Citrus Sinensis ID: 023453

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MSVSGLIGSPSRCCLRIPVCSSGSVRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccc
ccEcEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcc
msvsgligspsrcclripvcssgsvrrfsaftspgkpkdqIKIAYLERWYwagsaqgckkqRTYSIKcamdasygdmsdgstaifprinvrdpykrlgisreASEEEIQAARNFLVQKyaghkpsidAIESAHDKIIMQKFyerrnpkidikKKVREVRQSRVMQAVMSrfqtpstkiIIKTSVAFLVIGVLTvlfpteegptLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMvavippipiikglrsfeVTTSLITYVLLWVSSTYLK
msvsgligspsrcclRIPVCSSGSVRrfsaftspgkpkdqIKIAYLERWYWAgsaqgckkqRTYSIKCAMDASYGdmsdgstaifprinvrdpYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQkfyerrnpkidikkkvrevRQSRVMQAvmsrfqtpstkiiIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK
MSVSGLIGSPSRCCLRIPVCSSGSVRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK
**********SRCCLRIPVCSSGSVRRFSAFT*****KDQIKIAYLERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGI********IQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTY**
**********S******************************************************************************VRDPYKRLGISREASEEEIQAARNFLV**********DAIESAHDKIIM*********************************QTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK
********SPSRCCLRIPVCSSGSVRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK
****GLIGSPSRCCLRIPVCS************************LERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHi
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiii
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MSVSGLIGSPSRCCLRIPVCSSGSVRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
255581398318 conserved hypothetical protein [Ricinus 0.968 0.858 0.746 1e-116
359476644283 PREDICTED: uncharacterized protein LOC10 0.992 0.989 0.727 1e-114
449457558279 PREDICTED: uncharacterized protein LOC10 0.985 0.996 0.727 1e-113
359495671281 PREDICTED: uncharacterized protein LOC10 0.992 0.996 0.720 1e-112
356502938281 PREDICTED: uncharacterized protein LOC10 0.992 0.996 0.713 1e-109
297735929259 unnamed protein product [Vitis vinifera] 0.918 1.0 0.705 1e-107
388520479282 unknown [Lotus japonicus] 1.0 1.0 0.659 1e-104
357518133282 hypothetical protein MTR_8g076220 [Medic 0.996 0.996 0.693 1e-102
388493436282 unknown [Medicago truncatula] 0.996 0.996 0.690 1e-101
297735932226 unnamed protein product [Vitis vinifera] 0.790 0.986 0.808 4e-96
>gi|255581398|ref|XP_002531507.1| conserved hypothetical protein [Ricinus communis] gi|223528860|gb|EEF30861.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 241/284 (84%), Gaps = 11/284 (3%)

Query: 1   MSVSGLIGSPSRCCLRIPVCSSGS-VRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCK 59
           M+VSGL G PSRCCL IPV    S  RR SAFT  G+PK++I    ++R           
Sbjct: 44  MTVSGLTGRPSRCCLWIPVSRPLSFCRRVSAFTCVGEPKERINFLRIDR---------SN 94

Query: 60  KQRTYSIKCAMDASYG-DMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQK 118
            ++T+ IKCAMDASYG DM++    IFPRI+VRDPYKRLGISREASE+EIQ ARNFLV K
Sbjct: 95  VKKTHLIKCAMDASYGGDMTNNQPVIFPRIHVRDPYKRLGISREASEDEIQGARNFLVNK 154

Query: 119 YAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKI 178
           Y+GHKPS+DAIESAHDKIIMQKFYER+NPKIDI KKVREV+QSR +QAV SRF+TPST  
Sbjct: 155 YSGHKPSVDAIESAHDKIIMQKFYERKNPKIDIGKKVREVKQSRFVQAVTSRFRTPSTFT 214

Query: 179 IIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFS 238
           I+KTS+AFLV+G+LTVLFPTEEGPTLQVAISL+AT+YFIH+RLKSK+RAFLY AGAFIFS
Sbjct: 215 IVKTSIAFLVLGILTVLFPTEEGPTLQVAISLMATIYFIHDRLKSKVRAFLYSAGAFIFS 274

Query: 239 WLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK 282
           WLLGTFLMV+VIPP+P IKGLRSFEVTTSLITYVLLWVSSTYLK
Sbjct: 275 WLLGTFLMVSVIPPLPFIKGLRSFEVTTSLITYVLLWVSSTYLK 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476644|ref|XP_003631874.1| PREDICTED: uncharacterized protein LOC100852880 [Vitis vinifera] gi|297735046|emb|CBI17408.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449457558|ref|XP_004146515.1| PREDICTED: uncharacterized protein LOC101208655 [Cucumis sativus] gi|449499948|ref|XP_004160962.1| PREDICTED: uncharacterized LOC101208655 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359495671|ref|XP_002272554.2| PREDICTED: uncharacterized protein LOC100259506 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502938|ref|XP_003520271.1| PREDICTED: uncharacterized protein LOC100803419 [Glycine max] Back     alignment and taxonomy information
>gi|297735929|emb|CBI18705.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388520479|gb|AFK48301.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357518133|ref|XP_003629355.1| hypothetical protein MTR_8g076220 [Medicago truncatula] gi|355523377|gb|AET03831.1| hypothetical protein MTR_8g076220 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388493436|gb|AFK34784.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297735932|emb|CBI18708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:2080883278 AT3G51140 "AT3G51140" [Arabido 0.975 0.989 0.621 2.7e-84
TAIR|locus:2178267258 CDF1 "CELL GROWTH DEFECT FACTO 0.751 0.821 0.413 1.1e-39
TAIR|locus:2080883 AT3G51140 "AT3G51140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 177/285 (62%), Positives = 216/285 (75%)

Query:     1 MSVSGLIGSPSRCCLRIPVCSSGSVRRFS-AFTSPGKPKDQIKIAYLERWYWAGSAQGC- 58
             M+ SGL  +P R   R      G+ +R S AFT   K  ++        W    S++   
Sbjct:     1 MNASGLTVTPPRFHFRWRSDRFGTSQRSSQAFTVLSKLNNRNSA-----WPVLKSSRLAL 55

Query:    59 -KKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQ 117
               ++R   I  AM AS+GDM+D S AIFPRINV+DPYKRLGISR ASE+EIQ ARNFL+Q
Sbjct:    56 PTQRRNAMITRAMSASFGDMADDSAAIFPRINVKDPYKRLGISRMASEDEIQGARNFLIQ 115

Query:   118 KYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTK 177
             +YAGHKPS+DAIESAHDKIIMQKF+ER+NPKIDI KKVR+VRQS+V+  V  RFQTP   
Sbjct:   116 QYAGHKPSVDAIESAHDKIIMQKFHERKNPKIDISKKVRQVRQSKVVNFVFERFQTPPNA 175

Query:   178 IIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIF 237
             +++KT+V F V+GVLTVLFPTEEGPTLQV +SLIAT YFIH+RL+ K+  FLYGAGAFIF
Sbjct:   176 VLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATFYFIHQRLQKKLWTFLYGAGAFIF 235

Query:   238 SWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK 282
             SWL+GTFLMV+VIPP   IKG R FEV +SL++YVLLWV+S+YL+
Sbjct:   236 SWLVGTFLMVSVIPPF--IKGPRGFEVMSSLLSYVLLWVASSYLR 278
GO:0008150 "biological_process" evidence=ND
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
TAIR|locus:2178267 CDF1 "CELL GROWTH DEFECT FACTOR 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.3851.1
hypothetical protein (202 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_XIII0363
hypothetical protein (158 aa)
  ••    0.558
eugene3.00130190
SubName- Full=Putative uncharacterized protein; (339 aa)
  ••    0.541
grail3.0045021002
hypothetical protein (231 aa)
  •   • 0.540
gw1.XIII.1619.1
hypothetical protein (398 aa)
  ••    0.538
gw1.152.106.1
hypothetical protein (199 aa)
  ••    0.518
gw1.XIII.355.1
hypothetical protein (158 aa)
  ••    0.505
estExt_Genewise1_v1.C_LG_XIV2304
hypothetical protein (126 aa)
  •     0.505
eugene3.00061626
hypothetical protein (259 aa)
  •     0.504
estExt_fgenesh4_pg.C_LG_II1804
SubName- Full=Putative uncharacterized protein; (127 aa)
  •     0.504
gw1.I.1529.1
hypothetical protein (221 aa)
  •     0.503

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
pfam11833193 pfam11833, DUF3353, Protein of unknown function (D 2e-64
PRK14276 380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 0.002
PRK14296 372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 0.004
>gnl|CDD|221252 pfam11833, DUF3353, Protein of unknown function (DUF3353) Back     alignment and domain information 
 Score =  199 bits (509), Expect = 2e-64
 Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 15/195 (7%)

Query: 100 SREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVR 159
           S +AS EEIQAARN L+ +YAG + +   IE+A+D I+MQ+  ER+  KI + + +R   
Sbjct: 1   SEDASFEEIQAARNRLLAEYAGDEQARAKIEAAYDAILMQRLRERQEGKIKVPEAIRYAE 60

Query: 160 QSR-------------VMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQV 206
           ++               +Q ++  F  PS + ++   V F ++ +L +L     GP LQ+
Sbjct: 61  RAGKPAASKPVNPSPAWLQRLLPSFDLPSGQGLLIRLVLFGLLALLLLLQGPPSGPQLQL 120

Query: 207 AISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTT 266
           A+   A +YF++ + +   RA L+  G  +   LLG+ L V + P   I+ G  S E   
Sbjct: 121 ALGTGACIYFLNRKGRRFGRALLWSLGGLVVGLLLGSLLAVLLPP--FILPGSLSPEQIQ 178

Query: 267 SLITYVLLWVSSTYL 281
           SL  Y+LLW+ S +L
Sbjct: 179 SLPAYLLLWLGSLFL 193

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Length = 193
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
PF11833194 DUF3353: Protein of unknown function (DUF3353); In 100.0
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 99.27
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.18
KOG0713 336 consensus Molecular chaperone (DnaJ superfamily) [ 99.15
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.14
PTZ00037 421 DnaJ_C chaperone protein; Provisional 99.13
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 99.1
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.1
PRK14296 372 chaperone protein DnaJ; Provisional 99.09
PTZ00100116 DnaJ chaperone protein; Provisional 99.07
PRK14288 369 chaperone protein DnaJ; Provisional 99.07
PRK14299291 chaperone protein DnaJ; Provisional 99.05
PRK14276 380 chaperone protein DnaJ; Provisional 99.05
PRK14287 371 chaperone protein DnaJ; Provisional 99.03
PRK14286 372 chaperone protein DnaJ; Provisional 99.03
PRK14282 369 chaperone protein DnaJ; Provisional 99.02
PRK14283 378 chaperone protein DnaJ; Provisional 99.01
PRK14280 376 chaperone protein DnaJ; Provisional 99.01
PRK14279 392 chaperone protein DnaJ; Provisional 99.0
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.0
PRK10767 371 chaperone protein DnaJ; Provisional 98.99
PRK14295 389 chaperone protein DnaJ; Provisional 98.98
PRK14294 366 chaperone protein DnaJ; Provisional 98.98
PRK14277 386 chaperone protein DnaJ; Provisional 98.96
PRK14300 372 chaperone protein DnaJ; Provisional 98.95
PRK14285 365 chaperone protein DnaJ; Provisional 98.95
PRK14297 380 chaperone protein DnaJ; Provisional 98.95
PRK10266 306 curved DNA-binding protein CbpA; Provisional 98.94
PRK14301 373 chaperone protein DnaJ; Provisional 98.93
PRK14298 377 chaperone protein DnaJ; Provisional 98.92
PRK14291 382 chaperone protein DnaJ; Provisional 98.92
PRK14278 378 chaperone protein DnaJ; Provisional 98.92
PRK14289 386 chaperone protein DnaJ; Provisional 98.9
PRK14281 397 chaperone protein DnaJ; Provisional 98.9
PRK14284 391 chaperone protein DnaJ; Provisional 98.88
PHA03102153 Small T antigen; Reviewed 98.87
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 98.86
PRK14290 365 chaperone protein DnaJ; Provisional 98.83
PRK14292 371 chaperone protein DnaJ; Provisional 98.82
PRK14293 374 chaperone protein DnaJ; Provisional 98.81
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 98.78
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 98.74
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 98.71
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 98.56
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 98.53
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 98.43
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 98.4
PHA02624 647 large T antigen; Provisional 98.4
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 98.36
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 98.28
COG5407 610 SEC63 Preprotein translocase subunit Sec63 [Intrac 98.27
KOG0718 546 consensus Molecular chaperone (DnaJ superfamily) [ 98.23
PRK05014171 hscB co-chaperone HscB; Provisional 98.22
PRK01356166 hscB co-chaperone HscB; Provisional 98.05
PRK00294173 hscB co-chaperone HscB; Provisional 97.99
PRK03578176 hscB co-chaperone HscB; Provisional 97.94
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 97.9
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 97.88
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 97.74
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 97.69
KOG0714 306 consensus Molecular chaperone (DnaJ superfamily) [ 97.51
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 97.3
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 97.3
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 97.17
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 96.98
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 96.89
PF1344662 RPT: A repeated domain in UCH-protein 96.65
PRK01773173 hscB co-chaperone HscB; Provisional 96.58
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 95.57
PF03656127 Pam16: Pam16; InterPro: IPR005341 The Pam16 protei 94.1
COG5269 379 ZUO1 Ribosome-associated chaperone zuotin [Transla 91.69
PF06570206 DUF1129: Protein of unknown function (DUF1129); In 91.53
PRK07668254 hypothetical protein; Validated 89.31
PF11833194 DUF3353: Protein of unknown function (DUF3353); In 87.52
COG4858226 Uncharacterized membrane-bound protein conserved i 87.21
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised Back     alignment and domain information 
Probab=100.00  E-value=4.3e-56  Score=394.90  Aligned_cols=180  Identities=37%  Similarity=0.597  Sum_probs=169.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCCCccchhhhhhhh-----------hhhhhhhh
Q 023453          100 SREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQ-----------SRVMQAVM  168 (282)
Q Consensus       100 s~~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad~-----------~~~~~wl~  168 (282)
                      ||||||||||+|||++++||.+|++.+++||+|||+|+|+||++||+|||+|++++||+|+           .+.++|++
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~   80 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ   80 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence            7999999999999999999999999999999999999999999999999999999999987           13366777


Q ss_pred             hc---ccCCchHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 023453          169 SR---FQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFL  245 (282)
Q Consensus       169 ~~---~~~Ps~~~i~~~~~~f~~L~~~~l~~~~~~~~~LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L  245 (282)
                      +.   |++|+.+++.+++++|++|++|+++++++++++||||+|+++||||||||+++++||++|++|+|++||++|+++
T Consensus        81 ~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l  160 (194)
T PF11833_consen   81 RLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLL  160 (194)
T ss_pred             hcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            66   999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccCCccHHHHHHHHHHHHHHHHhhcc
Q 023453          246 MVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYL  281 (282)
Q Consensus       246 ~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~ssfL  281 (282)
                      .+.+.+.+  .++++++|+++|+++|++||++|+||
T Consensus       161 ~~~l~~~~--~p~~~s~~~~~sl~~~i~lwl~s~fL  194 (194)
T PF11833_consen  161 ASWLPVDI--VPGPWSPEQLVSLFTYILLWLVSLFL  194 (194)
T ss_pred             Hhhccccc--CCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            87766655  45789999999999999999999997

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13446 RPT: A repeated domain in UCH-protein Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues Back     alignment and domain information
>PRK07668 hypothetical protein; Validated Back     alignment and domain information
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised Back     alignment and domain information
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 5e-05
3lz8_A 329 Putative chaperone DNAJ; structure genomics, struc 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 49/313 (15%), Positives = 91/313 (29%), Gaps = 101/313 (32%)

Query: 3   VSGLIGSPSRCCLRIPVCSSGSVRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCKK-- 60
           + G++GS  +  + + VC S  V+    F          KI      +W      C    
Sbjct: 155 IDGVLGS-GKTWVALDVCLSYKVQCKMDF----------KI------FWLNLKN-CNSPE 196

Query: 61  ------QRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNF 114
                 Q+       +D ++   SD S+ I  RI                       R  
Sbjct: 197 TVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRI----------------HSIQAELRRL 237

Query: 115 LVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREV--RQSRVMQAVMSRFQ 172
           L  K   ++  +  + +  +      F        ++  K+  +  R  +V   + +   
Sbjct: 238 LKSK--PYENCLLVLLNVQNAKAWNAF--------NLSCKIL-LTTRFKQVTDFLSA--A 284

Query: 173 TPSTKIIIKTSVAF-------LVIGVLTVLF---PTEEGPTLQVAISLIATM-------- 214
           T +   +   S+         L++  L       P E   T    +S+IA          
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 215 -YFIH---ERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIP---PIPIIKGLRSFEVTTS 267
             + H   ++L + I + L        +     F  ++V P    IP             
Sbjct: 345 DNWKHVNCDKLTTIIESSL---NVLEPAEYRKMFDRLSVFPPSAHIPT------------ 389

Query: 268 LITYVLLWVSSTY 280
            I   L+W     
Sbjct: 390 -ILLSLIWFDVIK 401
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.35
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.35
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.35
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.33
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.3
2guz_A71 Mitochondrial import inner membrane translocase su 99.29
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.28
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.27
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.26
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.26
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.24
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.24
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.23
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.22
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.2
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 99.16
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.14
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.13
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.12
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.07
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.07
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.02
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 98.97
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 98.93
3lz8_A 329 Putative chaperone DNAJ; structure genomics, struc 98.91
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 98.89
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 98.83
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 98.77
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 98.72
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 98.71
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 98.71
2guz_B65 Mitochondrial import inner membrane translocase su 98.69
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 98.57
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 98.49
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 96.9
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 84.35
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.35  E-value=9.2e-13  Score=102.20  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=48.1

Q ss_pred             CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh-------hHHHHHHHHHHHHhhHHhhh
Q 023453           90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP-------SIDAIESAHDKIIMQKFYER  144 (282)
Q Consensus        90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~-------~~~~IEaAYD~Ilm~~L~~R  144 (282)
                      ..|+|++|||+++|+.+|||+||++|..+||||..       ++.+|+.||+.+....-|.+
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            47999999999999999999999999999999953       68899999999776554433
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1xbla_75 a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain 4e-05
d1wjza_94 a.2.3.1 (A:) CSL-type zinc finger-containing prote 6e-05
d1iura_88 a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human 2e-04
d1hdja_77 a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 0.002
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 91  RDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148
           +D Y+ LG+S+ A E EI+ A   L  KY   +   D    A  K I + +    + +
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.28
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.22
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.18
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.14
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.03
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.0
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 98.85
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 98.68
d2e74f132 PetM subunit of the cytochrome b6f complex {Mastig 82.36
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.1e-12  Score=101.27  Aligned_cols=60  Identities=17%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             CCCCCCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------------hhHHHHHHHHHHHHhhHHh
Q 023453           83 AIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------------PSIDAIESAHDKIIMQKFY  142 (282)
Q Consensus        83 ~~fpr~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------------~~~~~IEaAYD~Ilm~~L~  142 (282)
                      -.+.....+|+|++|||+++||++||++||++|..+||||+              +.++.|++||+.+..+..|
T Consensus         8 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R   81 (94)
T d1wjza_           8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK   81 (94)
T ss_dssp             SCCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred             chhhhhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            34455566899999999999999999999999999999994              2367899999998664443
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]} Back     information, alignment and structure