169 (282)
Q Consensus       135 -------------------------------------------~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~  169 (282)
                                                                 .+..+++|++||+++|++...  ..+........+..
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L  663 (768)
T 3rgz_A          584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL  663 (768)
T ss_dssp             CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence                                                       123356788999999764321  11222111111110


Q ss_pred             h-c-cccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCC
Q 023443          170 E-S-MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPAD  233 (282)
Q Consensus       170 ~-~-~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~  233 (282)
                      . + ....+|..+.      .+++|+.|+|++|+++ .||..++++++|++|++++|++ +|.||..
T Consensus       664 s~N~l~g~ip~~l~------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l-~g~iP~~  723 (768)
T 3rgz_A          664 GHNDISGSIPDEVG------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL-SGPIPEM  723 (768)
T ss_dssp             CSSCCCSCCCGGGG------GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE-EEECCSS
T ss_pred             cCCccCCCCChHHh------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc-cccCCCc
Confidence            0 2 2234666666      8999999999999999 8999999999999999999999 8999975

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.6e-25  Score=195.49  Aligned_cols=222  Identities=16%  Similarity=0.191  Sum_probs=161.7

Q ss_pred             CCCCCCCCceeEEEecC-Cccc-cccccccCCCCCcEEeccCCCcc-ccC-CCCCCCccCeEeccCCcCcccCCCcccCC
Q 023443           12 SPHFFNAIKERELDLRG-NKIA-VIENLGATEDQFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFL   87 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~-N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l   87 (282)
                      |..|.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+| .|..+++|++|++++|.+++..+..+..+
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            56788899999999995 8887 78888889999999999999998 456 68889999999999999997666666789


Q ss_pred             ccccEEeccCCcCC-CCCCCCCCCCCC-CccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChh
Q 023443           88 PKLHTLVLTNNRLV-NLVEIDPLTSLP-KLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEE  162 (282)
Q Consensus        88 ~~L~~L~L~~N~l~-~~~~~~~~~~l~-~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~  162 (282)
                      ++|++|++++|.++ .+|.  .+..++ +|++|++++|+++ .+|.    .+..++ |++|++++|++..  ...|....
T Consensus       149 ~~L~~L~L~~N~l~~~~p~--~l~~l~~~L~~L~L~~N~l~~~~~~----~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPP----TFANLN-LAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             TTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEEEECCG----GGGGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred             CCCCeEECcCCcccCcCCH--HHhhhhhcCcEEECcCCeeeccCCh----HHhCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence            99999999999998 4554  788887 8999999999998 5565    567776 9999998865421  12222211


Q ss_pred             HHHHHhhh-ccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCC
Q 023443          163 MEEEAKKE-SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYD  240 (282)
Q Consensus       163 ~~~~~~~~-~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~  240 (282)
                      ..+.+... +.....+..+.      .+++|++|+|++|+++ .+|.++..+++|++|++++|.+ +|.+|.. +.....
T Consensus       222 ~L~~L~L~~N~l~~~~~~~~------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~ip~~-~~l~~L  293 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGKVG------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQG-GNLQRF  293 (313)
T ss_dssp             CCSEEECCSSEECCBGGGCC------CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE-EEECCCS-TTGGGS
T ss_pred             CCCEEECCCCceeeecCccc------ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc-cccCCCC-cccccc
Confidence            11111000 11121222233      5778888999998888 7888888888898899888888 6778875 443344


Q ss_pred             CCCCcccc
Q 023443          241 SGSKDVKE  248 (282)
Q Consensus       241 ~~~~~~~~  248 (282)
                      ..++...+
T Consensus       294 ~~l~l~~N  301 (313)
T 1ogq_A          294 DVSAYANN  301 (313)
T ss_dssp             CGGGTCSS
T ss_pred             ChHHhcCC
Confidence            44444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.4e-22  Score=165.10  Aligned_cols=178  Identities=17%  Similarity=0.179  Sum_probs=149.8

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~   99 (282)
                      +.++.+++.++.+|..+  .++|++|++++|.++.++  .|..+++|++|++++|+++.+++..|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            57888999999998655  468999999999999886  47889999999999999999998888889999999999999


Q ss_pred             CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCCC
Q 023443          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVE  179 (282)
Q Consensus       100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  179 (282)
                      ++.+++ ..|..+++|++|++++|.++.++..   .+..+++|++|++++|++                     ..+|..
T Consensus        88 l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l---------------------~~~~~~  142 (208)
T 2o6s_A           88 LQSLPN-GVFDKLTQLKELALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQL---------------------KSVPDG  142 (208)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------SCCCTT
T ss_pred             CCccCH-hHhcCccCCCEEEcCCCcCcccCHh---HhccCCcCCEEECCCCcc---------------------ceeCHH
Confidence            999887 4688999999999999999988875   467899999999998763                     223333


Q ss_pred             -CCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC
Q 023443          180 -VPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY  239 (282)
Q Consensus       180 -~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~  239 (282)
                       +.      .+++|+.|++++|.+      .+.+++|+.|++..|.+ .|.||.+++....
T Consensus       143 ~~~------~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~-~g~ip~~~~~l~~  190 (208)
T 2o6s_A          143 VFD------RLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKH-SGVVRNSAGSVAP  190 (208)
T ss_dssp             TTT------TCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHC-TTTBBCTTSSBCT
T ss_pred             Hhc------cCCCccEEEecCCCe------ecCCCCHHHHHHHHHhC-CceeeccCccccC
Confidence             33      678999999999954      36788999999999999 7999999886544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.1e-23  Score=181.23  Aligned_cols=196  Identities=19%  Similarity=0.226  Sum_probs=165.8

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~   96 (282)
                      ...+.++++++.++.+|..+.  ++++.|++++|.|+.++  .|..+++|++|++++|.++.+++.+|.++++|++|+++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            357899999999999997653  68999999999999986  69999999999999999999999998899999999999


Q ss_pred             CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM  176 (282)
Q Consensus        97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (282)
                      +|.++.+++ ..|..+++|++|++++|.++.++..   .|..+++|++|++++|++                     ..+
T Consensus        94 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l---------------------~~~  148 (270)
T 2o6q_A           94 DNKLQALPI-GVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYLSLGYNEL---------------------QSL  148 (270)
T ss_dssp             SSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------CCC
T ss_pred             CCcCCcCCH-hHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEEECCCCcC---------------------Ccc
Confidence            999999987 5789999999999999999999875   568999999999999763                     223


Q ss_pred             CCC-CCCCcchhhcCCCeeeCCChhHHHHHHH-HhhcccChHHHHHHHHhhhCCCCCCC-CCCCCCCCCCCccccc
Q 023443          177 PVE-VPNVSEEEEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPAD-LKIPDYDSGSKDVKEN  249 (282)
Q Consensus       177 p~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~iP~~-l~~~~~~~~~~~~~~~  249 (282)
                      |.. +.      .+++|+.|++++|+++.+|+ .+..+++|++|++++|.+  ..+|+. +........++...+.
T Consensus       149 ~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          149 PKGVFD------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CTTTTT------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC--SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CHhHcc------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC--CcCCHHHhccccCCCEEEecCCC
Confidence            433 34      78899999999999998876 488999999999999999  567765 4444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=2.9e-24  Score=189.74  Aligned_cols=126  Identities=20%  Similarity=0.286  Sum_probs=75.8

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      +++++|++++|.|+.++ ..+..+++|++|++++|.++.+ | .|..+++|++|++++|.++.+|..++   ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence            45666677777666665 3566666677777777766665 3 56666666777776666666655543   45666666


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccH
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      ++|.++.+++ ..+.++++|+.|++++|.+..  +...   .+..+++|++|+++++.
T Consensus       129 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          129 HENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENG---AFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTT---GGGGCTTCCEEECCSSC
T ss_pred             CCCcccccCH-hHhcCCccccEEECCCCcCCccCcChh---hccCCCCcCEEECCCCc
Confidence            6666665554 345556666666666666542  2221   34555566666555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=6.4e-25  Score=195.83  Aligned_cols=226  Identities=15%  Similarity=0.104  Sum_probs=126.9

Q ss_pred             CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCC-CcccCCccc
Q 023443           15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP-NIGEFLPKL   90 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L   90 (282)
                      |.++++|++|++++|.|+.++ ..+..+++|++|++++|.|+.++  .|..+++|++|++++|+++.++. ..+..+++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence            555666666666666666543 44555666666666666666554  25556666666666666666555 444556666


Q ss_pred             cEEeccCC-cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChhHHHHH
Q 023443           91 HTLVLTNN-RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEEMEEEA  167 (282)
Q Consensus        91 ~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~~~~~~  167 (282)
                      ++|++++| .++.+++ ..|.++++|+.|++++|.++.++..   .+..+++|++|++++|+...  ..++...   ..+
T Consensus       152 ~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L  224 (353)
T 2z80_A          152 QILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLEIFVDVT---SSV  224 (353)
T ss_dssp             CEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHHHHHHHT---TTE
T ss_pred             cEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchhhhhhhc---ccc
Confidence            66666665 3555544 3556666666666666666654322   45566666666666644211  1111000   000


Q ss_pred             hhh----ccccccC-CCCCCCc--chhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC-CCCCC
Q 023443          168 KKE----SMKTLMP-VEVPNVS--EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL-KIPDY  239 (282)
Q Consensus       168 ~~~----~~~~~~p-~~~~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l-~~~~~  239 (282)
                      ..+    +.....+ ..+....  ..-....++.+.++++.+..+|.++..+++|++|++++|.+  ..||.++ .....
T Consensus       225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l--~~i~~~~~~~l~~  302 (353)
T 2z80_A          225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL--KSVPDGIFDRLTS  302 (353)
T ss_dssp             EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC--CCCCTTTTTTCTT
T ss_pred             cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC--CccCHHHHhcCCC
Confidence            011    1111111 1110000  00012246667788888899999999999999999999999  6899886 45555


Q ss_pred             CCCCCccccc
Q 023443          240 DSGSKDVKEN  249 (282)
Q Consensus       240 ~~~~~~~~~~  249 (282)
                      ...++...+.
T Consensus       303 L~~L~L~~N~  312 (353)
T 2z80_A          303 LQKIWLHTNP  312 (353)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEeeCCC
Confidence            5556555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=5.9e-25  Score=209.32  Aligned_cols=114  Identities=24%  Similarity=0.262  Sum_probs=70.8

Q ss_pred             CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      |.++++|++|+|++|.|+.++ ..|..+++|++|+|++|.|++++  .|+++++|++|+|++|.++.+|+.+|.++++|+
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            345566666666666666555 35666666666666666666654  356666666666666666666666655666666


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccC
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP  129 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip  129 (282)
                      +|++++|.++++++ ..|+.+++|++|++++|.++.++
T Consensus       151 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          151 TLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             EEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC
T ss_pred             EEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC
Confidence            66666666666655 35666666666666666665543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=1.1e-23  Score=193.89  Aligned_cols=221  Identities=17%  Similarity=0.129  Sum_probs=173.2

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      ..+.++.+++.++.+|..+.  +++++|+|++|.|+.++  .|.++++|++|+|++|.|+++++..|.++++|++|+|++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            45789999999999997653  79999999999999984  799999999999999999999999899999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHH---HHHhccChhHHHHHhhh-ccc
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERME---AASLFASEEMEEEAKKE-SMK  173 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~---~~~~~~~~~~~~~~~~~-~~~  173 (282)
                      |.|+.+++ ..|..+++|++|+|++|+++.++..   .|..+++|+.|+++++...   ....|......+.+... +..
T Consensus       133 n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          133 NWLTVIPS-GAFEYLSKLRELWLRNNPIESIPSY---AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             SCCSBCCT-TTSSSCTTCCEEECCSCCCCEECTT---TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CcCCccCh-hhhcccCCCCEEECCCCCcceeCHh---HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            99999987 5799999999999999999999886   5789999999999983211   11122222211111100 222


Q ss_pred             cccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCC
Q 023443          174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEK  252 (282)
Q Consensus       174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~  252 (282)
                      ..+| .+      ..+++|+.|+|++|+++.+ |..|..+++|+.|++++|.+ .+..|..+........++...+....
T Consensus       209 ~~~~-~~------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          209 KDMP-NL------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             SSCC-CC------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cccc-cc------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC-ceECHHHhcCCCCCCEEECCCCcCCc
Confidence            2233 23      3788999999999999965 67899999999999999999 45556667666666777777666544


Q ss_pred             CC
Q 023443          253 MV  254 (282)
Q Consensus       253 ~~  254 (282)
                      .+
T Consensus       281 ~~  282 (452)
T 3zyi_A          281 LP  282 (452)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=1.9e-25  Score=201.78  Aligned_cols=113  Identities=24%  Similarity=0.266  Sum_probs=62.2

Q ss_pred             CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      |.++++|++|++++|.|+.++ ..+..+++|++|++++|.++.++  .|+.+++|++|++++|.++.+|+.+|.++++|+
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            344555555555555555544 35555555555555555555553  345555555555555555555555555555555


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCcc
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK  128 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~i  128 (282)
                      +|++++|.++.+++ ..+..+++|++|++++|.++.+
T Consensus       145 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          145 TLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             EEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBC
T ss_pred             EEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcc
Confidence            55555555555544 3455555555555555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=3.1e-24  Score=188.26  Aligned_cols=185  Identities=19%  Similarity=0.240  Sum_probs=107.8

Q ss_pred             HHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCC
Q 023443            8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFL   87 (282)
Q Consensus         8 ~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l   87 (282)
                      .+...+.+..+++|++|++++|.|+.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++++++  +..+
T Consensus        52 ~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l  128 (308)
T 1h6u_A           52 GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGL  128 (308)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTC
T ss_pred             CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCC
Confidence            33334445555555555555555555544 44555555555555555555555555555555555555555433  3355


Q ss_pred             ccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHH
Q 023443           88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEA  167 (282)
Q Consensus        88 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~  167 (282)
                      ++|++|++++|.++++++   +..+++|+.|++++|.++.++.     +..+++|+.|++++|++               
T Consensus       129 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l---------------  185 (308)
T 1h6u_A          129 SNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKI---------------  185 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCC---------------
T ss_pred             CCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCcc---------------
Confidence            555555555555555442   4445555555555555555443     34555555555555432               


Q ss_pred             hhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443          168 KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       168 ~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                            ..++. +      ..+++|+.|++++|+++.++ .+..+++|+.|++++|.+  ..+|..+
T Consensus       186 ------~~~~~-l------~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i--~~~~~~~  236 (308)
T 1h6u_A          186 ------SDISP-L------ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI--TNQPVFY  236 (308)
T ss_dssp             ------CCCGG-G------GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE--ECCCEEC
T ss_pred             ------CcChh-h------cCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee--ecCCeee
Confidence                  11111 2      36788999999999999777 488999999999999999  4455443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=1.1e-23  Score=193.36  Aligned_cols=203  Identities=20%  Similarity=0.217  Sum_probs=145.9

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++++.|+|++|+|+.++ ..|..+++|++|+|++|.|+.++  .|.++++|++|+|++|+++.+++..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            45777777777777665 56677777777777777777664  5677777777777777777777766667777777777


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeC-CcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT  174 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (282)
                      ++|.|+.+++ ..|..+++|+.|++++ |.+..++..   .|..+++|++|++++|.+                     .
T Consensus       144 ~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l---------------------~  198 (440)
T 3zyj_A          144 RNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNL---------------------R  198 (440)
T ss_dssp             CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCC---------------------S
T ss_pred             CCCcccccCH-HHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcC---------------------c
Confidence            7777777766 4677777777777776 455566654   456777777777777542                     2


Q ss_pred             ccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCCC
Q 023443          175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKM  253 (282)
Q Consensus       175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~  253 (282)
                      .+|. +.      .+++|+.|+|++|+++.+ |..|..+++|+.|++++|.+ .+..|..+........++...++....
T Consensus       199 ~~~~-~~------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          199 EIPN-LT------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             SCCC-CT------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             cccc-cC------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCce-eEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            2332 33      688999999999999966 67899999999999999999 444455666666666666666665443


Q ss_pred             C
Q 023443          254 V  254 (282)
Q Consensus       254 ~  254 (282)
                      +
T Consensus       271 ~  271 (440)
T 3zyj_A          271 P  271 (440)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=1.4e-23  Score=185.61  Aligned_cols=124  Identities=22%  Similarity=0.323  Sum_probs=74.4

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++|++|++++|.|+.++ ..+..+++|++|++++|.|+.+ | .|..+++|++|++++|.++.+|+.++   ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence            45666666666666554 4566666666666666666665 3 56666666666666666666665543   56666666


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKE  150 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~  150 (282)
                      ++|.++.+++ ..|.++++|+.|++++|.++.  +...   .+..+ +|++|++++|
T Consensus       131 ~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          131 HDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPG---AFDGL-KLNYLRISEA  182 (332)
T ss_dssp             CSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTT---SSCSC-CCSCCBCCSS
T ss_pred             CCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcc---cccCC-ccCEEECcCC
Confidence            6666666655 346666666666666666642  2221   23333 5555555553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=7.4e-24  Score=182.56  Aligned_cols=213  Identities=17%  Similarity=0.148  Sum_probs=153.2

Q ss_pred             EEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcC
Q 023443           23 ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL  100 (282)
Q Consensus        23 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  100 (282)
                      .++.++..+..+|..+.  ++|++|++++|.|+.++  .|..+++|++|++++|.++.+++..+.++++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            56778888889997653  68999999999999986  789999999999999999999998888999999999999999


Q ss_pred             CCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH---HHhccChhHHHHHhhh-cccccc
Q 023443          101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA---ASLFASEEMEEEAKKE-SMKTLM  176 (282)
Q Consensus       101 ~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~  176 (282)
                      +++++ ..|.++++|++|++++|.++.++..   .+..+++|++|++++|.+..   ...|......+.+... +....+
T Consensus        89 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           89 QSLAL-GAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CEECT-TTTTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CccCh-hhhcCCccccEEECCCCCccccCch---hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            99886 5899999999999999999988775   47899999999999976432   1112111111000000 111111


Q ss_pred             C-CCCCCCcchhhcCCCe----eeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC-CCCCCCCCCCccccc
Q 023443          177 P-VEVPNVSEEEEQQTPK----VVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL-KIPDYDSGSKDVKEN  249 (282)
Q Consensus       177 p-~~~~~~~~~~~l~~L~----~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l-~~~~~~~~~~~~~~~  249 (282)
                      + ..+      ..+.+++    .+++++|+++.+|.......+|++|++++|.+  ..+|+.+ ........++...+.
T Consensus       165 ~~~~~------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          165 YCTDL------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CGGGG------HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCC--SCCCTTTTTTCCSCCEEECCSSC
T ss_pred             CHHHh------hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCce--eecCHhHhcccccccEEEccCCc
Confidence            1 111      2344444    67777777777766666666788888888888  5666654 334444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=8e-24  Score=201.49  Aligned_cols=215  Identities=19%  Similarity=0.175  Sum_probs=156.5

Q ss_pred             ccCHHHHhcC--CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCc
Q 023443            3 RLTADLIWKS--PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT   77 (282)
Q Consensus         3 ~l~~~~i~~~--~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~   77 (282)
                      .|+.+.+...  ..|.++++|++|+|++|.|+.+| ..|+.+++|++|+|++|.|+.+|  .|+.+++|++|+|++|.++
T Consensus        81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~  160 (597)
T 3oja_B           81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE  160 (597)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence            3444444443  37889999999999999999877 56789999999999999999987  3789999999999999999


Q ss_pred             ccCCCcccCCccccEEeccCCcCCCCCCCCCCCCC-------------------------------------CCccEEEe
Q 023443           78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL-------------------------------------PKLQFLSL  120 (282)
Q Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-------------------------------------~~L~~L~L  120 (282)
                      ++++..+.++++|++|++++|.+++++. ..+..+                                     ++|+.|++
T Consensus       161 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L  239 (597)
T 3oja_B          161 RIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL  239 (597)
T ss_dssp             BCCTTTTTTCTTCCEEECTTSCCSBCCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEEC
T ss_pred             CCChhhhhcCCcCcEEECcCCCCCCcCh-hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEEC
Confidence            9999888899999999999999887653 222221                                     23555555


Q ss_pred             eCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-ccccccCCCCCCCcchhhcCCCeeeCC
Q 023443          121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-SMKTLMPVEVPNVSEEEEQQTPKVVAP  197 (282)
Q Consensus       121 ~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~l~~L~~L~L  197 (282)
                      ++|.++.++     .+..+++|+.|++++|.+...  ..|........+... +....+|..+.      .+++|+.|+|
T Consensus       240 ~~n~l~~~~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~------~l~~L~~L~L  308 (597)
T 3oja_B          240 QHNNLTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ------PIPTLKVLDL  308 (597)
T ss_dssp             CSSCCCCCG-----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSS------CCTTCCEEEC
T ss_pred             CCCCCCCCh-----hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccc------cCCCCcEEEC
Confidence            555555442     367788888888888654221  122221111111100 22333444444      6789999999


Q ss_pred             ChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCC
Q 023443          198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP  231 (282)
Q Consensus       198 s~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP  231 (282)
                      ++|.++.+|..+..+++|+.|++++|.+  ..+|
T Consensus       309 s~N~l~~i~~~~~~l~~L~~L~L~~N~l--~~~~  340 (597)
T 3oja_B          309 SHNHLLHVERNQPQFDRLENLYLDHNSI--VTLK  340 (597)
T ss_dssp             CSSCCCCCGGGHHHHTTCSEEECCSSCC--CCCC
T ss_pred             CCCCCCccCcccccCCCCCEEECCCCCC--CCcC
Confidence            9999999999999999999999999999  5555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.3e-23  Score=177.28  Aligned_cols=155  Identities=22%  Similarity=0.297  Sum_probs=115.1

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++++.|+|++|.|+.++ ..+..+++|++|+|++|.|+.++  .|..+++|++|++++|.++.+++..|..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            56788888888888665 46777888888888888888764  4777888888888888888887777777888888888


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTL  175 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (282)
                      ++|.|+.+++ ..|..+++|++|+|++|.++.++..   .+..+++|++|++++|++                     ..
T Consensus       115 ~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l---------------------~~  169 (251)
T 3m19_A          115 GGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQL---------------------QS  169 (251)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------SC
T ss_pred             CCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcC---------------------Cc
Confidence            8888887776 4567788888888888888877764   467778888888887653                     12


Q ss_pred             cC-CCCCCCcchhhcCCCeeeCCChhHHHH
Q 023443          176 MP-VEVPNVSEEEEQQTPKVVAPTPEQIIA  204 (282)
Q Consensus       176 ~p-~~~~~~~~~~~l~~L~~L~Ls~N~l~~  204 (282)
                      +| ..+.      .+++|+.+++++|.+++
T Consensus       170 ~~~~~~~------~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          170 VPHGAFD------RLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCTTTTT------TCTTCCEEECCSCCBCT
T ss_pred             cCHHHHh------CCCCCCEEEeeCCceeC
Confidence            22 2333      66778888888887753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=4e-24  Score=197.90  Aligned_cols=135  Identities=22%  Similarity=0.267  Sum_probs=100.7

Q ss_pred             CCCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443           13 PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~   89 (282)
                      ..|.++++|++|+|++|.|+.+ |..|..+++|++|+|++|.++.+|  .|.++++|++|+|++|.++.+++..+..+++
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            4577777777777777777765 467777777888888777777775  4677777788888777777777776777777


Q ss_pred             ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      |++|++++|.++.+++ ..|.++++|+.|++++|.++.++..   .+..+++|+.|+++++.
T Consensus       130 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          130 LKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             CCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEESCC
T ss_pred             CCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCCCCc
Confidence            8888888777777665 4777777888888888887777754   46777777777777744

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=3.3e-23  Score=187.04  Aligned_cols=230  Identities=18%  Similarity=0.155  Sum_probs=162.6

Q ss_pred             cCHHHHhcC--CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443            4 LTADLIWKS--PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (282)
Q Consensus         4 l~~~~i~~~--~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~   78 (282)
                      ++.+.+...  ..|..+++|++|++++|.++.++ ..+..+++|++|++++|.++.+|  .|..+++|++|++++|.+++
T Consensus        76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            444444432  46889999999999999999876 66889999999999999999987  36899999999999999999


Q ss_pred             cCCCcccCCccccEEeccCCcCCCCCCCCCCCCC-------------------------------------CCccEEEee
Q 023443           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL-------------------------------------PKLQFLSLL  121 (282)
Q Consensus        79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-------------------------------------~~L~~L~L~  121 (282)
                      +++..+..+++|++|++++|.++.++. ..+..+                                     ++|+.|+++
T Consensus       156 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  234 (390)
T 3o6n_A          156 IEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ  234 (390)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCSBCCG-GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECC
T ss_pred             cChhhccCCCCCCEEECCCCcCCcccc-ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECC
Confidence            988888899999999999999887642 222221                                     245555666


Q ss_pred             CCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-ccccccCCCCCCCcchhhcCCCeeeCCC
Q 023443          122 DNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-SMKTLMPVEVPNVSEEEEQQTPKVVAPT  198 (282)
Q Consensus       122 ~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~l~~L~~L~Ls  198 (282)
                      +|.++.++     .+..+++|+.|++++|.+...  ..|......+.+... +....+|..+.      .+++|+.|+++
T Consensus       235 ~n~l~~~~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~l~~L~~L~L~  303 (390)
T 3o6n_A          235 HNNLTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ------PIPTLKVLDLS  303 (390)
T ss_dssp             SSCCCCCG-----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS------CCTTCCEEECC
T ss_pred             CCCCcccH-----HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC------CCCCCCEEECC
Confidence            66665543     367788888888888654221  122221111111000 22233444443      67899999999


Q ss_pred             hhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCccccc
Q 023443          199 PEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEN  249 (282)
Q Consensus       199 ~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~  249 (282)
                      +|+++.+|..+..+++|++|++++|.+  ..+|  +........++...+.
T Consensus       304 ~n~l~~~~~~~~~l~~L~~L~L~~N~i--~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          304 HNHLLHVERNQPQFDRLENLYLDHNSI--VTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             SSCCCCCGGGHHHHTTCSEEECCSSCC--CCCC--CCTTCCCSEEECCSSC
T ss_pred             CCcceecCccccccCcCCEEECCCCcc--ceeC--chhhccCCEEEcCCCC
Confidence            999999999999999999999999999  5665  3344444445544443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.2e-23  Score=177.59  Aligned_cols=181  Identities=19%  Similarity=0.191  Sum_probs=157.4

Q ss_pred             CCceeEEEecCCcccccc-ccccCCCCCcEEeccCCC-ccccC--CCCCCCccCeEeccC-CcCcccCCCcccCCccccE
Q 023443           18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNE-IVKLE--NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHT   92 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~-l~~i~--~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~   92 (282)
                      .++|++|++++|+|+.+| ..|..+++|++|++++|. ++.++  .|..+++|++|++++ |.++.+++..|.++++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            348999999999999998 488899999999999997 99986  688999999999998 9999999988889999999


Q ss_pred             EeccCCcCCCCCCCCCCCCCCCcc---EEEeeCC-cCCccCCchHHHHhhCCCCc-EecCcccHHHHHHhccChhHHHHH
Q 023443           93 LVLTNNRLVNLVEIDPLTSLPKLQ---FLSLLDN-SITKKPNYRLYVIHKLKSLR-VLDFKKERMEAASLFASEEMEEEA  167 (282)
Q Consensus        93 L~L~~N~l~~~~~~~~~~~l~~L~---~L~L~~N-~l~~ip~~~~~~l~~l~~L~-~L~ls~~~~~~~~~~~~~~~~~~~  167 (282)
                      |++++|.++++|.   +..+++|+   +|++++| .++.++..   .|..+++|+ .|++++|++               
T Consensus       110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l---------------  168 (239)
T 2xwt_C          110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGF---------------  168 (239)
T ss_dssp             EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCC---------------
T ss_pred             EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCC---------------
Confidence            9999999999874   77777777   9999999 99999886   578899999 999998763               


Q ss_pred             hhhccccccCCCCCCCcchhhcCCCeeeCCChhH-HHHHH-HHhhcc-cChHHHHHHHHhhhCCCCCCC
Q 023443          168 KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQ-IIAIK-AAIVNS-QTLEEVARLEKVLKSGQLPAD  233 (282)
Q Consensus       168 ~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip-~~l~~~-~~L~~L~l~~N~l~~g~iP~~  233 (282)
                            ..+|....      ...+|+.|++++|+ ++.+| ..+..+ ++|++|++++|.+  ..+|..
T Consensus       169 ------~~i~~~~~------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--~~l~~~  223 (239)
T 2xwt_C          169 ------TSVQGYAF------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSK  223 (239)
T ss_dssp             ------CEECTTTT------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC--CCCCCT
T ss_pred             ------cccCHhhc------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc--ccCChh
Confidence                  23454444      33689999999995 99886 457888 9999999999999  678876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=5.9e-24  Score=203.86  Aligned_cols=240  Identities=11%  Similarity=0.081  Sum_probs=171.0

Q ss_pred             ccCHHHHhcCCC---CCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCCCccccC-CCCCCCc-cCeEeccCCcC
Q 023443            3 RLTADLIWKSPH---FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNR-LGTLIINNNRI   76 (282)
Q Consensus         3 ~l~~~~i~~~~~---~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~-L~~L~L~~N~l   76 (282)
                      .++.+.+...+.   +.++++|++|++++|.++ .+| .+..+++|++|++++|.++.+| .+..+++ |++|++++|.+
T Consensus       311 ~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             ECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence            344455555444   888999999999999999 888 8888899999999999999887 7888888 99999999999


Q ss_pred             cccCCCcccCC--ccccEEeccCCcCCCCCCCCCCC-------CCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecC
Q 023443           77 TRINPNIGEFL--PKLHTLVLTNNRLVNLVEIDPLT-------SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF  147 (282)
Q Consensus        77 ~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~-------~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l  147 (282)
                      +.+|..+ ..+  ++|++|++++|.+++..+ ..+.       .+++|++|++++|.++.+|..   .+..+++|++|++
T Consensus       390 ~~lp~~~-~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~~l~~L~~L~L  464 (636)
T 4eco_A          390 KYIPNIF-DAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKE---LFSTGSPLSSINL  464 (636)
T ss_dssp             SSCCSCC-CTTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH---HHHTTCCCSEEEC
T ss_pred             cccchhh-hhcccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcCCHH---HHccCCCCCEEEC
Confidence            9887644 344  389999999999988655 3666       777899999999999988884   4556889999999


Q ss_pred             cccHHHH--HHhccChh----HHHHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHH
Q 023443          148 KKERMEA--ASLFASEE----MEEEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEE  217 (282)
Q Consensus       148 s~~~~~~--~~~~~~~~----~~~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~  217 (282)
                      ++|++..  ...|....    ....+..+    +....+|..+.    ...+++|+.|+|++|+++.+|..+.++++|++
T Consensus       465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~----~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~  540 (636)
T 4eco_A          465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR----ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG  540 (636)
T ss_dssp             CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS----TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred             CCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh----hccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence            9876531  11111110    00011111    22223333221    01567888888888888888888888888888


Q ss_pred             HHH------HHHhhhCCCCCCCCCCCCCCCCCCcccccCCCC
Q 023443          218 VAR------LEKVLKSGQLPADLKIPDYDSGSKDVKENDEKM  253 (282)
Q Consensus       218 L~l------~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~  253 (282)
                      |++      ++|.+ .+.+|..++.......++...+..+..
T Consensus       541 L~Ls~N~~ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~i  581 (636)
T 4eco_A          541 FGIRNQRDAQGNRT-LREWPEGITLCPSLTQLQIGSNDIRKV  581 (636)
T ss_dssp             EECCSCBCTTCCBC-CCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             EECCCCcccccCcc-cccChHHHhcCCCCCEEECCCCcCCcc
Confidence            887      44556 577888887777777777777766443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=2.8e-24  Score=188.77  Aligned_cols=202  Identities=13%  Similarity=0.078  Sum_probs=131.1

Q ss_pred             CCCceeEEEecCCccc-cccccc--cCCCCCcEEeccCCCccccC-CCCCC-----CccCeEeccCCcCcccCCCcccCC
Q 023443           17 NAIKERELDLRGNKIA-VIENLG--ATEDQFDTIDLSDNEIVKLE-NMPHL-----NRLGTLIINNNRITRINPNIGEFL   87 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~-~ip~~~--~~l~~L~~L~Ls~N~l~~i~-~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l   87 (282)
                      ++++|++|++++|.|+ .+|..+  ..+++|++|++++|.++++| .+..+     ++|++|++++|+++++++..+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5677777777777777 566544  66777777777777777665 33444     777777777777777776666677


Q ss_pred             ccccEEeccCCcCCCC---CCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHH
Q 023443           88 PKLHTLVLTNNRLVNL---VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEME  164 (282)
Q Consensus        88 ~~L~~L~L~~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~  164 (282)
                      ++|++|++++|++.+.   +....+..+++|++|++++|.++.++......+..+++|++|++++|++.           
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------  241 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR-----------  241 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC-----------
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC-----------
Confidence            7777777777776542   22012366777777777777777544322224456677777777776531           


Q ss_pred             HHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCC
Q 023443          165 EEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK  244 (282)
Q Consensus       165 ~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~  244 (282)
                               ...|....     ..+++|++|+|++|+|+.+|..+.  ++|++|++++|.+  ..+|. +........++
T Consensus       242 ---------~~~~~~~~-----~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l--~~~p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          242 ---------DAAGAPSC-----DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL--DRNPS-PDELPQVGNLS  302 (312)
T ss_dssp             ---------SSCCCSCC-----CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC--CSCCC-TTTSCEEEEEE
T ss_pred             ---------cccchhhh-----hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC--CCChh-HhhCCCCCEEe
Confidence                     11121111     246788888888888888887776  7888888888888  55565 55444444444


Q ss_pred             cccc
Q 023443          245 DVKE  248 (282)
Q Consensus       245 ~~~~  248 (282)
                      ...+
T Consensus       303 L~~N  306 (312)
T 1wwl_A          303 LKGN  306 (312)
T ss_dssp             CTTC
T ss_pred             ccCC
Confidence            4333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=4.7e-23  Score=181.98  Aligned_cols=216  Identities=17%  Similarity=0.218  Sum_probs=156.6

Q ss_pred             ccCHHHHhcCC--CCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcc
Q 023443            3 RLTADLIWKSP--HFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITR   78 (282)
Q Consensus         3 ~l~~~~i~~~~--~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~   78 (282)
                      .++.+.+...+  .|.++++|++|++++|.|+.+ |..+..+++|++|++++|.++.+| .+.  ++|++|++++|.+++
T Consensus        58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~  135 (330)
T 1xku_A           58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITK  135 (330)
T ss_dssp             ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCB
T ss_pred             ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccc
Confidence            34445555433  588999999999999999977 688999999999999999999887 443  789999999999998


Q ss_pred             cCCCcccCCccccEEeccCCcCCC--CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH-
Q 023443           79 INPNIGEFLPKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA-  155 (282)
Q Consensus        79 ~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~-  155 (282)
                      +++..+.++++|++|++++|.++.  ..+ ..+.++++|++|++++|.++.+|..    +  .++|++|++++|++... 
T Consensus       136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          136 VRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQG----L--PPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             BCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCSS----C--CTTCSEEECTTSCCCEEC
T ss_pred             cCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccccCCcc----c--cccCCEEECCCCcCCccC
Confidence            888777888899999999998864  333 3677888888888888888888773    2  27788888887653211 


Q ss_pred             -HhccChhHHHHHhhh-ccccccC-CCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCC
Q 023443          156 -SLFASEEMEEEAKKE-SMKTLMP-VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA  232 (282)
Q Consensus       156 -~~~~~~~~~~~~~~~-~~~~~~p-~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~  232 (282)
                       ..|......+.+... +....++ ..+.      .+++|+.|++++|+++.+|.++..+++|++|++++|.+  ..+|.
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i--~~~~~  280 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLA------NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI--SAIGS  280 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGG------GSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC--CCCCT
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhcc------CCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC--CccCh
Confidence             112221111100000 1122222 2333      67888899999998888888888888999999998888  66665


Q ss_pred             CCC
Q 023443          233 DLK  235 (282)
Q Consensus       233 ~l~  235 (282)
                      ..+
T Consensus       281 ~~f  283 (330)
T 1xku_A          281 NDF  283 (330)
T ss_dssp             TSS
T ss_pred             hhc
Confidence            544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.3e-21  Score=166.48  Aligned_cols=177  Identities=19%  Similarity=0.289  Sum_probs=155.9

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~   96 (282)
                      ...++++++++.++.+|..+.  ++++.|+|++|.|+.++  .|..+++|++|+|++|.++++++..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            457889999999999997664  69999999999999985  68999999999999999999999988899999999999


Q ss_pred             CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM  176 (282)
Q Consensus        97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (282)
                      +|.++.+++ ..|..+++|++|++++|.|+.++..   .+..+++|++|++++|++                     ..+
T Consensus        92 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l---------------------~~~  146 (251)
T 3m19_A           92 NNQLASLPL-GVFDHLTQLDKLYLGGNQLKSLPSG---VFDRLTKLKELRLNTNQL---------------------QSI  146 (251)
T ss_dssp             TSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------CCC
T ss_pred             CCcccccCh-hHhcccCCCCEEEcCCCcCCCcChh---HhccCCcccEEECcCCcC---------------------Ccc
Confidence            999999987 5889999999999999999999885   468899999999999763                     223


Q ss_pred             CC-CCCCCcchhhcCCCeeeCCChhHHHHHHH-HhhcccChHHHHHHHHhhhCCC
Q 023443          177 PV-EVPNVSEEEEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQ  229 (282)
Q Consensus       177 p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~  229 (282)
                      |. .+.      .+++|+.|+|++|+++.+|+ .+..+++|+.|++++|.+ .+.
T Consensus       147 ~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~  194 (251)
T 3m19_A          147 PAGAFD------KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF-DCS  194 (251)
T ss_dssp             CTTTTT------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-CTT
T ss_pred             CHHHcC------cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce-eCC
Confidence            33 444      78899999999999998775 689999999999999999 444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=1.3e-23  Score=183.61  Aligned_cols=217  Identities=14%  Similarity=0.138  Sum_probs=163.8

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccC--CCcccCCccccEEeccC
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN--PNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~   97 (282)
                      +.++.+++.++.+|..+  .++|++|++++|.++.+|  .|..+++|++|++++|.++.+.  +..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            57899999999999755  369999999999999997  4799999999999999998763  23334789999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChhHHHHHhhh-cccc
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEEMEEEAKKE-SMKT  174 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~~~~~~~~~-~~~~  174 (282)
                      |.++.++.  .+..+++|++|++++|.++.++...  .+..+++|++|+++++....  ...|......+.+... +...
T Consensus        88 n~i~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           88 NGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSEEEEEE--EEETCTTCCEEECTTSEEESSTTTT--TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CccccChh--hcCCCCCCCEEECCCCcccccccch--hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            99999887  7889999999999999999887511  47889999999999965421  1122222111111111 1222


Q ss_pred             --ccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCC-CCCCCCCCCCCCcccccC
Q 023443          175 --LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKEND  250 (282)
Q Consensus       175 --~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~-~l~~~~~~~~~~~~~~~~  250 (282)
                        ..|..+.      .+++|+.|++++|+++.+ |..+..+++|++|++++|.+  ..+|. .+........++...+..
T Consensus       164 ~~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          164 ENFLPDIFT------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             GGEECSCCT------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--SBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             cccchhHHh------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc--CccChhhccCcccCCEeECCCCCC
Confidence              2566665      788999999999999966 67889999999999999999  44554 555555556666666554


Q ss_pred             CC
Q 023443          251 EK  252 (282)
Q Consensus       251 ~~  252 (282)
                      ..
T Consensus       236 ~~  237 (306)
T 2z66_A          236 MT  237 (306)
T ss_dssp             CB
T ss_pred             cc
Confidence            33

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=7.4e-23  Score=187.99  Aligned_cols=89  Identities=19%  Similarity=0.220  Sum_probs=42.3

Q ss_pred             CCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCcccc-C---CCCCCCccCeEeccCCcCcccCCC-cccCCc
Q 023443           15 FFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKL-E---NMPHLNRLGTLIINNNRITRINPN-IGEFLP   88 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i-~---~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~   88 (282)
                      |.++++|++|+|++|.++.+ |..+..+++|++|++++|.+++. +   .|..+++|++|++++|.++++.+. ++.+++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            44445555555555554433 34444455555555555555431 1   144455555555555555554332 234455


Q ss_pred             cccEEeccCCcCCCC
Q 023443           89 KLHTLVLTNNRLVNL  103 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~  103 (282)
                      +|++|++++|.++++
T Consensus       155 ~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          155 RFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TCCEEECTTCCBSCC
T ss_pred             cccEEeCCCCccccc
Confidence            555555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=8.2e-24  Score=196.82  Aligned_cols=212  Identities=18%  Similarity=0.163  Sum_probs=135.6

Q ss_pred             CCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           17 NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      .+++|++|+|++|.|+.++ ..|..+++|++|+|++|.|++++.|..+++|++|+|++|.|+++++.     ++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC-----TTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC-----CCcCEEEC
Confidence            3457888888888888665 67778888888888888888765577788888888888888776532     56666666


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--Hhcc-ChhHHHHHhh-hc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFA-SEEMEEEAKK-ES  171 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~-~~~~~~~~~~-~~  171 (282)
                      ++|.|++++. .   .+++|+.|++++|.++.+++.   .++.+++|++|++++|.+...  ..|. .......+.. .+
T Consensus       107 ~~N~l~~~~~-~---~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          107 ANNNISRVSC-S---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CSSCCCCEEE-C---CCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             cCCcCCCCCc-c---ccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            6666666554 1   245566666666666655433   345566666666666443210  0010 0000000000 01


Q ss_pred             cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCccccc
Q 023443          172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEN  249 (282)
Q Consensus       172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~  249 (282)
                      ....+|...       .+++|+.|+|++|+|+.+|+.+..+++|+.|++++|.+  ..||..++.......++...+.
T Consensus       180 ~l~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l--~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          180 FIYDVKGQV-------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CCCEEECCC-------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC--CEECTTCCCCTTCCEEECTTCC
T ss_pred             ccccccccc-------cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcC--cccchhhccCCCCCEEEcCCCC
Confidence            112222221       47789999999999998888899999999999999999  5688887766555555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=4.1e-24  Score=187.40  Aligned_cols=206  Identities=14%  Similarity=0.073  Sum_probs=142.7

Q ss_pred             CCCCCceeEEEecCCccc-cccccc--cCCCCCcEEeccCCCcccc-C-----CCCCCCccCeEeccCCcCcccCCCccc
Q 023443           15 FFNAIKERELDLRGNKIA-VIENLG--ATEDQFDTIDLSDNEIVKL-E-----NMPHLNRLGTLIINNNRITRINPNIGE   85 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~-~ip~~~--~~l~~L~~L~Ls~N~l~~i-~-----~~~~l~~L~~L~L~~N~l~~~~~~~~~   85 (282)
                      +..+++|++|++++|.+. .+|..+  ..+++|++|++++|.++.. +     .+..+++|++|++++|.++++++..+.
T Consensus        87 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           87 VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            334456888888888887 455555  7788888888888888763 1     345678888888888888888877777


Q ss_pred             CCccccEEeccCCcCCC---CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443           86 FLPKLHTLVLTNNRLVN---LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE  162 (282)
Q Consensus        86 ~l~~L~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~  162 (282)
                      .+++|++|++++|++.+   ++....+..+++|++|++++|+++.++......+..+++|++|++++|++          
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l----------  236 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL----------  236 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC----------
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC----------
Confidence            88888888888888764   33212346788888888888888766653332356778888888888763          


Q ss_pred             HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCC
Q 023443          163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSG  242 (282)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~  242 (282)
                                ....|..+..   ...+++|++|+|++|+|+.+|..+.  ++|++|++++|.+  ..+|. +........
T Consensus       237 ----------~~~~p~~~~~---~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l--~~~~~-~~~l~~L~~  298 (310)
T 4glp_A          237 ----------RATVNPSAPR---CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL--NRAPQ-PDELPEVDN  298 (310)
T ss_dssp             ----------CCCCCSCCSS---CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC--CSCCC-TTSCCCCSC
T ss_pred             ----------CccchhhHHh---ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC--CCCch-hhhCCCccE
Confidence                      1223444440   0113689999999999998888775  7899999999999  44443 333333344


Q ss_pred             CCcccc
Q 023443          243 SKDVKE  248 (282)
Q Consensus       243 ~~~~~~  248 (282)
                      ++...+
T Consensus       299 L~L~~N  304 (310)
T 4glp_A          299 LTLDGN  304 (310)
T ss_dssp             EECSST
T ss_pred             EECcCC
Confidence            444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=3.3e-23  Score=198.72  Aligned_cols=233  Identities=12%  Similarity=0.109  Sum_probs=142.4

Q ss_pred             cCHHHHh-cCCCCCCCCceeEEEecCCccccccccccCCCC-CcEEeccCCCccccC-CCCCC--CccCeEeccCCcCcc
Q 023443            4 LTADLIW-KSPHFFNAIKERELDLRGNKIAVIENLGATEDQ-FDTIDLSDNEIVKLE-NMPHL--NRLGTLIINNNRITR   78 (282)
Q Consensus         4 l~~~~i~-~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~-L~~L~Ls~N~l~~i~-~~~~l--~~L~~L~L~~N~l~~   78 (282)
                      ++.+.+. ..+.|..+++|++|++++|.++.+|..+..+++ |++|++++|.++.+| .+..+  ++|++|++++|.+++
T Consensus       337 L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          337 CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             CCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             CcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence            3344444 344666677777777777777777766777777 777777777777666 34433  366666666666666


Q ss_pred             cCCCccc-------CCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhC-------CCCcE
Q 023443           79 INPNIGE-------FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL-------KSLRV  144 (282)
Q Consensus        79 ~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l-------~~L~~  144 (282)
                      ..|..+.       .+++|++|++++|.++.+|. ..+..+++|++|++++|+++.+|...   +...       ++|+.
T Consensus       417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i~~~~---~~~~~~~~~~l~~L~~  492 (636)
T 4eco_A          417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNS---LKDENENFKNTYLLTS  492 (636)
T ss_dssp             TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCSBCCSSS---SEETTEECTTGGGCCE
T ss_pred             cchhhhcccccccccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCCCCCcCHHH---hccccccccccCCccE
Confidence            5444443       45566666666666666654 23445666666666666666666531   1211       26666


Q ss_pred             ecCcccHHHH--HHhc-cChhHHHHHhh-hccccccCCCCCCCcchhhcCCCeeeCCC------hhHHH-HHHHHhhccc
Q 023443          145 LDFKKERMEA--ASLF-ASEEMEEEAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPT------PEQII-AIKAAIVNSQ  213 (282)
Q Consensus       145 L~ls~~~~~~--~~~~-~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls------~N~l~-~ip~~l~~~~  213 (282)
                      |++++|++..  ..++ ........+.. .+....+|..+.      .+++|+.|+|+      +|++. .+|.++.+++
T Consensus       493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~------~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~  566 (636)
T 4eco_A          493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL------NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP  566 (636)
T ss_dssp             EECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG------GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred             EECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh------cCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence            6666654321  0111 01100000000 022233566665      78999999994      56666 8999999999


Q ss_pred             ChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443          214 TLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND  250 (282)
Q Consensus       214 ~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~  250 (282)
                      +|++|++++|.+  +.||..+.  .....++...+..
T Consensus       567 ~L~~L~Ls~N~l--~~ip~~~~--~~L~~L~Ls~N~l  599 (636)
T 4eco_A          567 SLTQLQIGSNDI--RKVNEKIT--PNISVLDIKDNPN  599 (636)
T ss_dssp             SCCEEECCSSCC--CBCCSCCC--TTCCEEECCSCTT
T ss_pred             CCCEEECCCCcC--CccCHhHh--CcCCEEECcCCCC
Confidence            999999999999  99999877  3555666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=1.5e-23  Score=199.26  Aligned_cols=203  Identities=15%  Similarity=0.090  Sum_probs=137.6

Q ss_pred             CCCCCCceeEEEecCCccccc---cccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCC-CcccCCc
Q 023443           14 HFFNAIKERELDLRGNKIAVI---ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINP-NIGEFLP   88 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~i---p~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~   88 (282)
                      .+..+++|++|++++|.++.+   |..+..+++|++|++++|.++.+| .|..+++|++|++++|.+.++++ ..+..++
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            455667777777777777654   556666777777777777777765 66777777777777777777655 4556777


Q ss_pred             cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE  166 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~  166 (282)
                      +|++|++++|.+++..+ ..+.++++|++|++++|.++.  +|.    .+..+++|+.|++++|.+              
T Consensus       425 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l--------------  485 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQL--------------  485 (606)
T ss_dssp             TCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCC--------------
T ss_pred             cCCEEECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcC--------------
Confidence            77777777777776554 367777777777777777764  454    466777777777777542              


Q ss_pred             HhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC-CCCCC
Q 023443          167 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY-DSGSK  244 (282)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~-~~~~~  244 (282)
                            ....|..+.      .+++|+.|++++|+++.+ |..+..+++|++|++++|.+  ..+|..+....+ ...++
T Consensus       486 ------~~~~~~~~~------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l--~~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          486 ------EQISWGVFD------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI--ETSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             ------CEECTTTTT------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC--CCEESCGGGSCTTCCEEE
T ss_pred             ------CccChhhhc------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC--cccCHhHhhhcccCcEEE
Confidence                  122344444      677888888888888754 67778888888888888887  577777555433 34444


Q ss_pred             ccccc
Q 023443          245 DVKEN  249 (282)
Q Consensus       245 ~~~~~  249 (282)
                      ...+.
T Consensus       552 l~~N~  556 (606)
T 3vq2_A          552 LTNNS  556 (606)
T ss_dssp             CCSCC
T ss_pred             ccCCC
Confidence            44433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=3.8e-22  Score=175.47  Aligned_cols=210  Identities=17%  Similarity=0.119  Sum_probs=133.7

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC------------------CCCCCccCeEeccCCc
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN------------------MPHLNRLGTLIINNNR   75 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~------------------~~~l~~L~~L~L~~N~   75 (282)
                      .|..+++|++|++++|.++.+++ +..+++|++|++++|.|++++.                  ...+++|++|++++|+
T Consensus        53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~  131 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK  131 (317)
T ss_dssp             HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred             HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence            35566666666666666665444 5556666666666666554321                  1124556667777777


Q ss_pred             CcccCCCcccCCccccEEeccCCcCCCCCCCCCC-CCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH
Q 023443           76 ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL-TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA  154 (282)
Q Consensus        76 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~  154 (282)
                      ++.+++..+..+++|++|++++|.++++++ ..+ ..+++|++|++++|.++.++..     ..+++|++|++++|++..
T Consensus       132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSSCCCE
T ss_pred             CCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCcccccc-----cccccCCEEECCCCcCCc
Confidence            777666666677788888888888777654 234 3567777777777777777652     346777777777755421


Q ss_pred             H-HhccChhHHHHHhh-hccccccCCCCCCCcchhhcCCCeeeCCChhHHH--HHHHHhhcccChHHHHHHHHhhhCCCC
Q 023443          155 A-SLFASEEMEEEAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVARLEKVLKSGQL  230 (282)
Q Consensus       155 ~-~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~~~~L~~L~l~~N~l~~g~i  230 (282)
                      . ..|........+.. .+....+|..+.      .+++|+.+++++|.++  .+|..+..+++|+.+++..+.--.|..
T Consensus       206 l~~~~~~l~~L~~L~L~~N~l~~l~~~~~------~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          206 MGPEFQSAAGVTWISLRNNKLVLIEKALR------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             ECGGGGGGTTCSEEECTTSCCCEECTTCC------CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             chhhhcccCcccEEECcCCcccchhhHhh------cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            1 00111111100000 033344666666      7889999999999998  788999999999999999554436776


Q ss_pred             CCCCCC
Q 023443          231 PADLKI  236 (282)
Q Consensus       231 P~~l~~  236 (282)
                      |.....
T Consensus       280 ~~~~~~  285 (317)
T 3o53_A          280 EEECTV  285 (317)
T ss_dssp             SCCCSS
T ss_pred             hhccCC
Confidence            655443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=4.8e-23  Score=202.84  Aligned_cols=235  Identities=13%  Similarity=0.111  Sum_probs=137.3

Q ss_pred             cCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCC-CcEEeccCCCccccC-CCCCCC--ccCeEeccCCcCccc
Q 023443            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQ-FDTIDLSDNEIVKLE-NMPHLN--RLGTLIINNNRITRI   79 (282)
Q Consensus         4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~-L~~L~Ls~N~l~~i~-~~~~l~--~L~~L~L~~N~l~~~   79 (282)
                      |+.+.+...+.|..+++|+.|+|++|.|+.+|..+..+++ |+.|+|++|.|+.+| .+..++  +|+.|++++|++.+.
T Consensus       580 Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          580 CVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             CTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             CCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc
Confidence            4444444444666677777777777777777766666666 777777777776665 333332  266666666666554


Q ss_pred             CCCcc---c--CCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHH----HhhCCCCcEecCccc
Q 023443           80 NPNIG---E--FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV----IHKLKSLRVLDFKKE  150 (282)
Q Consensus        80 ~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~----l~~l~~L~~L~ls~~  150 (282)
                      ++.+.   .  .+++|+.|++++|.++.+|. ..+..+++|+.|+|++|+++.+|...+..    +.++++|+.|++++|
T Consensus       660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N  738 (876)
T 4ecn_A          660 GRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN  738 (876)
T ss_dssp             SSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred             cccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence            33221   0  23367777777777776665 23446777777777777777777642100    012237777777776


Q ss_pred             HHHH--HHhc-cChhHHHHHhhh-ccccccCCCCCCCcchhhcCCCeeeCCCh------hHHH-HHHHHhhcccChHHHH
Q 023443          151 RMEA--ASLF-ASEEMEEEAKKE-SMKTLMPVEVPNVSEEEEQQTPKVVAPTP------EQII-AIKAAIVNSQTLEEVA  219 (282)
Q Consensus       151 ~~~~--~~~~-~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~------N~l~-~ip~~l~~~~~L~~L~  219 (282)
                      ++..  ..++ ........+... +....+|..+.      .+++|+.|+|++      |++. .+|.++.++++|++|+
T Consensus       739 ~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~  812 (876)
T 4ecn_A          739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ  812 (876)
T ss_dssp             CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG------GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             CCccchHHhhhccCCCcCEEEeCCCCCCccchhhh------cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence            5421  0010 000000000000 12222455444      778888888866      5555 7788888888888888


Q ss_pred             HHHHhhhCCCCCCCCCCCCCCCCCCccccc
Q 023443          220 RLEKVLKSGQLPADLKIPDYDSGSKDVKEN  249 (282)
Q Consensus       220 l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~  249 (282)
                      +++|.+  +.||..++.  ....++...+.
T Consensus       813 Ls~N~L--~~Ip~~l~~--~L~~LdLs~N~  838 (876)
T 4ecn_A          813 IGSNDI--RKVDEKLTP--QLYILDIADNP  838 (876)
T ss_dssp             CCSSCC--CBCCSCCCS--SSCEEECCSCT
T ss_pred             CCCCCC--CccCHhhcC--CCCEEECCCCC
Confidence            888888  888888663  44445555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=8.6e-23  Score=182.02  Aligned_cols=178  Identities=21%  Similarity=0.204  Sum_probs=142.0

Q ss_pred             CceeEEEecCCccccccc-cccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++|++|++++|.|+.+|. .+..+++|++|++++|.|+.++  .|..+++|++|++++|.++++++..+.++++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            478888888888888774 7788888888888888888774  5888888888888888888888776778888888888


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCC-cCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT  174 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (282)
                      ++|.++.++....+..+++|++|++++| .+..++..   .+..+++|+.|++++|..                    ..
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l--------------------~~  188 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---DFAGLTFLEELEIDASDL--------------------QS  188 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTC--------------------CE
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHH---HccCCCCCCEEECCCCCc--------------------Cc
Confidence            8888888765236778888888888888 47777554   567788888888887653                    12


Q ss_pred             ccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHh-hcccChHHHHHHHHhh
Q 023443          175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAI-VNSQTLEEVARLEKVL  225 (282)
Q Consensus       175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l-~~~~~L~~L~l~~N~l  225 (282)
                      ..|..+.      .+++|+.|++++|+++.+|..+ ..+++|++|++++|.+
T Consensus       189 ~~~~~l~------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          189 YEPKSLK------SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             ECTTTTT------TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             cCHHHHh------ccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence            2455666      7889999999999999888765 5689999999999999

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=5e-23  Score=182.03  Aligned_cols=214  Identities=18%  Similarity=0.211  Sum_probs=156.6

Q ss_pred             cCHHHHhc--CCCCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCccc
Q 023443            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRI   79 (282)
Q Consensus         4 l~~~~i~~--~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~   79 (282)
                      ++.+.+..  +..|.++++|++|++++|.|+.+ |..+..+++|++|++++|.++.+| .+.  ++|++|++++|.++.+
T Consensus        61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~  138 (332)
T 2ft3_A           61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKV  138 (332)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCC
T ss_pred             CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCcc
Confidence            44444444  34689999999999999999977 578999999999999999999987 443  8999999999999999


Q ss_pred             CCCcccCCccccEEeccCCcCCC--CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--
Q 023443           80 NPNIGEFLPKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--  155 (282)
Q Consensus        80 ~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--  155 (282)
                      ++..+.++++|++|++++|.++.  ..+ ..+..+ +|++|++++|.++.+|..    +  .++|+.|++++|.+...  
T Consensus       139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l-~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~  210 (332)
T 2ft3_A          139 PKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGL-KLNYLRISEAKLTGIPKD----L--PETLNELHLDHNKIQAIEL  210 (332)
T ss_dssp             CSGGGSSCSSCCEEECCSCCCBGGGSCT-TSSCSC-CCSCCBCCSSBCSSCCSS----S--CSSCSCCBCCSSCCCCCCT
T ss_pred             CHhHhCCCccCCEEECCCCccccCCCCc-ccccCC-ccCEEECcCCCCCccCcc----c--cCCCCEEECCCCcCCccCH
Confidence            99888899999999999999964  443 367777 888888888888888873    2  26788888888654221  


Q ss_pred             HhccChhHHHHHhhh-ccccccCC-CCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCC
Q 023443          156 SLFASEEMEEEAKKE-SMKTLMPV-EVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPAD  233 (282)
Q Consensus       156 ~~~~~~~~~~~~~~~-~~~~~~p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~  233 (282)
                      ..|........+... +....++. .+      ..+++|+.|++++|+++.+|..+..+++|++|++++|.+  ..+|..
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l--~~~~~~  282 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENGSL------SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI--TKVGVN  282 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTTGG------GGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCC--CBCCTT
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChhHh------hCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCC--CccChh
Confidence            111111111000000 11122222 23      367788888888888888888888888888888888888  566654


Q ss_pred             CC
Q 023443          234 LK  235 (282)
Q Consensus       234 l~  235 (282)
                      ..
T Consensus       283 ~~  284 (332)
T 2ft3_A          283 DF  284 (332)
T ss_dssp             SS
T ss_pred             Hc
Confidence            43

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=5.5e-24  Score=196.96  Aligned_cols=219  Identities=19%  Similarity=0.197  Sum_probs=158.5

Q ss_pred             cCHHHHhc--CCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (282)
Q Consensus         4 l~~~~i~~--~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~   78 (282)
                      |+.+.+..  +..|.++++|++|+|++|.|+.+| ..|..+++|++|+|++|.++.++  .|..+++|++|++++|.++.
T Consensus        63 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  142 (477)
T 2id5_A           63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY  142 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred             CCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce
Confidence            44444443  467899999999999999999998 56789999999999999999874  78999999999999999999


Q ss_pred             cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH---H
Q 023443           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA---A  155 (282)
Q Consensus        79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~---~  155 (282)
                      +++..|.++++|++|++++|.++.+++ ..+..+++|+.|++++|.+..++..   .+..+++|+.|+++++....   .
T Consensus       143 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          143 ISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             ECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCTTCCEECT
T ss_pred             eChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCccccccCc
Confidence            998888899999999999999999886 4788999999999999999988765   46777888888877643210   0


Q ss_pred             Hh-----------------------ccChhHHHHHhhh-ccccccCC-CCCCCcchhhcCCCeeeCCChhHHHHH-HHHh
Q 023443          156 SL-----------------------FASEEMEEEAKKE-SMKTLMPV-EVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAI  209 (282)
Q Consensus       156 ~~-----------------------~~~~~~~~~~~~~-~~~~~~p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l  209 (282)
                      ..                       |........+... +....++. .+.      .+++|+.|+|++|+++.+ |.++
T Consensus       219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH------ELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT------TCTTCCEEECCSSCCSEECTTTB
T ss_pred             ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc------ccccCCEEECCCCccceECHHHh
Confidence            00                       1100000000000 11111222 222      566777777777777744 5567


Q ss_pred             hcccChHHHHHHHHhhhCCCCCCCC
Q 023443          210 VNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       210 ~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                      ..+++|+.|++++|.+  ..+|+..
T Consensus       293 ~~l~~L~~L~L~~N~l--~~~~~~~  315 (477)
T 2id5_A          293 RGLNYLRVLNVSGNQL--TTLEESV  315 (477)
T ss_dssp             TTCTTCCEEECCSSCC--SCCCGGG
T ss_pred             cCcccCCEEECCCCcC--ceeCHhH
Confidence            7777777777777777  5555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=3.2e-23  Score=181.82  Aligned_cols=194  Identities=19%  Similarity=0.201  Sum_probs=163.7

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      .+..+++|++|++++|.++.+| .+..+++|++|++++|.++.++.+..+++|++|++++|.++.++  .+..+++|++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L  112 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTL  112 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEE
T ss_pred             cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEE
Confidence            4456789999999999999988 57789999999999999999977999999999999999999985  35689999999


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMK  173 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~  173 (282)
                      ++++|.+++++   .+..+++|++|++++|.++.++.     +..+++|++|++++|++.                    
T Consensus       113 ~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~--------------------  164 (308)
T 1h6u_A          113 DLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVS--------------------  164 (308)
T ss_dssp             ECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCC--------------------
T ss_pred             ECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCC--------------------
Confidence            99999999986   48899999999999999999876     689999999999997631                    


Q ss_pred             cccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443          174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND  250 (282)
Q Consensus       174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~  250 (282)
                       .++. +.      .+++|+.|++++|+++.+++ +..+++|++|++++|.+  ..+|+ +........++...+..
T Consensus       165 -~~~~-l~------~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l--~~~~~-l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          165 -DLTP-LA------NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI--SDVSP-LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             -CCGG-GT------TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC--CBCGG-GTTCTTCCEEEEEEEEE
T ss_pred             -CChh-hc------CCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCcc--Ccccc-ccCCCCCCEEEccCCee
Confidence             1222 33      67899999999999998876 89999999999999999  56663 55555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.6e-22  Score=163.84  Aligned_cols=130  Identities=22%  Similarity=0.317  Sum_probs=119.4

Q ss_pred             CCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443           18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~   94 (282)
                      .++|++|++++|.|+.++ ..+..+++|++|++++|.|+.++  .|..+++|++|++++|.++.+++..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            568999999999999888 56788999999999999999986  478999999999999999999998888999999999


Q ss_pred             ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      +++|.|+++++ ..|..+++|++|++++|.++.++..   .+..+++|++|++++|.
T Consensus       107 L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          107 LNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCC
T ss_pred             cCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCC
Confidence            99999999987 5689999999999999999999885   47889999999999974

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=9.6e-23  Score=187.23  Aligned_cols=145  Identities=17%  Similarity=0.222  Sum_probs=99.6

Q ss_pred             cCHHHHhc--CCCCCCCCceeEEEecCCcccc-ccc--cccCCCCCcEEeccCCCcccc-CC--CCCCCccCeEeccCCc
Q 023443            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAV-IEN--LGATEDQFDTIDLSDNEIVKL-EN--MPHLNRLGTLIINNNR   75 (282)
Q Consensus         4 l~~~~i~~--~~~~~~l~~L~~L~Ls~N~l~~-ip~--~~~~l~~L~~L~Ls~N~l~~i-~~--~~~l~~L~~L~L~~N~   75 (282)
                      |+.+.+..  |..|.++++|++|++++|.++. ++.  .+..+++|++|++++|.++.+ |.  +..+++|++|++++|.
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            44444433  4467777888888888888774 333  366777888888888887776 42  6777777777777777


Q ss_pred             CcccCCCcccCC--------------------------------------------------------------------
Q 023443           76 ITRINPNIGEFL--------------------------------------------------------------------   87 (282)
Q Consensus        76 l~~~~~~~~~~l--------------------------------------------------------------------   87 (282)
                      ++++++..+..+                                                                    
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence            776654332221                                                                    


Q ss_pred             -----------------------------ccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhh
Q 023443           88 -----------------------------PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK  138 (282)
Q Consensus        88 -----------------------------~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~  138 (282)
                                                   ++|++|++++|.+++.++ ..++.+++|++|++++|.++.++..   .+..
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~  321 (455)
T 3v47_A          246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDN---AFWG  321 (455)
T ss_dssp             CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTT---TTTT
T ss_pred             eccccccccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChh---HhcC
Confidence                                         245555555555555555 4788889999999999999877654   5778


Q ss_pred             CCCCcEecCcccHH
Q 023443          139 LKSLRVLDFKKERM  152 (282)
Q Consensus       139 l~~L~~L~ls~~~~  152 (282)
                      +++|++|++++|++
T Consensus       322 l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          322 LTHLLKLNLSQNFL  335 (455)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             cccCCEEECCCCcc
Confidence            89999999998754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=2.3e-23  Score=183.23  Aligned_cols=214  Identities=18%  Similarity=0.153  Sum_probs=152.1

Q ss_pred             CCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443           16 FNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~   94 (282)
                      ..+++|++|++++|.|+.++ ..+..+++|++|+|++|.+++++.+..+++|++|++++|.++++++     .++|++|+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~  105 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-----CCCcCEEE
Confidence            45678999999999999876 7889999999999999999987668899999999999999988763     26677777


Q ss_pred             ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH---HhccChhHHHHHhhh-
Q 023443           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA---SLFASEEMEEEAKKE-  170 (282)
Q Consensus        95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~---~~~~~~~~~~~~~~~-  170 (282)
                      +++|.+++++. .   .+++|+.|++++|+++.++..   .+..+++|++|++++|.+...   .++......+.+... 
T Consensus       106 l~~n~l~~~~~-~---~~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          106 AANNNISRVSC-S---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CCSSCCSEEEE-C---CCSSCEEEECCSSCCCSGGGB---CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CCCCccCCcCc-c---ccCCCCEEECCCCCCCCccch---hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            77777776654 1   245677777777777766543   345667777777776543211   111111000000000 


Q ss_pred             ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443          171 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND  250 (282)
Q Consensus       171 ~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~  250 (282)
                      +....++...       .+++|+.|++++|+++.+|+.+..+++|++|++++|.+  ..||..+........++...+..
T Consensus       179 N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          179 NFIYDVKGQV-------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             SCCCEEECCC-------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC--CEECTTCCCCTTCCEEECTTCCC
T ss_pred             CcCccccccc-------ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc--cchhhHhhcCCCCCEEEccCCCc
Confidence            1122223222       37799999999999999988899999999999999999  67898887776666666655543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=2.1e-22  Score=178.64  Aligned_cols=206  Identities=17%  Similarity=0.233  Sum_probs=143.3

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      .++.+.+...+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++.+++ 
T Consensus        50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-  127 (347)
T 4fmz_A           50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-  127 (347)
T ss_dssp             ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-
T ss_pred             EEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-
Confidence            3455556666778888999999999999998887 77889999999999999988888889999999999999988866 


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE  162 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~  162 (282)
                       +..+++|++|++++|.....++  .+..+++|++|++++|.+..++.     +..+++|+.|+++++.......+....
T Consensus       128 -~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~l~  199 (347)
T 4fmz_A          128 -LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIEDISPLASLT  199 (347)
T ss_dssp             -GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCCCCCGGGGGCT
T ss_pred             -hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCcccccccccCCC
Confidence             5688899999999986555444  57888888888888888887765     678888888888886532211111111


Q ss_pred             HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                            .+.........+.+......+++|+.|++++|+++.++. +..+++|++|++++|.+
T Consensus       200 ------~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          200 ------SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             ------TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             ------ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc
Confidence                  010000000111111112355666666777666665555 66666666666666666

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=4.3e-22  Score=189.28  Aligned_cols=133  Identities=21%  Similarity=0.212  Sum_probs=78.7

Q ss_pred             CCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443           14 HFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L   90 (282)
                      .|.++++|++|++++|.|+.+ |..|..+++|++|++++|.++.+ | .|+.+++|++|++++|.++++++..+.++++|
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence            456666666666666666644 35566666666666666666654 3 45666666666666666666555455566666


Q ss_pred             cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCc--EecCccc
Q 023443           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLR--VLDFKKE  150 (282)
Q Consensus        91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~--~L~ls~~  150 (282)
                      ++|++++|.+++++. ..+..+++|++|++++|.++.++..   .++.+++|+  .|++++|
T Consensus       132 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          132 ESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCCSEEEECTTC
T ss_pred             cEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChh---hhhhhcccceeEEecCCC
Confidence            666666666665432 1344466666666666666655443   455566665  5566553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1.7e-22  Score=199.05  Aligned_cols=229  Identities=12%  Similarity=0.049  Sum_probs=132.7

Q ss_pred             CCCCCceeEEEecCCccccccc--cccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcc-cc
Q 023443           15 FFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK-LH   91 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~   91 (282)
                      +..+++|++|+|++|.|+.||.  .+..+++|+.|+|++|.|+.+|.|+.+++|+.|+|++|+++.+|..+ ..+++ |+
T Consensus       544 ~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l-~~l~~~L~  622 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF-CAFTDQVE  622 (876)
T ss_dssp             TTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTS-CEECTTCC
T ss_pred             ccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHH-hhccccCC
Confidence            3445566666666666666665  56666666666666666666666666666666666666666555443 35555 66


Q ss_pred             EEeccCCcCCCCCCCCCCCC-------------------------------CCCccEEEeeCCcCCccCCchHHHHhhCC
Q 023443           92 TLVLTNNRLVNLVEIDPLTS-------------------------------LPKLQFLSLLDNSITKKPNYRLYVIHKLK  140 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~-------------------------------l~~L~~L~L~~N~l~~ip~~~~~~l~~l~  140 (282)
                      +|++++|.++.+|.  .+..                               +++|+.|++++|.++.+|..   .+..++
T Consensus       623 ~L~Ls~N~L~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~---~~~~l~  697 (876)
T 4ecn_A          623 GLGFSHNKLKYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE---LFATGS  697 (876)
T ss_dssp             EEECCSSCCCSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH---HHHTTC
T ss_pred             EEECcCCCCCcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH---HHccCC
Confidence            66666666655543  3332                               23566666666666666653   334667


Q ss_pred             CCcEecCcccHHHH--HHhccChh----HHHHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhh
Q 023443          141 SLRVLDFKKERMEA--ASLFASEE----MEEEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIV  210 (282)
Q Consensus       141 ~L~~L~ls~~~~~~--~~~~~~~~----~~~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~  210 (282)
                      +|+.|++++|++..  ...|....    ....+..+    +....+|..+.    ...+++|+.|+|++|+|+.+|..+.
T Consensus       698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~----~~~l~~L~~L~Ls~N~L~~lp~~l~  773 (876)
T 4ecn_A          698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR----ATTLPYLSNMDVSYNCFSSFPTQPL  773 (876)
T ss_dssp             CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS----TTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred             CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh----hccCCCcCEEEeCCCCCCccchhhh
Confidence            77777777755431  11111110    00011111    11222332221    0156778888888888877777778


Q ss_pred             cccChHHHHHHH------HhhhCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 023443          211 NSQTLEEVARLE------KVLKSGQLPADLKIPDYDSGSKDVKENDEKMV  254 (282)
Q Consensus       211 ~~~~L~~L~l~~------N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~~  254 (282)
                      .+++|+.|++++      |.+ .+.+|..++.......++...+..+..+
T Consensus       774 ~L~~L~~L~Ls~N~~ls~N~l-~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip  822 (876)
T 4ecn_A          774 NSSQLKAFGIRHQRDAEGNRI-LRQWPTGITTCPSLIQLQIGSNDIRKVD  822 (876)
T ss_dssp             GCTTCCEEECCCCBCTTCCBC-CCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred             cCCCCCEEECCCCCCcccccc-cccChHHHhcCCCCCEEECCCCCCCccC
Confidence            888888887765      555 5777877777777777777777664433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=7.5e-23  Score=194.55  Aligned_cols=225  Identities=16%  Similarity=0.099  Sum_probs=141.7

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCc-ccCCCcccCCccc
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRIT-RINPNIGEFLPKL   90 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L   90 (282)
                      .|.++++|++|++++|.++.+|..+..+++|++|++++|.++.+ | .+..+++|++|++++|.+. .+++..+..+++|
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            37788889999999998888888888888888999988888876 3 6778888888888888877 4666666778888


Q ss_pred             cEEeccCCcCCCCC--CCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH---HhccChhHHH
Q 023443           91 HTLVLTNNRLVNLV--EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA---SLFASEEMEE  165 (282)
Q Consensus        91 ~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~---~~~~~~~~~~  165 (282)
                      ++|++++|.+++..  + ..+..+++|++|++++|.+..++..   .+..+++|+.|++++|+....   ..|.......
T Consensus       353 ~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCN-LQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             CEEECCSSCCCEEEEST-TTTTTCTTCCEEECCSCSCEEECTT---TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             CEEECCCCccccccCcc-hhcccCCCCCEEECCCCcCCcCCHH---HhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            88888888887764  3 2677788888888888887766543   466777788888877553211   1121111111


Q ss_pred             HHhhh-cccc-ccCCCCCCCcchhhcCCCeeeCCChhHHHH--HH--HHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC
Q 023443          166 EAKKE-SMKT-LMPVEVPNVSEEEEQQTPKVVAPTPEQIIA--IK--AAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY  239 (282)
Q Consensus       166 ~~~~~-~~~~-~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip--~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~  239 (282)
                      .+... +... ..|..+.      .+++|+.|++++|+++.  +|  ..+..+++|++|++++|.+ .+.+|..++....
T Consensus       429 ~L~l~~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~  501 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFD------GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSLKM  501 (606)
T ss_dssp             EEECTTCCCBTTCTTTTT------TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-CEECTTTTTTCTT
T ss_pred             EEECCCCccCCcCHHHHh------CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-CccChhhhccccC
Confidence            00000 1111 1222233      45566666666666553  11  3455556666666666655 3333445554444


Q ss_pred             CCCCCccccc
Q 023443          240 DSGSKDVKEN  249 (282)
Q Consensus       240 ~~~~~~~~~~  249 (282)
                      ...++...+.
T Consensus       502 L~~L~Ls~N~  511 (606)
T 3t6q_A          502 MNHVDLSHNR  511 (606)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            4444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=5.7e-23  Score=173.43  Aligned_cols=182  Identities=14%  Similarity=0.171  Sum_probs=147.7

Q ss_pred             cCHHHHhcC--CCCCCCCceeEEEecCCc-ccccc-ccccCCCCCcEEeccC-CCccccC--CCCCCCccCeEeccCCcC
Q 023443            4 LTADLIWKS--PHFFNAIKERELDLRGNK-IAVIE-NLGATEDQFDTIDLSD-NEIVKLE--NMPHLNRLGTLIINNNRI   76 (282)
Q Consensus         4 l~~~~i~~~--~~~~~l~~L~~L~Ls~N~-l~~ip-~~~~~l~~L~~L~Ls~-N~l~~i~--~~~~l~~L~~L~L~~N~l   76 (282)
                      ++.+.+...  ..|.++++|++|++++|. ++.++ ..|..+++|++|++++ |.|+.++  .|..+++|++|++++|.+
T Consensus        38 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l  117 (239)
T 2xwt_C           38 LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL  117 (239)
T ss_dssp             EESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC
T ss_pred             EeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence            334444443  258899999999999997 99988 5788999999999999 9999986  688999999999999999


Q ss_pred             cccCCCcccCCcccc---EEeccCC-cCCCCCCCCCCCCCCCcc-EEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443           77 TRINPNIGEFLPKLH---TLVLTNN-RLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        77 ~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~l~~L~-~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      +++|.  +..+++|+   +|++++| .++.+++ ..|.++++|+ .|++++|.++.+|..   .+.. ++|+.|++++|+
T Consensus       118 ~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~---~~~~-~~L~~L~L~~n~  190 (239)
T 2xwt_C          118 KMFPD--LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQGY---AFNG-TKLDAVYLNKNK  190 (239)
T ss_dssp             CSCCC--CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECTT---TTTT-CEEEEEECTTCT
T ss_pred             ccccc--cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCHh---hcCC-CCCCEEEcCCCC
Confidence            99876  56888888   9999999 9999987 5799999999 999999999999985   3344 899999999974


Q ss_pred             HHHHHhccChhHHHHHhhhccccccC-CCCCCCcchhhc-CCCeeeCCChhHHHHHHHHhhcccChHHHHH
Q 023443          152 MEAASLFASEEMEEEAKKESMKTLMP-VEVPNVSEEEEQ-QTPKVVAPTPEQIIAIKAAIVNSQTLEEVAR  220 (282)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l-~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l  220 (282)
                      .                    ...+| ..+.      .+ ++|+.|++++|+++.+|..  .+++|+.|++
T Consensus       191 ~--------------------l~~i~~~~~~------~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l  233 (239)
T 2xwt_C          191 Y--------------------LTVIDKDAFG------GVYSGPSLLDVSQTSVTALPSK--GLEHLKELIA  233 (239)
T ss_dssp             T--------------------CCEECTTTTT------TCSBCCSEEECTTCCCCCCCCT--TCTTCSEEEC
T ss_pred             C--------------------cccCCHHHhh------ccccCCcEEECCCCccccCChh--HhccCceeec
Confidence            1                    12233 3344      67 8999999999999988865  3444444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=6e-23  Score=178.66  Aligned_cols=179  Identities=17%  Similarity=0.256  Sum_probs=153.9

Q ss_pred             CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      ...+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++.++.  +..+++|+
T Consensus        39 ~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~  115 (291)
T 1h6t_A           39 AVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLK  115 (291)
T ss_dssp             EECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCC
T ss_pred             ccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            3345567889999999999998875 67799999999999999998779999999999999999999764  56899999


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES  171 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~  171 (282)
                      +|++++|.++.++   .+..+++|+.|++++|.++.++     .+..+++|+.|++++|++                   
T Consensus       116 ~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l-------------------  168 (291)
T 1h6t_A          116 SLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI-------------------  168 (291)
T ss_dssp             EEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCC-------------------
T ss_pred             EEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCcc-------------------
Confidence            9999999999974   5788999999999999999984     478999999999999763                   


Q ss_pred             cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCC
Q 023443          172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA  232 (282)
Q Consensus       172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~  232 (282)
                        ..++. +.      .+++|+.|++++|+++.+|. +..+++|+.|++++|.+  ...|.
T Consensus       169 --~~~~~-l~------~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i--~~~~~  217 (291)
T 1h6t_A          169 --SDIVP-LA------GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC--LNKPI  217 (291)
T ss_dssp             --CCCGG-GT------TCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE--ECCCE
T ss_pred             --ccchh-hc------CCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc--cCCcc
Confidence              11121 33      68899999999999998864 99999999999999999  44443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=3.8e-24  Score=193.04  Aligned_cols=201  Identities=17%  Similarity=0.120  Sum_probs=123.6

Q ss_pred             CCCCCCceeEEEecCCccc----ccccc-------ccCCCCCcEEeccCCCccc-----cC-CCCCCCccCeEeccCCcC
Q 023443           14 HFFNAIKERELDLRGNKIA----VIENL-------GATEDQFDTIDLSDNEIVK-----LE-NMPHLNRLGTLIINNNRI   76 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~----~ip~~-------~~~l~~L~~L~Ls~N~l~~-----i~-~~~~l~~L~~L~L~~N~l   76 (282)
                      .+..+++|++|+|++|.+.    .+|..       +..+++|++|+|++|.|+.     ++ .+..+++|++|+|++|.+
T Consensus        55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            3667778888888886554    23332       2567888888888888776     33 566777888888888877


Q ss_pred             cccCCCcc----cCC---------ccccEEeccCCcCCC--CCCC-CCCCCCCCccEEEeeCCcCC------ccCCchHH
Q 023443           77 TRINPNIG----EFL---------PKLHTLVLTNNRLVN--LVEI-DPLTSLPKLQFLSLLDNSIT------KKPNYRLY  134 (282)
Q Consensus        77 ~~~~~~~~----~~l---------~~L~~L~L~~N~l~~--~~~~-~~~~~l~~L~~L~L~~N~l~------~ip~~~~~  134 (282)
                      +...+..+    ..+         ++|++|++++|+++.  ++.+ ..+..+++|+.|++++|.++      -++.    
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----  210 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----  210 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT----
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH----
Confidence            65332222    122         677788888877762  2210 13445677777777777776      1222    


Q ss_pred             HHhhCCCCcEecCcccHHHHHH------hccChhHHHHHhhh-ccccc--------cCCCCCCCcchhhcCCCeeeCCCh
Q 023443          135 VIHKLKSLRVLDFKKERMEAAS------LFASEEMEEEAKKE-SMKTL--------MPVEVPNVSEEEEQQTPKVVAPTP  199 (282)
Q Consensus       135 ~l~~l~~L~~L~ls~~~~~~~~------~~~~~~~~~~~~~~-~~~~~--------~p~~~~~~~~~~~l~~L~~L~Ls~  199 (282)
                      .+..+++|++|++++|.+....      .+.....   +..+ -..+.        ++..+.    .+.+++|+.|+|++
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~---L~~L~L~~n~i~~~~~~~l~~~l~----~~~~~~L~~L~L~~  283 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN---LRELGLNDCLLSARGAAAVVDAFS----KLENIGLQTLRLQY  283 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT---CCEEECTTCCCCHHHHHHHHHHHH----TCSSCCCCEEECCS
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC---cCEEECCCCCCchhhHHHHHHHHh----hccCCCeEEEECcC
Confidence            3566777777777776543211      1111000   0000 00000        011110    01367899999999


Q ss_pred             hHHHH-----HHHHh-hcccChHHHHHHHHhh
Q 023443          200 EQIIA-----IKAAI-VNSQTLEEVARLEKVL  225 (282)
Q Consensus       200 N~l~~-----ip~~l-~~~~~L~~L~l~~N~l  225 (282)
                      |.++.     +|..+ .++++|+.|++++|.+
T Consensus       284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            99987     99988 7789999999999999

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=1.7e-21  Score=179.89  Aligned_cols=187  Identities=16%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             HhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443            9 IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (282)
Q Consensus         9 i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~   88 (282)
                      +...+.+..+++|++|++++|.|+.+|  ++.+++|++|++++|.|++++ ++.+++|++|++++|++++++   +..++
T Consensus        54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~  127 (457)
T 3bz5_A           54 ITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNP  127 (457)
T ss_dssp             CCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCT
T ss_pred             cccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCC
Confidence            333334444455555555555554443  444445555555555554443 444455555555555554442   23445


Q ss_pred             cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCC-cCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHH
Q 023443           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEA  167 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~  167 (282)
                      +|++|++++|.+++++    ++.+++|++|++++| .+..++      +..+++|++|++++|++.... +....   .+
T Consensus       128 ~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~l~-l~~l~---~L  193 (457)
T 3bz5_A          128 LLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNKITELD-VSQNK---LL  193 (457)
T ss_dssp             TCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCSSCCCCCC-CTTCT---TC
T ss_pred             cCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc------cccCCcCCEEECCCCccceec-cccCC---CC
Confidence            5555555555554431    334444444444444 222331      244555555555554322110 10000   00


Q ss_pred             hhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          168 KKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       168 ~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      ..+    +....+  .+      ..+++|+.|++++|+++.+|  ++.+++|+.|++++|.+
T Consensus       194 ~~L~l~~N~l~~~--~l------~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          194 NRLNCDTNNITKL--DL------NQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             CEEECCSSCCSCC--CC------TTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred             CEEECcCCcCCee--cc------ccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcC
Confidence            000    001111  12      26677888888888888776  77788888888888887

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=3.2e-22  Score=192.69  Aligned_cols=224  Identities=19%  Similarity=0.129  Sum_probs=130.4

Q ss_pred             CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      |.++++|++|++++|.++.++ ..+..+++|++|+|++|.++.+|  .|+.+++|++|++++|.++++++..+.++++|+
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            556666666666666666543 55566666666666666666665  366666666666666666666665556666666


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChh-------
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEE-------  162 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~-------  162 (282)
                      +|++++|.+++.++ ..++++++|++|++++|.++.++...+ .+..+++|+.|++++|....  ...|....       
T Consensus       125 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  202 (680)
T 1ziw_A          125 TLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL  202 (680)
T ss_dssp             EEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred             EEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHh-hccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence            66666666666554 356666666666666666666554311 12234666666666643211  01111000       


Q ss_pred             ---------HHHHH-----hhh-------c-cccccCCCCCCCcchhhcC--CCeeeCCChhHHHHH-HHHhhcccChHH
Q 023443          163 ---------MEEEA-----KKE-------S-MKTLMPVEVPNVSEEEEQQ--TPKVVAPTPEQIIAI-KAAIVNSQTLEE  217 (282)
Q Consensus       163 ---------~~~~~-----~~~-------~-~~~~~p~~~~~~~~~~~l~--~L~~L~Ls~N~l~~i-p~~l~~~~~L~~  217 (282)
                               .....     ..+       + .....|..+.      .+.  +|+.|++++|+++.+ |.+++.+++|++
T Consensus       203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~------~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (680)
T 1ziw_A          203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL------GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY  276 (680)
T ss_dssp             TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG------GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh------ccCcCCCCEEECCCCCcCccCcccccCcccccE
Confidence                     00000     000       0 0011222222      343  488999999988855 466888899999


Q ss_pred             HHHHHHhhhCCCCCCCCCCCCCCCCCCccc
Q 023443          218 VARLEKVLKSGQLPADLKIPDYDSGSKDVK  247 (282)
Q Consensus       218 L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~  247 (282)
                      |++++|.+ .+.+|..+........++...
T Consensus       277 L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          277 FFLEYNNI-QHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             EECCSCCB-SEECTTTTTTCTTCCEEECTT
T ss_pred             eeCCCCcc-CccChhhhcCCCCccEEeccc
Confidence            99998888 566666776666555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=7.2e-22  Score=182.49  Aligned_cols=140  Identities=21%  Similarity=0.281  Sum_probs=104.7

Q ss_pred             cCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCc
Q 023443            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI   83 (282)
Q Consensus         4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~   83 (282)
                      +....+...+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++++++  
T Consensus        53 l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--  129 (466)
T 1o6v_A           53 ADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--  129 (466)
T ss_dssp             CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--
T ss_pred             cCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--
Confidence            334445555667788889999999998888877 77888889999988888887668888888888888888888865  


Q ss_pred             ccCCccccEEeccCCcCCCCCCC------------------CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEe
Q 023443           84 GEFLPKLHTLVLTNNRLVNLVEI------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL  145 (282)
Q Consensus        84 ~~~l~~L~~L~L~~N~l~~~~~~------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L  145 (282)
                      +..+++|++|++++|.++.++.+                  ..+..+++|+.|++++|.++.++.     +..+++|++|
T Consensus       130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L  204 (466)
T 1o6v_A          130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-----LAKLTNLESL  204 (466)
T ss_dssp             GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEE
T ss_pred             HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-----hccCCCCCEE
Confidence            56788888888888887776431                  124556667777777777776643     5667777777


Q ss_pred             cCcccH
Q 023443          146 DFKKER  151 (282)
Q Consensus       146 ~ls~~~  151 (282)
                      +++++.
T Consensus       205 ~l~~n~  210 (466)
T 1o6v_A          205 IATNNQ  210 (466)
T ss_dssp             ECCSSC
T ss_pred             EecCCc
Confidence            777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=2.5e-22  Score=190.92  Aligned_cols=189  Identities=15%  Similarity=0.122  Sum_probs=164.7

Q ss_pred             CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC---CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~   88 (282)
                      +..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+.+++   .|..+++|++|++++|.+++.++..+.+++
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  448 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT  448 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence            34567899999999999999999999999999999999999999873   688999999999999999998888888999


Q ss_pred             cccEEeccCCcCCC-CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHH
Q 023443           89 KLHTLVLTNNRLVN-LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEA  167 (282)
Q Consensus        89 ~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~  167 (282)
                      +|++|++++|.+++ .++ ..++.+++|+.|++++|+++.+++.   .+..+++|+.|++++|++               
T Consensus       449 ~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l---------------  509 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWG---VFDTLHRLQLLNMSHNNL---------------  509 (606)
T ss_dssp             TCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCC---------------
T ss_pred             CCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCcCCccChh---hhcccccCCEEECCCCcC---------------
Confidence            99999999999997 233 3899999999999999999987654   578999999999999863               


Q ss_pred             hhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhccc-ChHHHHHHHHhhhCCCCC
Q 023443          168 KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQ-TLEEVARLEKVLKSGQLP  231 (282)
Q Consensus       168 ~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~-~L~~L~l~~N~l~~g~iP  231 (282)
                           ....|..+.      .+++|+.|++++|+++.+|..+..++ +|+.|++++|.+ .+..|
T Consensus       510 -----~~~~~~~~~------~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~-~c~c~  562 (606)
T 3vq2_A          510 -----LFLDSSHYN------QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV-ACICE  562 (606)
T ss_dssp             -----SCEEGGGTT------TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC-CCSST
T ss_pred             -----CCcCHHHcc------CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc-ccCCc
Confidence                 122355555      78899999999999999999999997 599999999999 45444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=3.5e-20  Score=154.73  Aligned_cols=144  Identities=25%  Similarity=0.347  Sum_probs=126.2

Q ss_pred             cCHHHHhcCCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccC
Q 023443            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      ++.+.+...+.-. .++|+.|++++|.|+.++ ..|..+++|++|+|++|.|+.+ | .|.++++|++|+|++|.|+.++
T Consensus        18 c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~   96 (220)
T 2v9t_B           18 CRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP   96 (220)
T ss_dssp             CTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             cCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence            3344444443311 268999999999999988 5888999999999999999998 4 7999999999999999999999


Q ss_pred             CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +.+|.++++|++|+|++|.|+++++ ..|..+++|++|+|++|+|+.++..   .+..+++|++|++++|..
T Consensus        97 ~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           97 KSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCE
T ss_pred             HhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCCc
Confidence            9999899999999999999999987 5899999999999999999999875   578899999999999764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.2e-22  Score=178.23  Aligned_cols=190  Identities=14%  Similarity=0.101  Sum_probs=152.5

Q ss_pred             cCHHHHhc--CCCC--CCCCceeEEEecCCccccccccccCC-----CCCcEEeccCCCccccC--CCCCCCccCeEecc
Q 023443            4 LTADLIWK--SPHF--FNAIKERELDLRGNKIAVIENLGATE-----DQFDTIDLSDNEIVKLE--NMPHLNRLGTLIIN   72 (282)
Q Consensus         4 l~~~~i~~--~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~~l-----~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~   72 (282)
                      ++.+.+..  |..+  ..+++|++|++++|.|+.+|..+..+     ++|++|++++|+|++++  .|+.+++|++|+++
T Consensus       102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  181 (312)
T 1wwl_A          102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS  181 (312)
T ss_dssp             EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred             ccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence            34444442  4444  78999999999999999888777766     99999999999999985  78999999999999


Q ss_pred             CCcCccc---CCC-cccCCccccEEeccCCcCCCCCCC--CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEec
Q 023443           73 NNRITRI---NPN-IGEFLPKLHTLVLTNNRLVNLVEI--DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD  146 (282)
Q Consensus        73 ~N~l~~~---~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~  146 (282)
                      +|++.+.   ++. .+..+++|++|++++|.|+.++.+  ..+..+++|++|++++|+++..++..  .+..+++|++|+
T Consensus       182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~  259 (312)
T 1wwl_A          182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP--SCDWPSQLNSLN  259 (312)
T ss_dssp             SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--CCCCCTTCCEEE
T ss_pred             CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--hhhhcCCCCEEE
Confidence            9998663   322 236899999999999999965431  23457899999999999999755210  356689999999


Q ss_pred             CcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          147 FKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       147 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      +++|++                     ..+|..+.        ++|++|+|++|+|+.+|. +..+++|++|++++|.+
T Consensus       260 Ls~N~l---------------------~~ip~~~~--------~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          260 LSFTGL---------------------KQVPKGLP--------AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CTTSCC---------------------SSCCSSCC--------SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred             CCCCcc---------------------Chhhhhcc--------CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence            999863                     23444432        589999999999998876 99999999999999998

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.83  E-value=1.6e-21  Score=173.06  Aligned_cols=229  Identities=16%  Similarity=0.200  Sum_probs=135.8

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCC-ccccCCCCCCCccCeEeccCCcCcccCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE-IVKLENMPHLNRLGTLIINNNRITRINP   81 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~-l~~i~~~~~l~~L~~L~L~~N~l~~~~~   81 (282)
                      .++.+.+...+.+.++++|++|++++|.++.++. +..+++|++|++++|. +..++.+..+++|++|++++|.+..+++
T Consensus        94 ~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  172 (347)
T 4fmz_A           94 YIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP  172 (347)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             EccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh
Confidence            4555566666678888888888888888887766 6667777777777774 3334455566666666666666655543


Q ss_pred             CcccCCccccEEeccCCcCCCCCCC-------------------CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCC
Q 023443           82 NIGEFLPKLHTLVLTNNRLVNLVEI-------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL  142 (282)
Q Consensus        82 ~~~~~l~~L~~L~L~~N~l~~~~~~-------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L  142 (282)
                        +..+++|++|++++|.++.++++                   ..+..+++|+.|++++|.++.++.     +..+++|
T Consensus       173 --~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L  245 (347)
T 4fmz_A          173 --IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-----LANLSQL  245 (347)
T ss_dssp             --GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-----GTTCTTC
T ss_pred             --hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-----hhcCCCC
Confidence              33555555555555555554320                   014455666666666666666554     4566666


Q ss_pred             cEecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHH
Q 023443          143 RVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARL  221 (282)
Q Consensus       143 ~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~  221 (282)
                      ++|++++|.+.....+....      .+.....-...+.+++....+++|+.|++++|+++ ..|..++.+++|++|+++
T Consensus       246 ~~L~l~~n~l~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          246 TWLEIGTNQISDINAVKDLT------KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             CEEECCSSCCCCCGGGTTCT------TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             CEEECCCCccCCChhHhcCC------CcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence            67776665432211111111      11001111112222223357788999999999888 556778889999999999


Q ss_pred             HHhhhCCCCCCCCCCCCCCCCCCcccc
Q 023443          222 EKVLKSGQLPADLKIPDYDSGSKDVKE  248 (282)
Q Consensus       222 ~N~l~~g~iP~~l~~~~~~~~~~~~~~  248 (282)
                      +|.+  ..+|+ +........++...+
T Consensus       320 ~n~l--~~~~~-~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          320 QNHI--TDIRP-LASLSKMDSADFANQ  343 (347)
T ss_dssp             SSSC--CCCGG-GGGCTTCSEESSSCC
T ss_pred             CCcc--ccccC-hhhhhccceeehhhh
Confidence            9988  44444 444444444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=5.2e-21  Score=177.91  Aligned_cols=216  Identities=17%  Similarity=0.117  Sum_probs=145.6

Q ss_pred             ccCHHHHhcCC--CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC------------------CCC
Q 023443            3 RLTADLIWKSP--HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN------------------MPH   62 (282)
Q Consensus         3 ~l~~~~i~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~------------------~~~   62 (282)
                      .|+.+.+...+  .|..+++|++|+|++|.|+.+++ +..+++|++|+|++|.|++++.                  ...
T Consensus        40 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~  118 (487)
T 3oja_A           40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR  118 (487)
T ss_dssp             ECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECC
T ss_pred             EeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccc
Confidence            34445555433  57788888888888888876554 6677777777777777765431                  123


Q ss_pred             CCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCC-CCCCccEEEeeCCcCCccCCchHHHHhhCCC
Q 023443           63 LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT-SLPKLQFLSLLDNSITKKPNYRLYVIHKLKS  141 (282)
Q Consensus        63 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~  141 (282)
                      +++|++|++++|.++++++..+.++++|++|++++|.+++.++ ..+. .+++|+.|+|++|.|+.++.     +..+++
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~-----~~~l~~  192 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKG-----QVVFAK  192 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEEC-----CCCCTT
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCCccccccc-----cccCCC
Confidence            5677888888888888777666678888888888888887655 3554 67888888888888887765     345778


Q ss_pred             CcEecCcccHHHHH-HhccChhHHHHHhh-hccccccCCCCCCCcchhhcCCCeeeCCChhHHH--HHHHHhhcccChHH
Q 023443          142 LRVLDFKKERMEAA-SLFASEEMEEEAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII--AIKAAIVNSQTLEE  217 (282)
Q Consensus       142 L~~L~ls~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~~~~L~~  217 (282)
                      |++|++++|.+... ..|........+.. .+....+|..+.      .+++|+.+++++|.+.  .+|..+..++.|+.
T Consensus       193 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~------~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~  266 (487)
T 3oja_A          193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT  266 (487)
T ss_dssp             CCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC------CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred             CCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhc------cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence            88888888654321 00111111100000 023344666666      7889999999999998  78899999999999


Q ss_pred             HHHHHHhhhCCCCC
Q 023443          218 VARLEKVLKSGQLP  231 (282)
Q Consensus       218 L~l~~N~l~~g~iP  231 (282)
                      +++.......|.-|
T Consensus       267 l~~~~~~~~~~~~~  280 (487)
T 3oja_A          267 VAKQTVKKLTGQNE  280 (487)
T ss_dssp             HHHHHHHHHTSSSS
T ss_pred             EeccccccccCCCc
Confidence            99974443234433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=5.5e-20  Score=153.50  Aligned_cols=150  Identities=21%  Similarity=0.290  Sum_probs=132.4

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~   99 (282)
                      +.++++++.++.||..+.  ++++.|++++|.|+.++  .|..+++|++|+|++|+|+.+++..|.++++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            679999999999997654  79999999999999986  78999999999999999999988888999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC-C
Q 023443          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP-V  178 (282)
Q Consensus       100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  178 (282)
                      |+.+++ ..|.++++|++|+|++|+|+.++..   .|..+++|++|++++|.+                     ..++ .
T Consensus        92 l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l---------------------~~~~~~  146 (220)
T 2v9t_B           92 ITELPK-SLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKL---------------------QTIAKG  146 (220)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------SCCCTT
T ss_pred             CCccCH-hHccCCCCCCEEECCCCCCCEeCHH---HcCCCCCCCEEECCCCcC---------------------CEECHH
Confidence            999998 5789999999999999999998765   678999999999999863                     2233 3


Q ss_pred             CCCCCcchhhcCCCeeeCCChhHHHH
Q 023443          179 EVPNVSEEEEQQTPKVVAPTPEQIIA  204 (282)
Q Consensus       179 ~~~~~~~~~~l~~L~~L~Ls~N~l~~  204 (282)
                      .+.      .+++|+.++|++|.+.+
T Consensus       147 ~~~------~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          147 TFS------PLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTT------TCTTCCEEECCSSCEEC
T ss_pred             HHh------CCCCCCEEEeCCCCcCC
Confidence            344      68899999999998863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.1e-19  Score=152.54  Aligned_cols=151  Identities=21%  Similarity=0.228  Sum_probs=132.5

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      .-+.++.+++.++.+|..+.  ++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|.++++|++|+|++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45689999999999997653  89999999999999984  689999999999999999999999888999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP  177 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (282)
                      |.|+.+++ ..|..+++|++|++++|+|+.+|.    .+..+++|++|++++|++                     ..+|
T Consensus        98 N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l---------------------~~~~  151 (229)
T 3e6j_A           98 NQLTVLPS-AVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQL---------------------KSIP  151 (229)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEECCSSCC---------------------CCCC
T ss_pred             CcCCccCh-hHhCcchhhCeEeccCCcccccCc----ccccCCCCCEEECCCCcC---------------------CccC
Confidence            99999987 578899999999999999999998    679999999999999863                     2233


Q ss_pred             C-CCCCCcchhhcCCCeeeCCChhHHHH
Q 023443          178 V-EVPNVSEEEEQQTPKVVAPTPEQIIA  204 (282)
Q Consensus       178 ~-~~~~~~~~~~l~~L~~L~Ls~N~l~~  204 (282)
                      . .+.      .+++|+.+++++|.+.+
T Consensus       152 ~~~~~------~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          152 HGAFD------RLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTTT------TCTTCCEEECTTSCBCT
T ss_pred             HHHHh------CCCCCCEEEeeCCCccC
Confidence            3 333      78899999999998763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=3e-21  Score=180.29  Aligned_cols=61  Identities=7%  Similarity=-0.062  Sum_probs=45.6

Q ss_pred             hcCCCeeeCCChhHHH---HHHHHhhcccChHHHHHHHHhhhCCCCCCC-CCCCCCCCCCCccccc
Q 023443          188 EQQTPKVVAPTPEQII---AIKAAIVNSQTLEEVARLEKVLKSGQLPAD-LKIPDYDSGSKDVKEN  249 (282)
Q Consensus       188 ~l~~L~~L~Ls~N~l~---~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~-l~~~~~~~~~~~~~~~  249 (282)
                      .+++|+.|++++|+++   .+|..+..+++|++|++++|.+ .+.+|.. +........++...+.
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC-BCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC-CcccccchhccCccCCEEECcCCC
Confidence            7889999999999998   5667899999999999999999 4558865 3333344444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=7.2e-21  Score=179.68  Aligned_cols=105  Identities=24%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++|++|++++|.|+.++ ..|..+++|++|+|++|.|+++ | .|..+++|++|++++|.++.+|..   .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence            56677777777776665 4666667777777777776665 3 466667777777777777666654   5666777777


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCC
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  126 (282)
                      ++|.+++++....|+++++|++|++++|.++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccc
Confidence            7776666541125666666666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.82  E-value=2.4e-21  Score=178.97  Aligned_cols=201  Identities=21%  Similarity=0.247  Sum_probs=109.0

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      .+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++.+..+++|++|++++|.++++++  +..+++|++|
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  270 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL  270 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence            34444445555555554444333 33455555555555555555555556666666666666665544  3456666666


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMK  173 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~  173 (282)
                      ++++|.++++++   +..+++|+.|++++|+++.++.     +..+++|+.|++++|.+.....+...      ..+...
T Consensus       271 ~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~l------~~L~~L  336 (466)
T 1o6v_A          271 KLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDISPVSSL------TKLQRL  336 (466)
T ss_dssp             ECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCCGGGGGC------TTCCEE
T ss_pred             ECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCchhhccC------ccCCEe
Confidence            666666666543   5566666666666666666554     46667777777776543221111110      111000


Q ss_pred             cccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443          174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                      ......+.+.+....+++|+.|++++|+++.+++ +..+++|+.|++++|.+  ..+|..+
T Consensus       337 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~--~~~p~~~  394 (466)
T 1o6v_A          337 FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW--TNAPVNY  394 (466)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE--ECCCBCC
T ss_pred             ECCCCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc--cCCchhh
Confidence            0001111111222466777777777777775544 77777777777777777  3344443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=3.8e-21  Score=172.15  Aligned_cols=132  Identities=22%  Similarity=0.268  Sum_probs=89.6

Q ss_pred             CceeEEEecCCcccccc-cccc-CCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443           19 IKERELDLRGNKIAVIE-NLGA-TEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~-~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~   94 (282)
                      ..++.|+|++|+|+.++ ..+. .+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|.++++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            34677777777777666 3444 6777777777777777764  467777777777777777777776666777777777


Q ss_pred             ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      |++|.|+.+++ ..|.++++|+.|+|++|+|+.+|...|..+..+++|+.|++++|+
T Consensus       119 L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          119 LYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            77777777655 467777777777777777777776432222557777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=9.8e-20  Score=152.87  Aligned_cols=142  Identities=20%  Similarity=0.213  Sum_probs=124.8

Q ss_pred             CHHHHhcCCCCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCC
Q 023443            5 TADLIWKSPHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP   81 (282)
Q Consensus         5 ~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~   81 (282)
                      +.+.+...+. .-.++|++|+|++|.|+.+ |..+..+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++
T Consensus        27 ~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           27 RSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             TTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence            3334444333 2238899999999999987 478889999999999999999986  47899999999999999999999


Q ss_pred             CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        82 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      ..|..+++|++|++++|.|+.+|.  .+..+++|++|++++|+|+.++..   .+..+++|+.|++++|..
T Consensus       106 ~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCB
T ss_pred             hHhCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCCc
Confidence            988899999999999999999987  789999999999999999999875   578899999999999764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=4e-21  Score=180.46  Aligned_cols=178  Identities=17%  Similarity=0.133  Sum_probs=154.5

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++|++|++++|.|+.++ ..+..+++|++|++++|.|+.++  .|..+++|++|++++|+++++++..+.++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            78999999999999775 78899999999999999999885  6999999999999999999999887789999999999


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCc-CCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT  174 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (282)
                      ++|.+++++....++++++|++|++++|. +..+|..   .+..+++|++|++++|..                    ..
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l--------------------~~  162 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTSLNELEIKALSL--------------------RN  162 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTC--------------------CE
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccccCeeeccCCcc--------------------cc
Confidence            99999965321378999999999999998 6778754   578999999999998763                    22


Q ss_pred             ccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHh-hcccChHHHHHHHHhh
Q 023443          175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAI-VNSQTLEEVARLEKVL  225 (282)
Q Consensus       175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l-~~~~~L~~L~l~~N~l  225 (282)
                      ..|..+.      .+++|+.|+++.|.+..+|..+ ..+++|++|++++|.+
T Consensus       163 ~~~~~l~------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          163 YQSQSLK------SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             ECTTTTT------TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred             cChhhhh------ccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence            3466666      7889999999999999888775 5689999999999999

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=1.8e-21  Score=185.01  Aligned_cols=131  Identities=25%  Similarity=0.291  Sum_probs=119.0

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      +++++|+|++|+|+.|| ..|.++++|++|+|++|.|+.++  .|.++++|++|+|++|+|+++|+++|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47999999999999998 68999999999999999999986  6999999999999999999999999999999999999


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      ++|.|+++++ ..|+++++|++|++++|.++.++...  .++.+++|++|++++|++
T Consensus       132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCC
T ss_pred             CCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch--hhccchhhhhhcccCccc
Confidence            9999999997 57999999999999999998653221  578899999999999754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=1.7e-21  Score=182.97  Aligned_cols=123  Identities=21%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             cCHHHHhc--CCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (282)
Q Consensus         4 l~~~~i~~--~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~   78 (282)
                      ++.+.+..  +..|.++++|++|++++|+|+.++ ..|..+++|++|++++|.+++++  .|+.+++|++|++++|.+++
T Consensus        33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence            34444433  345777888888888888887665 66777888888888888887775  37777888888888887775


Q ss_pred             cC-CCcccCCccccEEeccCCc-CCCCCCCCCCCCCCCccEEEeeCCcCCc
Q 023443           79 IN-PNIGEFLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSITK  127 (282)
Q Consensus        79 ~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~  127 (282)
                      ++ +..+.++++|++|++++|. +..+++ ..|.++++|++|++++|.++.
T Consensus       113 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          113 LGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCE
T ss_pred             cchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCcccc
Confidence            42 2345577777777777776 555554 366777777777777777664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=1e-20  Score=182.14  Aligned_cols=112  Identities=26%  Similarity=0.277  Sum_probs=51.1

Q ss_pred             CCCCCCceeEEEecCCccc-ccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc--cCCCcccCC
Q 023443           14 HFFNAIKERELDLRGNKIA-VIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR--INPNIGEFL   87 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~-~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l   87 (282)
                      .|..+++|++|++++|.+. .+| ..+..+++|++|++++|.+..++  .|..+++|++|++++|.+..  ..+..+.++
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            4455555555555555554 344 34455555555555555554432  33444444444444444331  122223344


Q ss_pred             ccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC
Q 023443           88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        88 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  126 (282)
                      ++|++|++++|.++++++ ..|.++++|++|++++|+++
T Consensus       480 ~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          480 RNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCG
T ss_pred             CCCCEEECCCCCCCcCCh-hhhccccccCEEeCCCCCcc
Confidence            444444444444444443 23444444444444444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=7e-21  Score=187.99  Aligned_cols=219  Identities=17%  Similarity=0.149  Sum_probs=129.2

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++|+.|++++|.+..++ ..+..+++|+.|+|++|.|+.++  .|..+++|++|++++|.++++++..+.++++|++|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            45666666666666443 55566666666666666666552  4666666666666666666665555566666666666


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC-------------------c------------------hHHHHhh
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN-------------------Y------------------RLYVIHK  138 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-------------------~------------------~~~~l~~  138 (282)
                      ++|.++.+++ ..|.++++|+.|++++|.++.++.                   .                  ....+..
T Consensus       346 ~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~  424 (844)
T 3j0a_A          346 QKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR  424 (844)
T ss_dssp             CSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred             CCCCCCccCh-hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence            6666666655 356666666666666665554321                   0                  0112446


Q ss_pred             CCCCcEecCcccHHHHH---HhccChhHHHHHhhh----ccc------cccCCCCCCCcchhhcCCCeeeCCChhHHHHH
Q 023443          139 LKSLRVLDFKKERMEAA---SLFASEEMEEEAKKE----SMK------TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI  205 (282)
Q Consensus       139 l~~L~~L~ls~~~~~~~---~~~~~~~~~~~~~~~----~~~------~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i  205 (282)
                      +++|+.|++++|++...   ..+....   .+..+    +..      ...+..+.      .+++|+.|+|++|+|+.+
T Consensus       425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~---~L~~L~Ls~N~l~~~~~~~~~~~~~~------~l~~L~~L~Ls~N~l~~~  495 (844)
T 3j0a_A          425 VPHLQILILNQNRFSSCSGDQTPSENP---SLEQLFLGENMLQLAWETELCWDVFE------GLSHLQVLYLNHNYLNSL  495 (844)
T ss_dssp             CTTCCEEEEESCCCCCCCSSSSSCSCT---TCCBCEEESCCCSSSCCSCCCSSCSS------CBCCEECCCCCHHHHTTC
T ss_pred             CCccceeeCCCCcccccccccccccCC---ccccccCCCCccccccccccchhhhc------CcccccEEECCCCccccc
Confidence            77777777777653210   0011100   01111    111      11122233      788999999999999976


Q ss_pred             HH-HhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443          206 KA-AIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND  250 (282)
Q Consensus       206 p~-~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~  250 (282)
                      |+ .+..+++|++|++++|.+  ..+|+.... .....++...+..
T Consensus       496 ~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~~~-~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          496 PPGVFSHLTALRGLSLNSNRL--TVLSHNDLP-ANLEILDISRNQL  538 (844)
T ss_dssp             CTTSSSSCCSCSEEEEESCCC--SSCCCCCCC-SCCCEEEEEEECC
T ss_pred             ChhHccchhhhheeECCCCCC--CccChhhhh-ccccEEECCCCcC
Confidence            65 478999999999999999  556655443 3344444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.5e-21  Score=184.35  Aligned_cols=172  Identities=22%  Similarity=0.317  Sum_probs=83.9

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      ++|++|+|++|.|+.||   ..+++|++|++++|.|+++|.+..  +|++|++++|.|+++|+    .+++|++|++++|
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence            34555555555555444   224455555555555555444322  45555555555555443    2445555555555


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCC
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPV  178 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  178 (282)
                      .|+++|.     .+++|+.|++++|+|+.+|.     +.  ++|++|++++|++                     ..+|.
T Consensus       151 ~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~-----l~--~~L~~L~Ls~N~L---------------------~~lp~  197 (571)
T 3cvr_A          151 QLTMLPE-----LPTSLEVLSVRNNQLTFLPE-----LP--ESLEALDVSTNLL---------------------ESLPA  197 (571)
T ss_dssp             CCSCCCC-----CCTTCCEEECCSSCCSCCCC-----CC--TTCCEEECCSSCC---------------------SSCCC
T ss_pred             ccCcCCC-----cCCCcCEEECCCCCCCCcch-----hh--CCCCEEECcCCCC---------------------Cchhh
Confidence            5554432     23455555555555555544     11  4555555555432                     22333


Q ss_pred             CCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCC
Q 023443          179 EVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK  235 (282)
Q Consensus       179 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~  235 (282)
                       +.. .-......|+.|+|++|+|+.||..+.++++|+.|++++|.+ ++.+|..++
T Consensus       198 -~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l-~~~~p~~l~  251 (571)
T 3cvr_A          198 -VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL-SSRIRESLS  251 (571)
T ss_dssp             -CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC-CHHHHHHHH
T ss_pred             -HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC-CCcCHHHHH
Confidence             320 000011122666666666666666666666666666666666 455554443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=5.2e-21  Score=176.54  Aligned_cols=213  Identities=14%  Similarity=0.098  Sum_probs=165.6

Q ss_pred             CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      +..++++++|++|++++|.|+.+| .+..+++|++|++++|.|+++| ++.+++|++|++++|.+++++   +.++++|+
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~  109 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLT  109 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCC
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCC
Confidence            345667899999999999999987 6788999999999999999997 889999999999999999985   56899999


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh-
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE-  170 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~-  170 (282)
                      +|++++|.+++++    ++.+++|++|++++|+++.++      ++.+++|++|++++|.......+........+... 
T Consensus       110 ~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          110 YLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF  179 (457)
T ss_dssp             EEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred             EEECCCCcCCeec----CCCCCcCCEEECCCCccceec------cccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence            9999999999863    778999999999999999985      47899999999999742111111111111000000 


Q ss_pred             ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443          171 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND  250 (282)
Q Consensus       171 ~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~  250 (282)
                      +....+|  +.      .+++|+.|++++|+++.+  .++.+++|++|++++|.+  ..||  ++.......++...+..
T Consensus       180 n~l~~l~--l~------~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l--~~ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          180 NKITELD--VS------QNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKL--TEID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             SCCCCCC--CT------TCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCC--SCCC--CTTCTTCSEEECCSSCC
T ss_pred             Cccceec--cc------cCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcc--cccC--ccccCCCCEEEeeCCcC
Confidence            1222233  33      778999999999999987  389999999999999999  4587  66666666666666665


Q ss_pred             CCC
Q 023443          251 EKM  253 (282)
Q Consensus       251 ~~~  253 (282)
                      ...
T Consensus       246 ~~~  248 (457)
T 3bz5_A          246 TEL  248 (457)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=7.6e-20  Score=152.65  Aligned_cols=150  Identities=24%  Similarity=0.267  Sum_probs=123.7

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC---CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      +.+++++|.++.||..+  ...+++|+|++|.|+.++   .|..+++|++|+|++|+|+++++..|.++++|++|+|++|
T Consensus        14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            58899999999998655  346789999999999873   3788999999999999999998888888999999999999


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCC
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPV  178 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  178 (282)
                      .|+++++ ..|.++++|++|+|++|+|+.+++.   .|..+++|++|++++|.+                    ....|.
T Consensus        92 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l--------------------~~~~~~  147 (220)
T 2v70_A           92 RLENVQH-KMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQI--------------------TTVAPG  147 (220)
T ss_dssp             CCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCC--------------------CCBCTT
T ss_pred             ccCccCH-hHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcC--------------------CEECHH
Confidence            9999887 5688899999999999999988654   567889999999998763                    122355


Q ss_pred             CCCCCcchhhcCCCeeeCCChhHHH
Q 023443          179 EVPNVSEEEEQQTPKVVAPTPEQII  203 (282)
Q Consensus       179 ~~~~~~~~~~l~~L~~L~Ls~N~l~  203 (282)
                      .+.      .+++|+.|+|++|.+.
T Consensus       148 ~~~------~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          148 AFD------TLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTT------TCTTCCEEECCSCCEE
T ss_pred             Hhc------CCCCCCEEEecCcCCc
Confidence            555      7888999999999876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.81  E-value=9.9e-20  Score=145.21  Aligned_cols=136  Identities=29%  Similarity=0.377  Sum_probs=122.4

Q ss_pred             CCCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           16 FNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      ...++|++|++++|.|+  .+|..+..+++|++|++++|.|+.++.+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            34588999999999999  8998889999999999999999999889999999999999999999767777679999999


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      ++++|.|++++.+..+..+++|++|++++|+++.++.+....+..+++|++|+++++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            9999999998743488999999999999999999987444468899999999999865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=3.6e-20  Score=151.81  Aligned_cols=154  Identities=13%  Similarity=0.104  Sum_probs=126.1

Q ss_pred             CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ..+++|+.|++++|.|+.+| .+..+++|++|++++|.++.++.+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            45678999999999999888 67789999999999999888888889999999999999999855555678999999999


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCc-CCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT  174 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (282)
                      ++|.++...+ ..++.+++|++|++++|. ++.++.     +..+++|++|++++|.+                     .
T Consensus       120 s~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n~i---------------------~  172 (197)
T 4ezg_A          120 SHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGV---------------------H  172 (197)
T ss_dssp             CSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTBCC---------------------C
T ss_pred             cCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCCCC---------------------c
Confidence            9999987443 378899999999999998 888874     78899999999998763                     1


Q ss_pred             ccCCCCCCCcchhhcCCCeeeCCChhHHHH
Q 023443          175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIA  204 (282)
Q Consensus       175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~  204 (282)
                      .++ .+.      .+++|+.|++++|++..
T Consensus       173 ~~~-~l~------~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          173 DYR-GIE------DFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCT-TGG------GCSSCCEEEECBC----
T ss_pred             ChH-Hhc------cCCCCCEEEeeCcccCC
Confidence            122 222      67899999999998763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.9e-21  Score=183.19  Aligned_cols=129  Identities=26%  Similarity=0.337  Sum_probs=108.1

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++++.|++++|.|+.++ ..|..+++|++|++++|.++.++  .|.++++|++|++++|.++.+++..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            56888999999988776 57888889999999999888875  5888889999999999988888888888889999999


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccHH
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      ++|.++.+++ ..++++++|++|++++|.++.  +|.    .++++++|++|++++|++
T Consensus       108 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A          108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             TTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTTSCC
T ss_pred             cccccccCCC-ccccccccccEEecCCCccceecChh----hhcccCCCCEEeCcCCcc
Confidence            9998888876 368888889999999998885  566    578888899998888543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.6e-19  Score=150.70  Aligned_cols=145  Identities=25%  Similarity=0.366  Sum_probs=125.1

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCcccccc--ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIE--NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~   78 (282)
                      .++.+.+...+. .-...+++|+|++|.|+.++  ..|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.+++
T Consensus        17 ~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~   95 (220)
T 2v70_A           17 DCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN   95 (220)
T ss_dssp             ECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc
Confidence            344444544443 11346789999999999884  45889999999999999999986  69999999999999999999


Q ss_pred             cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +++..|.++++|++|+|++|.|+++++ ..|..+++|++|+|++|+|+.+++.   .|..+++|+.|++++|..
T Consensus        96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           96 VQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECCSCCE
T ss_pred             cCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEecCcCC
Confidence            999988899999999999999999976 5899999999999999999998554   678999999999999764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=5.5e-20  Score=159.93  Aligned_cols=165  Identities=24%  Similarity=0.294  Sum_probs=143.1

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      .++.+.+...+.+..+++|++|++++|.|+.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.++ .
T Consensus        52 ~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~  129 (291)
T 1h6t_A           52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-G  129 (291)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-G
T ss_pred             EccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-h
Confidence            4556667777788999999999999999999887 8889999999999999999999999999999999999999984 3


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE  162 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~  162 (282)
                       +..+++|++|++++|.+++++   .+..+++|+.|++++|+++.++.     +..+++|+.|++++|.+.         
T Consensus       130 -l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N~i~---------  191 (291)
T 1h6t_A          130 -LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHIS---------  191 (291)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCC---------
T ss_pred             -hcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCCcCC---------
Confidence             458999999999999999983   68899999999999999999876     688999999999997631         


Q ss_pred             HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH
Q 023443          163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK  206 (282)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip  206 (282)
                                  .+|. +.      .+++|+.|++++|+++..|
T Consensus       192 ------------~l~~-l~------~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          192 ------------DLRA-LA------GLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             ------------BCGG-GT------TCTTCSEEEEEEEEEECCC
T ss_pred             ------------CChh-hc------cCCCCCEEECcCCcccCCc
Confidence                        1221 33      6789999999999987655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.5e-21  Score=183.89  Aligned_cols=180  Identities=18%  Similarity=0.165  Sum_probs=98.0

Q ss_pred             CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCcccc---C-CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL---E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i---~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      ..+++|+.|++++|.+...... ..+++|++|++++|.++.+   + .+..+++|++|++++|.++++++. +..+++|+
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~  399 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE  399 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred             ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC
Confidence            3456666666666665533222 4466666666666666654   2 345566666666666666666555 34666666


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES  171 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~  171 (282)
                      +|++++|.+++.++...+..+++|++|++++|.+..++..   .+..+++|++|++++|....                 
T Consensus       400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~-----------------  459 (570)
T 2z63_A          400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQE-----------------  459 (570)
T ss_dssp             EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGG-----------------
T ss_pred             EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh---hhhcCCcCcEEECcCCcCcc-----------------
Confidence            6666666666554323455666666666666666544332   34556666666666654210                 


Q ss_pred             cccccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhh
Q 023443          172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l  225 (282)
                        ..+|..+.      .+++|+.|++++|+++.+ |.++.++++|++|++++|.+
T Consensus       460 --~~~p~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          460 --NFLPDIFT------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             --GEECSCCT------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             --ccchhhhh------cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence              11233333      444555555555555533 44455555555555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=1.8e-21  Score=185.25  Aligned_cols=175  Identities=18%  Similarity=0.251  Sum_probs=140.5

Q ss_pred             cCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443           11 KSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (282)
Q Consensus        11 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L   90 (282)
                      ....+..+++|+.|++++|.|..+| .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.++.++ . +..+++|
T Consensus        35 ~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~-l~~l~~L  111 (605)
T 1m9s_A           35 DAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-S-LKDLKKL  111 (605)
T ss_dssp             SEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-T-STTCTTC
T ss_pred             cccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-h-hccCCCC
Confidence            3334556788888999999988887 46778899999999999988877888899999999999988875 3 4588899


Q ss_pred             cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh
Q 023443           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE  170 (282)
Q Consensus        91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~  170 (282)
                      +.|+|++|.|+.++   .+..+++|+.|+|++|.++.++     .+..+++|+.|+|++|++.                 
T Consensus       112 ~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~-----------------  166 (605)
T 1m9s_A          112 KSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQIS-----------------  166 (605)
T ss_dssp             CEEECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSCCC-----------------
T ss_pred             CEEEecCCCCCCCc---cccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCcCC-----------------
Confidence            99999999988864   5778889999999999998884     4788899999999887631                 


Q ss_pred             ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          171 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       171 ~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                          .++. +.      .+++|+.|+|++|+|+.+| .+..+++|+.|++++|.+
T Consensus       167 ----~~~~-l~------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          167 ----DIVP-LA------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ----CCGG-GT------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             ----Cchh-hc------cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence                1111 33      6778889999999888774 688888999999998888

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=7.9e-21  Score=180.57  Aligned_cols=183  Identities=17%  Similarity=0.167  Sum_probs=148.2

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~   99 (282)
                      +..+-++-+++.||..+  .+++++|||++|.|+.++  .|.++++|++|+|++|+|+++++++|.++++|++|+|++|+
T Consensus        34 ~~~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TEEECTTSCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CEEECCCCCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            35677888899999765  358999999999999996  79999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCCC
Q 023443          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVE  179 (282)
Q Consensus       100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  179 (282)
                      |+++++ ..|.++++|++|++++|+++.++..   .|+++++|++|++++|.+..                   ...|..
T Consensus       112 l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~~---~~~~L~~L~~L~Ls~N~l~~-------------------~~~~~~  168 (635)
T 4g8a_A          112 IQSLAL-GAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQS-------------------FKLPEY  168 (635)
T ss_dssp             CCEECG-GGGTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCC-------------------CCCCGG
T ss_pred             CCCCCH-HHhcCCCCCCEEECCCCcCCCCChh---hhhcCcccCeeccccCcccc-------------------CCCchh
Confidence            999997 5899999999999999999999876   57899999999999976310                   012333


Q ss_pred             CCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChH----HHHHHHHhhhCCCCCCCCCCC
Q 023443          180 VPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLE----EVARLEKVLKSGQLPADLKIP  237 (282)
Q Consensus       180 ~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~----~L~l~~N~l~~g~iP~~l~~~  237 (282)
                      +.      .+++|++|++++|+|+.+ |..+..+.+++    .++++.|.+  ..+|+.....
T Consensus       169 ~~------~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l--~~i~~~~~~~  223 (635)
T 4g8a_A          169 FS------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKE  223 (635)
T ss_dssp             GG------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC--CEECTTTTTT
T ss_pred             hc------cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc--cccCcccccc
Confidence            33      788999999999999865 44555554443    244666777  5566555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=4.8e-22  Score=170.52  Aligned_cols=168  Identities=17%  Similarity=0.230  Sum_probs=112.5

Q ss_pred             CCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443           17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~   96 (282)
                      .+.++..+++++|.++.++ .+..+++|++|++++|.|+.++.+..+++|++|++++|+++++++  +..+++|++|+++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3445666667777777666 455677777777777777777766777777777777777777765  4567777777777


Q ss_pred             CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM  176 (282)
Q Consensus        97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (282)
                      +|++++++.   +.. ++|+.|++++|.++.++.     +..+++|+.|++++|++.                     .+
T Consensus        94 ~N~l~~l~~---~~~-~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~Ls~N~i~---------------------~~  143 (263)
T 1xeu_A           94 RNRLKNLNG---IPS-ACLSRLFLDNNELRDTDS-----LIHLKNLEILSIRNNKLK---------------------SI  143 (263)
T ss_dssp             SSCCSCCTT---CCC-SSCCEEECCSSCCSBSGG-----GTTCTTCCEEECTTSCCC---------------------BC
T ss_pred             CCccCCcCc---ccc-CcccEEEccCCccCCChh-----hcCcccccEEECCCCcCC---------------------CC
Confidence            777777664   222 677777777777776653     567777777777776521                     11


Q ss_pred             CCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          177 PVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       177 p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      + .+      ..+++|+.|++++|+++.+ ..+..+++|+.|++++|.+
T Consensus       144 ~-~l------~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          144 V-ML------GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             G-GG------GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             h-HH------ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence            1 12      2566777777777777766 5667777777777777777

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=4.6e-21  Score=179.10  Aligned_cols=200  Identities=18%  Similarity=0.123  Sum_probs=125.5

Q ss_pred             CCCCceeEEEecCCcccccc-ccccCC---CCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           16 FNAIKERELDLRGNKIAVIE-NLGATE---DQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip-~~~~~l---~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      ..+++|+.+++++|.+ .+| ..+..+   .+|+.|++++|.+..++.+..+++|++|++++|++++..+..+..+++|+
T Consensus       273 ~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  351 (520)
T 2z7x_B          273 TSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE  351 (520)
T ss_dssp             CCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred             ccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence            4455555555555555 444 222222   45666666666665554446677777777777777775455555777777


Q ss_pred             EEeccCCcCCCCCCC-CCCCCCCCccEEEeeCCcCCc-cCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhh
Q 023443           92 TLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSITK-KPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKK  169 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~  169 (282)
                      +|++++|.+++++.+ ..++.+++|++|++++|.++. +|..   .+..+++|+.|++++|++..               
T Consensus       352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~---------------  413 (520)
T 2z7x_B          352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTD---------------  413 (520)
T ss_dssp             EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCG---------------
T ss_pred             EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---hhccCccCCEEECcCCCCCc---------------
Confidence            777777777753310 146677777777777777776 6653   34566777777777765311               


Q ss_pred             hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCC-CCCCCCCCCCCcccc
Q 023443          170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPAD-LKIPDYDSGSKDVKE  248 (282)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~-l~~~~~~~~~~~~~~  248 (282)
                           ..|..+.        ++|+.|++++|+++.+|..+..+++|++|++++|.+  ..+|.. +........++...+
T Consensus       414 -----~~~~~l~--------~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          414 -----TIFRCLP--------PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL--KSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             -----GGGGSCC--------TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSS
T ss_pred             -----chhhhhc--------ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC--CccCHHHhccCCcccEEECcCC
Confidence                 1122111        478888888888888888888888888888888888  577776 444444444544444


Q ss_pred             c
Q 023443          249 N  249 (282)
Q Consensus       249 ~  249 (282)
                      .
T Consensus       479 ~  479 (520)
T 2z7x_B          479 P  479 (520)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=8e-21  Score=169.30  Aligned_cols=202  Identities=20%  Similarity=0.259  Sum_probs=147.6

Q ss_pred             CCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccc-cC--CCCCCCccCe-EeccCCcCcccCCCcccCCccccE
Q 023443           18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGT-LIINNNRITRINPNIGEFLPKLHT   92 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~   92 (282)
                      .+++++|+|++|+|+.|| ..|.++++|++|+|++|.+.+ +|  .|.+++++.. +.+++|+++.+++..|.++++|++
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            367999999999999999 578999999999999999855 55  5788888776 566789999999999999999999


Q ss_pred             EeccCCcCCCCCCCCCCCCCCCccEEEeeC-CcCCccCCchHHHHhhCC-CCcEecCcccHHH--HHHhccChhHHHHHh
Q 023443           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLK-SLRVLDFKKERME--AASLFASEEMEEEAK  168 (282)
Q Consensus        93 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~-~L~~L~ls~~~~~--~~~~~~~~~~~~~~~  168 (282)
                      |++++|.|+.+++ ..+....++..+++.+ |.+..++..   .|..+. .++.|++++|++.  ....|.......+..
T Consensus       109 L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~---~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          109 LLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             EEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred             ccccccccccCCc-hhhcccchhhhhhhcccccccccccc---chhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence            9999999999887 3666777788888865 678888875   344443 6888999986542  122333221111111


Q ss_pred             -hhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCCC
Q 023443          169 -KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLPA  232 (282)
Q Consensus       169 -~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP~  232 (282)
                       ..+....+|...+     ..+++|++|+|++|+|+.||.. +.++++|+.++.  +.+  ..+|+
T Consensus       185 ~~~n~l~~i~~~~f-----~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l--~~lP~  241 (350)
T 4ay9_X          185 SDNNNLEELPNDVF-----HGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL--KKLPT  241 (350)
T ss_dssp             TTCTTCCCCCTTTT-----TTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTC--CCCCC
T ss_pred             ccCCcccCCCHHHh-----ccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCc--CcCCC
Confidence             1133445665443     3788899999999999988854 667777766554  445  67774

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.80  E-value=1.3e-19  Score=141.75  Aligned_cols=134  Identities=26%  Similarity=0.390  Sum_probs=118.7

Q ss_pred             CCCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           16 FNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      ...++|+.|++++|.++  .+|..+..+++|++|++++|.++.++.++.+++|++|++++|.+++..+..+..+++|++|
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34578999999999999  8999889999999999999999999889999999999999999999556666679999999


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      ++++|.+++++....++.+++|++|++++|+++.++.+....+..+++|++|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999975223789999999999999999999874333689999999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.4e-21  Score=171.31  Aligned_cols=176  Identities=11%  Similarity=0.112  Sum_probs=141.1

Q ss_pred             CCCCceeEEEecCCcccc-cc----ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc---cCC-Ccc
Q 023443           16 FNAIKERELDLRGNKIAV-IE----NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR---INP-NIG   84 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~-ip----~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~---~~~-~~~   84 (282)
                      ..+++|++|++++|.++. ++    ..+..+++|++|+|++|.|+.++  .|+.+++|++|+|++|++.+   ++. ..+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            789999999999999984 22    33457899999999999999875  68899999999999999865   433 333


Q ss_pred             cCCccccEEeccCCcCCCCCCC--CCCCCCCCccEEEeeCCcCCcc-CCchHHHHhhC---CCCcEecCcccHHHHHHhc
Q 023443           85 EFLPKLHTLVLTNNRLVNLVEI--DPLTSLPKLQFLSLLDNSITKK-PNYRLYVIHKL---KSLRVLDFKKERMEAASLF  158 (282)
Q Consensus        85 ~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~l~~l---~~L~~L~ls~~~~~~~~~~  158 (282)
                      ..+++|++|++++|.++.++..  ..++.+++|++|+|++|+++.+ |.    .+..+   ++|++|++++|++      
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~----~~~~~~~~~~L~~L~Ls~N~l------  263 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP----SAPRCMWSSALNSLNLSFAGL------  263 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS----CCSSCCCCTTCCCEECCSSCC------
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh----hHHhccCcCcCCEEECCCCCC------
Confidence            5789999999999999876541  0146789999999999999976 55    34555   6999999999863      


Q ss_pred             cChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          159 ASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                                     ..+|..+.        ++|+.|+|++|+|+.+|. +..+++|++|++++|.+
T Consensus       264 ---------------~~lp~~~~--------~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          264 ---------------EQVPKGLP--------AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             ---------------CSCCSCCC--------SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred             ---------------Cchhhhhc--------CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence                           23454443        589999999999998765 78889999999999988

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=4.7e-20  Score=158.07  Aligned_cols=162  Identities=19%  Similarity=0.202  Sum_probs=137.8

Q ss_pred             HHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCccc
Q 023443            6 ADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGE   85 (282)
Q Consensus         6 ~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~   85 (282)
                      .+.+.+.+.+..+++|++|++++|.|+.+| .+..+++|++|++++|.|+.++.+..+++|++|++++|+++++++..  
T Consensus        28 ~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~--  104 (263)
T 1xeu_A           28 KQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP--  104 (263)
T ss_dssp             CSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC--
T ss_pred             CCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc--
Confidence            344445556778899999999999999998 67789999999999999999977999999999999999999987643  


Q ss_pred             CCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHH
Q 023443           86 FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEE  165 (282)
Q Consensus        86 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~  165 (282)
                      . ++|++|++++|.+++++   .+..+++|+.|++++|+++.++.     +..+++|+.|++++|++..           
T Consensus       105 ~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~-----l~~l~~L~~L~L~~N~i~~-----------  164 (263)
T 1xeu_A          105 S-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM-----LGFLSKLEVLDLHGNEITN-----------  164 (263)
T ss_dssp             C-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGG-----GGGCTTCCEEECTTSCCCB-----------
T ss_pred             c-CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCChH-----HccCCCCCEEECCCCcCcc-----------
Confidence            3 89999999999999975   58899999999999999999864     7899999999999976311           


Q ss_pred             HHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHH
Q 023443          166 EAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKA  207 (282)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~  207 (282)
                                + ..+.      .+++|+.|++++|.++..|.
T Consensus       165 ----------~-~~l~------~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          165 ----------T-GGLT------RLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             ----------C-TTST------TCCCCCEEEEEEEEEECCCE
T ss_pred             ----------h-HHhc------cCCCCCEEeCCCCcccCCcc
Confidence                      1 2233      67899999999999886653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=1.7e-19  Score=166.22  Aligned_cols=208  Identities=18%  Similarity=0.203  Sum_probs=110.3

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      .++.+.+...+.+.++++|++|++++|.++.+|...   ++|++|++++|.++.+|.++.+++|++|++++|+++++|. 
T Consensus       179 ~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-  254 (454)
T 1jl5_A          179 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-  254 (454)
T ss_dssp             ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-
T ss_pred             ECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc-
Confidence            344455555556777777777777777777766543   4777777777777777777778888888888888877654 


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHH-------------hhC-CCCcEecCc
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI-------------HKL-KSLRVLDFK  148 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l-------------~~l-~~L~~L~ls  148 (282)
                         .+++|++|++++|.++++|.  .   +++|+.|++++|+++.+|...- .+             ..+ ++|++|+++
T Consensus       255 ---~~~~L~~L~l~~N~l~~l~~--~---~~~L~~L~ls~N~l~~l~~~~~-~L~~L~l~~N~l~~i~~~~~~L~~L~Ls  325 (454)
T 1jl5_A          255 ---LPPSLEALNVRDNYLTDLPE--L---PQSLTFLDVSENIFSGLSELPP-NLYYLNASSNEIRSLCDLPPSLEELNVS  325 (454)
T ss_dssp             ---CCTTCCEEECCSSCCSCCCC--C---CTTCCEEECCSSCCSEESCCCT-TCCEEECCSSCCSEECCCCTTCCEEECC
T ss_pred             ---cccccCEEECCCCcccccCc--c---cCcCCEEECcCCccCcccCcCC-cCCEEECcCCcCCcccCCcCcCCEEECC
Confidence               23567777777777777654  2   2566677777776665543100 00             011 355555555


Q ss_pred             ccHHHHHHhccChhHHHHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHH---HHHHhhcc---------
Q 023443          149 KERMEAASLFASEEMEEEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA---IKAAIVNS---------  212 (282)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~---ip~~l~~~---------  212 (282)
                      +|++..  +....   ..+..+    +....+|.         .+++|++|++++|+++.   +|.++..+         
T Consensus       326 ~N~l~~--lp~~~---~~L~~L~L~~N~l~~lp~---------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i  391 (454)
T 1jl5_A          326 NNKLIE--LPALP---PRLERLIASFNHLAEVPE---------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV  391 (454)
T ss_dssp             SSCCSC--CCCCC---TTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred             CCcccc--ccccC---CcCCEEECCCCccccccc---------hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence            544321  00000   001111    11122222         35789999999999986   66788777         


Q ss_pred             ----cChHHHHHHHHhhhCC--CCCCCCCCCC
Q 023443          213 ----QTLEEVARLEKVLKSG--QLPADLKIPD  238 (282)
Q Consensus       213 ----~~L~~L~l~~N~l~~g--~iP~~l~~~~  238 (282)
                          ++|+.|++++|.+ .|  .||.++....
T Consensus       392 ~~~~~~L~~L~ls~N~l-~~~~~iP~sl~~L~  422 (454)
T 1jl5_A          392 PELPQNLKQLHVETNPL-REFPDIPESVEDLR  422 (454)
T ss_dssp             --------------------------------
T ss_pred             ccccCcCCEEECCCCcC-CccccchhhHhhee
Confidence                8899999999999 44  8998877653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.79  E-value=1.5e-22  Score=182.62  Aligned_cols=222  Identities=14%  Similarity=0.119  Sum_probs=151.5

Q ss_pred             CHHHHhcC-CCCCCCCceeEEEecCCcccc-----ccccccCCCCCcEEeccCCCcccc----C-C-------CCCCCcc
Q 023443            5 TADLIWKS-PHFFNAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKL----E-N-------MPHLNRL   66 (282)
Q Consensus         5 ~~~~i~~~-~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l~~i----~-~-------~~~l~~L   66 (282)
                      +...+... ..+..+++|++|+|++|.|+.     ++..+..+++|++|+|++|.+..+    | .       +..+++|
T Consensus        17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L   96 (386)
T 2ca6_A           17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   96 (386)
T ss_dssp             CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence            33344433 345678899999999999984     445577899999999999876533    3 2       4788999


Q ss_pred             CeEeccCCcCcc----cCCCcccCCccccEEeccCCcCCCCCCC---CCCCCC---------CCccEEEeeCCcCC--cc
Q 023443           67 GTLIINNNRITR----INPNIGEFLPKLHTLVLTNNRLVNLVEI---DPLTSL---------PKLQFLSLLDNSIT--KK  128 (282)
Q Consensus        67 ~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~l---------~~L~~L~L~~N~l~--~i  128 (282)
                      ++|+|++|.++.    ..+..+..+++|++|+|++|.++.....   ..+..+         ++|++|++++|+++  .+
T Consensus        97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~  176 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  176 (386)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence            999999999987    2233446899999999999999743320   023333         89999999999997  34


Q ss_pred             CCchHHHHhhCCCCcEecCcccHHHHHH---hcc-ChhHHHHHhhh----ccc-----cccCCCCCCCcchhhcCCCeee
Q 023443          129 PNYRLYVIHKLKSLRVLDFKKERMEAAS---LFA-SEEMEEEAKKE----SMK-----TLMPVEVPNVSEEEEQQTPKVV  195 (282)
Q Consensus       129 p~~~~~~l~~l~~L~~L~ls~~~~~~~~---~~~-~~~~~~~~~~~----~~~-----~~~p~~~~~~~~~~~l~~L~~L  195 (282)
                      +.. ...+..+++|++|++++|++....   +.. .......+..+    +..     ..+|..+.      .+++|+.|
T Consensus       177 ~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~------~~~~L~~L  249 (386)
T 2ca6_A          177 KEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK------SWPNLREL  249 (386)
T ss_dssp             HHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG------GCTTCCEE
T ss_pred             HHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc------cCCCcCEE
Confidence            421 115778999999999997654322   111 11111111111    111     11233333      67899999


Q ss_pred             CCChhHHHH-----HHHHhhc--ccChHHHHHHHHhhhCC----CCCCCC
Q 023443          196 APTPEQIIA-----IKAAIVN--SQTLEEVARLEKVLKSG----QLPADL  234 (282)
Q Consensus       196 ~Ls~N~l~~-----ip~~l~~--~~~L~~L~l~~N~l~~g----~iP~~l  234 (282)
                      +|++|+++.     +|..+..  +++|+.|++++|.+ .+    .+|..+
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i-~~~g~~~l~~~l  298 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVI  298 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC-BHHHHHHHHHHH
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC-CHHHHHHHHHHH
Confidence            999999873     5777744  99999999999998 33    266554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=5.5e-20  Score=181.61  Aligned_cols=117  Identities=18%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             CCCCCCCceeEEEecCCcc-ccc-cccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCccc-C-CCcccC
Q 023443           13 PHFFNAIKERELDLRGNKI-AVI-ENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRI-N-PNIGEF   86 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l-~~i-p~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~   86 (282)
                      ..|.++++|++|+|++|.+ ..| |..|.++++|++|+|++|.|+.+ | .|.++++|++|+|++|.+++. + ...+.+
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            3455555555555555532 244 34555555566666665555554 3 455555566666665555542 2 123445


Q ss_pred             CccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccC
Q 023443           87 LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP  129 (282)
Q Consensus        87 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip  129 (282)
                      +++|++|++++|.++++++...|+++++|++|++++|.++.+.
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            5556666666665555432124555556666666665555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=2.9e-20  Score=177.33  Aligned_cols=36  Identities=8%  Similarity=0.044  Sum_probs=19.8

Q ss_pred             CCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          190 QTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       190 ~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      ++|+.|+|++|+|+.||..+.++++|+.|++++|.+
T Consensus       261 ~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          261 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             ccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            345555555555555555555555555555555555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=2.3e-20  Score=176.18  Aligned_cols=183  Identities=19%  Similarity=0.213  Sum_probs=120.4

Q ss_pred             CCceeEEEecCCccc-cccccc-----cCC--------------------------CCCcEEeccCCCccccCCCCCCCc
Q 023443           18 AIKERELDLRGNKIA-VIENLG-----ATE--------------------------DQFDTIDLSDNEIVKLENMPHLNR   65 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~-~ip~~~-----~~l--------------------------~~L~~L~Ls~N~l~~i~~~~~l~~   65 (282)
                      .++|++|++++|.++ .+|..+     ..+                          .+|+.|++++|.+..++....+++
T Consensus       275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~  354 (562)
T 3a79_B          275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS  354 (562)
T ss_dssp             TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred             cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence            347888888888877 677544     112                          346667777777665544467788


Q ss_pred             cCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCC-CCCCCCCCccEEEeeCCcCCc-cCCchHHHHhhCCCCc
Q 023443           66 LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSITK-KPNYRLYVIHKLKSLR  143 (282)
Q Consensus        66 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~l~~l~~L~  143 (282)
                      |++|++++|.+++..+..+.++++|++|++++|++++++.+ ..++++++|++|++++|+++. +|..   .+..+++|+
T Consensus       355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~~L~  431 (562)
T 3a79_B          355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---TCAWAESIL  431 (562)
T ss_dssp             CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---CCCCCTTCC
T ss_pred             ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---hhcCcccCC
Confidence            88888888888886666667888888888888888876521 257788888888888888886 7764   356778888


Q ss_pred             EecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHH
Q 023443          144 VLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK  223 (282)
Q Consensus       144 ~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N  223 (282)
                      +|++++|++.. .                   .|..+.        ++|+.|++++|+|+.||..+..+++|++|++++|
T Consensus       432 ~L~l~~n~l~~-~-------------------~~~~l~--------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          432 VLNLSSNMLTG-S-------------------VFRCLP--------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             EEECCSSCCCG-G-------------------GGSSCC--------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred             EEECCCCCCCc-c-------------------hhhhhc--------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence            88888876421 0                   111110        2555555666655555555555555555555555


Q ss_pred             hhhCCCCCCC
Q 023443          224 VLKSGQLPAD  233 (282)
Q Consensus       224 ~l~~g~iP~~  233 (282)
                      .+  ..||..
T Consensus       484 ~l--~~l~~~  491 (562)
T 3a79_B          484 QL--KSVPDG  491 (562)
T ss_dssp             CC--CCCCTT
T ss_pred             CC--CCCCHH
Confidence            55  355554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=5.7e-19  Score=157.99  Aligned_cols=133  Identities=25%  Similarity=0.312  Sum_probs=99.1

Q ss_pred             CC-CCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443           15 FF-NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (282)
Q Consensus        15 ~~-~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L   90 (282)
                      |. ++++|++|+|++|+|+.++ ..|..+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|.++++|
T Consensus        59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence            44 7788888888888888776 56777888888888888888775  47778888888888888888877777778888


Q ss_pred             cEEeccCCcCCCCCCCCCC---CCCCCccEEEeeCCcCCccCCchHHHHhhCCC--CcEecCcccH
Q 023443           91 HTLVLTNNRLVNLVEIDPL---TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS--LRVLDFKKER  151 (282)
Q Consensus        91 ~~L~L~~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~--L~~L~ls~~~  151 (282)
                      ++|+|++|.|+.+|. ..|   ..+++|+.|+|++|+|+.+|..   .+..++.  ++.|++++|.
T Consensus       139 ~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          139 QKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSC
T ss_pred             CEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCC
Confidence            888888888888776 344   4677888888888888877754   4566665  3677777754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=6.9e-19  Score=143.70  Aligned_cols=125  Identities=24%  Similarity=0.302  Sum_probs=111.8

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC-C--CCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-N--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      +++++++|+|+.||..+.  .++++|++++|.|+.++ .  |..+++|++|+|++|+|+++++..|.++++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            789999999999997654  38999999999999986 2  889999999999999999998888889999999999999


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +|+++++ ..|.++++|++|+|++|+|+.+++.   .+..+++|++|++++|..
T Consensus        89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           89 KIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCB
T ss_pred             cCCccCH-HHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCCc
Confidence            9999987 5799999999999999999977554   578899999999999764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=6.2e-19  Score=167.77  Aligned_cols=166  Identities=24%  Similarity=0.296  Sum_probs=144.0

Q ss_pred             cccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCC
Q 023443            2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP   81 (282)
Q Consensus         2 ~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~   81 (282)
                      +.++.+.|...+.+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.++.++ 
T Consensus        48 L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-  125 (605)
T 1m9s_A           48 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-  125 (605)
T ss_dssp             CBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-
T ss_pred             EECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-
Confidence            45666677778889999999999999999998887 8889999999999999999999999999999999999999974 


Q ss_pred             CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccCh
Q 023443           82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASE  161 (282)
Q Consensus        82 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~  161 (282)
                      . +..+++|+.|+|++|.|+.+ +  .+..+++|+.|+|++|.|+.+++     +..+++|+.|+|++|.+.        
T Consensus       126 ~-l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~i~--------  188 (605)
T 1m9s_A          126 G-LVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHIS--------  188 (605)
T ss_dssp             G-GGGCTTCSEEECCSSCCCCC-G--GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCC--------
T ss_pred             c-ccCCCccCEEECCCCccCCc-h--hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcCCCCC--------
Confidence            3 46899999999999999998 3  68899999999999999998876     689999999999997631        


Q ss_pred             hHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH
Q 023443          162 EMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK  206 (282)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip  206 (282)
                                   .+| .+.      .+++|+.|+|++|++...|
T Consensus       189 -------------~l~-~l~------~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          189 -------------DLR-ALA------GLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             -------------BCG-GGT------TCTTCSEEECCSEEEECCC
T ss_pred             -------------CCh-HHc------cCCCCCEEEccCCcCcCCc
Confidence                         111 233      6789999999999987654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.77  E-value=2.2e-18  Score=140.89  Aligned_cols=125  Identities=21%  Similarity=0.290  Sum_probs=113.8

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcC
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL  100 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  100 (282)
                      +++++++|.|+.+|..+  .++|++|++++|.|+.+| .|..+++|++|+|++|.|+++++..|.++++|++|+|++|+|
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            67999999999999655  368999999999999997 789999999999999999999999889999999999999999


Q ss_pred             CCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       101 ~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +.+++ ..|.++++|++|+|++|.|+.+|..   .|..+++|+.|++++|..
T Consensus        91 ~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           91 RCIPP-RTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CBCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSCE
T ss_pred             CEeCH-HHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCCe
Confidence            99987 5899999999999999999999885   568899999999999654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.77  E-value=2.4e-19  Score=165.25  Aligned_cols=181  Identities=16%  Similarity=0.242  Sum_probs=110.1

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      ++|++|++++|.++.+|..   +++|++|++++|.+++++.+.  ++|++|++++|+++++| . +.++++|++|++++|
T Consensus        91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC
Confidence            4455555555555555532   256666666666666655332  57777777777777766 3 457778888888888


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh----cccc
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE----SMKT  174 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~----~~~~  174 (282)
                      +++++|.  .+   .+|++|++++|.++.+|.     ++.+++|++|++++|+....   ....  ..+..+    +...
T Consensus       164 ~l~~lp~--~~---~~L~~L~L~~n~l~~l~~-----~~~l~~L~~L~l~~N~l~~l---~~~~--~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          164 SLKKLPD--LP---PSLEFIAAGNNQLEELPE-----LQNLPFLTAIYADNNSLKKL---PDLP--LSLESIVAGNNILE  228 (454)
T ss_dssp             CCSCCCC--CC---TTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCSSC---CCCC--TTCCEEECCSSCCS
T ss_pred             cCcccCC--Cc---ccccEEECcCCcCCcCcc-----ccCCCCCCEEECCCCcCCcC---CCCc--CcccEEECcCCcCC
Confidence            8777665  22   477788888888777764     57778888888877653210   0000  001111    1122


Q ss_pred             ccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCC
Q 023443          175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPAD  233 (282)
Q Consensus       175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~  233 (282)
                      .+| .+.      .+++|++|++++|+++.+|..   .++|+.|++++|.+  ..+|..
T Consensus       229 ~lp-~~~------~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l--~~l~~~  275 (454)
T 1jl5_A          229 ELP-ELQ------NLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL--TDLPEL  275 (454)
T ss_dssp             SCC-CCT------TCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC--SCCCCC
T ss_pred             ccc-ccC------CCCCCCEEECCCCcCCccccc---ccccCEEECCCCcc--cccCcc
Confidence            233 233      677777777777777766642   35677777777777  446654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=1.1e-18  Score=143.00  Aligned_cols=141  Identities=16%  Similarity=0.203  Sum_probs=121.6

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccc--cCCCCCCCccCeEeccCCcCcccC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK--LENMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~--i~~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      .++.+.+...+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.  .+.|+.+++|++|++++|.+++..
T Consensus        50 ~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  128 (197)
T 4ezg_A           50 TLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI  128 (197)
T ss_dssp             EEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGG
T ss_pred             eccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHh
Confidence            345556666567889999999999999888776 66779999999999999997  348999999999999999999865


Q ss_pred             CCcccCCccccEEeccCCc-CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           81 PNIGEFLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +..+..+++|++|++++|. ++.++   .+..+++|++|++++|+++.++.     +..+++|++|++++|++
T Consensus       129 ~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          129 LTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             HHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEECBC--
T ss_pred             HHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEeeCccc
Confidence            6666799999999999998 88875   57889999999999999999874     78999999999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=4.9e-19  Score=172.04  Aligned_cols=186  Identities=17%  Similarity=0.124  Sum_probs=121.8

Q ss_pred             CCceeEEEecCCccccccccccCCCCCc-----EEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           18 AIKERELDLRGNKIAVIENLGATEDQFD-----TIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~-----~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      .+.++.|+|.+|.+..++..+.....|.     .++++.|.+...+ .|..++.|+.|+|++|.+..+++.++ .+++|+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~  250 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCS
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCC
Confidence            3568899999999988774432222222     2333444444334 68889999999999999999998887 899999


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES  171 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~  171 (282)
                      +|+|++|.|+.+|.  .|+.+++|++|+|++|.|+.+|.    .|+.+++|++|+|++|.+                   
T Consensus       251 ~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l-------------------  305 (727)
T 4b8c_D          251 RLYLNGNSLTELPA--EIKNLSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYFFDNMV-------------------  305 (727)
T ss_dssp             CCBCTTSCCSCCCG--GGGGGTTCCEEECTTSCCSSCCS----SGGGGTTCSEEECCSSCC-------------------
T ss_pred             EEEeeCCcCcccCh--hhhCCCCCCEEeCcCCcCCccCh----hhcCCCCCCEEECCCCCC-------------------
Confidence            99999999999887  89999999999999999999998    689999999999999762                   


Q ss_pred             cccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccC-hHHHHHHHHhhhCCCCCCCCCCCC
Q 023443          172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQT-LEEVARLEKVLKSGQLPADLKIPD  238 (282)
Q Consensus       172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~-L~~L~l~~N~l~~g~iP~~l~~~~  238 (282)
                        ..+|..+.      .+++|+.|+|++|.|+ .+|..+..+.. +..+++.+|.+ .|.+|..+....
T Consensus       306 --~~lp~~~~------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l-~~~~p~~l~~l~  365 (727)
T 4b8c_D          306 --TTLPWEFG------NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP-EIPLPHERRFIE  365 (727)
T ss_dssp             --CCCCSSTT------SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC-----
T ss_pred             --CccChhhh------cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc-cCcCccccceeE
Confidence              34677776      8999999999999999 77777766543 34578999999 799999887653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=5.2e-19  Score=168.67  Aligned_cols=204  Identities=18%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      ++|++|++++|.|+.||.   .+++|++|+|++|.|+.+|.  .+++|++|++++|.++++|.    .+++|++|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC
Confidence            567777777777776665   35667777777777776664  45666666666666666654    2345555555555


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHh--------------hCCCCcEecCcccHHHHHHhccChhHH
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH--------------KLKSLRVLDFKKERMEAASLFASEEME  164 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~--------------~l~~L~~L~ls~~~~~~~~~~~~~~~~  164 (282)
                      .|+.+|.  .   +++|++|++++|.++.+|... ..+.              .+++|+.|++++|.+....  ....  
T Consensus       132 ~l~~lp~--~---l~~L~~L~Ls~N~l~~l~~~~-~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~--~~~~--  201 (622)
T 3g06_A          132 QLTSLPV--L---PPGLQELSVSDNQLASLPALP-SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP--TLPS--  201 (622)
T ss_dssp             CCSCCCC--C---CTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCT--
T ss_pred             CCCcCCC--C---CCCCCEEECcCCcCCCcCCcc-CCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC--Cccc--
Confidence            5555543  1   244555555555554443310 0011              1255666666665432100  0000  


Q ss_pred             HHHhhh----ccccccCCCCC-------------CCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhC
Q 023443          165 EEAKKE----SMKTLMPVEVP-------------NVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKS  227 (282)
Q Consensus       165 ~~~~~~----~~~~~~p~~~~-------------~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~  227 (282)
                       .+..+    +....+|..+.             .++  ..+++|+.|++++|+|+.||.   .+++|+.|++++|.|  
T Consensus       202 -~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L--  273 (622)
T 3g06_A          202 -ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQL--  273 (622)
T ss_dssp             -TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC--
T ss_pred             -hhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCC--
Confidence             00000    11111111100             000  134566666666666666665   456666677777777  


Q ss_pred             CCCCCCCCCCCCCCCCCccccc
Q 023443          228 GQLPADLKIPDYDSGSKDVKEN  249 (282)
Q Consensus       228 g~iP~~l~~~~~~~~~~~~~~~  249 (282)
                      ..||..++.......++...+.
T Consensus       274 ~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          274 TRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CSCCGGGGGSCTTCEEECCSCC
T ss_pred             CcCCHHHhhccccCEEEecCCC
Confidence            4667666665555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=1.4e-19  Score=161.15  Aligned_cols=209  Identities=12%  Similarity=0.116  Sum_probs=157.1

Q ss_pred             CCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc-cCCCcccCCcc
Q 023443           13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR-INPNIGEFLPK   89 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~   89 (282)
                      +.+..+.. ++++.++++++.||..+  .+++++|+|++|+|+.+|  .|.++++|++|+|++|++.+ +++++|.++++
T Consensus         4 ~~~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X            4 HRICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             CSSSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             CCccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            33444433 67899999999999765  468999999999999997  58999999999999999855 78888889988


Q ss_pred             ccE-EeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc-cHH--HHHHhccChhH-H
Q 023443           90 LHT-LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK-ERM--EAASLFASEEM-E  164 (282)
Q Consensus        90 L~~-L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~-~~~--~~~~~~~~~~~-~  164 (282)
                      +.. +.+++|+++.+++ ..|..+++|++|++++|+++.++..   .+....++..|++.+ +++  .....|..... .
T Consensus        81 l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             CCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCC---TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             hhhhhcccCCcccccCc-hhhhhccccccccccccccccCCch---hhcccchhhhhhhccccccccccccchhhcchhh
Confidence            765 6777899999987 6899999999999999999999875   345566777888765 221  11122222211 0


Q ss_pred             HHHh-hhccccccCCCCCCCcchhhcCCCeeeCCC-hhHHHHHHH-HhhcccChHHHHHHHHhhhCCCCCCCCCC
Q 023443          165 EEAK-KESMKTLMPVEVPNVSEEEEQQTPKVVAPT-PEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPADLKI  236 (282)
Q Consensus       165 ~~~~-~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls-~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~iP~~l~~  236 (282)
                      ..+. ..+....+|..++      ...+++.++++ +|.++.||. ++..+++|++|++++|+|  ..||.....
T Consensus       157 ~~L~L~~N~i~~i~~~~f------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l--~~lp~~~~~  223 (350)
T 4ay9_X          157 VILWLNKNGIQEIHNSAF------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLE  223 (350)
T ss_dssp             EEEECCSSCCCEECTTSS------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC--CCCCSSSCT
T ss_pred             hhhccccccccCCChhhc------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc--CccChhhhc
Confidence            0000 1133445666655      56788999997 588889986 579999999999999999  888876543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=2.5e-18  Score=162.27  Aligned_cols=168  Identities=17%  Similarity=0.246  Sum_probs=135.0

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      .|+.+.|...+  ..+++|++|++++|.|+.||. +..  +|++|+|++|.|+++|.  .+++|++|++++|.|+++|. 
T Consensus        86 ~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~-  157 (571)
T 3cvr_A           86 EITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE-  157 (571)
T ss_dssp             ECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-
T ss_pred             ECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC-
Confidence            45566666555  567999999999999999998 654  99999999999999988  78999999999999999876 


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE  162 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~  162 (282)
                         .+++|++|++++|.|+++|.   |.  ++|+.|+|++|.|+.+|...-..+...+.|+.|++++|++          
T Consensus       158 ---~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l----------  219 (571)
T 3cvr_A          158 ---LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI----------  219 (571)
T ss_dssp             ---CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCC----------
T ss_pred             ---cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcc----------
Confidence               57899999999999999875   44  8999999999999999871000011123339999999873          


Q ss_pred             HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhccc
Q 023443          163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQ  213 (282)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~  213 (282)
                                 ..+|..+.      .+++|+.|+|++|.|+ .+|..+..++
T Consensus       220 -----------~~lp~~l~------~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          220 -----------THIPENIL------SLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -----------CCCCGGGG------GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             -----------eecCHHHh------cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence                       34566666      6889999999999998 7888877654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=136.70  Aligned_cols=123  Identities=26%  Similarity=0.307  Sum_probs=109.0

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      .++.+.+...+.- -.++|++|++++|.|+.+|..+..+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.++
T Consensus        16 ~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~   94 (193)
T 2wfh_A           16 RCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP   94 (193)
T ss_dssp             ECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             EcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence            3444555554432 236899999999999999999999999999999999999986  6999999999999999999999


Q ss_pred             CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc
Q 023443           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK  127 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  127 (282)
                      +..|.++++|++|+|++|.|+.+++ ..|..+++|+.|++++|++..
T Consensus        95 ~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           95 PRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred             HHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeec
Confidence            9988999999999999999999987 578999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=3e-17  Score=131.89  Aligned_cols=127  Identities=20%  Similarity=0.297  Sum_probs=113.0

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      ..+.+++++|+++.+|..+  .++|+.|++++|.+++++  .|..+++|++|++++|.++.+++..+..+++|++|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            3578999999999999554  379999999999999986  478999999999999999999998888999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      |.|+++++ ..+..+++|++|++++|.++.+|..   .+..+++|++|++++|..
T Consensus        86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred             CCccccCH-HHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEecCCCe
Confidence            99999987 5688999999999999999999885   457899999999999753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=6e-17  Score=132.12  Aligned_cols=123  Identities=20%  Similarity=0.256  Sum_probs=106.9

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccc--cccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcc
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITR   78 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~   78 (282)
                      .++.+.+...+.-. ..+|++|++++|.|+.++.  .+..+++|++|+|++|.|+++ | .|..+++|++|+|++|+|++
T Consensus        14 ~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~   92 (192)
T 1w8a_A           14 DCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             ECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             EcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc
Confidence            34555555544321 2389999999999998885  488999999999999999998 4 79999999999999999999


Q ss_pred             cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc
Q 023443           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK  127 (282)
Q Consensus        79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  127 (282)
                      +++..|.++++|++|++++|+|+++++ ..|..+++|++|++++|+++.
T Consensus        93 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           93 ISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccC
Confidence            999988899999999999999999876 589999999999999999984

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=1.7e-17  Score=161.22  Aligned_cols=181  Identities=18%  Similarity=0.256  Sum_probs=102.0

Q ss_pred             CccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCC
Q 023443           29 NKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID  107 (282)
Q Consensus        29 N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  107 (282)
                      |.+...+..+..+..|+.|+|++|.|..+| .+..+++|++|+|++|.|+.+|+.+ .++++|++|+|++|.|+.+|.  
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~--  287 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA--  287 (727)
T ss_dssp             -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCS--
T ss_pred             cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccCh--
Confidence            333434567888999999999999999887 6778999999999999999887655 589999999999999998876  


Q ss_pred             CCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChhHHHHHhhhccccccCCCCCCCcc
Q 023443          108 PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEEMEEEAKKESMKTLMPVEVPNVSE  185 (282)
Q Consensus       108 ~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  185 (282)
                      .|+.+++|++|+|++|.|+.+|.    .|+.+++|++|+|++|.+..  ...+...........+. .+.+.+.+     
T Consensus       288 ~~~~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~-~N~l~~~~-----  357 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLR-DNRPEIPL-----  357 (727)
T ss_dssp             SGGGGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHH-HCCCCCCC-----
T ss_pred             hhcCCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhc-cCcccCcC-----
Confidence            88999999999999999999988    58899999999999976431  22222222111111111 11111111     


Q ss_pred             hhhcCCCeeeCCChh--------HHH-HHHHHhhcccChHHHHHHHHhh
Q 023443          186 EEEQQTPKVVAPTPE--------QII-AIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       186 ~~~l~~L~~L~Ls~N--------~l~-~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                         ...+..++++.|        .|. .++..+.++..+....++.|.+
T Consensus       358 ---p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          358 ---PHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             ---CCC-----------------------------------------CC
T ss_pred             ---ccccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence               134567777776        333 2233455666667777777777

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=1.4e-16  Score=127.94  Aligned_cols=124  Identities=21%  Similarity=0.254  Sum_probs=106.5

Q ss_pred             cCHHHHhcCCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccC
Q 023443            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      ++.+.+...+ ..-.++|++|++++|+++.++ ..+..+++|++|++++|.|+.++  .|..+++|++|++++|.+++++
T Consensus        14 ~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   92 (177)
T 2o6r_A           14 CNSKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP   92 (177)
T ss_dssp             CCSSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ecCCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence            3333444433 223478999999999999888 56788999999999999999986  4789999999999999999999


Q ss_pred             CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccC
Q 023443           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP  129 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip  129 (282)
                      +..+..+++|++|++++|.++++++ ..+..+++|++|++++|++....
T Consensus        93 ~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           93 NGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccC
Confidence            9888899999999999999999987 56788999999999999998544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=5.9e-17  Score=153.12  Aligned_cols=124  Identities=27%  Similarity=0.346  Sum_probs=107.6

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      .|+.|+|++|.|+.+|. ++.+++|+.|+|++|.|+.+| .|+.+++|++|+|++|.|+++| . +..+++|++|+|++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G-VANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c-cCCCCCCcEEECCCC
Confidence            48899999999999987 888999999999999999888 7889999999999999999986 4 568999999999999


Q ss_pred             cCCCCC-CCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecC
Q 023443           99 RLVNLV-EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF  147 (282)
Q Consensus        99 ~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l  147 (282)
                      .|++++ + ..++.+++|+.|+|++|+++.+|+.....+..+++|+.|++
T Consensus       519 ~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999984 3 38899999999999999999887765445677899998875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=3.2e-16  Score=125.39  Aligned_cols=108  Identities=25%  Similarity=0.331  Sum_probs=96.9

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      ..+.+++++|.|+.+|..+  .++|++|+|++|.|++++  .|..+++|++|+|++|+|+++++..|.++++|++|+|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4578999999999999765  389999999999999984  689999999999999999999999988999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~  130 (282)
                      |+|+++++ ..|..+++|++|+|++|+++..+.
T Consensus        88 N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence            99999987 578999999999999999986553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.67  E-value=4.4e-16  Score=125.09  Aligned_cols=107  Identities=23%  Similarity=0.304  Sum_probs=96.8

Q ss_pred             eeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        21 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      -+.+++++|.++.+|..+.  ++|++|+|++|.|++++  .|..+++|++|+|++|+|+++|+.+|.++++|++|+|++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3789999999999997664  89999999999999984  6899999999999999999999998889999999999999


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~  130 (282)
                      +|+.+++ ..|..+++|++|+|++|++...+.
T Consensus        92 ~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence            9999987 468999999999999999987765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=1.1e-18  Score=156.18  Aligned_cols=211  Identities=17%  Similarity=0.124  Sum_probs=108.2

Q ss_pred             CCCCC-ceeEEEecCCcccccc-ccccCC-----CCCcEEeccCCCccccC--C----CCCC-CccCeEeccCCcCcccC
Q 023443           15 FFNAI-KERELDLRGNKIAVIE-NLGATE-----DQFDTIDLSDNEIVKLE--N----MPHL-NRLGTLIINNNRITRIN   80 (282)
Q Consensus        15 ~~~l~-~L~~L~Ls~N~l~~ip-~~~~~l-----~~L~~L~Ls~N~l~~i~--~----~~~l-~~L~~L~L~~N~l~~~~   80 (282)
                      |..++ +|++|+|++|.|+... ..+..+     ++|++|+|++|.++..+  .    +..+ ++|++|++++|.++..+
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            34454 5666666666665432 333332     56666666666666442  1    3333 56666666666666654


Q ss_pred             CCcc----cC-CccccEEeccCCcCCCCCCC---CCCCCCC-CccEEEeeCCcCCccCCchHH-HHhhC-CCCcEecCcc
Q 023443           81 PNIG----EF-LPKLHTLVLTNNRLVNLVEI---DPLTSLP-KLQFLSLLDNSITKKPNYRLY-VIHKL-KSLRVLDFKK  149 (282)
Q Consensus        81 ~~~~----~~-l~~L~~L~L~~N~l~~~~~~---~~~~~l~-~L~~L~L~~N~l~~ip~~~~~-~l~~l-~~L~~L~ls~  149 (282)
                      ...+    .. .++|++|++++|.++.....   ..+..++ +|++|++++|+++......+. .+..+ ++|++|++++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            4322    12 24666777777666632210   0223333 677777777777655443221 23444 4777777777


Q ss_pred             cHHHHHHhccChhHHHH-HhhhccccccCCCCCCCcc------hhhcCCCeeeCCChhH--------HHHHHHHhhcccC
Q 023443          150 ERMEAASLFASEEMEEE-AKKESMKTLMPVEVPNVSE------EEEQQTPKVVAPTPEQ--------IIAIKAAIVNSQT  214 (282)
Q Consensus       150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~------~~~l~~L~~L~Ls~N~--------l~~ip~~l~~~~~  214 (282)
                      |.+.....-........ ...+.....--..+.+.+.      ...+++|+.|+|++|.        +..++..+.++++
T Consensus       206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~  285 (362)
T 3goz_A          206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK  285 (362)
T ss_dssp             SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred             CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence            65432100000000000 0011000000011111100      1356788888888888        5566667788888


Q ss_pred             hHHHHHHHHhh
Q 023443          215 LEEVARLEKVL  225 (282)
Q Consensus       215 L~~L~l~~N~l  225 (282)
                      |++|++++|.+
T Consensus       286 L~~LdL~~N~l  296 (362)
T 3goz_A          286 IILVDKNGKEI  296 (362)
T ss_dssp             EEEECTTSCBC
T ss_pred             eEEEecCCCcC
Confidence            88888888887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=1e-16  Score=128.75  Aligned_cols=144  Identities=20%  Similarity=0.186  Sum_probs=115.2

Q ss_pred             cccCCCCCcEEeccCCCccccCCCCCCC-ccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCc
Q 023443           37 LGATEDQFDTIDLSDNEIVKLENMPHLN-RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKL  115 (282)
Q Consensus        37 ~~~~l~~L~~L~Ls~N~l~~i~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L  115 (282)
                      .+..+.+|+.|++++|.++.++.+..+. +|++|++++|.++++ + .+..+++|++|++++|.|+++++ ..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~-~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGE-GLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECS-CHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-c-ccccCCCCCEEECCCCcccccCc-chhhcCCCC
Confidence            4566899999999999999998777666 999999999999998 3 45689999999999999999986 345899999


Q ss_pred             cEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeee
Q 023443          116 QFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVV  195 (282)
Q Consensus       116 ~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L  195 (282)
                      ++|++++|.|+.+|...  .+..+++|++|++++|.+..                     +|....  .....+++|+.|
T Consensus        91 ~~L~L~~N~i~~~~~~~--~l~~l~~L~~L~l~~N~i~~---------------------~~~~~~--~~~~~l~~L~~L  145 (176)
T 1a9n_A           91 TELILTNNSLVELGDLD--PLASLKSLTYLCILRNPVTN---------------------KKHYRL--YVIYKVPQVRVL  145 (176)
T ss_dssp             CEEECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGGGG---------------------STTHHH--HHHHHCTTCSEE
T ss_pred             CEEECCCCcCCcchhhH--hhhcCCCCCEEEecCCCCCC---------------------cHhHHH--HHHHHCCcccee
Confidence            99999999999888621  47889999999999987521                     111100  001267899999


Q ss_pred             CCChhHHHHHHHH
Q 023443          196 APTPEQIIAIKAA  208 (282)
Q Consensus       196 ~Ls~N~l~~ip~~  208 (282)
                      +++.|.+.....+
T Consensus       146 d~~~n~~~~~~~~  158 (176)
T 1a9n_A          146 DFQKVKLKERQEA  158 (176)
T ss_dssp             TTEECCHHHHHHH
T ss_pred             CCCcCCHHHHHHH
Confidence            9999999865543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=6.5e-19  Score=157.59  Aligned_cols=230  Identities=11%  Similarity=0.072  Sum_probs=145.9

Q ss_pred             CCCceeEEEecCCcccccc-----ccccCCC-CCcEEeccCCCccccC--CCCCC-----CccCeEeccCCcCcccCCCc
Q 023443           17 NAIKERELDLRGNKIAVIE-----NLGATED-QFDTIDLSDNEIVKLE--NMPHL-----NRLGTLIINNNRITRINPNI   83 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~ip-----~~~~~l~-~L~~L~Ls~N~l~~i~--~~~~l-----~~L~~L~L~~N~l~~~~~~~   83 (282)
                      ..++|++|+|++|.|+.++     ..+..++ +|++|+|++|.|+...  .+..+     ++|++|+|++|.++..++..
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            3455999999999999766     4667788 8999999999999863  44443     89999999999999876652


Q ss_pred             ----ccCC-ccccEEeccCCcCCCCCCCCC----CCC-CCCccEEEeeCCcCCccCCchH-HHHhhCC-CCcEecCcccH
Q 023443           84 ----GEFL-PKLHTLVLTNNRLVNLVEIDP----LTS-LPKLQFLSLLDNSITKKPNYRL-YVIHKLK-SLRVLDFKKER  151 (282)
Q Consensus        84 ----~~~l-~~L~~L~L~~N~l~~~~~~~~----~~~-l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~-~L~~L~ls~~~  151 (282)
                          +..+ ++|++|++++|.|+..+. ..    +.. .++|++|++++|.++......+ ..+..++ +|++|++++|+
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence                2344 899999999999988764 23    334 3689999999999985433221 1456666 99999999976


Q ss_pred             HHHHHhccChhHHH----HHhhh-ccccccCCC-CCCCcch-hh-cCCCeeeCCChhHHHH-----HHHHhhcccChHHH
Q 023443          152 MEAASLFASEEMEE----EAKKE-SMKTLMPVE-VPNVSEE-EE-QQTPKVVAPTPEQIIA-----IKAAIVNSQTLEEV  218 (282)
Q Consensus       152 ~~~~~~~~~~~~~~----~~~~~-~~~~~~p~~-~~~~~~~-~~-l~~L~~L~Ls~N~l~~-----ip~~l~~~~~L~~L  218 (282)
                      +.............    .+..+ -..+.+... ...++.. .. .++|+.|+|++|+++.     +...+..+++|++|
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            53211000000000    01101 000111110 0000111 12 3478889999888853     34555777888888


Q ss_pred             HHHHHhhhCCC--------CCCCCCCCCCCCCCCccccc
Q 023443          219 ARLEKVLKSGQ--------LPADLKIPDYDSGSKDVKEN  249 (282)
Q Consensus       219 ~l~~N~l~~g~--------iP~~l~~~~~~~~~~~~~~~  249 (282)
                      ++++|.+  ..        ++..+........++...+.
T Consensus       259 ~L~~n~l--~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          259 YLDYDIV--KNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             EEEHHHH--TTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             EeccCCc--cccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            8888885  32        23344444444445554444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=6.8e-17  Score=128.66  Aligned_cols=106  Identities=24%  Similarity=0.287  Sum_probs=68.6

Q ss_pred             CCCCcEEeccCCCcc--ccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccE
Q 023443           41 EDQFDTIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF  117 (282)
Q Consensus        41 l~~L~~L~Ls~N~l~--~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~  117 (282)
                      .++|+.|++++|.++  .+| .+..+++|++|++++|.++.+  ..+..+++|++|++++|.+++.++ ..+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCE
Confidence            466777777777776  565 456677777777777777766  334467777777777777776333 24445677777


Q ss_pred             EEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443          118 LSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus       118 L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      |++++|.++.++...  .+..+++|++|++++|.
T Consensus       100 L~Ls~N~l~~~~~~~--~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          100 LNLSGNKLKDISTLE--PLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             EECBSSSCCSSGGGG--GGSSCSCCCEEECCSSG
T ss_pred             EeccCCccCcchhHH--HHhcCCCCCEEEeeCCc
Confidence            777777777665210  45666666666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1e-17  Score=147.68  Aligned_cols=175  Identities=13%  Similarity=0.059  Sum_probs=82.4

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccc--cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK--LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~--i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ++++.|++++|.+...+..+..+++|++|++++|.++.  ++ .+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            34445555555544433333344555555555555442  22 3344455555555555544322223334455555555


Q ss_pred             cCC-cCCC--CCCCCCCCCCCCccEEEeeCC-cCCc--cCCchHHHHhhCC-CCcEecCcccHH--HHHHhccChhHHHH
Q 023443           96 TNN-RLVN--LVEIDPLTSLPKLQFLSLLDN-SITK--KPNYRLYVIHKLK-SLRVLDFKKERM--EAASLFASEEMEEE  166 (282)
Q Consensus        96 ~~N-~l~~--~~~~~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~l~~l~-~L~~L~ls~~~~--~~~~~~~~~~~~~~  166 (282)
                      ++| .++.  ++.  .+..+++|++|++++| .++.  ++.    .+..++ +|++|++++++.  ....          
T Consensus       150 ~~~~~l~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~l~~~L~~L~l~~~~~~~~~~~----------  213 (336)
T 2ast_B          150 SGCSGFSEFALQT--LLSSCSRLDELNLSWCFDFTEKHVQV----AVAHVSETITQLNLSGYRKNLQKSD----------  213 (336)
T ss_dssp             TTCBSCCHHHHHH--HHHHCTTCCEEECCCCTTCCHHHHHH----HHHHSCTTCCEEECCSCGGGSCHHH----------
T ss_pred             CCCCCCCHHHHHH--HHhcCCCCCEEcCCCCCCcChHHHHH----HHHhcccCCCEEEeCCCcccCCHHH----------
Confidence            555 3432  222  3344455555555555 4442  222    344455 555555554421  0000          


Q ss_pred             HhhhccccccCCCCCCCcchhhcCCCeeeCCChhH-HH-HHHHHhhcccChHHHHHHHHh
Q 023443          167 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQ-II-AIKAAIVNSQTLEEVARLEKV  224 (282)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~ip~~l~~~~~L~~L~l~~N~  224 (282)
                               +|..+      ..+++|+.|++++|. ++ ..+..++++++|++|++++|.
T Consensus       214 ---------l~~~~------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          214 ---------LSTLV------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             ---------HHHHH------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             ---------HHHHH------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence                     00001      245567777777776 44 555666777777777776663

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=1e-16  Score=141.37  Aligned_cols=128  Identities=14%  Similarity=0.161  Sum_probs=96.8

Q ss_pred             CCceeEEEecCCccc--------------------ccc-ccccC--------CCCCcEEeccCCCccccC--CCCCCCcc
Q 023443           18 AIKERELDLRGNKIA--------------------VIE-NLGAT--------EDQFDTIDLSDNEIVKLE--NMPHLNRL   66 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~--------------------~ip-~~~~~--------l~~L~~L~Ls~N~l~~i~--~~~~l~~L   66 (282)
                      +++|+.|||++|+|.                    .|| ..|.+        +++|+.|+|++ .++.|+  +|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            788999999999998                    566 56777        99999999999 899886  79999999


Q ss_pred             CeEeccCCcCcccCCCcccCCccccEEeccCCcC----CCCCCCCCC---------------------------------
Q 023443           67 GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL----VNLVEIDPL---------------------------------  109 (282)
Q Consensus        67 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~---------------------------------  109 (282)
                      +.+++++|.+..+++.+|.++.++..+.+..+..    ..+.. ..|                                 
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-cccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            9999999999998888888777777776655221    11111 011                                 


Q ss_pred             -----------------CCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCccc
Q 023443          110 -----------------TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKE  150 (282)
Q Consensus       110 -----------------~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~  150 (282)
                                       ..+++|+.+++++|+++.||.+   .|.++++|+.+++.++
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT---TTTTCTTCCEEECCTT
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh---hhhCCCCCCEEECCcc
Confidence                             0267788888888888888877   5677888888888763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.60  E-value=1.7e-17  Score=146.25  Aligned_cols=180  Identities=12%  Similarity=0.136  Sum_probs=122.0

Q ss_pred             CCCCCCCceeEEEecCCcccc--ccccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCC-cCccc-CCCcccC
Q 023443           13 PHFFNAIKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNN-RITRI-NPNIGEF   86 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~   86 (282)
                      +.+..+++|++|++++|.++.  ++..+..+++|++|++++|.++.. + .++.+++|++|++++| .++.. .+..+.+
T Consensus        87 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~  166 (336)
T 2ast_B           87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  166 (336)
T ss_dssp             CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence            345677888888888888773  677777788888888888887743 3 5667888888888888 67641 2333457


Q ss_pred             CccccEEeccCC-cCCC--CCCCCCCCCCC-CccEEEeeCCc--CC--ccCCchHHHHhhCCCCcEecCcccHHHHHHhc
Q 023443           87 LPKLHTLVLTNN-RLVN--LVEIDPLTSLP-KLQFLSLLDNS--IT--KKPNYRLYVIHKLKSLRVLDFKKERMEAASLF  158 (282)
Q Consensus        87 l~~L~~L~L~~N-~l~~--~~~~~~~~~l~-~L~~L~L~~N~--l~--~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~  158 (282)
                      +++|++|++++| .++.  ++.  .+..++ +|++|++++|.  ++  .++.    .+..+++|+.|+++++....    
T Consensus       167 ~~~L~~L~l~~~~~l~~~~~~~--~~~~l~~~L~~L~l~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~l~----  236 (336)
T 2ast_B          167 CSRLDELNLSWCFDFTEKHVQV--AVAHVSETITQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSVMLK----  236 (336)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHH--HHHHSCTTCCEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCTTCC----
T ss_pred             CCCCCEEcCCCCCCcChHHHHH--HHHhcccCCCEEEeCCCcccCCHHHHHH----HHhhCCCCCEEeCCCCCcCC----
Confidence            788888888888 7775  333  566777 88888888884  43  4454    56778888888888765200    


Q ss_pred             cChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhH-HH-HHHHHhhcccChHHHHHHHH
Q 023443          159 ASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQ-II-AIKAAIVNSQTLEEVARLEK  223 (282)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~ip~~l~~~~~L~~L~l~~N  223 (282)
                                     ...+..+.      .+++|+.|++++|. +. .....++++++|+.|++++|
T Consensus       237 ---------------~~~~~~l~------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          237 ---------------NDCFQEFF------QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             ---------------GGGGGGGG------GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ---------------HHHHHHHh------CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence                           00111222      56688888888885 22 11125777888888887766

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1e-15  Score=119.37  Aligned_cols=106  Identities=27%  Similarity=0.286  Sum_probs=92.7

Q ss_pred             CCCCCcEEeccCCCcc--ccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCcc
Q 023443           40 TEDQFDTIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ  116 (282)
Q Consensus        40 ~l~~L~~L~Ls~N~l~--~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~  116 (282)
                      ..++|+.|++++|.++  .+| .+..+++|++|++++|.++++  ..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence            3578999999999999  677 678999999999999999998  445689999999999999999433 2667799999


Q ss_pred             EEEeeCCcCCccC--CchHHHHhhCCCCcEecCcccHH
Q 023443          117 FLSLLDNSITKKP--NYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       117 ~L~L~~N~l~~ip--~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +|++++|.++.++  .    .+..+++|++|++++|.+
T Consensus        92 ~L~ls~N~i~~~~~~~----~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIE----PLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             EEECTTSCCCSHHHHG----GGGGCTTCCEEECTTCGG
T ss_pred             EEECCCCcCCChHHHH----HHhhCCCCCEEeCcCCcc
Confidence            9999999999875  4    588999999999999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=6.4e-18  Score=138.44  Aligned_cols=113  Identities=21%  Similarity=0.274  Sum_probs=55.1

Q ss_pred             ccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCC
Q 023443           34 IENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP  113 (282)
Q Consensus        34 ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~  113 (282)
                      +|..+..+++|++|++++|.|+.+|.+..+++|++|++++|.++.+|.. +..+++|++|++++|.+++++   .+..++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~---~~~~l~  115 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS---GIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH---HHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC---ccccCC
Confidence            3334445555555555555555555444555555555555555554432 223455555555555555543   244445


Q ss_pred             CccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       114 ~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +|++|++++|+++.++..  ..+..+++|++|++++|..
T Consensus       116 ~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHH
T ss_pred             CCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCcc
Confidence            555555555555544321  0344455555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=6.8e-15  Score=117.58  Aligned_cols=104  Identities=28%  Similarity=0.375  Sum_probs=94.9

Q ss_pred             CCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEee
Q 023443           43 QFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL  121 (282)
Q Consensus        43 ~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~  121 (282)
                      ..+.+++++|.++.+| .+.  ++|++|+|++|+|+++++..|.++++|++|+|++|+|+++++ ..|.++++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECC
Confidence            4689999999999998 453  899999999999999999888899999999999999999998 578999999999999


Q ss_pred             CCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          122 DNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       122 ~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +|+|+.++..   .|..+++|++|++++|..
T Consensus        87 ~N~l~~~~~~---~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           87 DNQLKSIPRG---AFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SSCCCCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred             CCccCEeCHH---HhcCCCCCCEEEeCCCCC
Confidence            9999999885   578999999999999764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.57  E-value=1e-14  Score=117.02  Aligned_cols=103  Identities=23%  Similarity=0.376  Sum_probs=94.1

Q ss_pred             CcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeC
Q 023443           44 FDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD  122 (282)
Q Consensus        44 L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~  122 (282)
                      -+.+++++|.++.+| .+.  ++|++|+|++|+|+++++..|.++++|++|+|++|+|+++++ ..|.++++|++|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCC
Confidence            478999999999998 454  899999999999999999888899999999999999999997 5688999999999999


Q ss_pred             CcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          123 NSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       123 N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      |+|+.+|..   .|..+++|++|++++|.+
T Consensus        91 N~l~~l~~~---~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           91 NHLKSIPRG---AFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SCCCCCCTT---TTTTCTTCSEEECCSSCB
T ss_pred             CccceeCHH---HhccccCCCEEEeCCCCc
Confidence            999999985   478999999999999764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=2.7e-15  Score=141.79  Aligned_cols=117  Identities=21%  Similarity=0.233  Sum_probs=104.8

Q ss_pred             cccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC-
Q 023443            2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN-   80 (282)
Q Consensus         2 ~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~-   80 (282)
                      +.|+.+.|...+.|..+++|+.|+|++|.|+.+|..++.+++|+.|+|++|.|+++|.|+.+++|++|+|++|+|++++ 
T Consensus       446 L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~  525 (567)
T 1dce_A          446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAA  525 (567)
T ss_dssp             EECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSST
T ss_pred             EEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCC
Confidence            4567777777778999999999999999999999999999999999999999999999999999999999999999996 


Q ss_pred             CCcccCCccccEEeccCCcCCCCCCCCCCC----CCCCccEEEe
Q 023443           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLT----SLPKLQFLSL  120 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~l~~L~~L~L  120 (282)
                      |..+..+++|++|+|++|.|++.|+  .+.    .+++|+.|++
T Consensus       526 p~~l~~l~~L~~L~L~~N~l~~~~~--~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          526 IQPLVSCPRLVLLNLQGNSLCQEEG--IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TGGGGGCTTCCEEECTTSGGGGSSS--CTTHHHHHCTTCSEEEC
T ss_pred             cHHHhcCCCCCEEEecCCcCCCCcc--HHHHHHHHCcccCccCC
Confidence            6666799999999999999999887  333    3788998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.53  E-value=5.4e-17  Score=148.94  Aligned_cols=209  Identities=15%  Similarity=0.127  Sum_probs=104.6

Q ss_pred             CCCCCceeEEEecCCcccccc-cccc-----CCCCCcEEeccCCCcccc-----C-CCCCCCccCeEeccCCcCcccC--
Q 023443           15 FFNAIKERELDLRGNKIAVIE-NLGA-----TEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRIN--   80 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~-----~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~L~~N~l~~~~--   80 (282)
                      +..+++|++|++++|.++... ..+.     ..++|++|++++|.++..     + .+..+++|++|++++|.++...  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            345567777777777766321 1111     244667777777766652     2 3445666666666666665521  


Q ss_pred             ---CCcccCCccccEEeccCCcCCC-----CCCCCCCCCCCCccEEEeeCCcCCccCCchHH-HHh-hCCCCcEecCccc
Q 023443           81 ---PNIGEFLPKLHTLVLTNNRLVN-----LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY-VIH-KLKSLRVLDFKKE  150 (282)
Q Consensus        81 ---~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~l~-~l~~L~~L~ls~~  150 (282)
                         +..+..+++|++|++++|.++.     ++.  .+..+++|++|++++|.++......+. .+. ..++|+.|++++|
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence               2333345666666666666665     333  344455666666666655422211000 000 1135555555553


Q ss_pred             HHHHHHhccChhHHHHHhhhccccccCCCCCCC--cch-----hhcCCCeeeCCChhHHH-----HHHHHhhcccChHHH
Q 023443          151 RMEAASLFASEEMEEEAKKESMKTLMPVEVPNV--SEE-----EEQQTPKVVAPTPEQII-----AIKAAIVNSQTLEEV  218 (282)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~-----~~l~~L~~L~Ls~N~l~-----~ip~~l~~~~~L~~L  218 (282)
                      .+.................+.....-...+.+.  ...     ...++|+.|++++|+++     .+|..+..+++|++|
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            321110000000000000000000000000000  000     01458999999999988     788999999999999


Q ss_pred             HHHHHhh
Q 023443          219 ARLEKVL  225 (282)
Q Consensus       219 ~l~~N~l  225 (282)
                      ++++|.+
T Consensus       404 ~l~~N~i  410 (461)
T 1z7x_W          404 DLSNNCL  410 (461)
T ss_dssp             ECCSSSC
T ss_pred             ECCCCCC
Confidence            9999888

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.53  E-value=5e-17  Score=149.19  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             CCCCCceeEEEecCCccccc--cccccCCC----CCcEEeccCCCccc-----cC-CCCCCCccCeEeccCCcCcccCC-
Q 023443           15 FFNAIKERELDLRGNKIAVI--ENLGATED----QFDTIDLSDNEIVK-----LE-NMPHLNRLGTLIINNNRITRINP-   81 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~i--p~~~~~l~----~L~~L~Ls~N~l~~-----i~-~~~~l~~L~~L~L~~N~l~~~~~-   81 (282)
                      +..+++|++|++++|.|+..  ...+..+.    +|++|++++|.|+.     ++ .+..+++|++|++++|.++.... 
T Consensus        52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  131 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ  131 (461)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred             HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence            55667788888888877632  22233344    68888888888773     23 56777778888888777765322 


Q ss_pred             ----CcccCCccccEEeccCCcCCCCCC---CCCCCCCCCccEEEeeCCcCC
Q 023443           82 ----NIGEFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        82 ----~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~  126 (282)
                          ..+...++|++|++++|.++....   ...+..+++|+.|++++|.++
T Consensus       132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence                112234467777777776664220   013344556666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.52  E-value=3.8e-14  Score=125.55  Aligned_cols=106  Identities=21%  Similarity=0.288  Sum_probs=95.2

Q ss_pred             eEEEecCC-ccccccccccCCCCCcEEeccC-CCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           22 RELDLRGN-KIAVIENLGATEDQFDTIDLSD-NEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        22 ~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~-N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      ..++++++ +|+.||. +..+++|+.|+|++ |.|+.++  .|.++++|++|+|++|+|+++++..|.++++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35699998 9999999 99999999999996 9999986  699999999999999999999999998999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~  130 (282)
                      |+|+++|+ ..|..++ |+.|+|.+|++.....
T Consensus        90 N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSW-KTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence            99999997 4666665 9999999999985543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=3.2e-16  Score=128.30  Aligned_cols=133  Identities=30%  Similarity=0.359  Sum_probs=113.4

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC-CCCCCccCeEeccCCcCcccCCCcccCCccccE
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~   92 (282)
                      .+..+++|++|++++|.|+.+| .+..+++|++|++++|.|+.+|. +..+++|++|++++|++++++ . +..+++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~-~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G-IEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H-HHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c-cccCCCCCE
Confidence            5778899999999999999999 88889999999999999999984 566799999999999999986 3 468999999


Q ss_pred             EeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccC-------CchHHHHhhCCCCcEecCcc
Q 023443           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP-------NYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        93 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip-------~~~~~~l~~l~~L~~L~ls~  149 (282)
                      |++++|.++.++.+..+..+++|++|++++|+++..+       .+....+..+++|+.||...
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~  183 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMP  183 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGG
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcc
Confidence            9999999998764336889999999999999997552       22233588999999998443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=3.6e-13  Score=118.62  Aligned_cols=81  Identities=20%  Similarity=0.095  Sum_probs=52.3

Q ss_pred             CCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCcc-EEEeeCCcCCccCCchHHHHhhCCC
Q 023443           63 LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYRLYVIHKLKS  141 (282)
Q Consensus        63 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~-~L~L~~N~l~~ip~~~~~~l~~l~~  141 (282)
                      +++|+.+++++|+++.|++.+|.+|++|+.+++.+| ++.++. .+|.+|++|+ .+.+.+ .++.|+..   +|.+|++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEchh---hhhCCcc
Confidence            456666666666666666666666666666666666 666665 4666666666 666666 56666655   4566666


Q ss_pred             CcEecCcc
Q 023443          142 LRVLDFKK  149 (282)
Q Consensus       142 L~~L~ls~  149 (282)
                      |+.+++++
T Consensus       299 L~~l~l~~  306 (329)
T 3sb4_A          299 LRYVLATG  306 (329)
T ss_dssp             EEEEEECS
T ss_pred             CCEEEeCC
Confidence            66666644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=4.9e-13  Score=118.36  Aligned_cols=103  Identities=18%  Similarity=0.246  Sum_probs=92.2

Q ss_pred             cEEeccCC-CccccCCCCCCCccCeEeccC-CcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeC
Q 023443           45 DTIDLSDN-EIVKLENMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD  122 (282)
Q Consensus        45 ~~L~Ls~N-~l~~i~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~  122 (282)
                      ..++.+++ .|+.+|.+..+++|++|+|++ |.|+++++..|.++++|++|+|++|+|+++++ ..|.++++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCC
Confidence            45799998 999998899999999999996 99999999988999999999999999999988 5889999999999999


Q ss_pred             CcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          123 NSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       123 N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      |+|+.+|..   .+..++ |+.|++++|.+
T Consensus        90 N~l~~~~~~---~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           90 NALESLSWK---TVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             SCCSCCCST---TTCSCC-CCEEECCSSCC
T ss_pred             CccceeCHH---HcccCC-ceEEEeeCCCc
Confidence            999999985   344444 99999999654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.35  E-value=4.3e-13  Score=121.48  Aligned_cols=195  Identities=11%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             ceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443           20 KERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~   96 (282)
                      +|+.+.+.. .++.|+ ..|.+|.+|+.++++.|.++.++  .|. +.+|+.+.+.. .++.|+..+|.+|++|+.+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence            455555553 455554 44555555555555555555554  333 34555555542 2555555555555555555554


Q ss_pred             CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH-------HHHHhccChhHHHHHhh
Q 023443           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM-------EAASLFASEEMEEEAKK  169 (282)
Q Consensus        97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~-------~~~~~~~~~~~~~~~~~  169 (282)
                      .| ++.+.. .+|.+ .+|+.+.+ .+.++.|+..   +|.+|++|+.+++.++..       .....|.+...+..+..
T Consensus       235 ~~-l~~I~~-~aF~~-~~L~~i~l-p~~i~~I~~~---aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          235 EN-VSTIGQ-EAFRE-SGITTVKL-PNGVTNIASR---AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             TT-CCEECT-TTTTT-CCCSEEEE-ETTCCEECTT---TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             CC-ccCccc-ccccc-CCccEEEe-CCCccEEChh---HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            43 333333 24443 34444444 2334444443   334444444444433211       01111111100000000


Q ss_pred             hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhhhCCCCCCC
Q 023443          170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPAD  233 (282)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l~~g~iP~~  233 (282)
                      -.....++...+     ..+.+|+.+.+..| ++.|+ .+|.+| +|+.+.+..|.+  ..++..
T Consensus       308 ~~~i~~I~~~aF-----~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~--~~l~~~  363 (401)
T 4fdw_A          308 PESIRILGQGLL-----GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP--PQVFEK  363 (401)
T ss_dssp             CTTCCEECTTTT-----TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC--CBCCCS
T ss_pred             CCceEEEhhhhh-----cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC--cccccc
Confidence            000122222222     25667777777543 55554 456677 777777776666  444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.22  E-value=6.8e-12  Score=113.63  Aligned_cols=209  Identities=10%  Similarity=0.053  Sum_probs=149.8

Q ss_pred             CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443           13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~   89 (282)
                      .+|.++ +|+.+.+..+ ++.|+ ..|.+ .+|+.+.+.. .++.++  .|.+|++|+.+++++|.++.++...|. +.+
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~  204 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG  204 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence            357775 7999999877 88888 56766 4799999986 788885  899999999999999999999999995 799


Q ss_pred             ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCccc-HHHHHHhccChhHHHHHh
Q 023443           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKE-RMEAASLFASEEMEEEAK  168 (282)
Q Consensus        90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~-~~~~~~~~~~~~~~~~~~  168 (282)
                      |+.+.+..+ ++.++. .+|.++++|+.+.+..| ++.|+...   |.+ .+|+.+.+..+ .......|.....+..+.
T Consensus       205 L~~l~lp~~-l~~I~~-~aF~~~~~L~~l~l~~~-l~~I~~~a---F~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          205 IEEVLLPVT-LKEIGS-QAFLKTSQLKTIEIPEN-VSTIGQEA---FRE-SGITTVKLPNGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CSEEECCTT-CCEECT-TTTTTCTTCCCEECCTT-CCEECTTT---TTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEE
T ss_pred             cCEEEeCCc-hheehh-hHhhCCCCCCEEecCCC-ccCccccc---ccc-CCccEEEeCCCccEEChhHhhCCCCCCEEE
Confidence            999999854 888887 69999999999999875 78898874   455 68888888652 122223344332211111


Q ss_pred             hh-cccc-----ccCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCC
Q 023443          169 KE-SMKT-----LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDS  241 (282)
Q Consensus       169 ~~-~~~~-----~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~  241 (282)
                      .- +...     .++...+     ..+.+|+.+.+. +.++.|+ .+|..|++|+.+.+..| +  ..|+...+......
T Consensus       278 l~~~~~~~~~~~~I~~~aF-----~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l--~~I~~~aF~~~~L~  348 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCL-----EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V--TQINFSAFNNTGIK  348 (401)
T ss_dssp             EESSCCCCCTTCEECTTTT-----TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C--CEECTTSSSSSCCC
T ss_pred             eCCccccCCcccEECHHHh-----hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c--cEEcHHhCCCCCCC
Confidence            00 0011     1333222     378899999998 4577776 56889999999888544 5  55665554443333


Q ss_pred             C
Q 023443          242 G  242 (282)
Q Consensus       242 ~  242 (282)
                      .
T Consensus       349 ~  349 (401)
T 4fdw_A          349 E  349 (401)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=3.2e-13  Score=121.18  Aligned_cols=132  Identities=18%  Similarity=0.206  Sum_probs=59.5

Q ss_pred             ceeEEEecCCcccccc-cc----cc-CCCCCcEEeccCCCcccc--CCC-CCCCccCeEeccCCcCcccCCCcc-----c
Q 023443           20 KERELDLRGNKIAVIE-NL----GA-TEDQFDTIDLSDNEIVKL--ENM-PHLNRLGTLIINNNRITRINPNIG-----E   85 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip-~~----~~-~l~~L~~L~Ls~N~l~~i--~~~-~~l~~L~~L~L~~N~l~~~~~~~~-----~   85 (282)
                      .|+.|+|++|.|+... ..    +. ...+|+.|+|++|.|+..  ..+ ..+++|++|+|++|.|+......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4556666666655322 11    11 124566666666665432  122 233455566666665544322111     1


Q ss_pred             CCccccEEeccCCcCCCCCC---CCCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccH
Q 023443           86 FLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        86 ~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~  151 (282)
                      ..++|++|+|++|.|+....   ...+..+++|++|+|++|.|+......+ ..+...++|+.|++++|.
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            23455666666665543110   0022344555566666655553211100 133445555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.08  E-value=6.1e-12  Score=112.82  Aligned_cols=136  Identities=16%  Similarity=0.082  Sum_probs=101.7

Q ss_pred             CCceeEEEecCCcccc--ccccccCCCCCcEEeccCCCccccC--CC-----CCCCccCeEeccCCcCcccCC----Ccc
Q 023443           18 AIKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVKLE--NM-----PHLNRLGTLIINNNRITRINP----NIG   84 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~l~~i~--~~-----~~l~~L~~L~L~~N~l~~~~~----~~~   84 (282)
                      .++|++|+|++|.|+.  +......+++|+.|+|++|.|+..+  .+     ...++|++|+|++|.|+....    ..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            4689999999999973  3344445779999999999998642  22     356889999999999986322    222


Q ss_pred             cCCccccEEeccCCcCCCCCC---CCCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccHHH
Q 023443           85 EFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKERME  153 (282)
Q Consensus        85 ~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~~~  153 (282)
                      ..+++|++|+|++|.|+....   ...+...++|+.|+|++|.|+......+ ..+...++|++|++++|.+.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            468899999999999875320   0245667899999999999985433211 14667899999999998653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.08  E-value=1.1e-11  Score=116.95  Aligned_cols=199  Identities=13%  Similarity=0.055  Sum_probs=101.5

Q ss_pred             CCCceeEEEecCCcccc-----ccccccCCCCCcEEeccCCCcccc-----C-CCCCCCccCeEeccCCcCcccCCCccc
Q 023443           17 NAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRINPNIGE   85 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~L~~N~l~~~~~~~~~   85 (282)
                      ++++|++|+|++|.++.     ++..+..+++|+.|++++|.++.+     + .+.++++|++|++++|.+.+++ ..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHh
Confidence            45566666666665542     223334556666666666666522     1 2345566666666666666654 3334


Q ss_pred             CCccccEEeccCCcCC-C-CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHh---ccC
Q 023443           86 FLPKLHTLVLTNNRLV-N-LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASL---FAS  160 (282)
Q Consensus        86 ~l~~L~~L~L~~N~l~-~-~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~---~~~  160 (282)
                      .+++|+.|+++..... . .+....+..+++|+.++++++....+|.    .+..+++|++|+++++......+   +..
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI----LFPFAAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG----GGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH----HHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence            5566666666532211 0 0111244556666666666655555555    45667777777777754322211   111


Q ss_pred             hhHHHHHhhhccccccC-CCCCCCcchhhcCCCeeeCCC-----------hhHHH--HHHHHhhcccChHHHHHHHHhh
Q 023443          161 EEMEEEAKKESMKTLMP-VEVPNVSEEEEQQTPKVVAPT-----------PEQII--AIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       161 ~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l~~L~~L~Ls-----------~N~l~--~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      ...   +..+.....+. ..+.  .....+++|+.|+++           .|.++  .++..+..|++|++|++..|.+
T Consensus       317 ~~~---L~~L~L~~~~~~~~l~--~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l  390 (592)
T 3ogk_B          317 CPN---LEVLETRNVIGDRGLE--VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI  390 (592)
T ss_dssp             CTT---CCEEEEEGGGHHHHHH--HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred             CcC---CCEEeccCccCHHHHH--HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence            000   00000000000 0000  000246678888888           46666  3555566788888888866666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=7.1e-12  Score=118.34  Aligned_cols=205  Identities=15%  Similarity=0.071  Sum_probs=131.2

Q ss_pred             CCCCceeEEEecCCccc-----cccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcc---cCCCcccC
Q 023443           16 FNAIKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITR---INPNIGEF   86 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~---~~~~~~~~   86 (282)
                      .++++|++|++++|.++     .++..+..+++|+.|++++|.+.+++ .+..+++|+.|++++.....   .....+..
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            35789999999999986     45556678999999999999998886 66788899999997543221   11123346


Q ss_pred             CccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443           87 LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE  166 (282)
Q Consensus        87 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~  166 (282)
                      +++|+.|+++++....++.  .+..+++|++|++++|.++.....  ..+..+++|+.|+++++ .....+.........
T Consensus       269 ~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~~--~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDHC--TLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHHH--HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             cccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHHH--HHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCC
Confidence            7888888888876666665  677788899999998886532110  14678888888888842 211111000000000


Q ss_pred             Hhhhcccc--ccC------CCCCC--Ccc-hhhcCCCeeeCCChhHHH-HHHHHhhc-ccChHHHHHH----HHhh
Q 023443          167 AKKESMKT--LMP------VEVPN--VSE-EEEQQTPKVVAPTPEQII-AIKAAIVN-SQTLEEVARL----EKVL  225 (282)
Q Consensus       167 ~~~~~~~~--~~p------~~~~~--~~~-~~~l~~L~~L~Ls~N~l~-~ip~~l~~-~~~L~~L~l~----~N~l  225 (282)
                      +..+....  ..|      ..+.+  +.. ...+++|+.|+++.|+++ ..+..++. +++|+.|+++    .|.+
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            11111110  000      01110  001 135789999999999988 56667765 9999999985    5666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.97  E-value=3.5e-12  Score=120.40  Aligned_cols=199  Identities=11%  Similarity=0.084  Sum_probs=124.3

Q ss_pred             CCCceeEEEecCCcccc-cccccc-CCCCCcEEeccCC-Cccc--cCCC-CCCCccCeEeccCCcCcccCCC----cccC
Q 023443           17 NAIKERELDLRGNKIAV-IENLGA-TEDQFDTIDLSDN-EIVK--LENM-PHLNRLGTLIINNNRITRINPN----IGEF   86 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~-ip~~~~-~l~~L~~L~Ls~N-~l~~--i~~~-~~l~~L~~L~L~~N~l~~~~~~----~~~~   86 (282)
                      .+++|++|+|++|.++. .+..+. .+++|++|+|++| .++.  ++.+ .++++|++|++++|.+++....    ....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            57899999999999883 334443 6899999999999 5665  4433 4789999999999998764432    2346


Q ss_pred             CccccEEeccCCcCCCCCC--C-CCCCCCCCccEEEeeCC-cCCccCCchHHHHhhCCCCcEecCcccHH--HHHHhccC
Q 023443           87 LPKLHTLVLTNNRLVNLVE--I-DPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKERM--EAASLFAS  160 (282)
Q Consensus        87 l~~L~~L~L~~N~l~~~~~--~-~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~ls~~~~--~~~~~~~~  160 (282)
                      +++|++|++++|. ..+..  + ..+..+++|+.|++++| .+..++.    .+..+++|+.|+++....  ... .+..
T Consensus       183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~-~~~~  256 (594)
T 2p1m_B          183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT----LLQRAPQLEELGTGGYTAEVRPD-VYSG  256 (594)
T ss_dssp             CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH----HHHHCTTCSEEECSBCCCCCCHH-HHHH
T ss_pred             CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH----HHhcCCcceEcccccccCccchh-hHHH
Confidence            7899999999997 22221  0 01235799999999998 4555555    688999999999765211  000 0000


Q ss_pred             hhHHHHHhhhcccccc---CC-CCCCCcch-hhcCCCeeeCCChhHHH--HHHHHhhcccChHHHHHHHH
Q 023443          161 EEMEEEAKKESMKTLM---PV-EVPNVSEE-EEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVARLEK  223 (282)
Q Consensus       161 ~~~~~~~~~~~~~~~~---p~-~~~~~~~~-~~l~~L~~L~Ls~N~l~--~ip~~l~~~~~L~~L~l~~N  223 (282)
                      ...  .+........+   .. ....++.. ..+++|+.|++++|.++  .++..+.++++|++|++.+|
T Consensus       257 l~~--~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          257 LSV--ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHH--HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHH--HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            000  00000000000   00 00000111 25678888888888866  24455677888887777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.89  E-value=1.1e-10  Score=110.16  Aligned_cols=134  Identities=13%  Similarity=0.161  Sum_probs=95.6

Q ss_pred             CCCCceeEEEecCCcc-ccc---c------------ccccCCCCCcEEeccCCCcccc--CCCC-CCCccCeEeccCC-c
Q 023443           16 FNAIKERELDLRGNKI-AVI---E------------NLGATEDQFDTIDLSDNEIVKL--ENMP-HLNRLGTLIINNN-R   75 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l-~~i---p------------~~~~~l~~L~~L~Ls~N~l~~i--~~~~-~l~~L~~L~L~~N-~   75 (282)
                      ..+++|+.|+++++.. ..+   |            .....+++|+.|+|++|.++..  ..+. .+++|++|++++| .
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            3567899999999862 221   1            1234688999999999998764  2443 6889999999999 5


Q ss_pred             Cccc-CCCcccCCccccEEeccCCcCCCCCC--C-CCCCCCCCccEEEeeCCcCCccCCchHH-HHhhCCCCcEecCccc
Q 023443           76 ITRI-NPNIGEFLPKLHTLVLTNNRLVNLVE--I-DPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLRVLDFKKE  150 (282)
Q Consensus        76 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~--~-~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~~L~ls~~  150 (282)
                      ++.. .+.++.++++|++|++++|.+++...  + .....+++|+.|++++|. ..+....+. .+..+++|++|+++++
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            6552 23444579999999999999876432  0 123477899999999997 334333221 3466899999999986

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.68  E-value=1.2e-08  Score=86.92  Aligned_cols=102  Identities=28%  Similarity=0.310  Sum_probs=77.4

Q ss_pred             EeccCCCccccC-----CCCCCCccCeEeccCCcCcccCC--CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEE
Q 023443           47 IDLSDNEIVKLE-----NMPHLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS  119 (282)
Q Consensus        47 L~Ls~N~l~~i~-----~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~  119 (282)
                      ++++.|....++     ...++++|+.|+|++|+|+++++  ..+..+++|+.|+|++|.|+++..+..+..+ +|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            566777655443     12467899999999999998753  5556899999999999999988654455555 899999


Q ss_pred             eeCCcCCc-cC---CchHHHHhhCCCCcEecCcc
Q 023443          120 LLDNSITK-KP---NYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus       120 L~~N~l~~-ip---~~~~~~l~~l~~L~~L~ls~  149 (282)
                      |++|+++. +|   .++...+..+++|+.||-..
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE  260 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence            99999984 54   33334688999999998654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=3.6e-09  Score=85.31  Aligned_cols=121  Identities=14%  Similarity=0.177  Sum_probs=84.4

Q ss_pred             ccccccCCCCCcEEeccCC-Ccccc------CCCCCCCccCeEeccCCcCcccC----CCcccCCccccEEeccCCcCCC
Q 023443           34 IENLGATEDQFDTIDLSDN-EIVKL------ENMPHLNRLGTLIINNNRITRIN----PNIGEFLPKLHTLVLTNNRLVN  102 (282)
Q Consensus        34 ip~~~~~l~~L~~L~Ls~N-~l~~i------~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~  102 (282)
                      +...+...++|++|+|++| .|..-      ..+...++|++|+|++|.|..-.    ...+...++|++|+|++|.|+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445566788888888888 77642      14566788888899888887521    1222355789999999998875


Q ss_pred             -----CCCCCCCCCCCCccEEEe--eCCcCCccCCch-HHHHhhCCCCcEecCcccHHHHHH
Q 023443          103 -----LVEIDPLTSLPKLQFLSL--LDNSITKKPNYR-LYVIHKLKSLRVLDFKKERMEAAS  156 (282)
Q Consensus       103 -----~~~~~~~~~l~~L~~L~L--~~N~l~~ip~~~-~~~l~~l~~L~~L~ls~~~~~~~~  156 (282)
                           +..  .+...+.|++|+|  ++|.|..-.... ...+...++|+.|++++|.+....
T Consensus       108 ~g~~~l~~--~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          108 SGILALVE--ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHHHH--GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHH--HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence                 232  5667788999999  889988422111 115677899999999998775543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=1.2e-08  Score=82.20  Aligned_cols=112  Identities=16%  Similarity=0.045  Sum_probs=85.7

Q ss_pred             CCCCCceeEEEecCC-ccc-----cccccccCCCCCcEEeccCCCcccc-----C-CCCCCCccCeEeccCCcCcccC--
Q 023443           15 FFNAIKERELDLRGN-KIA-----VIENLGATEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRIN--   80 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N-~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~L~~N~l~~~~--   80 (282)
                      +...+.|++|+|++| .|.     .+...+...++|++|+|++|.|..-     . .+...+.|++|+|++|.|....  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456788999999999 887     2455666788999999999999852     1 4556688999999999998731  


Q ss_pred             --CCcccCCccccEEec--cCCcCCCCCC---CCCCCCCCCccEEEeeCCcCC
Q 023443           81 --PNIGEFLPKLHTLVL--TNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        81 --~~~~~~l~~L~~L~L--~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~  126 (282)
                        ...+...++|++|+|  ++|.|+.-..   ...+...+.|++|+|++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              223346778999999  8899975211   014556688999999999886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.52  E-value=3.4e-08  Score=87.97  Aligned_cols=37  Identities=11%  Similarity=0.215  Sum_probs=15.8

Q ss_pred             cCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcC
Q 023443           39 ATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRI   76 (282)
Q Consensus        39 ~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l   76 (282)
                      ..+++|+.|.|++|.-..++.+. +++|+.|++..+.+
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l  205 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGL  205 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBC
T ss_pred             hcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCC
Confidence            34455555555544211222222 44555555554444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.50  E-value=4.1e-07  Score=81.07  Aligned_cols=129  Identities=14%  Similarity=0.198  Sum_probs=102.0

Q ss_pred             CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443           13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~   89 (282)
                      ..+..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ++.++  .|.++.+|+.+.+.. .+..++..+|.+|.+
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence            45667778888888654 56665 67778888999888776 67674  678888899888854 477888888888999


Q ss_pred             ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      |+.+.+.++.++.++. ..|.+|.+|+.+.+..+ ++.|+..   +|.++++|+.+.+..
T Consensus       288 L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          288 LTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISYPK  342 (379)
T ss_dssp             CCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCCCT
T ss_pred             cccccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEECC
Confidence            9999998888888877 58889999999988754 7888877   567888888888865

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.50  E-value=7.1e-07  Score=79.54  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      |.++..|+.+.+..+ ++.|. ..|..+.+|+.+.+..+ ++.++  .|.++++|+.+.+.++.++.|+..+|.+|.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            344444444444433 33443 33444444444444322 33332  344444444444444444444444444444444


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCc
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY  131 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~  131 (282)
                      .+.+..+ ++.+.. .+|.+|.+|+.+.+..+ ++.|...
T Consensus       314 ~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~-v~~I~~~  350 (379)
T 4h09_A          314 SVTLPTA-LKTIQV-YAFKNCKALSTISYPKS-ITLIESG  350 (379)
T ss_dssp             EEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             EEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-cCEEchh
Confidence            4444322 333333 24444444444444332 4444433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=7.2e-08  Score=82.10  Aligned_cols=103  Identities=19%  Similarity=0.261  Sum_probs=73.3

Q ss_pred             CCCCCceeE--EEecCCccccccccc----cCCCCCcEEeccCCCccccCCC----CCCCccCeEeccCCcCcccCCCcc
Q 023443           15 FFNAIKERE--LDLRGNKIAVIENLG----ATEDQFDTIDLSDNEIVKLENM----PHLNRLGTLIINNNRITRINPNIG   84 (282)
Q Consensus        15 ~~~l~~L~~--L~Ls~N~l~~ip~~~----~~l~~L~~L~Ls~N~l~~i~~~----~~l~~L~~L~L~~N~l~~~~~~~~   84 (282)
                      |...+.|+.  ++++.|....++..+    ..+++|+.|+|++|.|++++.+    ..+++|+.|+|++|+|+++.. + 
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l-  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-L-  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-G-
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-h-
Confidence            444555665  778888766555322    4688999999999999987543    478999999999999998732 2 


Q ss_pred             cCCc--cccEEeccCCcCCC-CCCC-----CCCCCCCCccEEE
Q 023443           85 EFLP--KLHTLVLTNNRLVN-LVEI-----DPLTSLPKLQFLS  119 (282)
Q Consensus        85 ~~l~--~L~~L~L~~N~l~~-~~~~-----~~~~~l~~L~~L~  119 (282)
                      ..+.  +|+.|+|++|.+++ ++..     ..+..+++|+.||
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            2333  89999999999875 2210     1355778888876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.38  E-value=1.9e-06  Score=77.32  Aligned_cols=109  Identities=12%  Similarity=0.253  Sum_probs=90.9

Q ss_pred             ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCC
Q 023443           36 NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP  113 (282)
Q Consensus        36 ~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~  113 (282)
                      ..|..+..|+.+.+..+.. .++  .|.+++.|+.+.+. +.++.++..+|.+|.+|+.+.+..+ ++.+.. .+|.+|.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCT
T ss_pred             ceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCC
Confidence            4567788999999876543 453  78899999999996 6788999999999999999999765 777776 6899999


Q ss_pred             CccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       114 ~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +|+.+.+..+ ++.|+..   +|.+|++|+.+++.++..
T Consensus       335 ~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPES---AFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TCCEEEECTT-CCBCCGG---GGTTCTTCCEEEESSCHH
T ss_pred             CCCEEEECcc-cCEEhHh---HhhCCCCCCEEEECCcee
Confidence            9999999754 8899887   678999999999988654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.35  E-value=1.2e-06  Score=78.62  Aligned_cols=127  Identities=13%  Similarity=0.115  Sum_probs=98.3

Q ss_pred             CCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~   88 (282)
                      ..+|.++..|+.+.+..+. ..|. ..|.++.+|+.+.+. +.++.++  .|.++.+|+.+.+..+ ++.|...+|.+|.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            3468899999999997654 4555 788899999999996 5678886  7999999999999764 8899999999999


Q ss_pred             cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      +|+.+.+..+ ++.+.. .+|.+|++|+.+.+.++... +.     .+..+..|+.+.+..
T Consensus       335 ~L~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~-~~-----~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGSRSQ-WN-----AISTDSGLQNLPVAP  387 (394)
T ss_dssp             TCCEEEECTT-CCBCCG-GGGTTCTTCCEEEESSCHHH-HH-----TCBCCCCC-------
T ss_pred             CCCEEEECcc-cCEEhH-hHhhCCCCCCEEEECCceee-hh-----hhhccCCCCEEEeCC
Confidence            9999999654 888877 69999999999999987543 11     345677788777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.33  E-value=2e-06  Score=77.18  Aligned_cols=127  Identities=10%  Similarity=0.103  Sum_probs=83.0

Q ss_pred             CCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443           15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~   94 (282)
                      |.++..|+.+.+..+...--...|..+..++.+.+..+.+. -..|..+.+|+.+.+..+ ++.|+..+|.+|.+|+.++
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~  326 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID  326 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence            34444444444444322211134444555555444433211 015667788888888654 7788888888888888888


Q ss_pred             ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      +..+ ++.+.. .+|.+|.+|+.+.+..+ ++.|+..   +|.++++|+.+++..
T Consensus       327 lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          327 LPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINLKKVELPK  375 (394)
T ss_dssp             CCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTCCEEEEEG
T ss_pred             eCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEehHH---HhhCCCCCCEEEECC
Confidence            8644 777766 58888888988888776 7888776   567888888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.33  E-value=1.6e-06  Score=77.73  Aligned_cols=122  Identities=8%  Similarity=0.063  Sum_probs=99.8

Q ss_pred             CCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~   88 (282)
                      ...|.++..++.+.+..+.   ++ ..|..+.+|+.+.+..+ ++.++  +|.++++|+.+.+.. .++.|+..+|.+|.
T Consensus       269 ~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~  343 (394)
T 4fs7_A          269 GSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCT  343 (394)
T ss_dssp             SCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCT
T ss_pred             ccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCC
Confidence            3457788888888887654   44 56778999999999765 77775  799999999999975 48999999999999


Q ss_pred             cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEe
Q 023443           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL  145 (282)
Q Consensus        89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L  145 (282)
                      +|+.+.+..+ ++.+.. .+|.+|.+|+.+.+..+ ++.+..    .|.++++|+.+
T Consensus       344 ~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp~~-~~~~~~----~F~~c~~L~~I  393 (394)
T 4fs7_A          344 SLSNINFPLS-LRKIGA-NAFQGCINLKKVELPKR-LEQYRY----DFEDTTKFKWI  393 (394)
T ss_dssp             TCCEECCCTT-CCEECT-TTBTTCTTCCEEEEEGG-GGGGGG----GBCTTCEEEEE
T ss_pred             CCCEEEECcc-ccEehH-HHhhCCCCCCEEEECCC-CEEhhh----eecCCCCCcEE
Confidence            9999999877 888877 69999999999999764 555543    57888888765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.28  E-value=9.5e-08  Score=85.10  Aligned_cols=135  Identities=16%  Similarity=0.265  Sum_probs=89.9

Q ss_pred             CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCcccc--CCC--CCCCccCeEeccC--Cc------CcccCCCc
Q 023443           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL--ENM--PHLNRLGTLIINN--NR------ITRINPNI   83 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i--~~~--~~l~~L~~L~L~~--N~------l~~~~~~~   83 (282)
                      ..+++|+.|+|++|.-..++. +. +++|+.|+|..+.++.-  ..+  ..+++|+.|+|+.  |.      +..+.+.+
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            456889999999884224454 33 88999999999988642  233  3688999999863  22      21222211


Q ss_pred             c-cCCccccEEeccCCcCCCCCC--CCCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccHH
Q 023443           84 G-EFLPKLHTLVLTNNRLVNLVE--IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        84 ~-~~l~~L~~L~L~~N~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~~  152 (282)
                      . ..+++|++|+|++|.++....  +.....+++|+.|+|+.|.+.......+ ..+..+++|+.|++++|.+
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            1 257899999999998864111  0011347899999999999885211110 0346789999999998754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=2.7e-06  Score=67.59  Aligned_cols=92  Identities=14%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             ccccccCCCCCcEEeccCCCcccc--CCCCCCCccCeEeccCCc-CcccCCCcccC----CccccEEeccCCc-CCCCCC
Q 023443           34 IENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNNR-ITRINPNIGEF----LPKLHTLVLTNNR-LVNLVE  105 (282)
Q Consensus        34 ip~~~~~l~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~----l~~L~~L~L~~N~-l~~~~~  105 (282)
                      +|.....-..|+.||++++.|+..  ..+..+++|++|+|++|. |+.-.-.....    +++|++|++++|. |+.-. 
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-  131 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-  131 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-
Confidence            443332234688888888887753  356778888888888874 65521111122    2468888888874 66422 


Q ss_pred             CCCCCCCCCccEEEeeCCc-CC
Q 023443          106 IDPLTSLPKLQFLSLLDNS-IT  126 (282)
Q Consensus       106 ~~~~~~l~~L~~L~L~~N~-l~  126 (282)
                      +..+.++++|+.|++++++ ++
T Consensus       132 l~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCC
Confidence            1245667888888888875 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.84  E-value=8.3e-06  Score=64.79  Aligned_cols=88  Identities=16%  Similarity=0.115  Sum_probs=65.5

Q ss_pred             CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCC-cccc--CCCCCC----CccCeEeccCC-cCcccCCCccc
Q 023443           15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNE-IVKL--ENMPHL----NRLGTLIINNN-RITRINPNIGE   85 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~-l~~i--~~~~~l----~~L~~L~L~~N-~l~~~~~~~~~   85 (282)
                      ...-.+|+.||++++.|+..- ..+..+++|+.|+|++|. |+.-  ..+..+    ++|++|+|++| +|+.-.-....
T Consensus        57 ~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             STTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             cCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            334457999999999988433 445789999999999996 7753  344443    58999999998 48763223345


Q ss_pred             CCccccEEeccCCc-CCC
Q 023443           86 FLPKLHTLVLTNNR-LVN  102 (282)
Q Consensus        86 ~l~~L~~L~L~~N~-l~~  102 (282)
                      .+++|++|+++++. ++.
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            78999999999985 554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.79  E-value=3.7e-05  Score=58.03  Aligned_cols=55  Identities=25%  Similarity=0.245  Sum_probs=30.1

Q ss_pred             eEeccCCcCc--ccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC
Q 023443           68 TLIINNNRIT--RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        68 ~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  126 (282)
                      .++.+++.++  .+|..+.   ++|++|+|++|+|+.++. ..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence            4555555555  5544322   245556666666666555 45555566666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.65  E-value=7.1e-05  Score=56.43  Aligned_cols=54  Identities=24%  Similarity=0.378  Sum_probs=35.4

Q ss_pred             EEeccCCCcc--ccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCC
Q 023443           46 TIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV  101 (282)
Q Consensus        46 ~L~Ls~N~l~--~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  101 (282)
                      .++-+++.++  .+| .+.  .+|++|+|++|+|+.++++.|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666666  666 333  35667777777777777766666677777777776554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.08  E-value=0.00018  Score=58.06  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=77.3

Q ss_pred             cccCCCCCcEEeccCC-Ccccc------CCCCCCCccCeEeccCCcCcccCC----CcccCCccccEEeccCCcCCCCCC
Q 023443           37 LGATEDQFDTIDLSDN-EIVKL------ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNLVE  105 (282)
Q Consensus        37 ~~~~l~~L~~L~Ls~N-~l~~i------~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~  105 (282)
                      .+..-+.|+.|+|++| .|..-      ..+..-+.|+.|+|++|.|.....    .++..-+.|++|+|++|.|+.-..
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3445678999999885 77632      246667889999999999886322    222345689999999999875211


Q ss_pred             ---CCCCCCCCCccEEEeeCCcCCccCCc----hHHHHhhCCCCcEecCcccHHH
Q 023443          106 ---IDPLTSLPKLQFLSLLDNSITKKPNY----RLYVIHKLKSLRVLDFKKERME  153 (282)
Q Consensus       106 ---~~~~~~l~~L~~L~L~~N~l~~ip~~----~~~~l~~l~~L~~L~ls~~~~~  153 (282)
                         ...+..-+.|+.|+|++|....+...    .-..+..-+.|+.|+++.+...
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               01455566799999987643222221    1125677789999999886543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=5.7e-05  Score=61.05  Aligned_cols=110  Identities=12%  Similarity=0.122  Sum_probs=76.9

Q ss_pred             CCCceeEEEecCC-ccc-----cccccccCCCCCcEEeccCCCccccC------CCCCCCccCeEeccCCcCcccCC---
Q 023443           17 NAIKERELDLRGN-KIA-----VIENLGATEDQFDTIDLSDNEIVKLE------NMPHLNRLGTLIINNNRITRINP---   81 (282)
Q Consensus        17 ~l~~L~~L~Ls~N-~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i~------~~~~l~~L~~L~L~~N~l~~~~~---   81 (282)
                      +-+.|+.|+|++| +|.     .|-..+..-..|+.|+|++|.|....      .+..-+.|++|+|++|.|..-..   
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4567999999986 886     24455666789999999999998542      34566889999999999986321   


Q ss_pred             -CcccCCccccEEeccCCcCCCCCC------CCCCCCCCCccEEEeeCCcCC
Q 023443           82 -NIGEFLPKLHTLVLTNNRLVNLVE------IDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        82 -~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~L~~N~l~  126 (282)
                       .....-+.|+.|+|++|....+..      ...+..-+.|+.|+++.|.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence             222345679999998764311111      013445578999999877543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.84  E-value=1.6  Score=30.62  Aligned_cols=44  Identities=11%  Similarity=0.115  Sum_probs=19.7

Q ss_pred             CcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEee
Q 023443           76 ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL  121 (282)
Q Consensus        76 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~  121 (282)
                      ++.|....|.+|.+|+.+.+-.+ ++.+.. .+|.+|.+|+.+.+.
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~   51 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILT   51 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEEC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEc
Confidence            34444444444445544444432 333333 244455555544443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=82.25  E-value=2  Score=30.13  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             CccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           53 EIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        53 ~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      .++.|.  .|.++++|+.+.+-.+ ++.|....|.+|.+|+.+.+...
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            455564  6777777777777653 66777777777888887777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-34
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 2e-34
 Identities = 91/161 (56%), Positives = 116/161 (72%), Gaps = 4/161 (2%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           V+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  P
Sbjct: 1   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
            L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +L +L
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFK----KERMEAASLF 158
            N +T K +YRLYVI+K+  +RVLDF+    KER EA  +F
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF 161

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.2 bits (166), Expect = 4e-15
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 21/121 (17%)

Query: 46  TIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGE-------------------- 85
            + L+  ++  L ++  L  +  L +++NR+  + P +                      
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 86  -FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRV 144
             LP+L  L+L NNRL     I PL S P+L  L+L  NS+ ++   +  +   L S+  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

Query: 145 L 145
           +
Sbjct: 122 I 122

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 4e-10
 Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 29/158 (18%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I             EL L GN++  I  L +       +DL++N+I  L  +  L +L  
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLAPLSGLTKLTE 267

Query: 69  LIINNNRITRINPNIG--------------------EFLPKLHTLVLTNNRLVNLVEIDP 108
           L +  N+I+ I+P  G                      L  L  L L  N   N+ +I P
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN---NISDISP 324

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           ++SL KLQ L   +N ++   +     +  L ++  L 
Sbjct: 325 VSSLTKLQRLFFANNKVSDVSS-----LANLTNINWLS 357

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 8e-10
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 46  TIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
            + L  N I  +  +  L +L  L   NN+++ +  ++   L  ++ L   +N    + +
Sbjct: 311 YLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV-SSLAN-LTNINWLSAGHN---QISD 365

Query: 106 IDPLTSLPKLQFLSLLDN 123
           + PL +L ++  L L D 
Sbjct: 366 LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 9e-10
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I          K  EL L  N+I+ I  L         ++L++N++  +  + +L  L  
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKNLTY 311

Query: 69  LIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           L +  N I+ I+P +   L KL  L   NN    + ++  L +L  + +LS   N I+  
Sbjct: 312 LTLYFNNISDISP-VSS-LTKLQRLFFANN---KVSDVSSLANLTNINWLSAGHNQISDL 366

Query: 129 PNYRLYVIHKLKSLRVLD 146
                  +  L  +  L 
Sbjct: 367 TP-----LANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 10  WKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTL 69
                  N      L L  N I+ I  + +   +   +  ++N++  + ++ +L  +  L
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFANNKVSDVSSLANLTNINWL 356

Query: 70  IINNNRITRINPNIGEFLPKLHTLVLTNN 98
              +N+I+ + P     L ++  L L + 
Sbjct: 357 SAGHNQISDLTPLAN--LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 48  DLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
            L    +    +   L+++ TL  +   I  I   + E+L  L  +  +NN    L +I 
Sbjct: 28  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGV-EYLNNLTQINFSNN---QLTDIT 82

Query: 108 PLTSLPKLQFL 118
           PL +L KL  +
Sbjct: 83  PLKNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 43  QFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
             +++  ++N+I  +  +  L  L  L +N N++  I   +   L  L  L L NN++ N
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLAS-LTNLTDLDLANNQISN 255

Query: 103 LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           L    PL+ L KL  L L  N I+               
Sbjct: 256 LA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 42 DQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93
          DQ  T+      I  ++ + +LN L  +  +NN++T I P   + L KL  +
Sbjct: 44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 52  NEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS 111
           N+I     +    +    ++    +T         L ++ TL         +  ID +  
Sbjct: 13  NQIFTDTALAEKMKT---VLGKTNVTDTVSQ--TDLDQVTTLQADRL---GIKSIDGVEY 64

Query: 112 LPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152
           L  L  ++  +N +T         +  L  L  +     ++
Sbjct: 65  LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQI 100

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 7e-08
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 11/132 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRIN 80
           + LDL    +    +L   ++    ++   +    L  +  ++  L +L ++NNR+ R++
Sbjct: 25  QALDL--KGLRSDPDLV-AQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLD 81

Query: 81  PNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK----KPNYRLY 134
                    P L  L L+ N L +  E+D      KL+ L L  NS++     +  Y   
Sbjct: 82  DMSSIVQKAPNLKILNLSGNELKSERELDK-IKGLKLEELWLDGNSLSDTFRDQSTYISA 140

Query: 135 VIHKLKSLRVLD 146
           +  +   L  LD
Sbjct: 141 IRERFPKLLRLD 152

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 59  NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
                  L  L ++NN++      +    P+L  L+ + N L  + E         L+ L
Sbjct: 279 LCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPE-----LPQNLKQL 329

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRV 144
            +  N + + P+    +   ++ LR+
Sbjct: 330 HVEYNPLREFPD----IPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 31/96 (32%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            EL++  NK+  +  L                           RL  LI + N +  +  
Sbjct: 287 EELNVSNNKLIELPAL-------------------------PPRLERLIASFNHLAEVP- 320

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117
              E    L  L +  N L    +I    S+  L+ 
Sbjct: 321 ---ELPQNLKQLHVEYNPLREFPDI--PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 27  RGNKIAVIENLGATEDQFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRINPNIGE 85
              ++AV       + Q   ++L++  +  L E  PHL    +L+ + N +T +     E
Sbjct: 23  EQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLE---SLVASCNSLTELP----E 75

Query: 86  FLPKLHTLVLTNNRLVNLVEIDPLTSLPK 114
               L +L++ NN L  L ++ PL     
Sbjct: 76  LPQSLKSLLVDNNNLKALSDLPPLLEYLG 104

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 8e-07
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 43  QFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV 101
               +  SD  + K+ +++P       L + NN+IT I     + L  LHTL+L NN++ 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 102 NLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            +        L KL+ L L  N + + P      + +L
Sbjct: 69  KISP-GAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 105

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 46  TIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            +DL +N+I ++++    +L  L TLI+ NN+I++I+P     L KL  L L+ N+L  L
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 104 VEIDPLTSLPKLQFLSLLDNSITK 127
               P      LQ L + +N ITK
Sbjct: 95  ----PEKMPKTLQELRVHENEITK 114

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNN 74
           F   +K   L L  N++  +        Q   +  ++   V+      LN++  + +  N
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 75  RITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            +       G F  + KL  + + +  +  +    P    P L  L L  N ITK     
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTI----PQGLPPSLTELHLDGNKITKVDAAS 190

Query: 133 LYVIHKLKSLR 143
           L  ++ L  L 
Sbjct: 191 LKGLNNLAKLG 201

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 36/185 (19%)

Query: 10  WKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLENMPHLNRL 66
           ++      A +  +++L G  I  IE + AT         + LS N I K+ ++  +  L
Sbjct: 14  FEERKSVVATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENL 72

Query: 67  GTLIINNNRITRINPNIGEFL---------------------PKLHTLVLTNNRLVNLVE 105
             L +  N I +I                               L  L ++NN++ N  E
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 106 IDPLTSLPKLQFLSLLDNSITKKP-------NYRLYVIHKLKSLRVLDFK----KERMEA 154
           ID L +L KL+ L L  N +            YR+ V+ +L +L+ LD       ER +A
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192

Query: 155 ASLFA 159
                
Sbjct: 193 NVARG 197

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           + NNRI    P     L  LH+L ++ N L    EI    +L +    +  +N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANN 301

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 9e-05
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 59  NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
                      + +NN +  +  ++         L ++  R+ +L     L +L KL+  
Sbjct: 172 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRAR 230

Query: 119 SLLDNSITKKPN 130
           S    ++ K P 
Sbjct: 231 ST--YNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 11/55 (20%)

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ 116
             +    L I+  RI  +     E L KL      N           L  LP L+
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN-----------LKKLPTLE 242

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 48  DLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
           +L    +        LN +  +I NN+ I  +     ++LP +  L L  N+L ++  + 
Sbjct: 30  NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDIKPLA 87

Query: 108 PLT 110
            L 
Sbjct: 88  NLK 90

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 52  NEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS 111
           N+I  +  +  L +L TL + +N+I+ I P  G  L KL  L L+ N   ++ ++  L  
Sbjct: 144 NKITDITVLSRLTKLDTLSLEDNQISDIVPLAG--LTKLQNLYLSKN---HISDLRALAG 198

Query: 112 LPKLQFLSL 120
           L  L  L L
Sbjct: 199 LKNLDVLEL 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 85  EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRV 144
             L  L  L         + +I PL SLP L  + L +N I+         +    +L +
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----LANTSNLFI 221

Query: 145 LDF 147
           +  
Sbjct: 222 VTL 224

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 90  LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLD 146
           + +L +    L +    + L  L + Q + L D  +T+     +   +    +L  L+
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 46  TIDLSDNEIVKL---ENMPHLNRLGTLIINNNRITRINP-NIGEFL---PKLHTLVLTNN 98
           ++D+   E+      E +P L +   + +++  +T     +I   L   P L  L L +N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 99  RLVNLVEIDPLTSL----PKLQFLSL 120
            L ++     L  L     K+Q LSL
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 46  TIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV 104
            ++     +  L  ++P       L ++ N +   +        +L  L L    L  L 
Sbjct: 14  EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71

Query: 105 EIDPLTSL 112
               L  L
Sbjct: 72  VDGTLPVL 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.3
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.08
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.84
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.91

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-26  Score=180.69  Aligned_cols=148  Identities=58%  Similarity=0.902  Sum_probs=139.9

Q ss_pred             cccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCC
Q 023443            2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP   81 (282)
Q Consensus         2 ~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~   81 (282)
                      ||||.+.|...++|.++.++++|+|++|+|+.|+..+..+++|++|+|++|.|+.+++|..+++|++|++++|+++.+++
T Consensus         1 ~rLt~~~i~~~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~   80 (162)
T d1a9na_           1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE   80 (162)
T ss_dssp             CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECS
T ss_pred             CCCCHHHHhhhHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCc
Confidence            79999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443           82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        82 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~  149 (282)
                      .++..+++|++|++++|+|+.++.+..+..+++|++|++++|+++..|.++.+.++.+++|++||.+.
T Consensus        81 ~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          81 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             cccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence            98888999999999999999987655788999999999999999999987777899999999999776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-24  Score=184.26  Aligned_cols=175  Identities=21%  Similarity=0.210  Sum_probs=147.5

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      +++++|+|++|.|+.+| ..|..+++|++|+|++|.|+.++.++.+++|++|+|++|+++.+++.+ .++++|++|++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~L~l~~  109 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF  109 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT-TTCTTCCEEECCS
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            57899999999999888 678889999999999999999988888999999999999998886644 5889999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP  177 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (282)
                      |.+..++. ..+..+.+++.|++++|.++.++..   .+..+++|+.+++++|++                     ..++
T Consensus       110 ~~~~~~~~-~~~~~l~~l~~L~l~~n~l~~l~~~---~~~~l~~l~~l~l~~N~l---------------------~~~~  164 (266)
T d1p9ag_         110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNL---------------------TELP  164 (266)
T ss_dssp             SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCC---------------------SCCC
T ss_pred             cccceeec-cccccccccccccccccccceeccc---cccccccchhcccccccc---------------------cccC
Confidence            99998887 5788889999999999999988876   567788999999998763                     2233


Q ss_pred             C-CCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          178 V-EVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       178 ~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                      . .+.      .+++|++|+|++|+|+.||..+..+++|+.|++++|.+
T Consensus       165 ~~~~~------~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         165 AGLLN------GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTT------TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccc------cccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            3 333      67889999999999999998888888888888888765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-23  Score=176.21  Aligned_cols=196  Identities=17%  Similarity=0.189  Sum_probs=165.7

Q ss_pred             CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      .....+.+++.++++|+.||..+.  +++++|+|++|.|+.+|  .|.++++|++|+|++|+|+.++..  ..+++|++|
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~--~~l~~L~~L   82 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc--ccccccccc
Confidence            455667778999999999997653  68999999999999986  689999999999999999998753  579999999


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMK  173 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~  173 (282)
                      ++++|+++..+.  .+.++++|+.|++++|.+..++..   .+..+.+++.|++++|.+                     
T Consensus        83 ~Ls~N~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~l~~L~l~~n~l---------------------  136 (266)
T d1p9ag_          83 DLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNEL---------------------  136 (266)
T ss_dssp             ECCSSCCSSCCC--CTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCC---------------------
T ss_pred             cccccccccccc--ccccccccccccccccccceeecc---cccccccccccccccccc---------------------
Confidence            999999999887  889999999999999999988876   567889999999998762                     


Q ss_pred             cccCCCCCCCcchhhcCCCeeeCCChhHHHHHHH-HhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccc
Q 023443          174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKE  248 (282)
Q Consensus       174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~  248 (282)
                      ..+|..+.     ..++.++.+++++|+|+.+|. .+..+++|++|++++|+|  ..||++++.......++...+
T Consensus       137 ~~l~~~~~-----~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L--~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         137 KTLPPGLL-----TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CCCCTTTT-----TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEECCSC
T ss_pred             ceeccccc-----cccccchhcccccccccccCccccccccccceeecccCCC--cccChhHCCCCCCCEEEecCC
Confidence            23343333     267899999999999997774 578999999999999999  699999987766665555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=8.1e-24  Score=183.55  Aligned_cols=217  Identities=17%  Similarity=0.217  Sum_probs=157.0

Q ss_pred             ceeEEEecCCccc---cccccccCCCCCcEEeccC-CCcc-ccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           20 KERELDLRGNKIA---VIENLGATEDQFDTIDLSD-NEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        20 ~L~~L~Ls~N~l~---~ip~~~~~l~~L~~L~Ls~-N~l~-~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      +++.|+|++|.+.   .||..++.+++|++|+|++ |.++ .+| .|+++++|++|+|++|++.++++..+..+..|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            6899999999887   5788889999999999986 7887 477 78999999999999999999888888888999999


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCC-cEecCcccHHHHH--HhccChhHH-----
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSL-RVLDFKKERMEAA--SLFASEEME-----  164 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L-~~L~ls~~~~~~~--~~~~~~~~~-----  164 (282)
                      ++++|.+....+ ..+..++.++.+++++|.+. .+|.    .+..+..+ +.+++++++....  ..+......     
T Consensus       131 ~l~~N~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~----~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~  205 (313)
T d1ogqa_         131 DFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS  205 (313)
T ss_dssp             ECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred             ccccccccccCc-hhhccCcccceeecccccccccccc----cccccccccccccccccccccccccccccccccccccc
Confidence            999998776554 48889999999999999987 6776    46666665 7777777543210  011100000     


Q ss_pred             ---------------HHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHh
Q 023443          165 ---------------EEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKV  224 (282)
Q Consensus       165 ---------------~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~  224 (282)
                                     ..+..+    ......+..+      ..+++++.|+|++|+|+ .+|.+|+++++|++|++++|+
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~------~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence                           000000    0111112223      36788999999999999 899999999999999999999


Q ss_pred             hhCCCCCCCCCCCCCCCCCCccccc
Q 023443          225 LKSGQLPADLKIPDYDSGSKDVKEN  249 (282)
Q Consensus       225 l~~g~iP~~l~~~~~~~~~~~~~~~  249 (282)
                      | +|.||. ++.......++...++
T Consensus       280 l-~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         280 L-CGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             E-EEECCC-STTGGGSCGGGTCSSS
T ss_pred             c-cccCCC-cccCCCCCHHHhCCCc
Confidence            9 688985 3444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=2.7e-21  Score=156.14  Aligned_cols=171  Identities=19%  Similarity=0.209  Sum_probs=131.6

Q ss_pred             eeEEEecCCccccccccccCCCCCcEEeccCCCccc-cC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        21 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      .+.++.++++++.||..+  .+++++|+|++|+|+. ++  .|.++++|++|+|++|.+..+++..|..+++|++|+|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            467899999999999765  3689999999999986 43  678999999999999999999999998999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH---HhccChhHHHHHhhhcccc
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA---SLFASEEMEEEAKKESMKT  174 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~---~~~~~~~~~~~~~~~~~~~  174 (282)
                      |+|+.+++ ..|.++++|++|+|++|+|+.++..   .|..+++|++|++++|.....   .++........+......+
T Consensus        88 N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~~~---~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_          88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred             ccccccCH-HHHhCCCcccccccCCccccccCHH---HhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEe
Confidence            99999988 6899999999999999999999886   568899999999999654221   1111110000000012223


Q ss_pred             ccCCCCCCCcchhhcCCCeeeCCChhHHHHHH
Q 023443          175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK  206 (282)
Q Consensus       175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip  206 (282)
                      ..|.         .+.+++.++|+.|++++.+
T Consensus       164 ~~p~---------~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         164 GAPS---------KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CSST---------TTTTSBGGGSCTTTCCCCC
T ss_pred             CCCh---------hhcCCEeeecCHhhCcCCC
Confidence            3443         3457888899988876443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.6e-22  Score=168.77  Aligned_cols=197  Identities=18%  Similarity=0.223  Sum_probs=133.5

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEec-cCCcCcccCCCcccCCccccEEe
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLII-NNNRITRINPNIGEFLPKLHTLV   94 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L-~~N~l~~~~~~~~~~l~~L~~L~   94 (282)
                      +.+++|+|++|+|+.+| ..|.++++|++|++++|.|..++  .+..++.+..+.. ..|.++.+++..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            56899999999999998 57889999999999999998774  4566667777655 35567777777777777777777


Q ss_pred             ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChhHHHHHhhh-c
Q 023443           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEEMEEEAKKE-S  171 (282)
Q Consensus        95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~~~~~~~~~-~  171 (282)
                      +++|.+..++. ..+....+|+.+++++|+++.++..   .|..+++|+.|++++|++..  ...|.+......+... +
T Consensus       112 l~~n~~~~~~~-~~~~~~~~L~~l~l~~N~l~~i~~~---~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         112 LDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCcccccccc-cccchhcccchhhhccccccccChh---HhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            77777776665 4666677777777777777777654   45667777777777754311  1222222111111100 1


Q ss_pred             cc-cccCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhh
Q 023443          172 MK-TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       172 ~~-~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l  225 (282)
                      .. ...|..+.      .+++|++|++++|+++.++ .++..+++|+.|++++|.+
T Consensus       188 ~l~~i~~~~f~------~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         188 RVAHVHPHAFR------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCCEECTTTTT------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccChhHhh------hhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            12 22345555      6778888888888888544 5677888888888888777

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-21  Score=166.40  Aligned_cols=171  Identities=19%  Similarity=0.198  Sum_probs=94.3

Q ss_pred             ccCHHHHhcCC--CCCCCCceeEEEecCCcccccc-ccccCC-------------------------CCCcEEeccCCCc
Q 023443            3 RLTADLIWKSP--HFFNAIKERELDLRGNKIAVIE-NLGATE-------------------------DQFDTIDLSDNEI   54 (282)
Q Consensus         3 ~l~~~~i~~~~--~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l-------------------------~~L~~L~Ls~N~l   54 (282)
                      .|+.+.|...+  .|.++++|++|++++|.|..++ ..+..+                         ++|++|++++|.+
T Consensus        38 ~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~  117 (284)
T d1ozna_          38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL  117 (284)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCccc
Confidence            45555555533  4889999999999999987554 333334                         4455555555554


Q ss_pred             cccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCch
Q 023443           55 VKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR  132 (282)
Q Consensus        55 ~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~  132 (282)
                      ..++  .+..+.+|+.+++++|+++++++.+|..+++|+.|++++|.++.+++ ..|.++++|+++++++|+++.+++. 
T Consensus       118 ~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~~-  195 (284)
T d1ozna_         118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPH-  195 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT-
T ss_pred             ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-hhhccccccchhhhhhccccccChh-
Confidence            4432  33444445555555555555544444444455555555555554444 3444455555555555555444332 


Q ss_pred             HHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC-CCCCCCcchhhcCCCeeeCCChhHHHH
Q 023443          133 LYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP-VEVPNVSEEEEQQTPKVVAPTPEQIIA  204 (282)
Q Consensus       133 ~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l~~L~~L~Ls~N~l~~  204 (282)
                        .|..+++|++|++++|++                     ..++ ..+      +.+.+|+++++++|.+.+
T Consensus       196 --~f~~l~~L~~L~l~~N~i---------------------~~~~~~~~------~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         196 --AFRDLGRLMTLYLFANNL---------------------SALPTEAL------APLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             --TTTTCTTCCEEECCSSCC---------------------SCCCHHHH------TTCTTCCEEECCSSCEEC
T ss_pred             --Hhhhhhhccccccccccc---------------------cccccccc------ccccccCEEEecCCCCCC
Confidence              344445555555554432                     1122 222      367899999999998763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=4e-23  Score=179.08  Aligned_cols=197  Identities=19%  Similarity=0.210  Sum_probs=151.4

Q ss_pred             CCCcEEeccCCCccc---cC-CCCCCCccCeEeccC-CcCcc-cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCc
Q 023443           42 DQFDTIDLSDNEIVK---LE-NMPHLNRLGTLIINN-NRITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKL  115 (282)
Q Consensus        42 ~~L~~L~Ls~N~l~~---i~-~~~~l~~L~~L~L~~-N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L  115 (282)
                      .+++.|+|++|.+++   +| .++++++|++|+|++ |.+++ +|+.+ .++++|++|+|++|++.++++ ..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhcccccccccc-ccccchhhh
Confidence            468999999999985   56 799999999999986 88885 65554 699999999999999999877 478899999


Q ss_pred             cEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHHH---HHhccChhHHHHHhhh-ccc-----------------
Q 023443          116 QFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERMEA---ASLFASEEMEEEAKKE-SMK-----------------  173 (282)
Q Consensus       116 ~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~~---~~~~~~~~~~~~~~~~-~~~-----------------  173 (282)
                      +++++++|.+. .+|.    .+.+++.|+++++++|+...   ..++........+... +..                 
T Consensus       128 ~~l~l~~N~~~~~~p~----~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~  203 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD  203 (313)
T ss_dssp             CEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEE
T ss_pred             cccccccccccccCch----hhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999987 5566    68999999999999965421   1111111100000000 000                 


Q ss_pred             -------cccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcc
Q 023443          174 -------TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDV  246 (282)
Q Consensus       174 -------~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~  246 (282)
                             ..+|..+      ..++.++.+++++|.++..++.+..+++|+.|++++|++ +|.||.+++.......++..
T Consensus       204 l~~~~~~~~~~~~~------~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l-~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         204 LSRNMLEGDASVLF------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CCSSEEEECCGGGC------CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC-EECCCGGGGGCTTCCEEECC
T ss_pred             cccccccccccccc------cccccccccccccccccccccccccccccccccCccCee-cccCChHHhCCCCCCEEECc
Confidence                   0122222      367889999999999996667899999999999999999 78999999999888888888


Q ss_pred             cccCC
Q 023443          247 KENDE  251 (282)
Q Consensus       247 ~~~~~  251 (282)
                      .++..
T Consensus       277 ~N~l~  281 (313)
T d1ogqa_         277 FNNLC  281 (313)
T ss_dssp             SSEEE
T ss_pred             CCccc
Confidence            88754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3.9e-21  Score=156.08  Aligned_cols=164  Identities=23%  Similarity=0.345  Sum_probs=137.8

Q ss_pred             CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      ....+.++++|++++|.|+.+++ +..+++|++|++++|+|+.++.++++++|++|++++|.+..+++  +.+++.|++|
T Consensus        35 ~~~~l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L  111 (199)
T d2omxa2          35 SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGL  111 (199)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             CHHHhcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccCcccccCCcccccccccccccccccc--cccccccccc
Confidence            34457889999999999998864 67799999999999999999889999999999999999998864  4689999999


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMK  173 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~  173 (282)
                      ++++|.+..++   .+..+++|+.|++++|++..++.     +..+++|+.|++++|+..                    
T Consensus       112 ~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-----l~~~~~L~~L~l~~n~l~--------------------  163 (199)
T d2omxa2         112 TLFNNQITDID---PLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFSSNQVT--------------------  163 (199)
T ss_dssp             ECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCC--------------------
T ss_pred             ccccccccccc---ccchhhhhHHhhhhhhhhccccc-----cccccccccccccccccc--------------------
Confidence            99999998865   47789999999999999988864     688999999999987531                    


Q ss_pred             cccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHH
Q 023443          174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEE  217 (282)
Q Consensus       174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~  217 (282)
                       .++ .+.      .+++|+.|++++|+++.++ .++++++|++
T Consensus       164 -~l~-~l~------~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~  198 (199)
T d2omxa2         164 -DLK-PLA------NLTTLERLDISSNKVSDIS-VLAKLTNLES  198 (199)
T ss_dssp             -CCG-GGT------TCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred             -CCc-ccc------CCCCCCEEECCCCCCCCCc-cccCCCCCCc
Confidence             111 123      6789999999999999886 5788888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1e-20  Score=163.06  Aligned_cols=201  Identities=15%  Similarity=0.215  Sum_probs=150.9

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      +++++|+|++|+|+.+| ..|.++++|++|++++|.+..++  .|.+++.|++|++++|+++.+|...+   ..+..|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~---~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchh---hhhhhhhc
Confidence            67999999999999998 47889999999999999999984  68999999999999999999987543   46777777


Q ss_pred             cCCcCCCCCCC-------------------------CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCccc
Q 023443           96 TNNRLVNLVEI-------------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKE  150 (282)
Q Consensus        96 ~~N~l~~~~~~-------------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~  150 (282)
                      .+|.+..++..                         ..+..+++|+.+++++|.+..+|..      .+++|+.|+++++
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~------~~~~L~~L~l~~n  181 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------LPPSLTELHLDGN  181 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS------CCTTCSEEECTTS
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc------cCCccCEEECCCC
Confidence            77777654320                         2355678899999999999998873      3678999999885


Q ss_pred             HHHH--HHhccChhHHHHHhhh-cccccc-CCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhh
Q 023443          151 RMEA--ASLFASEEMEEEAKKE-SMKTLM-PVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  226 (282)
Q Consensus       151 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~-p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~  226 (282)
                      ....  ...|........+... +....+ +..+      ..+++|++|+|++|+|+.||.++.++++|++|++++|+| 
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~------~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i-  254 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL------ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI-  254 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG------GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC-
T ss_pred             cCCCCChhHhhccccccccccccccccccccccc------cccccceeeecccccccccccccccccCCCEEECCCCcc-
Confidence            4321  1222222111111000 112222 3333      378899999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCC
Q 023443          227 SGQLPADLKI  236 (282)
Q Consensus       227 ~g~iP~~l~~  236 (282)
                       ..|+...+.
T Consensus       255 -~~i~~~~f~  263 (305)
T d1xkua_         255 -SAIGSNDFC  263 (305)
T ss_dssp             -CCCCTTSSS
T ss_pred             -CccChhhcc
Confidence             788765543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.3e-19  Score=135.91  Aligned_cols=121  Identities=28%  Similarity=0.388  Sum_probs=106.2

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcC
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL  100 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  100 (282)
                      |+|+|++|+|+.++. +..+++|++|++++|.|+.+| .|+.+++|++|++++|.|+.++.  +..+++|++|++++|+|
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc--cccccccCeEECCCCcc
Confidence            689999999998885 678999999999999999997 78999999999999999999863  46899999999999999


Q ss_pred             CCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEe
Q 023443          101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL  145 (282)
Q Consensus       101 ~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L  145 (282)
                      +.++.+..+..+++|+.|++++|+++.++.........+++|+.+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            998865578899999999999999997776554466778888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.6e-20  Score=153.79  Aligned_cols=164  Identities=18%  Similarity=0.279  Sum_probs=134.9

Q ss_pred             CCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443           17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~   96 (282)
                      .+.+|+.|++++|.|+.+++ +..+++|++|++++|+|+.++.++.+++|++|++++|+++.++.  +.++++|+.|+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~  120 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE  120 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred             HhcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccc
Confidence            35678999999999998875 56789999999999999998878889999999999999998863  4588999999999


Q ss_pred             CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM  176 (282)
Q Consensus        97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (282)
                      +|.+..++   .+.+++.++.+++++|.++..+.     +..+++|++++++++..                     ..+
T Consensus       121 ~~~~~~~~---~l~~l~~l~~l~~~~n~l~~~~~-----~~~l~~L~~l~l~~n~l---------------------~~i  171 (210)
T d1h6ta2         121 HNGISDIN---GLVHLPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQI---------------------SDI  171 (210)
T ss_dssp             TSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCC---------------------CCC
T ss_pred             cccccccc---ccccccccccccccccccccccc-----ccccccccccccccccc---------------------ccc
Confidence            99988765   47788899999999999987664     57889999999998653                     111


Q ss_pred             CCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHH
Q 023443          177 PVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVAR  220 (282)
Q Consensus       177 p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l  220 (282)
                      ++ +.      .+++|+.|+|++|+++.|| .++++++|++|++
T Consensus       172 ~~-l~------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         172 VP-LA------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             GG-GT------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEE
T ss_pred             cc-cc------CCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEc
Confidence            11 23      6789999999999999886 5888998887765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=1e-19  Score=156.77  Aligned_cols=219  Identities=21%  Similarity=0.225  Sum_probs=165.0

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~   97 (282)
                      ..+.++-++++++++|..+  .+++++|+|++|+|+.+|  .|.++++|++|++++|.+..+++..|.+++.|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            5678899999999999766  368999999999999997  689999999999999999999999889999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchH-----------------------HHHhhCCCCcEecCcccHHHH
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL-----------------------YVIHKLKSLRVLDFKKERMEA  154 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-----------------------~~l~~l~~L~~L~ls~~~~~~  154 (282)
                      |+++.+|.  .+  ...+..|++.+|.+..++...+                       ..+..+++|++++++++....
T Consensus        89 n~l~~l~~--~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          89 NQLKELPE--KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SCCSBCCS--SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CccCcCcc--ch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            99999886  32  3467778888887765543322                       135677889999998854321


Q ss_pred             --HHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCC
Q 023443          155 --ASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLP  231 (282)
Q Consensus       155 --~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP  231 (282)
                        ...+....... +.........+..+.      .++.++.|++++|+++.+ +.++..+++|++|++++|.|  ..||
T Consensus       165 l~~~~~~~L~~L~-l~~n~~~~~~~~~~~------~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L--~~lp  235 (305)
T d1xkua_         165 IPQGLPPSLTELH-LDGNKITKVDAASLK------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVP  235 (305)
T ss_dssp             CCSSCCTTCSEEE-CTTSCCCEECTGGGT------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC--SSCC
T ss_pred             cCcccCCccCEEE-CCCCcCCCCChhHhh------ccccccccccccccccccccccccccccceeeecccccc--cccc
Confidence              01111100000 000011112333333      778999999999999976 46789999999999999999  7899


Q ss_pred             CCCCCCCCCCCCCcccccCCCC
Q 023443          232 ADLKIPDYDSGSKDVKENDEKM  253 (282)
Q Consensus       232 ~~l~~~~~~~~~~~~~~~~~~~  253 (282)
                      +++........++...++....
T Consensus       236 ~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCC
T ss_pred             cccccccCCCEEECCCCccCcc
Confidence            9999887888888777775544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.1e-18  Score=142.50  Aligned_cols=138  Identities=28%  Similarity=0.337  Sum_probs=121.3

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      .++.+.+.....+..+++|++|++++|.|+.+++ +..+++|++|++++|+|+.++.+..+++|+.|++++|.+..++. 
T Consensus        52 ~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~-  129 (210)
T d1h6ta2          52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-  129 (210)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-
T ss_pred             ECcCCCCCCchhHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccccccccccccccccccccccccc-
Confidence            4556666777778899999999999999998885 56799999999999999999989999999999999999988753 


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                       +.+++.++.+++++|.++..+   .+..+++|+.+++++|+++.+++     ++++++|+.|++++|+
T Consensus       130 -l~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~i~~-----l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         130 -LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred             -ccccccccccccccccccccc---ccccccccccccccccccccccc-----ccCCCCCCEEECCCCC
Confidence             458899999999999998765   46778999999999999998875     6889999999999976

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1e-19  Score=160.62  Aligned_cols=174  Identities=20%  Similarity=0.251  Sum_probs=129.6

Q ss_pred             CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (282)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~   91 (282)
                      ...+..+++++.+++++|.++.+++ +..+++|+.|++++|.++.++.+..+++|+.|++++|.++++++  +..+++|+
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~  266 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT  266 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             ccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--ccccccCC
Confidence            3446677888888888888887764 34467888888888888888877888888888888888888764  45788888


Q ss_pred             EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES  171 (282)
Q Consensus        92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~  171 (282)
                      +|++++|.++++++   +..++.++.+.++.|.++.++.     +..+++++.|+++++++..                 
T Consensus       267 ~L~l~~~~l~~~~~---~~~~~~l~~l~~~~n~l~~~~~-----~~~~~~l~~L~ls~n~l~~-----------------  321 (384)
T d2omza2         267 ELKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISD-----------------  321 (384)
T ss_dssp             EEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSC-----------------
T ss_pred             EeeccCcccCCCCc---cccccccccccccccccccccc-----cchhcccCeEECCCCCCCC-----------------
Confidence            88888888887764   5667778888888888877654     5777888888888765310                 


Q ss_pred             cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443          172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  225 (282)
Q Consensus       172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l  225 (282)
                          ++ .+      ..+++|++|++++|+|+.++ .++++++|++|++++|++
T Consensus       322 ----l~-~l------~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         322 ----IS-PV------SSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             ----CG-GG------GGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             ----Cc-cc------ccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcC
Confidence                11 01      25667777777777777665 577777777777777777

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=5.6e-18  Score=137.13  Aligned_cols=139  Identities=22%  Similarity=0.295  Sum_probs=122.6

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      .++.+.|.+...+..+++|++|++++|+|+.+++ +..+++|++|++++|.+..++.+.+++.|+.|++++|.+..+++ 
T Consensus        46 ~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-  123 (199)
T d2omxa2          46 QADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-  123 (199)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-
T ss_pred             ECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccccccccccccccc-
Confidence            3455566666678889999999999999998876 78899999999999999999889999999999999999988753 


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                       +..+++|++|++++|.+..++   .+..+++|+.|++.+|+++.++.     ++++++|++|++++|++
T Consensus       124 -~~~l~~L~~L~l~~n~l~~~~---~l~~~~~L~~L~l~~n~l~~l~~-----l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         124 -LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLNFSSNQVTDLKP-----LANLTTLERLDISSNKV  184 (199)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCC
T ss_pred             -cchhhhhHHhhhhhhhhcccc---cccccccccccccccccccCCcc-----ccCCCCCCEEECCCCCC
Confidence             458999999999999998775   57889999999999999999875     78999999999999764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=3.7e-19  Score=147.01  Aligned_cols=178  Identities=20%  Similarity=0.257  Sum_probs=141.9

Q ss_pred             CCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccE
Q 023443           13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (282)
Q Consensus        13 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~   92 (282)
                      ..+..+.+|+.|++.+|.|+.++ .+..+++|++|++++|.|+.++.+..+++++++++++|.++.++ . +.++++|++
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~-l~~l~~L~~  111 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-A-IAGLQSIKT  111 (227)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-G-GTTCTTCCE
T ss_pred             CCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccccc-c-ccccccccc
Confidence            34456778999999999999885 47789999999999999999877899999999999999998875 3 458999999


Q ss_pred             EeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcc
Q 023443           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESM  172 (282)
Q Consensus        93 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~  172 (282)
                      +.++++....+.   .+...+.+..+.++.+.+.....     +..+++|+.|+++++....                  
T Consensus       112 l~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~n~~~~------------------  165 (227)
T d1h6ua2         112 LDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSD------------------  165 (227)
T ss_dssp             EECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCC------------------
T ss_pred             cccccccccccc---hhccccchhhhhchhhhhchhhh-----hcccccccccccccccccc------------------
Confidence            999999888765   35667888899998888876654     5778889999988764210                  


Q ss_pred             ccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCC
Q 023443          173 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA  232 (282)
Q Consensus       173 ~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~  232 (282)
                         . ..+.      .+++|+.|+|++|+++.+++ ++++++|++|++++|++  ..||+
T Consensus       166 ---~-~~l~------~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~l--t~i~~  212 (227)
T d1h6ua2         166 ---L-TPLA------NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI--SDVSP  212 (227)
T ss_dssp             ---C-GGGT------TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC--CBCGG
T ss_pred             ---c-hhhc------ccccceecccCCCccCCChh-hcCCCCCCEEECcCCcC--CCCcc
Confidence               0 1122      56788888888888887754 78888888888888888  55653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=9.9e-20  Score=150.49  Aligned_cols=178  Identities=20%  Similarity=0.246  Sum_probs=148.0

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      .+..+.|.....+..+++|++|++++|.|+.+++ +..+++|+++++++|.++.++.+..+++|+++.++++.+..+++ 
T Consensus        47 ~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~-  124 (227)
T d1h6ua2          47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-  124 (227)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-
T ss_pred             ECCCCCCCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccccccccch-
Confidence            3455566666778899999999999999998765 67899999999999999999989999999999999999887754 


Q ss_pred             cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE  162 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~  162 (282)
                       +...+.+..+.++++.+....   .+..+++|+.|++++|.+..++.     ++++++|+.|++++|++.         
T Consensus       125 -~~~~~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~-----l~~l~~L~~L~Ls~n~l~---------  186 (227)
T d1h6ua2         125 -LAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKIS---------  186 (227)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCC---------
T ss_pred             -hccccchhhhhchhhhhchhh---hhccccccccccccccccccchh-----hcccccceecccCCCccC---------
Confidence             346789999999999988765   46678899999999999987765     688999999999997631         


Q ss_pred             HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHH
Q 023443          163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVAR  220 (282)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l  220 (282)
                                  .++. +      ..+++|++|+|++|+++.+++ +.++++|++|++
T Consensus       187 ------------~l~~-l------~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         187 ------------DISP-L------ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL  224 (227)
T ss_dssp             ------------CCGG-G------GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEE
T ss_pred             ------------CChh-h------cCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEe
Confidence                        1111 2      267899999999999998874 889998887765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=8.7e-18  Score=135.22  Aligned_cols=124  Identities=20%  Similarity=0.258  Sum_probs=107.8

Q ss_pred             cCHHHHhcCCC-CCCCCceeEEEecCCcccc-cc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443            4 LTADLIWKSPH-FFNAIKERELDLRGNKIAV-IE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (282)
Q Consensus         4 l~~~~i~~~~~-~~~l~~L~~L~Ls~N~l~~-ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~   78 (282)
                      ++.+.+...|+ +  .+++++|+|++|+|+. ++ ..|..+++|+.|+|++|.+..++  .|..+++|++|+|++|+|+.
T Consensus        15 Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          15 CTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             CTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             EeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc
Confidence            34444444433 2  2689999999999984 55 67789999999999999999885  78899999999999999999


Q ss_pred             cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (282)
Q Consensus        79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~  130 (282)
                      +++.+|.++++|++|+|++|+|+.+++ +.|..+++|++|+|++|++.....
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCHHHHhCCCcccccccCCccccccCH-HHhcCCcccccccccccccccccc
Confidence            999999999999999999999999998 689999999999999999986554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=9.3e-19  Score=154.40  Aligned_cols=180  Identities=23%  Similarity=0.332  Sum_probs=151.8

Q ss_pred             cCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCc
Q 023443            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI   83 (282)
Q Consensus         4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~   83 (282)
                      ++.+.+.....+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+++++.+..+++|++|++++|.++++++  
T Consensus       204 l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~--  280 (384)
T d2omza2         204 ATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--  280 (384)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--
T ss_pred             ccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCc--
Confidence            34444555555677889999999999999886 456799999999999999999888899999999999999999865  


Q ss_pred             ccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhH
Q 023443           84 GEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEM  163 (282)
Q Consensus        84 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~  163 (282)
                      +..++.++.+.++.|.+++++   .+..+++++.|++++|+++.++.     +..+++|+.|++++|++           
T Consensus       281 ~~~~~~l~~l~~~~n~l~~~~---~~~~~~~l~~L~ls~n~l~~l~~-----l~~l~~L~~L~L~~n~l-----------  341 (384)
T d2omza2         281 LAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFANNKV-----------  341 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCC-----------
T ss_pred             ccccccccccccccccccccc---ccchhcccCeEECCCCCCCCCcc-----cccCCCCCEEECCCCCC-----------
Confidence            358899999999999999865   47788999999999999999875     68899999999999763           


Q ss_pred             HHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHH
Q 023443          164 EEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK  223 (282)
Q Consensus       164 ~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N  223 (282)
                                +.++ .+.      .+++|++|++++|+|+.+++ +.++++|++|++++|
T Consensus       342 ----------~~l~-~l~------~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 ----------SDVS-SLA------NLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ----------CCCG-GGG------GCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             ----------CCCh-hHc------CCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence                      1122 233      68899999999999998875 899999999888776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.8e-18  Score=141.18  Aligned_cols=184  Identities=17%  Similarity=0.187  Sum_probs=116.1

Q ss_pred             CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccc-cC--CCCCCCccCeEecc-CCcCcccCCCcccCCccccEE
Q 023443           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGTLIIN-NNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      +++++|++++|+|+.+| ..|.++++|++|++++|.+.. ++  .|.+++.++++.+. .|.+..+++..|.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            46777777777777776 456677777777777777654 33  46667777777664 356777777766677777777


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCC-CCcEecCcccHHHHHHhccChhHHHHHhhhcc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLK-SLRVLDFKKERMEAASLFASEEMEEEAKKESM  172 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~-~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~  172 (282)
                      ++++|.++..+....+..+..+..+...++.+..++..   .+..++ .++.|+++++++                    
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~---~~~~~~~~l~~L~l~~n~l--------------------  165 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGI--------------------  165 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCC--------------------
T ss_pred             ccchhhhccccccccccccccccccccccccccccccc---ccccccccceeeecccccc--------------------
Confidence            77777777665433344455555566666667766654   233333 566677666442                    


Q ss_pred             ccccCCCCCCCcchhhcCCCe-eeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCCCCC
Q 023443          173 KTLMPVEVPNVSEEEEQQTPK-VVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLPADL  234 (282)
Q Consensus       173 ~~~~p~~~~~~~~~~~l~~L~-~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP~~l  234 (282)
                       ..++....      ...++. .+.+++|+++.||.. +.++++|++|++++|++  ..||.+.
T Consensus       166 -~~i~~~~~------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l--~~l~~~~  220 (242)
T d1xwdc1         166 -QEIHNCAF------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYG  220 (242)
T ss_dssp             -CEECTTTT------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC--CCCCSSS
T ss_pred             -cccccccc------cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcC--CccCHHH
Confidence             22333333      233433 345677777777653 57778888888888877  5676653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.1e-17  Score=125.13  Aligned_cols=118  Identities=22%  Similarity=0.265  Sum_probs=102.1

Q ss_pred             CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (282)
Q Consensus         1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~   80 (282)
                      ++.|+.+.|...+.+..+++|++|++++|.|+.+|..++.+++|++|++++|.|+.+|++..+++|++|++++|+|+.++
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCC
Confidence            35788888999999999999999999999999999889999999999999999999999999999999999999999987


Q ss_pred             C-CcccCCccccEEeccCCcCCCCCCC--CCCCCCCCccEE
Q 023443           81 P-NIGEFLPKLHTLVLTNNRLVNLVEI--DPLTSLPKLQFL  118 (282)
Q Consensus        81 ~-~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L  118 (282)
                      . ..+..+++|++|++++|.++..+..  ..+..+++|+.+
T Consensus        82 ~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          82 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            5 4567899999999999999876541  112345666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.62  E-value=1.2e-18  Score=141.20  Aligned_cols=132  Identities=30%  Similarity=0.346  Sum_probs=85.0

Q ss_pred             CCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCC-CCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM-PHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      +..+++|++|+|++|+|+.++ .+..+++|++|+|++|.|+.+|.+ ..+++|++|++++|+++.+++  +..+++|++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~--~~~l~~L~~L  120 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH--HHHHHHSSEE
T ss_pred             HhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            455667777777777777765 355677777777777777776643 334567777777777776632  3466777777


Q ss_pred             eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCc-------hHHHHhhCCCCcEecCcc
Q 023443           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY-------RLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~-------~~~~l~~l~~L~~L~ls~  149 (282)
                      ++++|+|+.++.+..+..+++|+.|++++|++...+..       +...+..+++|+.||-..
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~  183 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMP  183 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGG
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCcc
Confidence            77777777665433566777777777777776533221       122356677777777544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.9e-17  Score=127.92  Aligned_cols=117  Identities=25%  Similarity=0.325  Sum_probs=92.8

Q ss_pred             ccccccccccCCCCCcEEeccCCCccccCC-CCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCC
Q 023443           30 KIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP  108 (282)
Q Consensus        30 ~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  108 (282)
                      -|...|. +.++.++++|+|++|+|+.++. +..+++|++|+|++|.|+.++ + +..+++|++|++++|+++.+++ ..
T Consensus         7 ~i~~~~~-~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~-~~~l~~L~~L~ls~N~i~~l~~-~~   82 (162)
T d1a9na_           7 LIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNNRICRIGE-GL   82 (162)
T ss_dssp             HHHTSCE-EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSSCCCEECS-CH
T ss_pred             HHhhhHh-ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-C-cccCcchhhhhcccccccCCCc-cc
Confidence            3333443 4567789999999999999874 467889999999999999884 3 4688999999999999998886 34


Q ss_pred             CCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       109 ~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +..+++|+.|++++|+|+.++...  .+..+++|++|++++|.+
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~--~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLD--PLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGG
T ss_pred             cccccccccceecccccccccccc--ccccccccchhhcCCCcc
Confidence            567899999999999998876521  467889999999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=113.02  Aligned_cols=109  Identities=20%  Similarity=0.231  Sum_probs=91.8

Q ss_pred             CCCCceeEEEecCCccccccccccCCCCCcEEeccCC-CccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccE
Q 023443           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDN-EIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (282)
Q Consensus        16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~   92 (282)
                      ..+.....++.+++.+..+|..+..+++|+.|++++| .|+.++  .|.++++|+.|++++|+|+.+++.+|.++++|++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3445566788999999988888888899999999766 488885  6889999999999999999999998889999999


Q ss_pred             EeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC
Q 023443           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        93 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  126 (282)
                      |+|++|+|+.++. ..|..+ .|+.|+|++|++.
T Consensus        85 L~Ls~N~l~~l~~-~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSW-KTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCS-TTTCSC-CCCEEECCSSCCC
T ss_pred             eeccCCCCcccCh-hhhccc-cccccccCCCccc
Confidence            9999999999887 455444 6999999999886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.55  E-value=6.6e-17  Score=130.72  Aligned_cols=131  Identities=21%  Similarity=0.294  Sum_probs=111.3

Q ss_pred             CCceeEEEecCC--ccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443           18 AIKERELDLRGN--KIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (282)
Q Consensus        18 l~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L   95 (282)
                      ...++.++++++  .++.+|..+..+++|++|+|++|.|+.++.+..+++|++|++++|.|+.++. .+..+++|++|++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l  100 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWI  100 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEEC
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccc-ccccccccccccc
Confidence            445667777765  5778888889999999999999999999989999999999999999999864 4446678999999


Q ss_pred             cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH
Q 023443           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA  154 (282)
Q Consensus        96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~  154 (282)
                      ++|.|+.++   .+..+++|+.|++++|+|+.++..  ..+..+++|++|++++|.+..
T Consensus       101 ~~N~i~~l~---~~~~l~~L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIASLS---GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCCHH---HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccc---cccccccccccccccchhcccccc--ccccCCCccceeecCCCcccc
Confidence            999999875   477889999999999999987641  157899999999999987644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.4e-16  Score=127.34  Aligned_cols=200  Identities=17%  Similarity=0.200  Sum_probs=148.1

Q ss_pred             eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc-cCCCcccCCccccEEeccC-
Q 023443           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR-INPNIGEFLPKLHTLVLTN-   97 (282)
Q Consensus        22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~-   97 (282)
                      +.++.++..++.+|..+.  +++++|++++|.|+.+|  .|.++++|++|++++|.+.. +++..|.+++.++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            688999999999996553  58999999999999997  58999999999999999876 6777888999999999764 


Q ss_pred             CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC
Q 023443           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP  177 (282)
Q Consensus        98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (282)
                      |.+...++ ..|.++++|+++++++|.+..++...  .+..++.+..+...++..                     ..++
T Consensus        89 n~l~~~~~-~~~~~l~~L~~l~l~~~~l~~~~~~~--~~~~l~~l~~~~~~n~~l---------------------~~i~  144 (242)
T d1xwdc1          89 NNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDVH--KIHSLQKVLLDIQDNINI---------------------HTIE  144 (242)
T ss_dssp             TTCCEECT-TSEECCTTCCEEEEESCCCCSCCCCT--TTCBSSCEEEEEESCTTC---------------------CEEC
T ss_pred             cccccccc-ccccccccccccccchhhhccccccc--cccccccccccccccccc---------------------cccc
Confidence            67887776 57899999999999999998876631  123344444444333221                     1112


Q ss_pred             -CCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHH-HHHHHhhhCCCCCCCCCC-CCCCCCCCcccccCCCCC
Q 023443          178 -VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEV-ARLEKVLKSGQLPADLKI-PDYDSGSKDVKENDEKMV  254 (282)
Q Consensus       178 -~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L-~l~~N~l~~g~iP~~l~~-~~~~~~~~~~~~~~~~~~  254 (282)
                       ..+.     +....++.+++++|+++.++....+..+++++ .+.+|.+  ..||.+.+. ......++...++....+
T Consensus       145 ~~~~~-----~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l--~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         145 RNSFV-----GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             TTSST-----TSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC--CCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             ccccc-----cccccceeeecccccccccccccccchhhhcccccccccc--ccccHHHhcCCCCCCEEECCCCcCCccC
Confidence             2222     11247889999999999998887777776665 4677888  889887544 456666777666655443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.51  E-value=7.8e-15  Score=126.97  Aligned_cols=235  Identities=16%  Similarity=0.170  Sum_probs=141.6

Q ss_pred             ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (282)
Q Consensus         3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~   82 (282)
                      +|+.+.+...|+  .+++|++|++++|+|+.+|..+   .+|+.|++++|+++.++.+.  +.|++|++++|.++.+|. 
T Consensus        44 dLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~lp~-  115 (353)
T d1jl5a_          44 ELNNLGLSSLPE--LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE-  115 (353)
T ss_dssp             ECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC-
T ss_pred             EeCCCCCCCCCC--CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc--cccccccccccccccccc-
Confidence            344444444443  2467888899988888888653   57888888888888776543  468999999999998875 


Q ss_pred             cccCCccccEEeccCCcCCCCCCC-----------------CCCCCCCCccEEEeeCCcCCccCCchH------------
Q 023443           83 IGEFLPKLHTLVLTNNRLVNLVEI-----------------DPLTSLPKLQFLSLLDNSITKKPNYRL------------  133 (282)
Q Consensus        83 ~~~~l~~L~~L~L~~N~l~~~~~~-----------------~~~~~l~~L~~L~L~~N~l~~ip~~~~------------  133 (282)
                      . ..+++|++|++++|.++..+..                 ..+..++.++.+++.+|.+..++....            
T Consensus       116 ~-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~  194 (353)
T d1jl5a_         116 L-QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL  194 (353)
T ss_dssp             C-TTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred             h-hhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccc
Confidence            3 4789999999999887765431                 134556777788887776654322100            


Q ss_pred             ---HHHhhCCCCcEecCcccHHHHHHhc--------------cCh-hHHHHHhh-------hccccccCCCCC-------
Q 023443          134 ---YVIHKLKSLRVLDFKKERMEAASLF--------------ASE-EMEEEAKK-------ESMKTLMPVEVP-------  181 (282)
Q Consensus       134 ---~~l~~l~~L~~L~ls~~~~~~~~~~--------------~~~-~~~~~~~~-------~~~~~~~p~~~~-------  181 (282)
                         ..+..++.|+.++++++........              ... .....+..       ......++....       
T Consensus       195 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~  274 (353)
T d1jl5a_         195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN  274 (353)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccC
Confidence               0135567788888776322110000              000 00000000       000111111110       


Q ss_pred             CCcch-hhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 023443          182 NVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMV  254 (282)
Q Consensus       182 ~~~~~-~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~~  254 (282)
                      .+... ..+++|++|++++|+|+.||..   +++|+.|++++|+|  +.||..+.   ....++...++....+
T Consensus       275 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L--~~l~~~~~---~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         275 EIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL--AEVPELPQ---NLKQLHVEYNPLREFP  340 (353)
T ss_dssp             CCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC--SCCCCCCT---TCCEEECCSSCCSSCC
T ss_pred             ccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcC--CccccccC---CCCEEECcCCcCCCCC
Confidence            00011 2356899999999999998854   56777888999999  68886543   3345666666655443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1e-13  Score=107.33  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=95.5

Q ss_pred             cCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCC-cCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCcc
Q 023443           39 ATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ  116 (282)
Q Consensus        39 ~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~  116 (282)
                      +.+...+.++.+++.+..+| .+..+++|++|++++| .|+.+++..|.++++|+.|++++|+|+.+++ ..|.++++|+
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-cccccccccc
Confidence            34566778999999999887 7889999999999766 5999999999999999999999999999987 6899999999


Q ss_pred             EEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443          117 FLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       117 ~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      +|+|++|+|+.+|..   .+ ...+|+.|++++|..
T Consensus        84 ~L~Ls~N~l~~l~~~---~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          84 RLNLSFNALESLSWK---TV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             EEECCSSCCSCCCST---TT-CSCCCCEEECCSSCC
T ss_pred             ceeccCCCCcccChh---hh-ccccccccccCCCcc
Confidence            999999999999985   23 345799999999754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.30  E-value=1.6e-13  Score=118.59  Aligned_cols=100  Identities=25%  Similarity=0.426  Sum_probs=85.4

Q ss_pred             CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (282)
                      .++++|+|++|+|+.+|+.   +++|++|++++|+|+.+|..  +.+|+.|++++|+++.++. +   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~-l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh-h---cccccccccccc
Confidence            3588999999999999975   56899999999999999853  4689999999999998853 2   246999999999


Q ss_pred             cCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (282)
Q Consensus        99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~  130 (282)
                      .++.+|.   ++.+++|+.|++++|.+...+.
T Consensus       109 ~l~~lp~---~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         109 QLEKLPE---LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CCSSCCC---CTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccc---hhhhccceeecccccccccccc
Confidence            9999875   5789999999999998886655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.8e-13  Score=113.52  Aligned_cols=131  Identities=11%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             CCCCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCcccc--CCCCCCCccCeEeccCC-cCcccC-CCcccCCc
Q 023443           15 FFNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNN-RITRIN-PNIGEFLP   88 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~   88 (282)
                      .....+|++|+++++.+.  .++..+..+++|++|+++++.++..  ..++.+++|++|+++++ .++... ..+..+++
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            345678999999999887  3567778899999999999988753  36778899999999985 565421 23345789


Q ss_pred             cccEEeccCC-cCCC--CCCCCCCC-CCCCccEEEeeCCc--CC--ccCCchHHHHhhCCCCcEecCcccH
Q 023443           89 KLHTLVLTNN-RLVN--LVEIDPLT-SLPKLQFLSLLDNS--IT--KKPNYRLYVIHKLKSLRVLDFKKER  151 (282)
Q Consensus        89 ~L~~L~L~~N-~l~~--~~~~~~~~-~l~~L~~L~L~~N~--l~--~ip~~~~~~l~~l~~L~~L~ls~~~  151 (282)
                      +|++|+++++ .++.  +..  .+. .++.|+.|+++++.  ++  .+..    .+.++++|++|+++++.
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~i~~~~l~~----l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQV--AVAHVSETITQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHH--HHHHSCTTCCEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCT
T ss_pred             hccccccccccccccccchh--hhcccccccchhhhcccccccccccccc----ccccccccccccccccc
Confidence            9999999986 3442  111  122 34678888888642  33  1222    34678889999988743

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=8.4e-13  Score=114.73  Aligned_cols=36  Identities=11%  Similarity=-0.021  Sum_probs=26.5

Q ss_pred             CCCeeeCCChhHHH-----HHHHHhh-cccChHHHHHHHHhh
Q 023443          190 QTPKVVAPTPEQII-----AIKAAIV-NSQTLEEVARLEKVL  225 (282)
Q Consensus       190 ~~L~~L~Ls~N~l~-----~ip~~l~-~~~~L~~L~l~~N~l  225 (282)
                      ..|+.|++++|+|+     .+...+. ++++|+.|++++|.+
T Consensus       273 ~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            46888888888774     3555563 677888888888887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.7e-11  Score=103.70  Aligned_cols=188  Identities=16%  Similarity=0.143  Sum_probs=123.5

Q ss_pred             CCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCC-Ccccc--CC-CCCCCccCeEeccCC-cCcc--cCCCcccC
Q 023443           15 FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDN-EIVKL--EN-MPHLNRLGTLIINNN-RITR--INPNIGEF   86 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N-~l~~i--~~-~~~l~~L~~L~L~~N-~l~~--~~~~~~~~   86 (282)
                      +..+++|++|+++++.+. ..+..+..+++|++|+++++ .++..  .. +.++++|++|+++++ .++.  +...+...
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            567899999999999987 45566778999999999995 57642  22 356899999999986 4543  22223334


Q ss_pred             CccccEEeccCC--cCCC--CCCCCCCCCCCCccEEEeeCCc-CCccCCchHHHHhhCCCCcEecCcccHHHHHHhccCh
Q 023443           87 LPKLHTLVLTNN--RLVN--LVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASE  161 (282)
Q Consensus        87 l~~L~~L~L~~N--~l~~--~~~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~  161 (282)
                      +++|+.|+++++  .++.  +..  .+.++++|++|++++|. ++.-..   ..+.++++|++|+++++.......    
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~--l~~~~~~L~~L~L~~~~~itd~~~---~~l~~~~~L~~L~L~~C~~i~~~~----  217 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLST--LVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNYLQHLSLSRCYDIIPET----  217 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHH--HHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTTCCEEECTTCTTCCGGG----
T ss_pred             ccccchhhhcccccccccccccc--cccccccccccccccccCCCchhh---hhhcccCcCCEEECCCCCCCChHH----
Confidence            578999999875  3442  221  23468999999999875 552211   157889999999999843110000    


Q ss_pred             hHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH--HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCC
Q 023443          162 EMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIP  237 (282)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~  237 (282)
                                     ...+      ..+++|+.|+++++ ++  .++.....+++|+.   ..+.+ ++..|+.++..
T Consensus       218 ---------------l~~L------~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i---~~~~l-s~~~~~~~~~~  269 (284)
T d2astb2         218 ---------------LLEL------GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI---NCSHF-TTIARPTIGNK  269 (284)
T ss_dssp             ---------------GGGG------GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEE---SCCCS-CCTTCSSCSST
T ss_pred             ---------------HHHH------hcCCCCCEEeeeCC-CCHHHHHHHHHhCccccc---cCccC-CCCCCCccCcc
Confidence                           0111      25678999999876 33  34444456666653   34455 44445555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.89  E-value=2.5e-11  Score=105.14  Aligned_cols=138  Identities=15%  Similarity=0.176  Sum_probs=79.9

Q ss_pred             CCCCCceeEEEecCCccc-----cccccccCCCCCcEEeccCCCccccC------------CCCCCCccCeEeccCCcCc
Q 023443           15 FFNAIKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVKLE------------NMPHLNRLGTLIINNNRIT   77 (282)
Q Consensus        15 ~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i~------------~~~~l~~L~~L~L~~N~l~   77 (282)
                      +.....|+.|+|++|.|.     .+...+...++|+.|+++++.+....            .+..+++|+.|+|++|.++
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            445677888888888775     24445566778888888776654221            2455677888888888776


Q ss_pred             ccCC----CcccCCccccEEeccCCcCCCCCC------C------CCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCC
Q 023443           78 RINP----NIGEFLPKLHTLVLTNNRLVNLVE------I------DPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLK  140 (282)
Q Consensus        78 ~~~~----~~~~~l~~L~~L~L~~N~l~~~~~------~------~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~  140 (282)
                      ....    ..+..+++|++|++++|.++....      +      ......+.|+.+.+++|.++.-....+ ..+...+
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence            5311    122356778888888776542100      0      001234566777777776652211111 1345566


Q ss_pred             CCcEecCcccHH
Q 023443          141 SLRVLDFKKERM  152 (282)
Q Consensus       141 ~L~~L~ls~~~~  152 (282)
                      .|+.|+++++++
T Consensus       187 ~L~~L~L~~n~i  198 (344)
T d2ca6a1         187 LLHTVKMVQNGI  198 (344)
T ss_dssp             TCCEEECCSSCC
T ss_pred             hhcccccccccc
Confidence            777777766543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.9e-11  Score=93.79  Aligned_cols=126  Identities=23%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCC--CcccCCccccEEecc
Q 023443           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLT   96 (282)
Q Consensus        20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~   96 (282)
                      ..+.|+++++..  .+ .+..+..+..+...++.+..++ .+..++.|++|+|++|+|+.+++  ..+..+++|++|+++
T Consensus        23 ~~~~Ldls~l~~--~~-~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          23 SQQALDLKGLRS--DP-DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS   99 (162)
T ss_dssp             SSCCBCCCCCSS--CT-TTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT
T ss_pred             hhCeeecccCCC--Cc-hhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc
Confidence            345566655432  22 1223344444444444444444 33567899999999999998753  445678999999999


Q ss_pred             CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC----chHHHHhhCCCCcEecCcc
Q 023443           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN----YRLYVIHKLKSLRVLDFKK  149 (282)
Q Consensus        97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~----~~~~~l~~l~~L~~L~ls~  149 (282)
                      +|.|+.++.+ .+.....|+.|++++|+++....    ++...+..+|+|+.||-..
T Consensus       100 ~N~i~~l~~l-~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         100 GNELKSEREL-DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             TSCCCCGGGH-HHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEE
T ss_pred             cCccccchhh-hhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCC
Confidence            9999998874 33344579999999999985433    3334678899999998543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2e-10  Score=88.90  Aligned_cols=102  Identities=20%  Similarity=0.183  Sum_probs=74.7

Q ss_pred             CCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC----CCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN----MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (282)
Q Consensus        18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L   93 (282)
                      +..+..++...+.+..++..+..+++|++|+|++|+|+.++.    +..+++|+.|+|++|.|+.+++-.+.....|+.|
T Consensus        41 ~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L  120 (162)
T d1koha1          41 QNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL  120 (162)
T ss_dssp             TTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSC
T ss_pred             ccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhcccccee
Confidence            333444444444444555555678999999999999998753    4578999999999999999877444456689999


Q ss_pred             eccCCcCCCCCCC------CCCCCCCCccEEE
Q 023443           94 VLTNNRLVNLVEI------DPLTSLPKLQFLS  119 (282)
Q Consensus        94 ~L~~N~l~~~~~~------~~~~~l~~L~~L~  119 (282)
                      ++++|.++.....      ..+..+++|+.||
T Consensus       121 ~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         121 WLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            9999999875430      1256789999886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.6e-09  Score=94.49  Aligned_cols=108  Identities=21%  Similarity=0.230  Sum_probs=77.5

Q ss_pred             CceeEEEecCCcccc--ccccccCCCCCcEEeccCCCcccc-----C-CCCCCCccCeEeccCCcCccc-----CCCccc
Q 023443           19 IKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRI-----NPNIGE   85 (282)
Q Consensus        19 ~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~L~~N~l~~~-----~~~~~~   85 (282)
                      ++|++||+++|+|+.  +...+..++++++|+|++|.|+..     . .+..+++|++|+|++|.|+..     ......
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            368899999999884  345566788889999999988742     2 456788899999999988642     122222


Q ss_pred             CCccccEEeccCCcCCCCCC---CCCCCCCCCccEEEeeCCcCC
Q 023443           86 FLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT  126 (282)
Q Consensus        86 ~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~  126 (282)
                      ...+|++|++++|.++...-   ...+..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            34578999999998875321   025677888999999988765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.4e-09  Score=94.69  Aligned_cols=136  Identities=20%  Similarity=0.179  Sum_probs=88.7

Q ss_pred             CCCceeEEEecCCccccc-----cccccCCCCCcEEeccCCCcccc--C----C-CCCCCccCeEeccCCcCcccCC---
Q 023443           17 NAIKERELDLRGNKIAVI-----ENLGATEDQFDTIDLSDNEIVKL--E----N-MPHLNRLGTLIINNNRITRINP---   81 (282)
Q Consensus        17 ~l~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~l~~i--~----~-~~~l~~L~~L~L~~N~l~~~~~---   81 (282)
                      ....++.+++++|.+...     ...+...+.++.+++++|.++..  .    . ......|+.+++++|.++....   
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            456788888888887632     22344577888888888888632  1    1 2234678888888888775422   


Q ss_pred             -CcccCCccccEEeccCCcCCC-----CCCCCCCC-CCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccHHH
Q 023443           82 -NIGEFLPKLHTLVLTNNRLVN-----LVEIDPLT-SLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKERME  153 (282)
Q Consensus        82 -~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~~~  153 (282)
                       ..+..+++|++|+|++|.|+.     +..  .+. ..+.|++|+|++|.|+......+ ..+..+++|++|++++|.+.
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~--~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQ--GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHH--HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccccccccchhhhheeeecccCcccchhhh--hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence             122355688999999998864     222  222 45678899999998874211111 14677888999999987654


Q ss_pred             H
Q 023443          154 A  154 (282)
Q Consensus       154 ~  154 (282)
                      .
T Consensus       411 ~  411 (460)
T d1z7xw1         411 D  411 (460)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=9e-06  Score=62.19  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             CCCCcEEeccCC-Cccc--c----CCCCCCCccCeEeccCCcCcccCC----CcccCCccccEEeccCCcCCCCCC---C
Q 023443           41 EDQFDTIDLSDN-EIVK--L----ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNLVE---I  106 (282)
Q Consensus        41 l~~L~~L~Ls~N-~l~~--i----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~---~  106 (282)
                      .++|+.|+|+++ .++.  +    ..+...+.|++|+|++|.+..-..    ..+...+.|+.|++++|.|+.-..   .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            345555555542 3432  1    134445556666666666553111    112244567777777776654110   0


Q ss_pred             CCCCCCCCccEEEeeCCcCCccCCchH----HHHhhCCCCcEecCcccHH
Q 023443          107 DPLTSLPKLQFLSLLDNSITKKPNYRL----YVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       107 ~~~~~l~~L~~L~L~~N~l~~ip~~~~----~~l~~l~~L~~L~ls~~~~  152 (282)
                      ..+...+.|++|++++|.+..+.....    ..+...++|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            145566778888888887765543211    2456678999999887543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=3e-06  Score=64.98  Aligned_cols=108  Identities=11%  Similarity=0.104  Sum_probs=78.0

Q ss_pred             CCCceeEEEecCC-ccc--c---ccccccCCCCCcEEeccCCCcccc--C----CCCCCCccCeEeccCCcCcccCC---
Q 023443           17 NAIKERELDLRGN-KIA--V---IENLGATEDQFDTIDLSDNEIVKL--E----NMPHLNRLGTLIINNNRITRINP---   81 (282)
Q Consensus        17 ~l~~L~~L~Ls~N-~l~--~---ip~~~~~l~~L~~L~Ls~N~l~~i--~----~~~~l~~L~~L~L~~N~l~~~~~---   81 (282)
                      +.++|++|+|+++ .++  .   +-..+...++|+.|+|++|.+..-  .    .+...+.|++|+|++|.|+.-..   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999974 576  2   334556778999999999999842  2    34567899999999999986221   


Q ss_pred             -CcccCCccccEEeccCCcCCCCCC------CCCCCCCCCccEEEeeCCc
Q 023443           82 -NIGEFLPKLHTLVLTNNRLVNLVE------IDPLTSLPKLQFLSLLDNS  124 (282)
Q Consensus        82 -~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~L~~N~  124 (282)
                       ......++|++|++++|.+..+..      ...+...+.|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             223466889999999998776432      0134456789999887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.07  E-value=3.4e-05  Score=58.63  Aligned_cols=113  Identities=12%  Similarity=0.128  Sum_probs=59.9

Q ss_pred             CCCCCcEEeccC-CCcccc------CCCCCCCccCeEeccCCcCcccC----CCcccCCccccEEeccCCcCCCCCC---
Q 023443           40 TEDQFDTIDLSD-NEIVKL------ENMPHLNRLGTLIINNNRITRIN----PNIGEFLPKLHTLVLTNNRLVNLVE---  105 (282)
Q Consensus        40 ~l~~L~~L~Ls~-N~l~~i------~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~---  105 (282)
                      +.++|+.|+|++ +.|+.-      ..+...++|++|++++|.++.-.    ...+...+.++.+++++|.++.-.-   
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345566666655 334421      13445566666666666654411    1122345567777777766643110   


Q ss_pred             CCCCCCCCCccEEEe--eCCcCCccCC-chHHHHhhCCCCcEecCcccHH
Q 023443          106 IDPLTSLPKLQFLSL--LDNSITKKPN-YRLYVIHKLKSLRVLDFKKERM  152 (282)
Q Consensus       106 ~~~~~~l~~L~~L~L--~~N~l~~ip~-~~~~~l~~l~~L~~L~ls~~~~  152 (282)
                      ...+...+.|+.++|  ++|.+..-.. .-...+...+.|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            014556677776555  4566652110 0112567888999999887543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.91  E-value=5.8e-05  Score=57.28  Aligned_cols=107  Identities=16%  Similarity=0.076  Sum_probs=75.7

Q ss_pred             CCCceeEEEecC-Cccc-----cccccccCCCCCcEEeccCCCcccc------CCCCCCCccCeEeccCCcCcccC----
Q 023443           17 NAIKERELDLRG-NKIA-----VIENLGATEDQFDTIDLSDNEIVKL------ENMPHLNRLGTLIINNNRITRIN----   80 (282)
Q Consensus        17 ~l~~L~~L~Ls~-N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i------~~~~~l~~L~~L~L~~N~l~~~~----   80 (282)
                      +.++|++|+|++ +.|+     .+-..+...++|+.|++++|.++.-      ..+...+.++.+++++|.+..-.    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            567899999998 5676     2334556788999999999998743      14566789999999999986521    


Q ss_pred             CCcccCCccccEEec--cCCcCCC-----CCCCCCCCCCCCccEEEeeCCcC
Q 023443           81 PNIGEFLPKLHTLVL--TNNRLVN-----LVEIDPLTSLPKLQFLSLLDNSI  125 (282)
Q Consensus        81 ~~~~~~l~~L~~L~L--~~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l  125 (282)
                      ...+...++|+.++|  ++|.+..     +..  .+...+.|+.|++..+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~--~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN--MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH--HHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHH--HHHhCCCcCEEeCcCCCC
Confidence            122346778887555  5666754     222  455678999999977654