Citrus Sinensis ID: 023457
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | 2.2.26 [Sep-21-2011] | |||||||
| Q5VZV1 | 264 | Protein-lysine methyltran | yes | no | 0.695 | 0.742 | 0.313 | 4e-18 | |
| A6QP81 | 257 | Protein-lysine methyltran | yes | no | 0.645 | 0.708 | 0.321 | 7e-17 | |
| Q8BLU2 | 248 | Protein-lysine methyltran | yes | no | 0.645 | 0.733 | 0.317 | 2e-16 | |
| P40389 | 303 | Rapid response to glucose | yes | no | 0.492 | 0.458 | 0.361 | 3e-16 | |
| A6NDL7 | 271 | Putative methyltransferas | no | no | 0.624 | 0.649 | 0.311 | 1e-15 | |
| Q8CDZ2 | 244 | Protein-lysine methyltran | no | no | 0.549 | 0.635 | 0.331 | 3e-15 | |
| Q58DC7 | 290 | Protein-lysine methyltran | no | no | 0.627 | 0.610 | 0.298 | 5e-14 | |
| Q9H867 | 229 | Protein-lysine methyltran | no | no | 0.546 | 0.672 | 0.343 | 2e-13 | |
| Q8C436 | 228 | Protein-lysine methyltran | no | no | 0.471 | 0.583 | 0.366 | 1e-12 | |
| Q5BLD8 | 218 | Protein-lysine methyltran | no | no | 0.464 | 0.600 | 0.374 | 4e-12 |
| >sp|Q5VZV1|MT21C_HUMAN Protein-lysine methyltransferase METTL21C OS=Homo sapiens GN=METTL21C PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 24/220 (10%)
Query: 42 TSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSL 101
T +S T++HY + + ++ + S G +WP A L L++
Sbjct: 61 TDYASYTQEHYRFAGKEIVIQESIESYGAV--VWPGAMALCQYLEEHAEE---------- 108
Query: 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSV 161
N ILE+G+G GLV + A+ ILGA+VT TDLP VL NLQ+N+ N +
Sbjct: 109 LNFQDAKILEIGAGPGLVSIVAS-ILGAQVTATDLPDVLGNLQYNLLKNT--LQCTAHLP 165
Query: 162 HVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKM 221
V L WGE + +D +LASDVVYH + D LL T+ G
Sbjct: 166 EVKELVWGEDLDKNFPKSAFYYDYVLASDVVYHHYFLDKLLTTMVYLSQPG--------T 217
Query: 222 NFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARV 261
+ A+ R+ D F K K++FD T+ A+ P + ++
Sbjct: 218 VLLWANKFRFSTDYEFLDKFKQVFDT-TLLAEYPESSVKL 256
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 42 TSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSL 101
T+ +S T+++Y + ++ + S G +WP A L L++ H L +
Sbjct: 54 TNYASYTQEYYRFVGKKIVIQESIESYGAV--VWPGAMALCQYLEE---HTEELNLRGA- 107
Query: 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSV 161
ILE+G+G GLV + A+ ILGA+VT TDLP VL NLQ+N+ N ++
Sbjct: 108 ------KILEIGAGPGLVSIVAS-ILGAQVTATDLPDVLGNLQYNLLKNT--LNCTTYLP 158
Query: 162 HVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKM 221
V L WGE +D +LASDVVYH + D LL T+ G
Sbjct: 159 EVKELVWGEGLEQSFPKSTLYYDYVLASDVVYHHYFLDKLLATMVYLCQPG--------T 210
Query: 222 NFVMAHLRRWKKDSVFFKKAKKLFD 246
+ A+ R+ D F K K++FD
Sbjct: 211 VLLWANKFRFSTDYEFLDKFKQVFD 235
|
Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8BLU2|MT21C_MOUSE Protein-lysine methyltransferase METTL21C OS=Mus musculus GN=Mettl21c PE=2 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 95/205 (46%), Gaps = 23/205 (11%)
Query: 42 TSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSL 101
T +S T++HY + + ++ + + G +WP AT L L+ H L +
Sbjct: 45 TDYASYTQEHYQFAGKKIIIQESIENYGTV--VWPGATALCQYLE---DHTEELNLQDA- 98
Query: 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSV 161
ILE+G+G GLV + ++ +LGA+VT TDLP VL NLQ+N+ N +
Sbjct: 99 ------KILEIGAGAGLVSIVSS-LLGAQVTATDLPDVLGNLQYNILKNT--LECTAHLP 149
Query: 162 HVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKM 221
V L WGE +D +LASDVVYH + D LL T+ G
Sbjct: 150 EVRELVWGEDLEQSFPKSTCCYDYVLASDVVYHHYFLDKLLATMVYLSQPG--------T 201
Query: 222 NFVMAHLRRWKKDSVFFKKAKKLFD 246
+ A+ R+ D F K K+ FD
Sbjct: 202 VVLWANKFRFSADYEFLGKFKQAFD 226
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P40389|RRG1_SCHPO Rapid response to glucose protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrg1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 59 TLVIRQ--LPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGT 116
++V+R+ + L FK W +A L +N P LSN +N LELG+GT
Sbjct: 99 SVVLREPTMTYNTLGFKTWGSAPLL----------SANLPKWEDLSNS--INALELGAGT 146
Query: 117 GLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEA--EAN 174
GLVG++AA LG +V TDLP ++ N+Q+NVD N+ LI GSV L W + N
Sbjct: 147 GLVGISAAIQLGWQVVCTDLPDIVENMQYNVDYNSELIQQYAGSVSCHVLDWMNPPDDDN 206
Query: 175 DVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFL 209
+ + + F I+ASD +Y H + + R +L
Sbjct: 207 RPSWLIKPFQRIIASDCIYETHFGELAIALFRKYL 241
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|A6NDL7|MT21E_HUMAN Putative methyltransferase-like protein 21E pseudogene OS=Homo sapiens GN=METTL21EP PE=5 SV=2 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTV 133
+WP+A L L+ + N N++E+G+GTGLV + A+ +LGA VT
Sbjct: 95 VWPSALVLCYFLET----------NAKQYNMVDKNVIEIGAGTGLVSIVAS-LLGAHVTA 143
Query: 134 TDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVY 193
TDLP +L NLQ+N+ N + S V L WG A + FD ILA+DVVY
Sbjct: 144 TDLPELLGNLQYNISRNTKMKS--KHLPQVKELSWGVALDTNFPRSSNNFDYILAADVVY 201
Query: 194 HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHAD 253
+ LL+T K+ + A R +K++ F + K+LFD+E I +
Sbjct: 202 AHPFLEELLITFDHLC--------KETTIILWAMKFRLEKENKFVDRFKELFDLEEI-SS 252
Query: 254 LPCNGARVGVVVYRMTGKAKSS 275
P + + +Y+ K + S
Sbjct: 253 FPS----LNIKLYKAVKKNRRS 270
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 23/178 (12%)
Query: 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTV 133
+WP+A L L+ +H N N++E+G+GTGLV + A+ +LGA+V
Sbjct: 68 VWPSALVLCYFLE---THAKQY-------NMVDKNVIEIGAGTGLVSIVAS-LLGARVIA 116
Query: 134 TDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVY 193
TDLP +L NLQ+N+ N + V L WG A + FD ILA+DVVY
Sbjct: 117 TDLPELLGNLQYNISRNTKMKC--KHLPQVKELSWGVALDRNFPRSSNNFDYILAADVVY 174
Query: 194 HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR-RWKKDSVFFKKAKKLFDVETI 250
+ LL+T K+ ++ +R R +K++ F K K+LFD+E I
Sbjct: 175 AHPFLEELLMTFDHLC---------KETTIILWAMRFRLEKENKFVDKFKELFDLEEI 223
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q58DC7|MT21E_BOVIN Protein-lysine methyltransferase METTL21E OS=Bos taurus GN=METTL21E PE=2 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 34/211 (16%)
Query: 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTV 133
+WP+A L L+ N N++E+G+GTGLV + A+ +LGA VT
Sbjct: 95 VWPSALVLCYFLETNVKQ----------YNLVDKNVIEIGAGTGLVSIVAS-LLGAHVTA 143
Query: 134 TDLPHVLTNLQFNVDANAGLISLRGGSVH---VAPLRWGEAEANDVAVVGREFDVILASD 190
TDLP +L NLQ+N+ N + + H V L WG A + FD ILA+D
Sbjct: 144 TDLPELLGNLQYNISRNT-----KTKAKHLPQVKELSWGVALDKNFPRASINFDYILAAD 198
Query: 191 VVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR-RWKKDSVFFKKAKKLFDVET 249
VVY + LLVT K+ ++ ++ R +K++ F + ++LFD+E
Sbjct: 199 VVYAHPFLEELLVTFDHLC---------KETTVILWVMKFRLEKENKFVDRFEQLFDLEE 249
Query: 250 IHADLPCNGARVGVVVYRMTGKAKSSKSSSQ 280
I + P + + +Y+ K + S Q
Sbjct: 250 I-SSFPS----LNIKLYKAMKKNQKSACYPQ 275
|
Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 18/172 (10%)
Query: 39 DTLTSSSSETEQHYMPSIE----STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSN 94
DTL SS + + ++ +E + L ++Q S G+ +W AA L L+ + +
Sbjct: 3 DTLESSLEDPLRSFVRVLEKRDGTVLRLQQYSSGGVGCVVWDAAIVLSKYLE---TPEFS 59
Query: 95 SPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLI 154
A +LS + ++LELGSGTG VG+ AA LGA V VTDL + L+ N++ N L+
Sbjct: 60 GDGAHALS---RRSVLELGSGTGAVGLMAAT-LGADVVVTDLEELQDLLKMNINMNKHLV 115
Query: 155 SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLR 206
+ GSV L+WGE ++ D IL +D +Y++ +PLL TL+
Sbjct: 116 T---GSVQAKVLKWGE----EIEGFPSPPDFILMADCIYYEESLEPLLKTLK 160
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 17/150 (11%)
Query: 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNS-PLASSLSNGCQLNILELGSGT 116
+ L ++Q S G+ +W AA +L ++ P S A +LS + ++LELGSGT
Sbjct: 26 TVLRLQQYGSGGVGCVVWDAAI----VLSKYLETPGFSGDGAHALS---RRSVLELGSGT 78
Query: 117 GLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176
G VG+ AA LGA V VTDL + L+ N+D N L++ GSV L+WGE + +
Sbjct: 79 GAVGLMAAT-LGADVIVTDLEELQDLLKMNIDMNKHLVT---GSVQAKVLKWGEDIEDLM 134
Query: 177 AVVGREFDVILASDVVYHDHLFDPLLVTLR 206
+ D IL +D +Y++ +PLL TL+
Sbjct: 135 SP-----DYILMADCIYYEESLEPLLKTLK 159
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5BLD8|MT21A_DANRE Protein-lysine methyltransferase METTL21A OS=Danio rerio GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 16/147 (10%)
Query: 108 NILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLR 167
++ELG+GTGLVG+ AA+LGA VT+TD L L NV N + R +V V+ L
Sbjct: 68 RVIELGAGTGLVGI-VAALLGANVTITDREPALEFLTANVHEN--IPQGRQKAVQVSELT 124
Query: 168 WGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227
WGE D+ G +D+IL +D+VY + F LL TL L+SG+ V+
Sbjct: 125 WGENL--DLYPQG-GYDLILGADIVYLEETFPALLQTLE-HLSSGD--------TVVLLS 172
Query: 228 LR-RWKKDSVFFKKAKKLFDVETIHAD 253
R R+++D F + ++ F V+ +H D
Sbjct: 173 CRIRYERDERFLTELRQRFSVQEVHYD 199
|
Probable methyltransferase. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | ||||||
| 255561164 | 268 | conserved hypothetical protein [Ricinus | 0.907 | 0.955 | 0.594 | 6e-82 | |
| 225430764 | 270 | PREDICTED: methyltransferase-like protei | 0.929 | 0.970 | 0.596 | 1e-81 | |
| 224096972 | 272 | predicted protein [Populus trichocarpa] | 0.907 | 0.941 | 0.600 | 1e-78 | |
| 356498367 | 259 | PREDICTED: methyltransferase-like protei | 0.904 | 0.984 | 0.562 | 3e-75 | |
| 297792225 | 270 | hypothetical protein ARALYDRAFT_495016 [ | 0.886 | 0.925 | 0.577 | 1e-74 | |
| 15240506 | 274 | Putative methyltransferase family protei | 0.900 | 0.927 | 0.562 | 2e-74 | |
| 449451525 | 267 | PREDICTED: methyltransferase-like protei | 0.840 | 0.887 | 0.543 | 2e-71 | |
| 357518323 | 245 | hypothetical protein MTR_8g077610 [Medic | 0.843 | 0.971 | 0.549 | 7e-70 | |
| 297819792 | 250 | hypothetical protein ARALYDRAFT_485437 [ | 0.790 | 0.892 | 0.577 | 1e-66 | |
| 15230327 | 251 | Putative methyltransferase family protei | 0.787 | 0.884 | 0.565 | 3e-64 |
| >gi|255561164|ref|XP_002521594.1| conserved hypothetical protein [Ricinus communis] gi|223539272|gb|EEF40865.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 160/269 (59%), Positives = 199/269 (73%), Gaps = 13/269 (4%)
Query: 4 QENDEDDMEINPAKMLFPADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIESTLVIR 63
QE+DE+D I+P K+L P E + +T T + + ++HY+PSI ST+++R
Sbjct: 12 QEDDEED--IDPMKILLPDYE----------LELHNTTTPNLQQDQRHYIPSINSTIMVR 59
Query: 64 QLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAA 123
QLPSQGLSF+LWPAATTL TLLD+ S P+ PL+ S C NILELGSGTGLVG+AA
Sbjct: 60 QLPSQGLSFQLWPAATTLFTLLDRHRSDPTTGPLSPIFSPDCTPNILELGSGTGLVGIAA 119
Query: 124 AAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183
A L A VTVTDLPHV++NLQFNVDANA ++L GG+V+VA LRWGE D +G++F
Sbjct: 120 AVTLAANVTVTDLPHVISNLQFNVDANADTMALFGGTVNVAALRWGEEGDGDFECIGQDF 179
Query: 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMN-FVMAHLRRWKKDSVFFKKAK 242
DVILASDVVYHDHL++PLL TLRL + +G E KKKK FVM HLRRWKKDS FFK+AK
Sbjct: 180 DVILASDVVYHDHLYEPLLHTLRLVMGAGAGEKKKKKKKVFVMTHLRRWKKDSAFFKRAK 239
Query: 243 KLFDVETIHADLPCNGARVGVVVYRMTGK 271
K FDV+ I+ D PC+G+R+GVVVYR + K
Sbjct: 240 KWFDVDVIYVDSPCHGSRIGVVVYRFSQK 268
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430764|ref|XP_002266868.1| PREDICTED: methyltransferase-like protein 21B-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/280 (59%), Positives = 201/280 (71%), Gaps = 18/280 (6%)
Query: 1 MATQENDEDDMEINPAKMLFPADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIESTL 60
M E+DED E +P K+L P DE P LT + + +++ SI++T+
Sbjct: 1 MVAGESDED--ETDPMKVLLP-DE-----PEVEKRLTSADEDAQKQRLQDNHIHSIDTTV 52
Query: 61 VIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLA---SSLSNGCQ---LNILELGS 114
VIRQLPSQGLSF+LWPAATTLVTLLDQ SHP+NSPL+ S+LSNG L ILELGS
Sbjct: 53 VIRQLPSQGLSFQLWPAATTLVTLLDQLRSHPTNSPLSPILSALSNGQDHRPLRILELGS 112
Query: 115 GTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN 174
GTGLVG+ AAA L A VTVTDLPHV+ NLQFNV N+ + GG+V VAPLRWG EA+
Sbjct: 113 GTGLVGIVAAATLSANVTVTDLPHVIPNLQFNVQMNSHIWGPHGGTVEVAPLRWG--EAD 170
Query: 175 DVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKD 234
DV ++GREFD+ILASDVVYHDHL+DPLL TLR+ + G KKM FVMAHLRRWKK+
Sbjct: 171 DVELIGREFDLILASDVVYHDHLYDPLLQTLRMLM--GLEGADNKKMMFVMAHLRRWKKE 228
Query: 235 SVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKAKS 274
S FF+KAKKLF VET+H D P G+RVGVV Y GK+++
Sbjct: 229 SAFFRKAKKLFQVETLHVDRPTQGSRVGVVTYSFRGKSQN 268
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096972|ref|XP_002310804.1| predicted protein [Populus trichocarpa] gi|222853707|gb|EEE91254.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/278 (60%), Positives = 205/278 (73%), Gaps = 22/278 (7%)
Query: 1 MATQENDEDDME--INPAKMLFPADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIES 58
MAT + EDD E ++P K+L P ++ NG + + DT + E +QHY+ SI+S
Sbjct: 1 MATPQQQEDDSEDDLDPIKILLPDNQ---NG---FSKIQHDT---PAQEVQQHYIHSIKS 51
Query: 59 TLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQ---LNILELGSG 115
T+VIRQ PSQGLSF+LWPAATTL TLLD + P SP+ ++SNG L ILELGSG
Sbjct: 52 TVVIRQFPSQGLSFQLWPAATTLFTLLDNHSTSPL-SPILDTISNGSTHGALKILELGSG 110
Query: 116 TGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175
TG+VG+AAA LGAKVTVTDLPHV+ NLQFNVDANA +++ RGG+V VA LRWGE D
Sbjct: 111 TGIVGIAAAVTLGAKVTVTDLPHVIPNLQFNVDANADVLASRGGAVDVAALRWGEDA--D 168
Query: 176 VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDS 235
V VGREFD++LASDVVY+D+L++PLL TLRL L GE KKM FVMAHLRRWKKDS
Sbjct: 169 VEAVGREFDLVLASDVVYYDYLYEPLLKTLRL-LMLGE----GKKMVFVMAHLRRWKKDS 223
Query: 236 VFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKAK 273
VFFK+AKK+F+VE +H D PC G+R+GV VYR KA+
Sbjct: 224 VFFKRAKKVFNVEVVHVDSPCEGSRIGVAVYRFAAKAQ 261
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498367|ref|XP_003518024.1| PREDICTED: methyltransferase-like protein 21A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/274 (56%), Positives = 196/274 (71%), Gaps = 19/274 (6%)
Query: 1 MATQENDEDDMEINPAKMLF--PADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIES 58
MATQE++ED++ INP ML D+ + LP A L + H + SI+S
Sbjct: 1 MATQEDEEDEI-INPFTMLLIHEEDKPSVSATLPAAAPNHHLL-------QHHPLRSIQS 52
Query: 59 TLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHP-SNSPLASSLSNGCQLNILELGSGTG 117
T+ IRQLPS+GLSF+LWPAAT+LV+LLD +P S SPL+++L + I+ELGSGTG
Sbjct: 53 TVAIRQLPSEGLSFQLWPAATSLVSLLDLHRENPPSASPLSAALHG--RRRIIELGSGTG 110
Query: 118 LVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177
LVG+AAAA LGA VT+TDLPHV+ NL+FN DANA ++ GG + VAPLRWG A DV
Sbjct: 111 LVGIAAAATLGAHVTLTDLPHVVPNLRFNADANAAVVGPTGGVITVAPLRWGHAA--DVE 168
Query: 178 VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVF 237
+GREFD++LASDVVYHDHL++PLL TLRL + S + KM FVMAH+RRWKK+S F
Sbjct: 169 AIGREFDLVLASDVVYHDHLYEPLLETLRLMMLS----ERNGKMVFVMAHMRRWKKESAF 224
Query: 238 FKKAKKLFDVETIHADLPCNGARVGVVVYRMTGK 271
FKKA+K F+V+ +H D PC+G+RVGVVVYR K
Sbjct: 225 FKKARKHFNVDVLHTDTPCDGSRVGVVVYRFVAK 258
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792225|ref|XP_002863997.1| hypothetical protein ARALYDRAFT_495016 [Arabidopsis lyrata subsp. lyrata] gi|297309832|gb|EFH40256.1| hypothetical protein ARALYDRAFT_495016 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/270 (57%), Positives = 192/270 (71%), Gaps = 20/270 (7%)
Query: 5 ENDEDDMEINPAKMLFPADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIESTLVIRQ 64
+D+++ + AKML D P+P L + E ++ + SIESTLVIR+
Sbjct: 7 RDDDEENDTYEAKMLLIGD-GESLPPIP--------LRDGAPELHKYNIRSIESTLVIRE 57
Query: 65 LPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSN--GCQLNILELGSGTGLVGMA 122
L SQGLSF+LWPAA+TLVTLLD + PSNSPL ++LS+ LNILELGSGTG+VG+A
Sbjct: 58 LTSQGLSFQLWPAASTLVTLLDNYRRDPSNSPLTATLSSLKPSPLNILELGSGTGVVGIA 117
Query: 123 AAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-AVVGR 181
AA L A VTVTDLPHVL NL FN +ANA + GG V VAPLRWGEA+ DV V+GR
Sbjct: 118 AAITLSANVTVTDLPHVLDNLNFNAEANAETVERFGGKVDVAPLRWGEAD--DVEEVLGR 175
Query: 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA 241
D+ILASDVVYHDHL++PLL TLRL G K++ F+MAHLRRWKK+SVFFKKA
Sbjct: 176 NVDLILASDVVYHDHLYEPLLKTLRLMQLEG------KRLVFLMAHLRRWKKESVFFKKA 229
Query: 242 KKLFDVETIHADLPCNGARVGVVVYRMTGK 271
+KLFDV+ IH+D+P G+R+GVVVYR T K
Sbjct: 230 RKLFDVDVIHSDVPQQGSRIGVVVYRFTTK 259
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240506|ref|NP_199767.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|10177622|dbj|BAB10769.1| unnamed protein product [Arabidopsis thaliana] gi|332008447|gb|AED95830.1| Putative methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 189/270 (70%), Gaps = 16/270 (5%)
Query: 5 ENDEDDMEINPAKMLFPADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIESTLVIRQ 64
+D+++ + AKML + LP L L E +++ + SIEST+VIR+
Sbjct: 7 RDDDEENDTYEAKMLLIGENGLDGESLPPTPLRDGAL-----ELQKYNISSIESTVVIRE 61
Query: 65 LPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLAS---SLSNGCQLNILELGSGTGLVGM 121
L SQGLSF+LWPAA+T VTLLD + PS SPL + SL LNILELGSGTGLVG+
Sbjct: 62 LTSQGLSFQLWPAASTFVTLLDNYRRDPSKSPLTATLLSLKKPSPLNILELGSGTGLVGI 121
Query: 122 AAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181
AAA L A VTVTDLPHVL NL FN +ANA ++ GG V+VAPLRWGEA+ DV V+G+
Sbjct: 122 AAAITLSANVTVTDLPHVLDNLNFNAEANAEIVERFGGKVNVAPLRWGEAD--DVEVLGQ 179
Query: 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA 241
D+ILASDVVYHDHL++PLL TLRL G K++ F+MAHLRRWKK+SVFFKKA
Sbjct: 180 NVDLILASDVVYHDHLYEPLLKTLRLMQLEG------KRLIFLMAHLRRWKKESVFFKKA 233
Query: 242 KKLFDVETIHADLPCNGARVGVVVYRMTGK 271
+KLFDV+ IH+D+P +R+GVVVYR T K
Sbjct: 234 RKLFDVDVIHSDVPQESSRIGVVVYRFTTK 263
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451525|ref|XP_004143512.1| PREDICTED: methyltransferase-like protein 21C-like [Cucumis sativus] gi|449519816|ref|XP_004166930.1| PREDICTED: methyltransferase-like protein 21C-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 183/265 (69%), Gaps = 28/265 (10%)
Query: 13 INPAKMLFPADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIESTLVIRQLPSQGLSF 72
I+P ++ P++E +D + +SE H++PSI+STL IRQLPSQGLSF
Sbjct: 12 ISPISLILPSEE-------------KDAV---ASELLHHFIPSIDSTLSIRQLPSQGLSF 55
Query: 73 KLWPAATTLVTLLDQFCSHPSNSPLASSL------SNGCQLNILELGSGTGLVGMAAAAI 126
+LWPAATTLV LLD S P +PL +L S L +LE+GSGTG+VG+AAAA
Sbjct: 56 QLWPAATTLVNLLDDHRSRPQTNPLTPTLTALRHASKSPTLKVLEIGSGTGIVGIAAAAT 115
Query: 127 LGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186
L AKVT+TDL HV++NLQFNV+ANAG+++ GG V VAPL WGEA D ++ +FD+I
Sbjct: 116 LRAKVTITDLSHVISNLQFNVEANAGILAANGGCVQVAPLHWGEAI--DAELIELDFDLI 173
Query: 187 LASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFD 246
LASDVVYHDHL++PL+ TL+ FL G M F+MAHLRRWKKDS FF+KA+K F+
Sbjct: 174 LASDVVYHDHLYNPLIQTLKDFLLGG----GNPNMVFLMAHLRRWKKDSAFFRKARKFFE 229
Query: 247 VETIHADLPCNGARVGVVVYRMTGK 271
VE +H D P G+R GVVVYR T K
Sbjct: 230 VEVLHTDPPPPGSRTGVVVYRFTAK 254
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518323|ref|XP_003629450.1| hypothetical protein MTR_8g077610 [Medicago truncatula] gi|355523472|gb|AET03926.1| hypothetical protein MTR_8g077610 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 176/251 (70%), Gaps = 13/251 (5%)
Query: 22 ADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTL 81
+D P P Q L + + H++ SI+ST+ IR LPSQGLSF+LWPAAT+L
Sbjct: 3 SDSDEETNPFPTV---QPNLLPNQELLQTHFLHSIQSTVTIRSLPSQGLSFQLWPAATSL 59
Query: 82 VTLLDQFCSHPSNSPLASSLSN-GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVL 140
VTLLD +P+ SPL++ LS ILELGSGTG+VG+ AAA LG VT+TDLPHV+
Sbjct: 60 VTLLDNHRLNPTTSPLSTVLSTLHTPPRILELGSGTGIVGIVAAATLGTNVTLTDLPHVV 119
Query: 141 TNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDP 200
NL+FN +ANA + GGSV A LRWG A DV ++G EFDV++ASDVVYHDHL++P
Sbjct: 120 PNLKFNAEANAEAVGSNGGSVTFASLRWGHAA--DVEMIGGEFDVVIASDVVYHDHLYEP 177
Query: 201 LLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGAR 260
L+ TLRL L KK++ FVMAH++RWKK+S+FFKKA+K F V+ +H D PCNG+R
Sbjct: 178 LIETLRLML-------IKKEIVFVMAHMKRWKKESLFFKKARKYFFVDVLHVDAPCNGSR 230
Query: 261 VGVVVYRMTGK 271
VGV+VYR GK
Sbjct: 231 VGVIVYRFVGK 241
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819792|ref|XP_002877779.1| hypothetical protein ARALYDRAFT_485437 [Arabidopsis lyrata subsp. lyrata] gi|297323617|gb|EFH54038.1| hypothetical protein ARALYDRAFT_485437 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 172/239 (71%), Gaps = 16/239 (6%)
Query: 44 SSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSN 103
S SE + + SIEST+VIRQLPSQG++FKLW ATTLVTLLD + P+ SPL + S+
Sbjct: 19 SESEFHMNRINSIESTVVIRQLPSQGIAFKLWLPATTLVTLLDNYRRDPNTSPLTRTFSS 78
Query: 104 --------GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLIS 155
+NI ELGSGTG+VG+AAAA LGA VTVTDLP+V+ NL+FNVDANA +++
Sbjct: 79 FQSDGSDSSSPINIFELGSGTGIVGIAAAATLGANVTVTDLPNVIENLKFNVDANAEVVA 138
Query: 156 LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPE 215
GG VHVA LRWG E NDV V+G+ D+ILASDVVYH+ L+DPLL TLR L G
Sbjct: 139 RFGGKVHVASLRWG--EINDVEVLGQNVDLILASDVVYHERLYDPLLKTLRFLLLEG--- 193
Query: 216 PKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKAKS 274
K F+MAHL+RWKK+S+FFKKA++ FDV+ IH D P G+R+GVVVYR K ++
Sbjct: 194 ---SKREFLMAHLKRWKKESIFFKKARRFFDVDVIHCDDPQEGSRIGVVVYRFAPKNQT 249
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230327|ref|NP_190654.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|4835236|emb|CAB42914.1| putative protein [Arabidopsis thaliana] gi|92856607|gb|ABE77407.1| At3g50850 [Arabidopsis thaliana] gi|332645197|gb|AEE78718.1| Putative methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/237 (56%), Positives = 172/237 (72%), Gaps = 15/237 (6%)
Query: 46 SETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSN-- 103
SE +++ + SIEST+VIRQLP+QG++FKLW ATTLVTLLD + P+ SPL + S+
Sbjct: 21 SELQKYRINSIESTVVIRQLPTQGIAFKLWIPATTLVTLLDNYRRDPNISPLNRTFSSFQ 80
Query: 104 ------GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLR 157
+NI+ELGSGTG+VG+AAAA LGA VTVTDLP+V+ NL+FN DANA +++
Sbjct: 81 SDGSDSSSPINIVELGSGTGIVGIAAAATLGANVTVTDLPNVIENLKFNADANAQVVAKF 140
Query: 158 GGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPK 217
GG VHVA LRWGE + DV +G+ D+ILASDVVYH HL++PLL TLR L G E
Sbjct: 141 GGKVHVASLRWGEID--DVESLGQNVDLILASDVVYHVHLYEPLLKTLRFLLLEGSSERV 198
Query: 218 KKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKAKS 274
F+MAHL+RWKK+S+FFKKA++ FDV+ IH D P GAR+GVVVYR K ++
Sbjct: 199 -----FLMAHLKRWKKESIFFKKARRFFDVDVIHCDDPQEGARIGVVVYRFAPKNQN 250
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | ||||||
| TAIR|locus:2157859 | 274 | AT5G49560 "AT5G49560" [Arabido | 0.897 | 0.923 | 0.505 | 1.2e-58 | |
| TAIR|locus:2078002 | 251 | AT3G50850 "AT3G50850" [Arabido | 0.776 | 0.872 | 0.517 | 1.5e-53 | |
| UNIPROTKB|G4MX07 | 402 | MGG_01212 "Uncharacterized pro | 0.517 | 0.363 | 0.329 | 6.7e-16 | |
| UNIPROTKB|Q5VZV1 | 264 | METTL21C "Protein-lysine methy | 0.528 | 0.564 | 0.341 | 7.7e-16 | |
| RGD|1561425 | 248 | Mettl21c "methyltransferase li | 0.528 | 0.600 | 0.329 | 9.8e-16 | |
| MGI|MGI:3611450 | 248 | Mettl21c "methyltransferase li | 0.528 | 0.600 | 0.329 | 2e-15 | |
| UNIPROTKB|A6QP81 | 257 | METTL21C "Protein-lysine methy | 0.524 | 0.575 | 0.351 | 3.3e-15 | |
| POMBASE|SPCC338.11c | 303 | rrg1 "protein-lysine N-methylt | 0.365 | 0.339 | 0.409 | 1.7e-14 | |
| ZFIN|ZDB-GENE-060825-19 | 223 | mettl21d "methyltransferase li | 0.539 | 0.681 | 0.345 | 2.3e-14 | |
| UNIPROTKB|Q9H867 | 229 | METTL21D "Protein-lysine methy | 0.546 | 0.672 | 0.325 | 4.9e-14 |
| TAIR|locus:2157859 AT5G49560 "AT5G49560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 136/269 (50%), Positives = 171/269 (63%)
Query: 6 NDEDDMEINPAKMLFPADETHGNGPLPMAMLTQDTLTSSSSETEQHYMPSIESTLVIRQL 65
+D+++ + AKML + NG L L L + E +++ + SIEST+VIR+L
Sbjct: 8 DDDEENDTYEAKMLLIGE----NG-LDGESLPPTPLRDGALELQKYNISSIESTVVIREL 62
Query: 66 PSQGLSFKLWPAATTLVTLLDQFC---XXXXXXXXXXXXXXGCQLNILELGSGTGLVGMA 122
SQGLSF+LWPAA+T VTLLD + LNILELGSGTGLVG+A
Sbjct: 63 TSQGLSFQLWPAASTFVTLLDNYRRDPSKSPLTATLLSLKKPSPLNILELGSGTGLVGIA 122
Query: 123 AAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182
AA L A VTVTDLPHVL NL FN +ANA ++ GG V+VAPLRWGEA+ DV V+G+
Sbjct: 123 AAITLSANVTVTDLPHVLDNLNFNAEANAEIVERFGGKVNVAPLRWGEAD--DVEVLGQN 180
Query: 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWXXXXXXXXXXX 242
D+ILASDVVYHDHL++PLL TLRL G K++ F+MAHLRRW
Sbjct: 181 VDLILASDVVYHDHLYEPLLKTLRLMQLEG------KRLIFLMAHLRRWKKESVFFKKAR 234
Query: 243 XLFDVETIHADLPCNGARVGVVVYRMTGK 271
LFDV+ IH+D+P +R+GVVVYR T K
Sbjct: 235 KLFDVDVIHSDVPQESSRIGVVVYRFTTK 263
|
|
| TAIR|locus:2078002 AT3G50850 "AT3G50850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 121/234 (51%), Positives = 150/234 (64%)
Query: 46 SETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQF--------CXXXXXXXX 97
SE +++ + SIEST+VIRQLP+QG++FKLW ATTLVTLLD +
Sbjct: 21 SELQKYRINSIESTVVIRQLPTQGIAFKLWIPATTLVTLLDNYRRDPNISPLNRTFSSFQ 80
Query: 98 XXXXXXGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLR 157
+NI+ELGSGTG+VG+AAAA LGA VTVTDLP+V+ NL+FN DANA +++
Sbjct: 81 SDGSDSSSPINIVELGSGTGIVGIAAAATLGANVTVTDLPNVIENLKFNADANAQVVAKF 140
Query: 158 GGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPK 217
GG VHVA LRWGE + DV +G+ D+ILASDVVYH HL++PLL TLR L G E
Sbjct: 141 GGKVHVASLRWGEID--DVESLGQNVDLILASDVVYHVHLYEPLLKTLRFLLLEGSSERV 198
Query: 218 KKKMNFVMAHLRRWXXXXXXXXXXXXLFDVETIHADLPCNGARVGVVVYRMTGK 271
F+MAHL+RW FDV+ IH D P GAR+GVVVYR K
Sbjct: 199 -----FLMAHLKRWKKESIFFKKARRFFDVDVIHCDDPQEGARIGVVVYRFAPK 247
|
|
| UNIPROTKB|G4MX07 MGG_01212 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 53/161 (32%), Positives = 83/161 (51%)
Query: 47 ETEQHYMPSIESTLVIRQLPSQG--LSFKLWPAATTLVTLLDQFCXX------XXXXXXX 98
E+E Y P E LVIR+ P G L K W ++ L +L +F
Sbjct: 118 ESENGYAP-FE--LVIREPPLTGDSLGLKTWGSSYALARMLGEFAAGPLQHLIQSPALPS 174
Query: 99 XXXXXGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRG 158
Q +LELGSGTGL+G+AAAAI +VT++DLP ++ NL+ NV+ N ++ G
Sbjct: 175 SSLQQSPQTRVLELGSGTGLLGLAAAAIWACQVTLSDLPDIMPNLRHNVERNQPIVKAMG 234
Query: 159 GSVHVAPLRWGEAEANDVA--VVG--REFDVILASDVVYHD 195
G + L WG +++ + G +F++++ +D +Y D
Sbjct: 235 GDLAAGALTWGGNGDDEIDPDLFGDKNQFEMVIVADPMYDD 275
|
|
| UNIPROTKB|Q5VZV1 METTL21C "Protein-lysine methyltransferase METTL21C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 56/164 (34%), Positives = 80/164 (48%)
Query: 42 TSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCXXXXXXXXXXXX 101
T +S T++HY + + ++ + S G +WP A L L++
Sbjct: 61 TDYASYTQEHYRFAGKEIVIQESIESYGAV--VWPGAMALCQYLEEHAEELNFQDA---- 114
Query: 102 XXGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSV 161
ILE+G+G GLV + A+ ILGA+VT TDLP VL NLQ+N+ N +
Sbjct: 115 ------KILEIGAGPGLVSIVAS-ILGAQVTATDLPDVLGNLQYNLLKNT--LQCTAHLP 165
Query: 162 HVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTL 205
V L WGE + +D +LASDVVYH + D LL T+
Sbjct: 166 EVKELVWGEDLDKNFPKSAFYYDYVLASDVVYHHYFLDKLLTTM 209
|
|
| RGD|1561425 Mettl21c "methyltransferase like 21C" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 54/164 (32%), Positives = 79/164 (48%)
Query: 42 TSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCXXXXXXXXXXXX 101
T +S T++HY + + ++ + + G +WP AT L L+
Sbjct: 45 TDYASYTQEHYHFAGKKIIIQESIENYGTV--VWPGATALCQYLEDHTEELNLEDA---- 98
Query: 102 XXGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSV 161
ILE+G+G GLV + ++ +LGA+VT TDLP VL NLQ+N+ N +
Sbjct: 99 ------KILEIGAGPGLVSIVSS-LLGAQVTATDLPDVLGNLQYNISKNT--LECTAHLP 149
Query: 162 HVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTL 205
V L WGE +D +LASDVVYH + D LL T+
Sbjct: 150 EVKELVWGEDLDQKFPKSSFYYDYVLASDVVYHHYFLDKLLATM 193
|
|
| MGI|MGI:3611450 Mettl21c "methyltransferase like 21C" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 54/164 (32%), Positives = 79/164 (48%)
Query: 42 TSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCXXXXXXXXXXXX 101
T +S T++HY + + ++ + + G +WP AT L L+
Sbjct: 45 TDYASYTQEHYQFAGKKIIIQESIENYGTV--VWPGATALCQYLEDHTEELNLQDA---- 98
Query: 102 XXGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSV 161
ILE+G+G GLV + ++ +LGA+VT TDLP VL NLQ+N+ N +
Sbjct: 99 ------KILEIGAGAGLVSIVSS-LLGAQVTATDLPDVLGNLQYNILKNT--LECTAHLP 149
Query: 162 HVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTL 205
V L WGE +D +LASDVVYH + D LL T+
Sbjct: 150 EVRELVWGEDLEQSFPKSTCCYDYVLASDVVYHHYFLDKLLATM 193
|
|
| UNIPROTKB|A6QP81 METTL21C "Protein-lysine methyltransferase METTL21C" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 58/165 (35%), Positives = 85/165 (51%)
Query: 42 TSSSSETEQHYMPSIESTLVIRQ-LPSQGLSFKLWPAATTLVTLLDQFCXXXXXXXXXXX 100
T+ +S T+++Y + +VI++ + S G +WP A L L++
Sbjct: 54 TNYASYTQEYYR-FVGKKIVIQESIESYGAV--VWPGAMALCQYLEEH--------TEEL 102
Query: 101 XXXGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGS 160
G + ILE+G+G GLV + A+ ILGA+VT TDLP VL NLQ+N+ N ++
Sbjct: 103 NLRGAK--ILEIGAGPGLVSIVAS-ILGAQVTATDLPDVLGNLQYNLLKNT--LNCTTYL 157
Query: 161 VHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTL 205
V L WGE +D +LASDVVYH + D LL T+
Sbjct: 158 PEVKELVWGEGLEQSFPKSTLYYDYVLASDVVYHHYFLDKLLATM 202
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| POMBASE|SPCC338.11c rrg1 "protein-lysine N-methyltransferase Rrg1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 187 (70.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 43/105 (40%), Positives = 62/105 (59%)
Query: 107 LNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPL 166
+N LELG+GTGLVG++AA LG +V TDLP ++ N+Q+NVD N+ LI GSV L
Sbjct: 137 INALELGAGTGLVGISAAIQLGWQVVCTDLPDIVENMQYNVDYNSELIQQYAGSVSCHVL 196
Query: 167 RWGEAEAND--VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFL 209
W +D + + + F I+ASD +Y H + + R +L
Sbjct: 197 DWMNPPDDDNRPSWLIKPFQRIIASDCIYETHFGELAIALFRKYL 241
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| ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 59/171 (34%), Positives = 87/171 (50%)
Query: 43 SSSSETEQHYMPSIEST--LVIRQLP-SQG-LSFKLWPAATTLVTLLD--QFCXXXXXXX 96
++ ++E +++ IE V+R S+G + +W AA L L+ QFC
Sbjct: 2 AADEDSEDYFVREIEKNDGSVLRMYQCSKGDVGCVVWDAAIVLSKYLETEQFCSIGSGVS 61
Query: 97 XXXXXXXGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISL 156
NI+ELG+GTGLVG+ AA+ LGA VT+TDL + LQ N+ N LI
Sbjct: 62 MWSSK------NIIELGAGTGLVGLVAAS-LGANVTLTDLEDLQPLLQLNIKKNQQLIHT 114
Query: 157 RGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRL 207
GSV L+WG A +D IL +D +Y++ +PL+ TL+L
Sbjct: 115 --GSVTAKVLKWG-ANVDDFLPHPH---YILMADCIYYEQSVEPLVETLKL 159
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| UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 56/172 (32%), Positives = 86/172 (50%)
Query: 39 DTLTSSSSETEQHYMPSIE----STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCXXXXX 94
DTL SS + + ++ +E + L ++Q S G+ +W AA L L+
Sbjct: 3 DTLESSLEDPLRSFVRVLEKRDGTVLRLQQYSSGGVGCVVWDAAIVLSKYLE------TP 56
Query: 95 XXXXXXXXXGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLI 154
+ ++LELGSGTG VG+ AA LGA V VTDL + L+ N++ N L+
Sbjct: 57 EFSGDGAHALSRRSVLELGSGTGAVGLMAAT-LGADVVVTDLEELQDLLKMNINMNKHLV 115
Query: 155 SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLR 206
+ GSV L+WGE ++ D IL +D +Y++ +PLL TL+
Sbjct: 116 T---GSVQAKVLKWGE----EIEGFPSPPDFILMADCIYYEESLEPLLKTLK 160
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.8__832__AT5G49560.1 | annotation not avaliable (270 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 282 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 5e-34 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 4e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-05 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 2e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 7e-04 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 9e-04 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 5e-34
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 57 ESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGT 116
L I + G+ +W AA L L+ + N N LN+LELGSGT
Sbjct: 4 SPELKIEEDTGNGIGGHVWDAAVVLSKYLEMKITPGGN--------NLSGLNVLELGSGT 55
Query: 117 GLVGMAAAAIL-GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175
GLVG+A A +L GA VT+TDL + ++ N++ N V L WGE +D
Sbjct: 56 GLVGIAVALLLPGASVTITDLEEAIELMKKNIELNG-----LSSKVTAKVLDWGEDLPDD 110
Query: 176 VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDS 235
V D+ILA+D VY++ F L TL L E ++A+ +R + +
Sbjct: 111 V-FDPHPVDLILAADCVYNEDSFPLLEKTLNDLLG---KETV-----ILVAYKKRREAEK 161
Query: 236 VFFKKAKK 243
FFK ++
Sbjct: 162 RFFKLLEE 169
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Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAP 165
+L+LG+G+GLV +AAA A+V D+ P + ++ N AN I H
Sbjct: 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILF----THADL 136
Query: 166 LRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212
+ G FD++LA D+ Y+ D L+ +G
Sbjct: 137 I--GSP---------PAFDLLLAGDLFYNHTEADRLIPWKDRLAEAG 172
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Length = 218 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-05
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 108 NILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLR 167
+L+LG GTG + +A A+ GA+VT D+ V L+ A A L +V V
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVA--LELARKAAAA---LLADNVEVLKGD 55
Query: 168 WGEAEANDVAVVGREFDVILASDVVYHDHLFDP 200
E FDVI+ SD H + D
Sbjct: 56 AEELPPEA----DESFDVII-SDPPLHHLVEDL 83
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 97 LASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PH----VLTNLQFNVDANA 151
LA + + +LE+G+G+G+V + AA G KV D+ P+ N + N N
Sbjct: 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAK-NGKKVVGVDINPYAVECAKCNAKLNNIRNN 73
Query: 152 GLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVIL 187
G+ +R P R G +FDVIL
Sbjct: 74 GVEVIRSDL--FEPFR------------GDKFDVIL 95
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Length = 188 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 7e-04
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 108 NILELGSGTGLVGMAAA-AILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAP 165
+L++G GTG + + A GA+VT DL P +L + N G
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALG-----------PR 52
Query: 166 LRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212
+ + + +A D + FD + LL L L G
Sbjct: 53 ITFVQGDAPDALDLLEGFDAVFIGGGG---GDLLELLDALASLLKPG 96
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Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 9e-04
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 110 LELGSGTGLVGMAAAAIL-GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRW 168
L++G GTG + A L G + T D+ + A L +L +R
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDI-----SPAALEAAAERLAALGLL--DAVRVRL 53
Query: 169 GEAEANDVAVVGREFDVILASDVVYHDHLFDP 200
+A D+ FDV++AS+V+ HL DP
Sbjct: 54 DVLDAIDLD--PGSFDVVVASNVL--HHLADP 81
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.95 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.84 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.69 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.67 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.66 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.65 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.64 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.61 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.6 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.59 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.52 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.51 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.5 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.48 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.47 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.45 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.45 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.45 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.44 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.42 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.41 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.4 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.39 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.39 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.38 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.38 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.38 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.37 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.37 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.36 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.35 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.34 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.33 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.33 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.32 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.32 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.32 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.31 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.31 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.28 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.28 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.26 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.25 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.22 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.22 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.22 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.22 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.21 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.2 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.2 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.18 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.18 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.17 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.15 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.15 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.15 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.15 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.15 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.14 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.14 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.13 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.12 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.12 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.12 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.12 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.11 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.1 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.1 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.09 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.09 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.09 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.08 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.07 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.06 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.06 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.06 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.06 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.06 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.05 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.05 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.05 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.04 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.04 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.03 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.03 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.03 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.02 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.02 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.02 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.02 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.01 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.01 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.01 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.99 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.99 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.99 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.99 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.97 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.97 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.97 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.96 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.96 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.95 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.95 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.94 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.94 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.94 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.92 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.92 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.92 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.91 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.91 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.9 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.89 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.88 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.88 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.87 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.87 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.86 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.86 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.86 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.85 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.85 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.83 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.83 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.82 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.82 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.81 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.8 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.79 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.78 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 98.77 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.77 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.76 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.76 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.75 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.75 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.74 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.72 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.7 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.7 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.67 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.67 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.67 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.67 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.66 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.66 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.66 | |
| PLN02476 | 278 | O-methyltransferase | 98.65 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.65 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.61 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.59 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.58 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.57 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.55 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.51 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.49 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.48 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.46 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.46 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.44 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.44 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.43 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.4 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.4 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.39 | |
| PLN02366 | 308 | spermidine synthase | 98.38 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.37 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.37 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.34 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.33 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.32 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.3 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.26 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.15 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.15 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.14 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.12 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.12 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.1 | |
| PLN02823 | 336 | spermine synthase | 98.1 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.09 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.08 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.07 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.05 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.02 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.0 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.97 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.94 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.94 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.9 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.89 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.86 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.84 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.83 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.82 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.73 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.72 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.72 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.67 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.65 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.65 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.63 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.63 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.62 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.62 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.59 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.55 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.55 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.54 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.53 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.52 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.52 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.48 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 97.47 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.4 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.4 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.4 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.36 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.33 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.31 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.29 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.28 | |
| PHA01634 | 156 | hypothetical protein | 97.25 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.21 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.19 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.17 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.16 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.09 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.06 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.04 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.0 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.96 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.93 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 96.92 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.87 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.8 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.79 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.62 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.61 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.19 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.18 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.95 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.93 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 95.93 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 95.92 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.8 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.77 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 95.73 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.59 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.59 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.41 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.32 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.3 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.99 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.89 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 94.72 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.21 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.1 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.02 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.01 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 93.95 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.71 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 93.66 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.56 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 93.43 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.43 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.11 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 92.75 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.35 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.12 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 91.76 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 91.32 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.0 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 90.86 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 90.5 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 90.48 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 89.97 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.74 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 89.7 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 89.44 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 89.2 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 88.48 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 88.22 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 88.12 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 87.93 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 87.92 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 87.89 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 87.25 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 87.24 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 86.89 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 86.81 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 86.69 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 86.14 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 86.05 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 85.47 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 85.31 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 84.95 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 84.65 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 84.18 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 83.9 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 83.64 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 83.62 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 82.89 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 82.12 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 81.85 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 81.63 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 81.53 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 81.17 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 80.29 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 80.13 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=198.75 Aligned_cols=169 Identities=39% Similarity=0.568 Sum_probs=99.1
Q ss_pred CceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEe
Q 023457 57 ESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAI-LGAKVTVTD 135 (282)
Q Consensus 57 ~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~-~~~~V~~tD 135 (282)
+..+.|+|....++|.++|+++.+|++||..+..... .....++++|||||||+|++|+.+++. .+++|++||
T Consensus 3 ~~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~------~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD 76 (173)
T PF10294_consen 3 NKTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEF------NPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTD 76 (173)
T ss_dssp --------------------HHHHHHHHHHH-------------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE
T ss_pred ccccccccccccCCcEEEechHHHHHHHHHHhccccc------chhhcCCceEEEECCccchhHHHHHhccCCceEEEec
Confidence 3567888888889999999999999999988642100 004567999999999999999999966 368999999
Q ss_pred hHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCC
Q 023457 136 LPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPE 215 (282)
Q Consensus 136 ~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~ 215 (282)
+++++++++.|++.|+.. ...++.+..++|++...... ....+||+||++||+|..+.++.|++++.++++++
T Consensus 77 ~~~~l~~l~~Ni~~N~~~---~~~~v~v~~L~Wg~~~~~~~-~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~--- 149 (173)
T PF10294_consen 77 YNEVLELLRRNIELNGSL---LDGRVSVRPLDWGDELDSDL-LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPN--- 149 (173)
T ss_dssp -S-HHHHHHHHHHTT-----------EEEE--TTS-HHHHH-HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT----
T ss_pred cchhhHHHHHHHHhcccc---ccccccCcEEEecCcccccc-cccccCCEEEEecccchHHHHHHHHHHHHHHhCCC---
Confidence 944999999999998731 25689999999998321111 12458999999999999999999999999999998
Q ss_pred CCCceEEEEEEeecCcccHHHHHHHHhh
Q 023457 216 PKKKKMNFVMAHLRRWKKDSVFFKKAKK 243 (282)
Q Consensus 216 ~~~g~~~il~~~~~~~~~~~~f~~~~~~ 243 (282)
+. ++++. .+|......|++.+++
T Consensus 150 ---~~-vl~~~-~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 150 ---GK-VLLAY-KRRRKSEQEFFDRLKK 172 (173)
T ss_dssp ---TT-EEEEE-E-S-TGGCHHHHHH--
T ss_pred ---CE-EEEEe-CEecHHHHHHHHHhhh
Confidence 45 55554 4556667889998764
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-20 Score=157.16 Aligned_cols=197 Identities=44% Similarity=0.545 Sum_probs=152.6
Q ss_pred cceeeecCCCCceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCC--CCCcEEEeCCCCCHHHHHHH
Q 023457 47 ETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNG--CQLNILELGSGTGLVGMAAA 124 (282)
Q Consensus 47 ~~~~~~~~~~~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~--~g~~VLELGcGtG~~si~la 124 (282)
..+.+..+...+.+.+...+..+....+|+++..++.++..+... ++...+...+ +..+|||||+|||++|+.+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~---~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa 105 (248)
T KOG2793|consen 29 EIQLGGIKSEESKTVIESGLEQGISAYLWSCATTLAQPLWERRRD---SELTATLIGFKTKYINVLELGSGTGLVGILAA 105 (248)
T ss_pred eeeeccccccceeeecccccccceeeEEeehhhccchhhhhhhcC---chhhhccccccccceeEEEecCCccHHHHHHH
Confidence 566677777777777777788899999999999999999776642 2222222212 46679999999999999999
Q ss_pred HHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC-ccEEEEcCccCCCCCHHHHHH
Q 023457 125 AILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE-FDVILASDVVYHDHLFDPLLV 203 (282)
Q Consensus 125 ~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~-fD~Ii~sd~ly~~~~~~~ll~ 203 (282)
..+++.|+.+|.+..+..++.|...|..........+.+..|+|+.. .+.....+. ||+|+++||+|+++.++.++.
T Consensus 106 ~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~--~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~ 183 (248)
T KOG2793|consen 106 LLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNA--LDVSFRLPNPFDLILASDVVYEEESFEGLVK 183 (248)
T ss_pred HHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCc--ccHhhccCCcccEEEEeeeeecCCcchhHHH
Confidence 88899999999988888888887777765544566899999999994 333333444 999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCceEEEEEEeecCc---ccHHHHHHHHhhcCceEEEcccCC
Q 023457 204 TLRLFLNSGEPEPKKKKMNFVMAHLRRW---KKDSVFFKKAKKLFDVETIHADLP 255 (282)
Q Consensus 204 ~l~~ll~~g~~~~~~g~~~il~~~~~~~---~~~~~f~~~~~~~f~ve~v~~~~~ 255 (282)
++..++..+ + .++++++.|+. ..+..|+......|++........
T Consensus 184 tla~ll~~~------~-~i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 231 (248)
T KOG2793|consen 184 TLAFLLAKD------G-TIFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQESFFKD 231 (248)
T ss_pred HHHHHHhcC------C-eEEEEEecccchHHHHHHHHhhhhhccceeeeEeccCc
Confidence 999999988 4 78888888874 335555555556788877665544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-18 Score=134.50 Aligned_cols=153 Identities=24% Similarity=0.280 Sum_probs=117.0
Q ss_pred ceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCC-CCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 72 FKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSG-TGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 72 ~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcG-tG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..+||+..+|+.++.+.. ....|++|||||.| ||+.|+++|.... ..|..||. ...++++++-+.
T Consensus 8 vciwpseeala~~~l~~~------------n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~ 75 (201)
T KOG3201|consen 8 VCIWPSEEALAWTILRDP------------NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRN 75 (201)
T ss_pred EEecccHHHHHHHHHhch------------hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHh
Confidence 479999999999997765 34679999999999 7999999985443 78999999 999999999888
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
.|... ...++.+....|.. .. ......+||+|+++||+|..+..+.|+++|+.+|+|. |+ .+++++
T Consensus 76 ~n~~s---~~tsc~vlrw~~~~--aq-sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~------g~-Al~fsP- 141 (201)
T KOG3201|consen 76 SNMAS---SLTSCCVLRWLIWG--AQ-SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPS------GR-ALLFSP- 141 (201)
T ss_pred ccccc---ccceehhhHHHHhh--hH-HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcc------cc-eeEecC-
Confidence 87421 12334333333332 21 1122458999999999999999999999999999998 56 454544
Q ss_pred cCcccHHHHHHHHhh-cCceEEE
Q 023457 229 RRWKKDSVFFKKAKK-LFDVETI 250 (282)
Q Consensus 229 ~~~~~~~~f~~~~~~-~f~ve~v 250 (282)
||-.+.+.|.+.+.. ||.++.-
T Consensus 142 RRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 142 RRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred cccchHHHHHHHHHhceeEEEec
Confidence 555678999998874 8888643
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=131.03 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=131.3
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGL 153 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~ 153 (282)
--+..|+.|... ...++|||||||+|.+++++|++.. ++|+++|+ +.+.+.+++|++.|..
T Consensus 31 ~DaiLL~~~~~~----------------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l- 93 (248)
T COG4123 31 TDAILLAAFAPV----------------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL- 93 (248)
T ss_pred cHHHHHHhhccc----------------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-
Confidence 357888888822 2377999999999999999997755 89999999 9999999999999984
Q ss_pred cccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC------------------CHHHHHHHHHHHHhcCCCC
Q 023457 154 ISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH------------------LFDPLLVTLRLFLNSGEPE 215 (282)
Q Consensus 154 ~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~------------------~~~~ll~~l~~ll~~g~~~ 215 (282)
..++.+.+.|..+.... ....+||+|+|+.+.|... .++.+++...++|+++
T Consensus 94 ----~~ri~v~~~Di~~~~~~---~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~--- 163 (248)
T COG4123 94 ----EERIQVIEADIKEFLKA---LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG--- 163 (248)
T ss_pred ----hhceeEehhhHHHhhhc---ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC---
Confidence 77899988777663211 1134699999999988532 3889999999999999
Q ss_pred CCCceEEEEEEeecCcccHHHHHHHHhh-cCceEEEcccCCCCCcccceEEEEEeeecC
Q 023457 216 PKKKKMNFVMAHLRRWKKDSVFFKKAKK-LFDVETIHADLPCNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 216 ~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f~ve~v~~~~~~~~~~~~~~v~~~~~~~~ 273 (282)
|.++++.. .+....+++.+.+ +|...++..-.+..+......+.+..|..+
T Consensus 164 ---G~l~~V~r----~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 164 ---GRLAFVHR----PERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred ---CEEEEEec----HHHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 77777643 3445778888876 899999999999888888888888877654
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=124.52 Aligned_cols=132 Identities=22% Similarity=0.264 Sum_probs=97.0
Q ss_pred EEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCC-EEEEEeh-Hh
Q 023457 61 VIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGA-KVTVTDL-PH 138 (282)
Q Consensus 61 ~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~-~V~~tD~-~~ 138 (282)
++...++.--...+-.++.+|++++.... +++|||||||+|.+++.+++..+. +|+++|+ +.
T Consensus 3 ~~~~~~gvFs~~~~d~~t~lL~~~l~~~~----------------~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~ 66 (170)
T PF05175_consen 3 EFITHPGVFSPPRLDAGTRLLLDNLPKHK----------------GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPD 66 (170)
T ss_dssp EEEEETTSTTTTSHHHHHHHHHHHHHHHT----------------TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHH
T ss_pred EEEECCCeeCCCCCCHHHHHHHHHHhhcc----------------CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHH
Confidence 34444432223456778999999996642 669999999999999999976654 7999999 99
Q ss_pred HHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCC-----HHHHHHHHHHHHhcCC
Q 023457 139 VLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHL-----FDPLLVTLRLFLNSGE 213 (282)
Q Consensus 139 ~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~-----~~~ll~~l~~ll~~g~ 213 (282)
+++.+++|+..|+. .. +.+...|+.+ ... ..+||+|+++.+++.... ...+++...++|+++
T Consensus 67 a~~~a~~n~~~n~~-----~~-v~~~~~d~~~----~~~--~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~- 133 (170)
T PF05175_consen 67 ALELAKRNAERNGL-----EN-VEVVQSDLFE----ALP--DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG- 133 (170)
T ss_dssp HHHHHHHHHHHTTC-----TT-EEEEESSTTT----TCC--TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE-
T ss_pred HHHHHHHHHHhcCc-----cc-cccccccccc----ccc--ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC-
Confidence 99999999999985 22 6666655544 111 478999999999875543 678899999999998
Q ss_pred CCCCCceEEEEEE
Q 023457 214 PEPKKKKMNFVMA 226 (282)
Q Consensus 214 ~~~~~g~~~il~~ 226 (282)
|.++++..
T Consensus 134 -----G~l~lv~~ 141 (170)
T PF05175_consen 134 -----GRLFLVIN 141 (170)
T ss_dssp -----EEEEEEEE
T ss_pred -----CEEEEEee
Confidence 66656544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=127.81 Aligned_cols=130 Identities=25% Similarity=0.323 Sum_probs=106.8
Q ss_pred ccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 70 LSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 70 ~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
++...|.++++||+|+..+.. ..+|++|||+|+|+|++++++++.+++.|+++|+ +..+..++.|++
T Consensus 56 fwa~~WagG~~lAR~i~~~Pe------------tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ 123 (218)
T COG3897 56 FWAFAWAGGQVLARYIDDHPE------------TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAA 123 (218)
T ss_pred HHHHHHhhhHHHHHHHhcCcc------------ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchh
Confidence 467999999999999988773 4689999999999999999999888889999999 999999999999
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
.|+. .+.+...+... .+..||+|+++|++|+......++.+..++...| ..+++..+.
T Consensus 124 angv-------~i~~~~~d~~g--------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g-------~~vlvgdp~ 181 (218)
T COG3897 124 ANGV-------SILFTHADLIG--------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAG-------AAVLVGDPG 181 (218)
T ss_pred hccc-------eeEEeeccccC--------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCC-------CEEEEeCCC
Confidence 9985 33344332221 2578999999999999999999999777777665 667777776
Q ss_pred cCccc
Q 023457 229 RRWKK 233 (282)
Q Consensus 229 ~~~~~ 233 (282)
|.+-.
T Consensus 182 R~~lp 186 (218)
T COG3897 182 RAYLP 186 (218)
T ss_pred CCCCc
Confidence 76654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=132.93 Aligned_cols=154 Identities=20% Similarity=0.341 Sum_probs=111.8
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.|.-.++..+|+...+++....++|..+. .+|++|||+|||||.+++++++.++.+|+++|+
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~--------------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiD 193 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV--------------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDID 193 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS--------------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESS
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhc--------------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCC
Confidence 45667777888888889999999999998864 347899999999999999999766679999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEP 216 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~ 216 (282)
+.+++.++.|+..|+. ..++.+. . ..+. ...+||+|+++-.. ..+..+...+.++++|+
T Consensus 194 p~Av~~a~~N~~~N~~-----~~~~~v~-----~--~~~~--~~~~~dlvvANI~~---~vL~~l~~~~~~~l~~~---- 252 (295)
T PF06325_consen 194 PLAVEAARENAELNGV-----EDRIEVS-----L--SEDL--VEGKFDLVVANILA---DVLLELAPDIASLLKPG---- 252 (295)
T ss_dssp CHHHHHHHHHHHHTT------TTCEEES-----C--TSCT--CCS-EEEEEEES-H---HHHHHHHHHCHHHEEEE----
T ss_pred HHHHHHHHHHHHHcCC-----CeeEEEE-----E--eccc--ccccCCEEEECCCH---HHHHHHHHHHHHhhCCC----
Confidence 9999999999999996 3344432 1 1111 13789999997332 33456777788889987
Q ss_pred CCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 217 KKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 217 ~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
+.++++.-... ....+.+.++++|.+....
T Consensus 253 ---G~lIlSGIl~~--~~~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 253 ---GYLILSGILEE--QEDEVIEAYKQGFELVEER 282 (295)
T ss_dssp ---EEEEEEEEEGG--GHHHHHHHHHTTEEEEEEE
T ss_pred ---CEEEEccccHH--HHHHHHHHHHCCCEEEEEE
Confidence 55666655443 3455666666688776554
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=126.44 Aligned_cols=190 Identities=22% Similarity=0.269 Sum_probs=127.4
Q ss_pred CCccccccCCCCCCCccceeeecCCCCceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEE
Q 023457 31 LPMAMLTQDTLTSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNIL 110 (282)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VL 110 (282)
...||.+.++.+............ ...+.+...++.--..++..++.+|.+-|.. ..+.+||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~----------------~~~~~vl 163 (300)
T COG2813 102 MRLHYYSENPPPFADEPEWKVYLL--GHELTFKTLPGVFSRDKLDKGSRLLLETLPP----------------DLGGKVL 163 (300)
T ss_pred ceeEeecCCCCcccchhhhhhhhc--cCceEEEeCCCCCcCCCcChHHHHHHHhCCc----------------cCCCcEE
Confidence 345555554444444433333333 3445555545433356788899998887732 2244999
Q ss_pred EeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEE
Q 023457 111 ELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILA 188 (282)
Q Consensus 111 ELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~ 188 (282)
|||||.|.+|+.+++..+ .+++.+|. ..+++.+++|+..|+.. ...+..-+. ......+||.||+
T Consensus 164 DlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~------~~~v~~s~~-------~~~v~~kfd~Iis 230 (300)
T COG2813 164 DLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE------NTEVWASNL-------YEPVEGKFDLIIS 230 (300)
T ss_pred EeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC------ccEEEEecc-------cccccccccEEEe
Confidence 999999999999997775 79999999 89999999999999852 212222111 1122348999999
Q ss_pred cCccCCCCC-----HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcC-ceEEEcccCCCCCcccc
Q 023457 189 SDVVYHDHL-----FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLF-DVETIHADLPCNGARVG 262 (282)
Q Consensus 189 sd~ly~~~~-----~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f-~ve~v~~~~~~~~~~~~ 262 (282)
+.+++.-.. .+.++....+.|++| |.+.|+.. +. ..+...+++-| +++.+. ...+
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~g------GeL~iVan---~~---l~y~~~L~~~Fg~v~~la-------~~~g 291 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPG------GELWIVAN---RH---LPYEKKLKELFGNVEVLA-------KNGG 291 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccC------CEEEEEEc---CC---CChHHHHHHhcCCEEEEE-------eCCC
Confidence 999996433 347899999999998 67777665 22 22334455556 488888 4467
Q ss_pred eEEEEEee
Q 023457 263 VVVYRMTG 270 (282)
Q Consensus 263 ~~v~~~~~ 270 (282)
+.||+..|
T Consensus 292 f~Vl~a~k 299 (300)
T COG2813 292 FKVLRAKK 299 (300)
T ss_pred EEEEEEec
Confidence 88888765
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=126.18 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=117.7
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.|+..++..+|+...+.+....++|++.. .+|++|||+|||+|.++|++++.++++|+++|+
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~--------------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiD 194 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLL--------------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDID 194 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhh--------------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCC
Confidence 46778888888888889999999999998865 358999999999999999998766678999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEP 216 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~ 216 (282)
|.+++.++.|+..|+... .+... +.. ..... ...+||+|+++=.- .-+..|...+.++++||
T Consensus 195 p~AV~aa~eNa~~N~v~~-----~~~~~---~~~--~~~~~-~~~~~DvIVANILA---~vl~~La~~~~~~lkpg---- 256 (300)
T COG2264 195 PQAVEAARENARLNGVEL-----LVQAK---GFL--LLEVP-ENGPFDVIVANILA---EVLVELAPDIKRLLKPG---- 256 (300)
T ss_pred HHHHHHHHHHHHHcCCch-----hhhcc---ccc--chhhc-ccCcccEEEehhhH---HHHHHHHHHHHHHcCCC----
Confidence 999999999999998631 11111 111 11111 13589999997422 34568888899999998
Q ss_pred CCceEEEEEEeecCcccHHHHHHHH-hhcCceEEEccc
Q 023457 217 KKKKMNFVMAHLRRWKKDSVFFKKA-KKLFDVETIHAD 253 (282)
Q Consensus 217 ~~g~~~il~~~~~~~~~~~~f~~~~-~~~f~ve~v~~~ 253 (282)
+.++++.-... ......+.+ +++|.+..+..+
T Consensus 257 ---g~lIlSGIl~~--q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 257 ---GRLILSGILED--QAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ---ceEEEEeehHh--HHHHHHHHHHhCCCeEeEEEec
Confidence 55666664444 246666666 469998876643
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-15 Score=124.95 Aligned_cols=109 Identities=24% Similarity=0.323 Sum_probs=89.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|++|||+|||-|.++..+| +.|+.|+++|. +.+++.++.....++.. ++|.....+++....++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha~e~gv~------------i~y~~~~~edl~~~~~~ 124 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALESGVN------------IDYRQATVEDLASAGGQ 124 (243)
T ss_pred CCCCeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHHhhhhcccc------------ccchhhhHHHHHhcCCC
Confidence 569999999999999999998 56799999999 99999999988887642 34444334455544579
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK 232 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~ 232 (282)
||+|+|.+|+.|.++.+.+++++.++++|+ +.++++...|+..
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~-------G~lf~STinrt~k 167 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKLVKPG-------GILFLSTINRTLK 167 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHHcCCC-------cEEEEeccccCHH
Confidence 999999999999999999999999999998 6667676555543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=125.99 Aligned_cols=178 Identities=20% Similarity=0.210 Sum_probs=115.8
Q ss_pred eeeecCCCCceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC
Q 023457 49 EQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG 128 (282)
Q Consensus 49 ~~~~~~~~~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~ 128 (282)
..|.+++ ..+.+...++.--+.++..++.+|.++|.. ..+.+|||||||+|.+++.+++..+
T Consensus 190 ~~~~~~~--~~~~~~~~~gVFs~~~LD~GtrllL~~lp~----------------~~~~~VLDLGCGtGvi~i~la~~~P 251 (378)
T PRK15001 190 VSWKLEG--TDWTIHNHANVFSRTGLDIGARFFMQHLPE----------------NLEGEIVDLGCGNGVIGLTLLDKNP 251 (378)
T ss_pred eEEEEcC--ceEEEEecCCccCCCCcChHHHHHHHhCCc----------------ccCCeEEEEeccccHHHHHHHHhCC
Confidence 3344443 334444333322256788899888887722 1245999999999999999987664
Q ss_pred -CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC-----CHHHH
Q 023457 129 -AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH-----LFDPL 201 (282)
Q Consensus 129 -~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~-----~~~~l 201 (282)
.+|+++|. +.+++.++.|++.|+... ..++.+..-|... .+ ...+||+|+++.+++... ....+
T Consensus 252 ~~~V~~vD~S~~Av~~A~~N~~~n~~~~---~~~v~~~~~D~l~----~~--~~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 252 QAKVVFVDESPMAVASSRLNVETNMPEA---LDRCEFMINNALS----GV--EPFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCccc---CceEEEEEccccc----cC--CCCCEEEEEECcCcccCccCCHHHHHHH
Confidence 69999999 899999999999886310 1234443322211 11 134799999998876432 35678
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcC-ceEEEcccCCCCCcccceEEEEEeeec
Q 023457 202 LVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLF-DVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 202 l~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f-~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
++.+.+.|++| |.++++. .+..+ +...+++.| .++.+. ...+++||+..|.+
T Consensus 323 ~~~a~~~LkpG------G~L~iV~--nr~l~----y~~~L~~~fg~~~~va-------~~~kf~vl~a~k~~ 375 (378)
T PRK15001 323 FHHARRCLKIN------GELYIVA--NRHLD----YFHKLKKIFGNCTTIA-------TNNKFVVLKAVKLG 375 (378)
T ss_pred HHHHHHhcccC------CEEEEEE--ecCcC----HHHHHHHHcCCceEEc-------cCCCEEEEEEEeCC
Confidence 88999999998 6666653 23322 223344434 556554 45678899887743
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=119.46 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=111.5
Q ss_pred EEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-H
Q 023457 60 LVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-P 137 (282)
Q Consensus 60 i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~ 137 (282)
+.+...++.-....+..++..|.+.+.. ....+|||||||+|.+++.+++..+ .+|+++|+ +
T Consensus 167 l~i~~~pgvFs~~~lD~gt~lLl~~l~~----------------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~ 230 (342)
T PRK09489 167 LTVKTLPGVFSRDGLDVGSQLLLSTLTP----------------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSA 230 (342)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHhccc----------------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCH
Confidence 4444444333344566777777776632 1234899999999999999986654 58999999 9
Q ss_pred hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC-----CCHHHHHHHHHHHHhcC
Q 023457 138 HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD-----HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 138 ~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~-----~~~~~ll~~l~~ll~~g 212 (282)
.+++.++.|+..|+.. ..+...|... ...++||+|+++.+++.. ...+.+++.+.+.|++|
T Consensus 231 ~Al~~A~~nl~~n~l~-------~~~~~~D~~~-------~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 231 AALESSRATLAANGLE-------GEVFASNVFS-------DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred HHHHHHHHHHHHcCCC-------CEEEEccccc-------ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcC
Confidence 9999999999998741 1222222111 124689999999888752 34578999999999999
Q ss_pred CCCCCCceEEEEEEeecCcccHHHHHHHHhhcC-ceEEEcccCCCCCcccceEEEEEeeecCC
Q 023457 213 EPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLF-DVETIHADLPCNGARVGVVVYRMTGKAKS 274 (282)
Q Consensus 213 ~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f-~ve~v~~~~~~~~~~~~~~v~~~~~~~~~ 274 (282)
|.++++......+ .. .+++.| .++.+. ...++.||+..|.|..
T Consensus 297 ------G~L~iVan~~l~y---~~---~l~~~Fg~~~~la-------~~~~f~v~~a~~~~~~ 340 (342)
T PRK09489 297 ------GELRIVANAFLPY---PD---LLDETFGSHEVLA-------QTGRFKVYRAIMTRQA 340 (342)
T ss_pred ------CEEEEEEeCCCCh---HH---HHHHHcCCeEEEE-------eCCCEEEEEEEccCcC
Confidence 7777765433332 22 223334 456665 3356789998876643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=105.10 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=76.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..++.+++. .+.+|+++|+ +.+++.+++++..++. ..++.+..-|+ . .......+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~-~----~~~~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDA-E----FDPDFLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCC-H----GGTTTSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECcc-c----cCcccCCC
Confidence 3779999999999999999963 5689999999 9999999999965553 56888888666 1 11112457
Q ss_pred ccEEEEcC-ccCC---CCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASD-VVYH---DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd-~ly~---~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.. ++.+ .+....+++.+.++|+||
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhcCCC
Confidence 99999988 3321 245678899999999998
|
... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=107.01 Aligned_cols=125 Identities=25% Similarity=0.316 Sum_probs=90.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.+++.++... .+|+++|+ +.+++.+++|+..++. .+.+...|+.+. ...+|
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~-------~~~~f 83 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNV-------GLDVVMTDLFKG-------VRGKF 83 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEcccccc-------cCCcc
Confidence 36689999999999999998554 59999999 9999999999987653 345555554331 13589
Q ss_pred cEEEEcCccCCCCC---------------------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYHDHL---------------------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~~~~---------------------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
|+|+++.++++... +..+++.+.++|+|| |.++++....++ ...+++.++
T Consensus 84 D~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g------G~~~~~~~~~~~---~~~~~~~l~ 154 (179)
T TIGR00537 84 DVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG------GRVQLIQSSLNG---EPDTFDKLD 154 (179)
T ss_pred cEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC------CEEEEEEeccCC---hHHHHHHHH
Confidence 99999987654321 467889999999998 666555433332 345555554
Q ss_pred -hcCceEEEccc
Q 023457 243 -KLFDVETIHAD 253 (282)
Q Consensus 243 -~~f~ve~v~~~ 253 (282)
.+|.++.+...
T Consensus 155 ~~gf~~~~~~~~ 166 (179)
T TIGR00537 155 ERGFRYEIVAER 166 (179)
T ss_pred hCCCeEEEEEEe
Confidence 58999887743
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-12 Score=115.09 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=108.2
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.+...++..+|+..++.+....++|.... .++++|||+|||+|.+++.+++.++.+|+++|+
T Consensus 126 ~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~--------------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid 191 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD--------------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDID 191 (288)
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHhhc--------------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECC
Confidence 34556666777777778898888888886543 247899999999999999988655569999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEP 216 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~ 216 (282)
+.+++.+++|+..|+. ..++.+...+. ......+||+|+++-+. ..+..++..+.++|+||
T Consensus 192 ~~al~~a~~n~~~n~~-----~~~~~~~~~~~-------~~~~~~~fDlVvan~~~---~~l~~ll~~~~~~Lkpg---- 252 (288)
T TIGR00406 192 PLAVESARKNAELNQV-----SDRLQVKLIYL-------EQPIEGKADVIVANILA---EVIKELYPQFSRLVKPG---- 252 (288)
T ss_pred HHHHHHHHHHHHHcCC-----CcceEEEeccc-------ccccCCCceEEEEecCH---HHHHHHHHHHHHHcCCC----
Confidence 9999999999998874 22333332111 11124689999997442 34567889999999998
Q ss_pred CCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 217 KKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 217 ~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|. ++++.... .....+.+.+++.|++..+.
T Consensus 253 --G~-li~sgi~~--~~~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 253 --GW-LILSGILE--TQAQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred --cE-EEEEeCcH--hHHHHHHHHHHccCceeeEe
Confidence 44 44444322 23455666666557666543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=116.14 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=79.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+|.+|||+|||||.+++.+++..+ .+|+++|+ +.|++.+++++...+. .++.+.. .+.++++..++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~-----~da~~lp~~d~ 115 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQ-----GDAEDLPFPDN 115 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE------BTTB--S-TT
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEE-----cCHHHhcCCCC
Confidence 477999999999999999986544 69999999 9999999999887552 2454444 33555666678
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~ 231 (282)
+||+|+++..+.+..+....++.+.|+|+|| |.++++-......
T Consensus 116 sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG------G~l~ile~~~p~~ 159 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFPDRERALREMYRVLKPG------GRLVILEFSKPRN 159 (233)
T ss_dssp -EEEEEEES-GGG-SSHHHHHHHHHHHEEEE------EEEEEEEEEB-SS
T ss_pred ceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC------eEEEEeeccCCCC
Confidence 9999999999999999999999999999999 7777766554443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-13 Score=118.15 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=81.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.|++|||+|||+|+++..+| +.+++|+++|. +++++.++.....+... ...+ ...+.+.+.+ .+...+.|
T Consensus 89 ~g~~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h~~~dP~~----~~~~-~y~l~~~~~~---~E~~~~~f 159 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEHKKMDPVL----EGAI-AYRLEYEDTD---VEGLTGKF 159 (282)
T ss_pred CCceEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHhhhcCchh----cccc-ceeeehhhcc---hhhccccc
Confidence 47899999999999999998 66799999999 99999998875544332 1111 1222333221 22234679
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR 230 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~ 230 (282)
|.|+|++++.|..++..++..+.++|+|+ |. +|+..-.|.
T Consensus 160 DaVvcsevleHV~dp~~~l~~l~~~lkP~------G~-lfittinrt 199 (282)
T KOG1270|consen 160 DAVVCSEVLEHVKDPQEFLNCLSALLKPN------GR-LFITTINRT 199 (282)
T ss_pred ceeeeHHHHHHHhCHHHHHHHHHHHhCCC------Cc-eEeeehhhh
Confidence 99999999999999999999999999998 45 455544343
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=117.01 Aligned_cols=98 Identities=22% Similarity=0.282 Sum_probs=78.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.++..++ ..+++|+++|. +.+++.++.+...+.. ..++.+...+ ..+++....+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~d-----ae~l~~~~~~ 198 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTT-----AEKLADEGRK 198 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecC-----HHHhhhccCC
Confidence 467899999999999999987 45789999999 9999999987665432 2244444432 2233333568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.++++|..+...+++.+.++|+||
T Consensus 199 FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 199 FDAVLSLEVIEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred CCEEEEhhHHHhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-13 Score=113.70 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=88.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
+|.+|||+|||||-.++.+++..+ ++|+++|+ +.||+.+++.+...+. . .+ .|...+.+.++..+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-----~-~i-----~fv~~dAe~LPf~D~s 119 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-----Q-NV-----EFVVGDAENLPFPDNS 119 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-----c-ce-----EEEEechhhCCCCCCc
Confidence 589999999999999999986654 79999999 9999999998875432 1 13 3334446678878899
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR 229 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~ 229 (282)
||+|.++..+.+..+.+.+|+.+.|+|+|| |+++++--...
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVlKpg------G~~~vle~~~p 160 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVLKPG------GRLLVLEFSKP 160 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhhcCC------eEEEEEEcCCC
Confidence 999999999999999999999999999999 66666554433
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-12 Score=106.39 Aligned_cols=102 Identities=25% Similarity=0.275 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|+. +.+|+++|+ +.+++.+++++..++. .++.+...|+.+ +. ....|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~-----~~-~~~~f 96 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNN-----LT-FDGEY 96 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhh-----CC-cCCCc
Confidence 4679999999999999999854 689999999 9999999998887653 234555544433 11 13579
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++|+.. ....+++.+.++|+|| |.++++.
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg------G~~~~~~ 134 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPG------GYNLIVA 134 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCC------cEEEEEE
Confidence 9999999987643 5789999999999999 6655544
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=104.55 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=81.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|..++.++... +++|+++|+ +.+++.++.++..++. .++.+...|+.+.... + ..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~-~---~~ 72 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQE-L---EE 72 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGC-S---ST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccc-c---CC
Confidence 47799999999999999998433 479999999 9999999999988763 3788888776651110 1 26
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|+++.++++......+++.+.++++++
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLLKPG 103 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999998
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=116.10 Aligned_cols=106 Identities=17% Similarity=0.111 Sum_probs=86.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++...+.+|+++|+ +.+++.+++++..++. ..++.+...|..+ ++..++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~-----~~~~~~~ 186 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALN-----QPFEDGQ 186 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCccc-----CCCCCCC
Confidence 457899999999999999998777789999999 9999999998887663 3456666655433 2333578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++..+++|..+...+++.+.++|+|| |.+++..
T Consensus 187 FD~V~s~~~~~h~~d~~~~l~e~~rvLkpG------G~lvi~~ 223 (340)
T PLN02244 187 FDLVWSMESGEHMPDKRKFVQELARVAAPG------GRIIIVT 223 (340)
T ss_pred ccEEEECCchhccCCHHHHHHHHHHHcCCC------cEEEEEE
Confidence 999999999999999999999999999999 6666543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=107.10 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=103.7
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.+...++..+|...++.+..+.+++.... .++++|||+|||+|.+++.+++.+..+|+++|+
T Consensus 86 ~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~--------------~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis 151 (250)
T PRK00517 86 DEINIELDPGMAFGTGTHPTTRLCLEALEKLV--------------LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDID 151 (250)
T ss_pred CeEEEEECCCCccCCCCCHHHHHHHHHHHhhc--------------CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECC
Confidence 34555666666667678999988888886532 247899999999999999887554457999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEP 216 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~ 216 (282)
+.+++.+++|+..|+. ...+.+. .. ..+||+|+++-.. ..+..++..+.++|+||
T Consensus 152 ~~~l~~A~~n~~~~~~-----~~~~~~~-----~~--------~~~fD~Vvani~~---~~~~~l~~~~~~~Lkpg---- 206 (250)
T PRK00517 152 PQAVEAARENAELNGV-----ELNVYLP-----QG--------DLKADVIVANILA---NPLLELAPDLARLLKPG---- 206 (250)
T ss_pred HHHHHHHHHHHHHcCC-----CceEEEc-----cC--------CCCcCEEEEcCcH---HHHHHHHHHHHHhcCCC----
Confidence 9999999999998874 1222211 10 1269999986332 34567888999999998
Q ss_pred CCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEcc
Q 023457 217 KKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIHA 252 (282)
Q Consensus 217 ~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~ 252 (282)
|. +++..... .....+...+. .+|.+..+..
T Consensus 207 --G~-lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 207 --GR-LILSGILE--EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred --cE-EEEEECcH--hhHHHHHHHHHHCCCEEEEEEE
Confidence 44 44443222 23345555554 4788776553
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-11 Score=101.23 Aligned_cols=129 Identities=22% Similarity=0.204 Sum_probs=90.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||||||+|..++.++... +.+|+++|. +.+++.+++|++.++. .++.+...+..+ +.. ..+|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~-----~~~-~~~f 113 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEE-----FGQ-EEKF 113 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhh-----CCC-CCCc
Confidence 7899999999999999988544 479999999 9999999999998874 236666655433 222 4689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEE-cccCCCCCcc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETI-HADLPCNGAR 260 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v-~~~~~~~~~~ 260 (282)
|+|++.. ...++.+++.+.++|+|| |.++++.. .. ....+.+..+ .|+.++.+ ....+.-++.
T Consensus 114 DlV~~~~----~~~~~~~l~~~~~~LkpG------G~lv~~~~--~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (187)
T PRK00107 114 DVVTSRA----VASLSDLVELCLPLLKPG------GRFLALKG--RD--PEEEIAELPKALGGKVEEVIELTLPGLDGE 178 (187)
T ss_pred cEEEEcc----ccCHHHHHHHHHHhcCCC------eEEEEEeC--CC--hHHHHHHHHHhcCceEeeeEEEecCCCCCc
Confidence 9999864 246789999999999998 56555532 22 3344554444 38877543 3444433333
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=111.58 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=91.4
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
...+|++|||||||.|.+++.+|+..+.+|+++++ ++..+.+++.+..-++ ..++++.-.||.+. .
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd~--------~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRDF--------E 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEecccccc--------c
Confidence 45679999999999999999999888999999999 8999999999988775 45788888888772 3
Q ss_pred CCccEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 181 REFDVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
++||-|++..++.|... ++.+++.+.++|+|+ |.+++-+..
T Consensus 136 e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~------G~~llh~I~ 178 (283)
T COG2230 136 EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG------GRMLLHSIT 178 (283)
T ss_pred cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC------ceEEEEEec
Confidence 45999999999998665 999999999999999 666554443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=100.83 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=98.4
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
-++-+.+|++++.. .++++|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|+..++.
T Consensus 8 p~~~~~~l~~~~~~----------------~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 8 PAEDSFLLAENAVD----------------KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNI 70 (188)
T ss_pred cchhHHHHHHhhhc----------------cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCC
Confidence 35566777777632 24779999999999999999865 799999999 9999999999988764
Q ss_pred ccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC---------------------CCHHHHHHHHHHHHhc
Q 023457 153 LISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD---------------------HLFDPLLVTLRLFLNS 211 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~---------------------~~~~~ll~~l~~ll~~ 211 (282)
. ...+.+...|+.+ .+ ....||+|+++.+++.. ..+..+++.+.++|++
T Consensus 71 ~----~~~~~~~~~d~~~----~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~ 140 (188)
T PRK14968 71 R----NNGVEVIRSDLFE----PF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP 140 (188)
T ss_pred C----CcceEEEeccccc----cc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC
Confidence 2 1115555555543 11 12379999998765541 1245688999999999
Q ss_pred CCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEccc
Q 023457 212 GEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIHAD 253 (282)
Q Consensus 212 g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~~ 253 (282)
+ |.++++...... ...+...+. .+|.+..+...
T Consensus 141 g------G~~~~~~~~~~~---~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 141 G------GRILLLQSSLTG---EDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred C------eEEEEEEcccCC---HHHHHHHHHHCCCeeeeeeec
Confidence 8 666665543222 234444444 48887766543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-12 Score=110.54 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=78.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~f 183 (282)
+.+|||+|||+|..++.++. .+.+|+++|+ +.+++.+++++...+. ..++.+...+..+ +. .....|
T Consensus 45 ~~~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~-----l~~~~~~~f 113 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQD-----IAQHLETPV 113 (255)
T ss_pred CCEEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHH-----HhhhcCCCC
Confidence 67999999999999999985 4689999999 9999999999887653 2345555544332 21 225689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++..++++..+...+++.+.++|+||
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCC
Confidence 99999999999889999999999999998
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=95.36 Aligned_cols=89 Identities=27% Similarity=0.349 Sum_probs=71.2
Q ss_pred EEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEE
Q 023457 110 LELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILA 188 (282)
Q Consensus 110 LELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~ 188 (282)
||||||+|..+..+++..+.+|+++|+ +.+++.++++..... +.+...+ ...++..+..||+|++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---------~~~~~~d-----~~~l~~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG---------VSFRQGD-----AEDLPFPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST---------EEEEESB-----TTSSSS-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC---------chheeeh-----HHhCcccccccccccc
Confidence 899999999999998664789999999 899999988765432 3344433 3344555789999999
Q ss_pred cCccCCCCCHHHHHHHHHHHHhcC
Q 023457 189 SDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 189 sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++++.++...+++.+.++|+|+
T Consensus 67 ~~~~~~~~~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 67 NSVLHHLEDPEAALREIYRVLKPG 90 (95)
T ss_dssp ESHGGGSSHHHHHHHHHHHHEEEE
T ss_pred ccceeeccCHHHHHHHHHHHcCcC
Confidence 999999999999999999999998
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=102.70 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=72.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|.+++.++...+ ++|+++|. +.+++.+++|++.++. .++.+...++.+ +. ...+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~-----~~-~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAED-----FQ-HEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhh-----cc-ccCC
Confidence 478999999999999999885553 68999999 8999999999987763 246666665544 11 2468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.. + ..++.+++.+.++|+||
T Consensus 110 fD~I~s~~-~---~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 110 FDVITSRA-L---ASLNVLLELTLNLLKVG 135 (181)
T ss_pred ccEEEehh-h---hCHHHHHHHHHHhcCCC
Confidence 99999854 2 45778889999999998
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=102.33 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+++ .+.+|+++|+ +.+++.+++++..++. .+.....+... .. ...+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~-----~~-~~~~f 95 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINA-----AA-LNEDY 95 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchh-----cc-ccCCC
Confidence 367999999999999999985 4689999999 9999999988876653 23333333322 11 13579
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++++. .....+++.+.++|+|| |.++++.
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~lli~~ 133 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPG------GYNLIVA 133 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCC------cEEEEEE
Confidence 999999988764 45788999999999998 5645543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-11 Score=108.73 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=77.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||+|..++.++..++..|+++|. +.++...+......+ ...++.+...++.+ ++. ...
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-----~~~~i~~~~~d~e~-----lp~-~~~ 189 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-----NDQRAHLLPLGIEQ-----LPA-LKA 189 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC-----CCCCeEEEeCCHHH-----CCC-cCC
Confidence 458899999999999999998766678999999 777654433222111 02245665544433 232 568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNF 223 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~i 223 (282)
||+|++..++||..+...+++.+.+.|+|| |.+++
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG------G~lvl 224 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPG------GELVL 224 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCC------cEEEE
Confidence 999999999999999999999999999998 66654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=107.54 Aligned_cols=100 Identities=24% Similarity=0.299 Sum_probs=78.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..++.++. .+.+|+++|+ +.+++.+++++..++. ++.+...|.... . ..+.||
T Consensus 121 ~~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~~~---~---~~~~fD 186 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDINSA---S---IQEEYD 186 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechhcc---c---ccCCcc
Confidence 55999999999999999985 4689999999 9999999999887653 344444443331 1 146899
Q ss_pred EEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 185 VILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 185 ~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+|+++.++++. +....+++.+.++|+|| |.++++.
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg------G~~l~v~ 223 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPG------GYNLIVC 223 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCC------cEEEEEE
Confidence 99999988764 46788999999999998 5655554
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=107.89 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=80.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+|.+|||||||.|.+++.+|+..+++|+++.+ ++-.+.+++.+...++ .+++.+...||.+ + ..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~~~-----~---~~ 126 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDYRD-----L---PG 126 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-GGG-----------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeeccc-----c---CC
Confidence 3569999999999999999999888899999999 8899999999988775 5678887777655 1 34
Q ss_pred CccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 182 EFDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+||.|++..++.|. ..++.+++.+.++|+|| |.+++-
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg------G~~~lq 165 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG------GRLVLQ 165 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT------EEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC------cEEEEE
Confidence 89999999999986 57899999999999999 665543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-11 Score=102.58 Aligned_cols=140 Identities=22% Similarity=0.261 Sum_probs=94.3
Q ss_pred hHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc
Q 023457 77 AATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS 155 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~ 155 (282)
.+..|++++..... .++.+|||+|||+|.+++.+++....+|+++|+ +.+++.+++|+..++.
T Consensus 21 ds~~l~~~l~~~~~-------------~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--- 84 (223)
T PRK14967 21 DTQLLADALAAEGL-------------GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--- 84 (223)
T ss_pred cHHHHHHHHHhccc-------------CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---
Confidence 45677777755331 246799999999999999998654359999999 9999999999987653
Q ss_pred cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC---------------------CHHHHHHHHHHHHhcCCC
Q 023457 156 LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH---------------------LFDPLLVTLRLFLNSGEP 214 (282)
Q Consensus 156 ~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~---------------------~~~~ll~~l~~ll~~g~~ 214 (282)
++.+...|+.. .+ ...+||+|+++.+.+... .+..+++.+.++|++|
T Consensus 85 ----~~~~~~~d~~~----~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-- 152 (223)
T PRK14967 85 ----DVDVRRGDWAR----AV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-- 152 (223)
T ss_pred ----eeEEEECchhh----hc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC--
Confidence 34455544433 11 246899999986543221 1456788889999998
Q ss_pred CCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 215 EPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 215 ~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
|.++++..... ....++..++ .+|.++.+.
T Consensus 153 ----G~l~~~~~~~~---~~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 153 ----GSLLLVQSELS---GVERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred ----cEEEEEEeccc---CHHHHHHHHHHCCCCeEEEE
Confidence 66555433322 2345555554 477776543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=108.17 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=80.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||||..+..++...+ ++|+++|+ ++|++.++++....... ...++.+...+.. .++..++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~---~~~~i~~~~~d~~-----~lp~~~~ 144 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS---CYKNIEWIEGDAT-----DLPFDDC 144 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc---cCCCeEEEEcccc-----cCCCCCC
Confidence 477999999999999998886543 59999999 99999998765321100 1224555554433 3344457
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||+|+++.++++..+...+++.+.++|+|| |.++++.
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG------G~l~i~d 182 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPG------SRVSILD 182 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcC------cEEEEEE
Confidence 8999999999999999999999999999999 6666653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=110.24 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=84.6
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
-|.+......++.... ..++++|||||||+|..++.++..++..|+++|. +.++..++.......
T Consensus 103 e~~s~~~~~~~l~~l~-------------~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~- 168 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLS-------------PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD- 168 (314)
T ss_pred HHHHHHHHHHHHHhcC-------------CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-
Confidence 5766666555554322 3458899999999999998887665568999999 777765433221111
Q ss_pred ccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 153 LISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
...++.+..++..+ ++. ...||+|+++.++||..+...+++.+++.|+|| |.+++.
T Consensus 169 ----~~~~v~~~~~~ie~-----lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG------G~Lvle 224 (314)
T TIGR00452 169 ----NDKRAILEPLGIEQ-----LHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK------GELVLE 224 (314)
T ss_pred ----cCCCeEEEECCHHH-----CCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC------CEEEEE
Confidence 12244555444333 221 347999999999999999999999999999999 666653
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=103.00 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=81.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|..+..++...+ .+|+++|+ +.+++.++.++..++. .++.+...|... ++...
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~-----~~~~~ 112 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAME-----LPFDD 112 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhc-----CCCCC
Confidence 3478999999999999999986643 69999999 9999999999876542 345555444332 22224
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.+||+|+++.++.+.+....+++.+.++|+|| |.++++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g------G~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG------GKVVCLE 151 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcC------eEEEEEE
Confidence 68999999999988889999999999999998 5655443
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-11 Score=105.77 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=79.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++...+.+|+++|+ +.+++.++++... ..++.+...|... .+....+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~-----~~~~~~~ 117 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILK-----KDFPENT 117 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCccc-----CCCCCCC
Confidence 357899999999999999887666789999999 9999999886543 2245555544432 2223568
Q ss_pred ccEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++.+++++.. +...+++.+.++|+|| |.+++.-
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG------G~lvi~d 156 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPN------GILLITD 156 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC------cEEEEEE
Confidence 99999999887754 7889999999999999 5655543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-11 Score=106.84 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=90.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..++.+++.. +.+|+++|. +.+++.++++...+ ++.+...|.. +++...+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~---------~i~~i~gD~e-----~lp~~~~s 178 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------ECKIIEGDAE-----DLPFPTDY 178 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc---------CCeEEeccHH-----hCCCCCCc
Confidence 46799999999999998887654 469999999 99999998875421 2333333322 22323568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-------------cccHHHHHHHHhh-cCceE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-------------WKKDSVFFKKAKK-LFDVE 248 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-------------~~~~~~f~~~~~~-~f~ve 248 (282)
||+|+++.++++..+.+.+++.+.++|+|| |.++++...... .....++.+.+++ ||+..
T Consensus 179 FDvVIs~~~L~~~~d~~~~L~e~~rvLkPG------G~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIG------GKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred eeEEEEcChhhhCCCHHHHHHHHHHhcCCC------cEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 999999999998888999999999999999 676654322111 1123555555554 89766
Q ss_pred EEccc
Q 023457 249 TIHAD 253 (282)
Q Consensus 249 ~v~~~ 253 (282)
++...
T Consensus 253 ~i~~i 257 (340)
T PLN02490 253 KLKRI 257 (340)
T ss_pred EEEEc
Confidence 55543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=102.40 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=82.3
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
++|||||||+|..+..++...+ .+|+++|+ +.+++.+++++...+. ..++.+...|+... + ...+||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~-----~-~~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKD-----P-FPDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccC-----C-CCCCCC
Confidence 4799999999999999987663 79999999 9999999999887663 45677777665441 1 135799
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+|++..++++..+...+++.+.++|+|| |.+++.
T Consensus 70 ~I~~~~~l~~~~~~~~~l~~~~~~Lkpg------G~l~i~ 103 (224)
T smart00828 70 LVFGFEVIHHIKDKMDLFSNISRHLKDG------GHLVLA 103 (224)
T ss_pred EeehHHHHHhCCCHHHHHHHHHHHcCCC------CEEEEE
Confidence 9999999999999999999999999998 565554
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=97.94 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+..|++|+|||||||.+++.++..++..|+++|+ +++++.++.|+..+ .+++.+..-|..+ ..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~--------~~ 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSD--------FR 106 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhh--------cC
Confidence 35679999999999999999998666689999999 99999999999873 3456666544433 35
Q ss_pred CCccEEEEcCccCCC---CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh--hcCceEEE---cc
Q 023457 181 REFDVILASDVVYHD---HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK--KLFDVETI---HA 252 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~---~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~--~~f~ve~v---~~ 252 (282)
.++|.+|++.++-.. .+. .++....++. . ++...|+.. ...|..... .|+.+..+ ..
T Consensus 107 ~~~dtvimNPPFG~~~rhaDr-~Fl~~Ale~s----------~-vVYsiH~a~---~~~f~~~~~~~~G~~v~~~~~~~~ 171 (198)
T COG2263 107 GKFDTVIMNPPFGSQRRHADR-PFLLKALEIS----------D-VVYSIHKAG---SRDFVEKFAADLGGTVTHIERARF 171 (198)
T ss_pred CccceEEECCCCccccccCCH-HHHHHHHHhh----------h-eEEEeeccc---cHHHHHHHHHhcCCeEEEEEEEEE
Confidence 789999999887532 222 2333332222 2 333334333 455555443 36655433 11
Q ss_pred c-------CCCCCcccceEEEEEeee
Q 023457 253 D-------LPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 253 ~-------~~~~~~~~~~~v~~~~~~ 271 (282)
. +..+..+.++.+|++.|.
T Consensus 172 ~iP~~y~fH~k~~~~I~v~i~r~~k~ 197 (198)
T COG2263 172 PIPRTYPFHRKRVRRIEVDIFRFEKG 197 (198)
T ss_pred ecCccCchhhheeeeeeEEEEEEEec
Confidence 1 122444567788888774
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=96.52 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=88.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|.+++.+++..+ .+|+++|. +.+++.+++|+..++. ..++.+...+..+ .+....
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~----~l~~~~ 109 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPE----ILFTIN 109 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhh----hHhhcC
Confidence 4578999999999999999986543 68999999 9999999999988763 2345555444322 122223
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
..||.|++.. ....+..+++.+.++|+|| |.+++... ...........++ .+|.++.+.
T Consensus 110 ~~~D~V~~~~---~~~~~~~~l~~~~~~Lkpg------G~lv~~~~---~~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 110 EKFDRIFIGG---GSEKLKEIISASWEIIKKG------GRIVIDAI---LLETVNNALSALENIGFNLEITE 169 (198)
T ss_pred CCCCEEEECC---CcccHHHHHHHHHHHcCCC------cEEEEEee---cHHHHHHHHHHHHHcCCCeEEEE
Confidence 6799999853 2346788999999999998 56554332 3334455555553 478766544
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=98.56 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=79.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||+|||+|..+..++..++ .+|+++|+ +.+++.+++++..++. ..++.+...++.+. .....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~-----~~~~~ 120 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEAL-----PFPDN 120 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccC-----CCCCC
Confidence 467999999999999999987775 89999999 9999999998865432 23456665555441 12246
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|+++.++++......+++.+.++|+++
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~g 151 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPG 151 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhccCC
Confidence 8999999999999899999999999999998
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=109.78 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=79.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++...+.+|+++|+ +.+++.+++|.... ..++.+...|+... +....+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~-----~~~~~~ 332 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKK-----TYPDNS 332 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccC-----CCCCCC
Confidence 357799999999999999998766789999999 89999998876522 23566666665541 222467
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++..+++|..+...+++.+.++|+||
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPG 362 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-11 Score=104.03 Aligned_cols=104 Identities=22% Similarity=0.256 Sum_probs=81.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..++.+++..+ .+|+++|+ +.+++.+++|...++. .++.+...++.. ++...
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~-----l~~~~ 144 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEA-----LPVAD 144 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhh-----CCCCC
Confidence 3588999999999999888776554 47999999 9999999999887653 245555444432 22234
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
..||+|+++.++++..+...+++.+.++|+|| |.+++.
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG------G~l~i~ 182 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPG------GRFAIS 182 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCC------cEEEEE
Confidence 68999999999988888999999999999998 665553
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-10 Score=86.07 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=71.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..++.+++..+ .+|+++|+ +.+++.+++|+..++. .++.+...+... .......+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~ 88 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPE----ALEDSLPE 88 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccc----cChhhcCC
Confidence 467999999999999999987654 69999999 9999999999987653 234444433221 01112358
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.... .....+++.+.++|+++
T Consensus 89 ~D~v~~~~~~---~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 89 PDRVFIGGSG---GLLQEILEAIWRRLRPG 115 (124)
T ss_pred CCEEEECCcc---hhHHHHHHHHHHHcCCC
Confidence 9999986543 35678999999999998
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=100.45 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..+..++... +.+|+++|+ +.+++.++++.. ++.+...|... +. ...
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~-----~~-~~~ 92 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIAS-----WQ-PPQ 92 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhc-----cC-CCC
Confidence 357899999999999999998665 479999999 999999887532 23333323222 11 135
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+||+|+++.++++..+...+++.+.++|+|| |.+++.
T Consensus 93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg------G~~~~~ 129 (258)
T PRK01683 93 ALDLIFANASLQWLPDHLELFPRLVSLLAPG------GVLAVQ 129 (258)
T ss_pred CccEEEEccChhhCCCHHHHHHHHHHhcCCC------cEEEEE
Confidence 8999999999999889999999999999998 565554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=101.44 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||||||+|.++..++. .+.+|+++|+ +.+++.++.+... ..+...|+. .++.....|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~-----~~~~~~~~f 104 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIE-----SLPLATATF 104 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcc-----cCcCCCCcE
Confidence 467899999999999988874 4689999999 9999988875421 122222222 222335689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|+++.++++..+...++..+.++|+||
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~g 133 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPG 133 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCC
Confidence 99999999998889999999999999998
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-12 Score=95.16 Aligned_cols=94 Identities=26% Similarity=0.356 Sum_probs=59.5
Q ss_pred EEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEE
Q 023457 110 LELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVIL 187 (282)
Q Consensus 110 LELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii 187 (282)
||||||+|..+..++... ..+|+++|+ +.+++.+++++..... .....+.+...+..... ...+||+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--------DNFERLRFDVLDLFDYD-PPESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----------EEEEE--SSS---CC-C----SEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------cceeEEEeecCChhhcc-cccccceeh
Confidence 799999999999988664 479999999 8999888777766441 12223333331111110 124899999
Q ss_pred EcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 188 ASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 188 ~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
++.++++.++...+++.+.++|+||
T Consensus 72 ~~~vl~~l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 72 ASNVLHHLEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp EE-TTS--S-HHHHHHHHTTT-TSS
T ss_pred hhhhHhhhhhHHHHHHHHHHHcCCC
Confidence 9999999999999999999999998
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=102.40 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|.++..++... +.+|+++|+ +.|++.++++ .+.+...|.. .+. ...
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~-----~~~-~~~ 88 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVR-----DWK-PKP 88 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChh-----hCC-CCC
Confidence 357899999999999999998664 479999999 9999888652 1233333322 221 246
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+||+|+++.++++..+...+++.+.++|+|| |.+++.
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg------G~l~~~ 125 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPG------SWIAVQ 125 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCC------cEEEEE
Confidence 8999999999999999999999999999999 666554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-10 Score=96.19 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=76.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||+|..+..+++ .+.+|+++|. +.++..++.++..++. .+.+...++.+. ......+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~ 114 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGL-------KIDYRQTTAEEL----AAEHPGQ 114 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCC-------ceEEEecCHHHh----hhhcCCC
Confidence 4588999999999999998875 4688999999 8999999988876542 334444333321 1112468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++......+++.+.++|+++
T Consensus 115 fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred ccEEEEhhHhhccCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-11 Score=90.55 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=79.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
|.+|||+|||+|...+.+++.+..+++++|+ +.+++.++.|+..++. ..++.+..-|+... . ......+||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~--~-~~~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDL--P-EPLPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHH--H-HTCTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhc--h-hhccCceeE
Confidence 4589999999999999998665589999999 9999999999998764 45677777655431 1 012357899
Q ss_pred EEEEcCccCCC--------CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 185 VILASDVVYHD--------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 185 ~Ii~sd~ly~~--------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+|+++.+.... .....+++.+.++|+++ |.++++.
T Consensus 73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g------G~~~~~~ 115 (117)
T PF13659_consen 73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG------GVLVFIT 115 (117)
T ss_dssp EEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred EEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC------eEEEEEe
Confidence 99998777642 13578899999999998 6666554
|
... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=92.58 Aligned_cols=97 Identities=28% Similarity=0.343 Sum_probs=72.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||+|..+..++ ..+.+|+++|+ +.+++. .+ +.....+ ..........
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~g~D~~~~~~~~------~~----------~~~~~~~-----~~~~~~~~~~ 78 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA-KRGFEVTGVDISPQMIEK------RN----------VVFDNFD-----AQDPPFPDGS 78 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH-HTTSEEEEEESSHHHHHH------TT----------SEEEEEE-----CHTHHCHSSS
T ss_pred CCCCEEEEEcCCCCHHHHHHH-HhCCEEEEEECCHHHHhh------hh----------hhhhhhh-----hhhhhccccc
Confidence 457899999999999999886 45679999999 888777 11 1111111 1112223679
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR 229 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~ 229 (282)
||+|++++++++..+...+++.+.++|+|| +.+++....+
T Consensus 79 fD~i~~~~~l~~~~d~~~~l~~l~~~Lkpg-------G~l~~~~~~~ 118 (161)
T PF13489_consen 79 FDLIICNDVLEHLPDPEEFLKELSRLLKPG-------GYLVISDPNR 118 (161)
T ss_dssp EEEEEEESSGGGSSHHHHHHHHHHHCEEEE-------EEEEEEEEBT
T ss_pred hhhHhhHHHHhhcccHHHHHHHHHHhcCCC-------CEEEEEEcCC
Confidence 999999999999999999999999999998 4455555444
|
... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=93.75 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=83.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
-.++||+|||.|.++..+|.++ .+++++|+ +.+++.+++.+.. ..+|.+...+..+. .+.++||
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~------~P~~~FD 108 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEF------WPEGRFD 108 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---------SS-EE
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCC------CCCCCee
Confidence 4589999999999999998554 79999999 9999999987764 34677777655441 2367999
Q ss_pred EEEEcCccCCCCC---HHHHHHHHHHHHhcCCCCCCCceEEEEEEee----cCcc---cHHHHHHHHhhcC-ceEEEccc
Q 023457 185 VILASDVVYHDHL---FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL----RRWK---KDSVFFKKAKKLF-DVETIHAD 253 (282)
Q Consensus 185 ~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~----~~~~---~~~~f~~~~~~~f-~ve~v~~~ 253 (282)
+|+.+.++|+... +..++..+...|+|| |. ++++... ++|+ ..+...+.+.+.| +|+++.-.
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pg------G~-LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~ 181 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPG------GH-LVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECR 181 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEE------EE-EEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCC------CE-EEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEc
Confidence 9999999998765 456778888889998 44 4444321 1222 2345555555544 67766644
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=93.05 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||+|||+|..++.++...+ .+|+++|. +.|++.+.+++... .++.....|... +........
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~~D~~~--~~~~~~l~~ 140 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------KNIIPILADARK--PERYAHVVE 140 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEECCCCC--cchhhhccc
Confidence 4578999999999999999986653 68999999 99999887776532 133333322221 100111235
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc----cH---HHHHHHHh-hcCceEEEccc
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK----KD---SVFFKKAK-KLFDVETIHAD 253 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~----~~---~~f~~~~~-~~f~ve~v~~~ 253 (282)
.||+|++.-. .+.....+++.+.++|+|| |.+++... .+..+ .. ....+.++ .||++.....-
T Consensus 141 ~~D~i~~d~~--~p~~~~~~L~~~~r~LKpG------G~lvI~v~-~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 141 KVDVIYQDVA--QPNQAEIAIDNAEFFLKDG------GYLLLAIK-ARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred cCCEEEECCC--ChhHHHHHHHHHHHhcCCC------cEEEEEEe-cccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 6999996311 1222345689999999999 67666432 12211 11 12233333 48988776654
Q ss_pred CCC
Q 023457 254 LPC 256 (282)
Q Consensus 254 ~~~ 256 (282)
.+.
T Consensus 212 ~p~ 214 (226)
T PRK04266 212 EPY 214 (226)
T ss_pred CCC
Confidence 333
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=91.62 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=81.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|.+++.+++..+ .+|+++|. +.+++.+++|+..++. .++.+...+... .....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-------~~~~~ 97 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-------ELPGK 97 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-------hcCcC
Confidence 477999999999999999987654 69999999 9999999999987763 234444422211 11357
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCc
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFD 246 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ 246 (282)
||+|+++... ..+..+++.+.++|++| |.+++.... ......+...++ .+|.
T Consensus 98 ~D~v~~~~~~---~~~~~~l~~~~~~Lk~g------G~lv~~~~~---~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 98 ADAIFIGGSG---GNLTAIIDWSLAHLHPG------GRLVLTFIL---LENLHSALAHLEKCGVS 150 (187)
T ss_pred CCEEEECCCc---cCHHHHHHHHHHhcCCC------eEEEEEEec---HhhHHHHHHHHHHCCCC
Confidence 9999987543 35678899999999998 554442211 223445555554 3663
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=94.49 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=80.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|..+..++... .++|+++|+ +.+++.++++.... ..++.+...+... .+...
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~-----~~~~~ 85 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADG-----LPFPD 85 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEeccccc-----CCCCC
Confidence 457899999999999999998665 369999999 89999998873321 2345555544433 12224
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
..||+|++..++.+..+...+++.+.++|+|| |.+++..
T Consensus 86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g------G~l~~~~ 124 (241)
T PRK08317 86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPG------GRVVVLD 124 (241)
T ss_pred CCceEEEEechhhccCCHHHHHHHHHHHhcCC------cEEEEEe
Confidence 68999999999999899999999999999998 5655543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=94.04 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.++||||||.|..++.+| ..|-.|+++|. +..++.+++.+...++ .+.....|..... ....
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~~~~------~~~~ 94 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLNDFD------FPEE 94 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-------TTT
T ss_pred cCCCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecchhcc------ccCC
Confidence 357799999999999999998 56799999999 8899998887776553 4666666665521 1467
Q ss_pred ccEEEEcCccC--CCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVY--HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.-+++ +.+..+.+++.+...++||
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 99999876655 4667889999999999998
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-10 Score=94.89 Aligned_cols=125 Identities=10% Similarity=-0.054 Sum_probs=85.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~ 180 (282)
.+.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++++..++. .++.+...++. ..+. ...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~----~~l~~~~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAV----EVLLDMFPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHH----HHHHHHcCc
Confidence 577999999999999999986654 68999999 9999999999987652 34666655441 1222 224
Q ss_pred CCccEEEEcCccCCCC--------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceE
Q 023457 181 REFDVILASDVVYHDH--------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVE 248 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve 248 (282)
..||+|+++.+..+.. ....+++.+.++|+|+ |.+++.. . ........++.++ .+|.++
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg------G~l~i~~-~--~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG------GEIHFAT-D--WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC------CEEEEEc-C--CHHHHHHHHHHHHhCccccc
Confidence 6799999864332111 2578999999999998 5554433 2 2222344555554 466655
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-10 Score=96.34 Aligned_cols=88 Identities=11% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||||..+..++...+.+|+++|+ ++|++.++.+. .....+ ...++..+++||
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d-----~~~lp~~d~sfD 112 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGS-----FEALPFRDKSFD 112 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEec-----hhhCCCCCCCEE
Confidence 6699999999999999998654679999999 99999887531 011212 223344467899
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+|+++.++++..+.+.+++.+.++|+|.
T Consensus 113 ~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 113 VVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999985
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=99.18 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=70.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+.+|++|||||||.|..+..++.++++.|+++|. ...+-..+ +...-. .....+..+..+ .++++. .+
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~--~i~~~l-----g~~~~~~~lplg---vE~Lp~-~~ 181 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFE--AIKHFL-----GQDPPVFELPLG---VEDLPN-LG 181 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHH--HHHHHh-----CCCccEEEcCcc---hhhccc-cC
Confidence 5679999999999999999998887789999998 54322211 111110 011122222111 223444 57
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|++..|+||..+.-..+..++..|++|
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence 8999999999999999999999999999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-09 Score=88.75 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|..++.++... +.+|+++|+ +.+++.+++|+..++. .++.+...+..+ .+......
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~----~~~~~~~~ 109 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPE----CLAQLAPA 109 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHH----HHhhCCCC
Confidence 47799999999999999987554 379999999 9999999999987763 245555433221 11112234
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+|.|+... ...+..+++.+.++|+|| |.+++..
T Consensus 110 ~d~v~~~~----~~~~~~~l~~~~~~Lkpg------G~li~~~ 142 (196)
T PRK07402 110 PDRVCIEG----GRPIKEILQAVWQYLKPG------GRLVATA 142 (196)
T ss_pred CCEEEEEC----CcCHHHHHHHHHHhcCCC------eEEEEEe
Confidence 67765521 245688999999999998 5655544
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=89.02 Aligned_cols=125 Identities=12% Similarity=0.048 Sum_probs=90.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
..+|.+++|+|||||.+++.+|..++ .+|+++|. +++++.+++|++..+. +++.+..-+- +..+.. .
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv~g~A----p~~L~~-~ 100 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVVEGDA----PEALPD-L 100 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEEeccc----hHhhcC-C
Confidence 45688999999999999999984444 69999999 9999999999998773 4566655221 222222 2
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcC-ceEEEc
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLF-DVETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f-~ve~v~ 251 (282)
.+||.|+.... ..++.+++++...|++| |++++-+... +.....++.++ .+| ++.++.
T Consensus 101 ~~~daiFIGGg----~~i~~ile~~~~~l~~g------grlV~naitl---E~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 101 PSPDAIFIGGG----GNIEEILEAAWERLKPG------GRLVANAITL---ETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CCCCEEEECCC----CCHHHHHHHHHHHcCcC------CeEEEEeecH---HHHHHHHHHHHHcCCceEEEEE
Confidence 37999998755 57889999999999999 7877766543 34444455444 366 555443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-10 Score=93.97 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||||||+|.+++.++...+++|+++|. +.+++.+++|++.++. .++.+..-|+.. .+......|
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~----~l~~~~~~f 122 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALS----FLAQPGTPH 122 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHH----HHhhcCCCc
Confidence 36799999999999999765566689999999 9999999999998873 246666655433 121123469
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHH--HhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLF--LNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~l--l~~g 212 (282)
|+|++..+ |.....+.+++.|... +.++
T Consensus 123 DlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~ 152 (199)
T PRK10909 123 NVVFVDPP-FRKGLLEETINLLEDNGWLADE 152 (199)
T ss_pred eEEEECCC-CCCChHHHHHHHHHHCCCcCCC
Confidence 99999766 6666677777777653 5555
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=107.70 Aligned_cols=131 Identities=19% Similarity=0.138 Sum_probs=91.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++++|||||||||..++.++..++.+|+++|+ +.+++.+++|+..|+.. ..++.+...|..+ .+.....+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~----~l~~~~~~f 609 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLA----WLKEAREQF 609 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHH----HHHHcCCCc
Confidence 47899999999999999998654568999999 99999999999999852 1356666655433 111124689
Q ss_pred cEEEEcCccCCC-----------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH-hhcCceEEEc
Q 023457 184 DVILASDVVYHD-----------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA-KKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~-----------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~-~~~f~ve~v~ 251 (282)
|+||+..+-+.. ..+..++..+.++|++| |. ++++......... ...+ +.+|.++.+.
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g------G~-l~~~~~~~~~~~~---~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG------GT-LYFSNNKRGFKMD---EEGLAKLGLKAEEIT 679 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC------CE-EEEEeCCccCChh---HHHHHhCCCeEEEEe
Confidence 999997654421 23567888889999998 44 4444433433322 2333 3588888877
Q ss_pred cc
Q 023457 252 AD 253 (282)
Q Consensus 252 ~~ 253 (282)
..
T Consensus 680 ~~ 681 (702)
T PRK11783 680 AK 681 (702)
T ss_pred cC
Confidence 54
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=98.04 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
++.+|||||||+|..++.++.. .+.+|+++|+ +.|++.+++++..++. ..++.+...++.+ ++ .
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~-----~~--~ 123 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRD-----IA--I 123 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhh-----CC--C
Confidence 4679999999999999888753 2479999999 9999999999987653 3356666544333 21 2
Q ss_pred CCccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
..+|+|+++.++++.. ....+++.+.+.|+||
T Consensus 124 ~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 124 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCC
Confidence 4589999988887653 3568999999999998
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-09 Score=92.88 Aligned_cols=92 Identities=26% Similarity=0.338 Sum_probs=70.1
Q ss_pred cEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 108 NILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
+|||||||+|.+++.+|...+ +.|+++|+ +.+++.+++|+..|++ .++.+...+|-.. ..++||+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~~-------~~~~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFEP-------LRGKFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeecccc-------cCCceeE
Confidence 899999999999999997776 59999999 9999999999999984 2344444466551 2348999
Q ss_pred EEEcCccCCCC-------------------------CHHHHHHHHHHHHhcC
Q 023457 186 ILASDVVYHDH-------------------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 186 Ii~sd~ly~~~-------------------------~~~~ll~~l~~ll~~g 212 (282)
|++|.+.=..+ .+..++..+.+.++++
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~ 231 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPG 231 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCC
Confidence 99985532211 2556777777888886
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-10 Score=86.75 Aligned_cols=92 Identities=26% Similarity=0.424 Sum_probs=68.9
Q ss_pred EEEeCCCCCHHHHHHHHHh--C--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 109 ILELGSGTGLVGMAAAAIL--G--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~--~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
|||||||+|.....++... + .+++++|+ +++++.++++....+. ++++...|+.+ ++...++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------~~~~~~~D~~~-----l~~~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------KVRFVQADARD-----LPFSDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------TSEEEESCTTC-----HHHHSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------ceEEEECCHhH-----CcccCCCe
Confidence 7999999999999998664 2 79999999 9999999998876432 45555555433 45557799
Q ss_pred cEEEEcCc-cCC--CCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDV-VYH--DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~-ly~--~~~~~~ll~~l~~ll~~g 212 (282)
|+|+++.. +++ .+....+++.+.++++||
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 99999544 554 346789999999999987
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=94.50 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=72.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+++|||||||+|..+..++..+. .+|+++|+ +.++..++.+.. .++.+...|..+ .+....+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~-----~~~~~~~ 98 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEK-----LPLEDSS 98 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhh-----CCCCCCc
Confidence 357999999999999999986654 57999999 888888776443 133444444333 2223568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++..+...++..+.++|++|
T Consensus 99 fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~ 128 (240)
T TIGR02072 99 FDLIVSNLALQWCDDLSQALSELARVLKPG 128 (240)
T ss_pred eeEEEEhhhhhhccCHHHHHHHHHHHcCCC
Confidence 999999999999989999999999999998
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-09 Score=96.04 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=84.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||||||+|.+++.++... +.+|+++|+ +.+++.+++|+..++. ++.+...||.+.. .+ ...+|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-------rV~fi~gDl~e~~---l~-~~~~F 320 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-------RVEFAHGSWFDTD---MP-SEGKW 320 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------cEEEEEcchhccc---cc-cCCCc
Confidence 5589999999999999988654 479999999 9999999999987652 5677777765421 11 13479
Q ss_pred cEEEEcCccCCCC-------------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHH
Q 023457 184 DVILASDVVYHDH-------------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFF 238 (282)
Q Consensus 184 D~Ii~sd~ly~~~-------------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~ 238 (282)
|+|+++.+..... .+..+++.+.+.|+|+ |.+++.... .......
T Consensus 321 DLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg------G~lilEiG~----~Q~e~V~ 390 (423)
T PRK14966 321 DIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG------GFLLLEHGF----DQGAAVR 390 (423)
T ss_pred cEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC------cEEEEEECc----cHHHHHH
Confidence 9999987632111 1446777777889988 554443322 2223344
Q ss_pred HHHh-hcCceEEEccc
Q 023457 239 KKAK-KLFDVETIHAD 253 (282)
Q Consensus 239 ~~~~-~~f~ve~v~~~ 253 (282)
+.+. .+|....+..+
T Consensus 391 ~ll~~~Gf~~v~v~kD 406 (423)
T PRK14966 391 GVLAENGFSGVETLPD 406 (423)
T ss_pred HHHHHCCCcEEEEEEc
Confidence 4443 47765444433
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=90.66 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=68.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|..+..++...+ ++|+++|+ +.+++.+++|+..++. ..++.+...|..+. ++ ...
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~----~~-~~~ 141 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRG----LE-KHA 141 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccC----Cc-cCC
Confidence 477999999999999988886653 69999999 9999999999988763 23456665444331 11 135
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|++...+.+ +.+.+.+.|++|
T Consensus 142 ~fD~Ii~~~~~~~------~~~~l~~~L~~g 166 (205)
T PRK13944 142 PFDAIIVTAAAST------IPSALVRQLKDG 166 (205)
T ss_pred CccEEEEccCcch------hhHHHHHhcCcC
Confidence 8999999866543 235677889998
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=100.85 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=73.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.+++.+++..+.+|+++|+ +.+++.+++++.. . .+.+...++.. + .++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l-------~v~~~~~D~~~-----l---~~~ 228 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L-------PVEIRLQDYRD-----L---NGQ 228 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C-------eEEEEECchhh-----c---CCC
Confidence 357899999999999999998777789999999 9999999987742 1 24444434332 1 367
Q ss_pred ccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
||+|++..++++.. .++.+++.+.++|+||
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 99999999988753 4678999999999998
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-09 Score=91.89 Aligned_cols=124 Identities=17% Similarity=0.212 Sum_probs=83.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||+|||+|.+++.++...+ .+|+++|+ +.+++.+++|+..|+. .+...|+.+..... ...+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~---------~~~~~D~~~~l~~~---~~~~f 154 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG---------TVHEGDLYDALPTA---LRGRV 154 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---------EEEEeechhhcchh---cCCCE
Confidence 45899999999999999986553 59999999 9999999999987652 34455554311111 13579
Q ss_pred cEEEEcCccCCCC--------------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHH
Q 023457 184 DVILASDVVYHDH--------------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVF 237 (282)
Q Consensus 184 D~Ii~sd~ly~~~--------------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f 237 (282)
|+|+++.+..... .+..+++.+.++|+++ |.+++.... . .....
T Consensus 155 DlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g------G~l~l~~~~-~---~~~~v 224 (251)
T TIGR03704 155 DILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG------GHLLVETSE-R---QAPLA 224 (251)
T ss_pred eEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC------CEEEEEECc-c---hHHHH
Confidence 9999986643211 1347778888999998 565554322 2 23345
Q ss_pred HHHHh-hcCceEEEc
Q 023457 238 FKKAK-KLFDVETIH 251 (282)
Q Consensus 238 ~~~~~-~~f~ve~v~ 251 (282)
...+. .+|....+.
T Consensus 225 ~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 225 VEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHCCCCceeeE
Confidence 55444 478777665
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-10 Score=93.27 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..+..++... +.+|+++|+ +.+++.++++.. .+.+...+..+ +....+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~------~~~~~s 105 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD------PFKDNF 105 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC------CCCCCC
Confidence 46789999999999999987653 579999999 999999987532 12333333222 223568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.+++|.. .+.+.+.+.++.+-.
T Consensus 106 fD~V~~~~vL~hl~-p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 106 FDLVLTKGVLIHIN-PDNLPTAYRELYRCS 134 (204)
T ss_pred EEEEEECChhhhCC-HHHHHHHHHHHHhhc
Confidence 99999999998764 333444444444433
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-10 Score=91.81 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=83.1
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~~fD 184 (282)
..|||+|||||..--..-...+.+|+++|. +.|.+.+.+.+..|.. ..+. ..-... .++++. .+.++|
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~------~~~~--~fvva~--ge~l~~l~d~s~D 147 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP------LQVE--RFVVAD--GENLPQLADGSYD 147 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC------cceE--EEEeec--hhcCcccccCCee
Confidence 368999999999876654334579999999 9999999999888742 2332 112222 223331 367999
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-cccHHHHHHH
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-WKKDSVFFKK 240 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-~~~~~~f~~~ 240 (282)
+|++.-++...++....+..+.++|+|| |++++ .-|.+. +.....++..
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~rlLRpg------G~iif-iEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRRLLRPG------GRIIF-IEHVAGEYGFWNRILQQ 197 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHHhcCCC------cEEEE-EecccccchHHHHHHHH
Confidence 9999999999999999999999999999 56555 445443 3333444443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=94.46 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=74.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
++.+|||||||+|..+..+++.. +.+|+++|+ +.|++.+++++...+. ..++.+...|+.+ ++ .
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~~--~ 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRH-----VE--I 120 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhh-----CC--C
Confidence 46799999999999999888653 478999999 9999999998875432 2356666655543 11 2
Q ss_pred CCccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
..+|+|+++.++++.. ....+++.+.+.|+||
T Consensus 121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 121 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCC
Confidence 3589999988887653 4578999999999998
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=89.28 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=91.7
Q ss_pred Cccceeehh-HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHH
Q 023457 69 GLSFKLWPA-ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 69 g~g~~~W~~-a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~ 144 (282)
++-+++|+- ---||.-|..-.... ...++.+|||||||+|..+..++...+ ..|+++|+ +.+++.+.
T Consensus 104 ~~eyR~w~p~rSKlaa~i~~g~~~l---------~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl 174 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAAAIIGGVANI---------PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT 174 (293)
T ss_pred cceeeeeCCcccHHHHHHHCCccee---------ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH
Confidence 445799982 234444442322211 345688999999999999999997764 68999999 77665544
Q ss_pred HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 145 FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
..+.. ..++....-|... +..+......||+|++.- . .+.+...++.++.++|+++ |.+++
T Consensus 175 ~~ak~--------r~NI~~I~~Da~~--p~~y~~~~~~vDvV~~Dv-a-~pdq~~il~~na~r~LKpG------G~~vI- 235 (293)
T PTZ00146 175 NMAKK--------RPNIVPIIEDARY--PQKYRMLVPMVDVIFADV-A-QPDQARIVALNAQYFLKNG------GHFII- 235 (293)
T ss_pred HHhhh--------cCCCEEEECCccC--hhhhhcccCCCCEEEEeC-C-CcchHHHHHHHHHHhccCC------CEEEE-
Confidence 43322 1123333323222 111222235799998854 2 3455667778899999998 66655
Q ss_pred EEeecCcc----cHHHHH---HHHh-hcCceEEEcccCCC
Q 023457 225 MAHLRRWK----KDSVFF---KKAK-KLFDVETIHADLPC 256 (282)
Q Consensus 225 ~~~~~~~~----~~~~f~---~~~~-~~f~ve~v~~~~~~ 256 (282)
....+... ....|- +.++ .+|++.++..-.+.
T Consensus 236 ~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 236 SIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred EEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 32222221 123332 2333 37987655433333
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=96.50 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=84.4
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..-.++..++.++. ..++.+|||+|||+|..++.++... .++|+++|+ +.+++.+++|+..
T Consensus 234 ~qd~~s~lv~~~l~----------------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 234 IQDESSMLVAPALD----------------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred EEChHHHHHHHHhC----------------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 44556777776662 2347799999999999999998765 479999999 9999999999998
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC----------------------CHHHHHHHHHH
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH----------------------LFDPLLVTLRL 207 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~----------------------~~~~ll~~l~~ 207 (282)
++. ..+.+...|+... .......||+|++....+... ....++..+.+
T Consensus 298 ~g~------~~v~~~~~D~~~~----~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~ 367 (444)
T PRK14902 298 LGL------TNIETKALDARKV----HEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQ 367 (444)
T ss_pred cCC------CeEEEEeCCcccc----cchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 774 2366665554431 011125799999854322110 12457888899
Q ss_pred HHhcCCCCCCCceEEEEEE
Q 023457 208 FLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 208 ll~~g~~~~~~g~~~il~~ 226 (282)
+|+|| |.+++..+
T Consensus 368 ~LkpG------G~lvystc 380 (444)
T PRK14902 368 YLKKG------GILVYSTC 380 (444)
T ss_pred HcCCC------CEEEEEcC
Confidence 99998 67665433
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=96.14 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=105.6
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..-.++..++.++ ...+|.+|||+|||+|..++.++...+ ++|+++|+ +.+++.+++|+..
T Consensus 236 ~qd~~s~l~~~~l----------------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 236 VQDRSAQLVAPLL----------------DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred EECHHHHHHHHHh----------------CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 3455666666655 223578999999999999999986643 68999999 9999999999998
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcC------ccCCCCC----------------HHHHHHHHHH
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASD------VVYHDHL----------------FDPLLVTLRL 207 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd------~ly~~~~----------------~~~ll~~l~~ 207 (282)
++. .++.+...|..... .........||.|++.. ++...++ ...++..+.+
T Consensus 300 ~g~------~~v~~~~~D~~~~~-~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 300 LGL------KSIKILAADSRNLL-ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred cCC------CeEEEEeCChhhcc-cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 874 23555554433210 00001235799999732 2222221 3578889999
Q ss_pred HHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh--cCceEEEcc-cCCCCCcccceEEEEEeee
Q 023457 208 FLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK--LFDVETIHA-DLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 208 ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~--~f~ve~v~~-~~~~~~~~~~~~v~~~~~~ 271 (282)
+++|| |.+++..+.....+........+++ .|+++.... ..|....-.|+.+-+++|+
T Consensus 373 ~lkpg------G~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 373 LLKPG------GTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred hcCCC------CEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeC
Confidence 99998 6777665554333333333333333 565543221 2344334567777777664
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.4e-09 Score=93.76 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=65.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.+++.++. .+.+|+++|+ +.|++.++++........ .....+.+...|+.. ....|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~~--------l~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLES--------LSGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchhh--------cCCCc
Confidence 478999999999999999985 4689999999 999999999887542100 001234444433322 24689
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHH
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLF 208 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~l 208 (282)
|+|++.++++|... ...+++.+.++
T Consensus 214 D~Vv~~~vL~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 214 DTVTCLDVLIHYPQDKADGMIAHLASL 240 (315)
T ss_pred CEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence 99999999876543 33455655543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-09 Score=90.55 Aligned_cols=95 Identities=25% Similarity=0.414 Sum_probs=71.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||+|||+|..++.++...+ .+|+++|+ +.+++.++.|+..++. .++.+...++... + ...+|
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~----~--~~~~f 155 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEP----L--PGGKF 155 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhcc----C--cCCce
Confidence 56899999999999999986653 69999999 9999999999988763 2466666555431 1 14689
Q ss_pred cEEEEcCccCCCCC--------------------------HHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHL--------------------------FDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--------------------------~~~ll~~l~~ll~~g 212 (282)
|+|+++.+...... +..+++.+.++|++|
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g 210 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG 210 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence 99999766442111 246788888999998
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=95.59 Aligned_cols=96 Identities=23% Similarity=0.352 Sum_probs=72.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||+|||+|..++.++... ..+|+++|+ +.+++.+++|+..|+. ..++.+...|+.+ .+ ...+|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~----~~--~~~~f 190 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFA----AL--PGRKY 190 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhh----cc--CCCCc
Confidence 5689999999999999998665 369999999 9999999999998874 3467777766543 11 13479
Q ss_pred cEEEEcCccCCCC-------------------------CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDH-------------------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~-------------------------~~~~ll~~l~~ll~~g 212 (282)
|+|+++.+..... .+..+++.+.++|++|
T Consensus 191 D~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 191 DLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred cEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 9999975532111 1356788888999998
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.1e-09 Score=89.06 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=70.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++|+..++. .++.+...|.... . ...
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~----~-~~~ 144 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQG----W-EPL 144 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccC----C-ccc
Confidence 3578999999999999999986654 36999999 9999999999988763 3456555444331 1 113
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
.+||+|++..... .+...+.+.|++| |.+++.
T Consensus 145 ~~fD~Ii~~~~~~------~~~~~~~~~L~~g------G~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGP------KIPEALIDQLKEG------GILVMP 176 (215)
T ss_pred CCCCEEEEcCCcc------cccHHHHHhcCcC------cEEEEE
Confidence 5799999875442 2345677889998 665554
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=98.86 Aligned_cols=134 Identities=18% Similarity=0.083 Sum_probs=86.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++++|||+|||||..++.++...+.+|+++|. +.+++.+++|+..|+.. ..++.+...|..+.. ..+.....+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l-~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLL-RTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHH-HHHHhcCCCC
Confidence 47899999999999999877544469999999 99999999999999852 135666655443310 0111124579
Q ss_pred cEEEEcCccCCCC---------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-----hcCceEE
Q 023457 184 DVILASDVVYHDH---------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-----KLFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~~~---------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-----~~f~ve~ 249 (282)
|+||+..+.+... .+..++....++|++| +.++++.. ...-....|.+.+. .+-.++.
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g-------G~lv~~sc-s~~~~~~~f~~~v~~aa~~~~~~~~~ 366 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG-------GILLTFSC-SGLMTSDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC-------eEEEEEeC-CCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 9999876655332 3556666778899988 44444432 22223455555443 2345555
Q ss_pred Ec
Q 023457 250 IH 251 (282)
Q Consensus 250 v~ 251 (282)
+.
T Consensus 367 l~ 368 (396)
T PRK15128 367 IE 368 (396)
T ss_pred EE
Confidence 54
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-08 Score=93.89 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=79.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+|.+|||+|||+|..++.++...+ .+|+++|. +.++..+++|+..++. .+.+...|..+ .... ....
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~--~~~~-~~~~ 312 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARD--PAQW-WDGQ 312 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCccc--chhh-cccC
Confidence 3578999999999999999987654 69999999 9999999999998764 23444433322 1000 1135
Q ss_pred CccEEEEcCccCCC------C----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHH
Q 023457 182 EFDVILASDVVYHD------H----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVF 237 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~------~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f 237 (282)
+||.|++..+.... + ....++..+.++|+|| |.+++..+..-..+.....
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG------G~lvystcs~~~~Ene~~v 384 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG------GTLLYATCSILPEENEQQI 384 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC------CEEEEEeCCCChhhCHHHH
Confidence 79999964432210 0 1246888999999999 6776665544333333333
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=87.45 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=79.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||+|||+|..+..++...+ .+++++|+ +.+++.++++... ..++.+...+..+ .+...+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~-----~~~~~~ 105 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEA-----LPFEDN 105 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhc-----CCCCCC
Confidence 578999999999999999987776 49999999 8999999887651 2245555544433 112245
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||+|+++.++++......+++.+.++|+|| |.++++.
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~g------G~l~~~~ 143 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPG------GRLVILE 143 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHcCCC------cEEEEEE
Confidence 7999999999988889999999999999998 5655543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-08 Score=85.91 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=79.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCc-cch--hh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEA-NDV--AV 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~-~~~--~~ 178 (282)
.++.+|||||||||..+..+++..+ .+|+++|+..+ +. ...+.+.+.|+.+... ..+ ..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~------~~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP------IVGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC------CCCcEEEecCCCChHHHHHHHHHh
Confidence 3577999999999999999987654 58999999332 11 1235666666655210 000 11
Q ss_pred cCCCccEEEEcCccCCCCC-----------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCce
Q 023457 179 VGREFDVILASDVVYHDHL-----------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~-----------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~v 247 (282)
....||+|+++.+.+.... ...+++.+.++|+|| |.+++... +......|+..+...|.-
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG------G~~vi~~~---~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG------GSFVVKVF---QGEGFDEYLREIRSLFTK 184 (209)
T ss_pred CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC------CEEEEEEe---cCcCHHHHHHHHHhCceE
Confidence 2468999999765543321 256889999999998 56555332 223567788888777755
Q ss_pred EEEc
Q 023457 248 ETIH 251 (282)
Q Consensus 248 e~v~ 251 (282)
-.+.
T Consensus 185 v~~~ 188 (209)
T PRK11188 185 VKVR 188 (209)
T ss_pred EEEE
Confidence 5444
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=91.48 Aligned_cols=94 Identities=22% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++. .+.+|+++|+ +.++..+++++..+.. ..++.+...++.. . ..+|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~-~~~~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~-----~---~~~f 120 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLS-----L---CGEF 120 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhh-----C---CCCc
Confidence 478999999999999999974 4679999999 9999999998876542 2345555544433 1 2679
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
|+|++++++++.. ....+++.+.++++++
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 9999999987643 4566777777776543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-09 Score=89.09 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..+..++...+ ++|+++|+ +++++.+++|+..++. .++.+...|.... . ...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~----~-~~~ 143 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLG----Y-EEN 143 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccC----C-CcC
Confidence 3578999999999999998886654 69999999 9999999999987663 3455555432221 1 124
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
.+||+|++...+. .+...+.+.|++| |.+++.
T Consensus 144 ~~fD~I~~~~~~~------~~~~~l~~~Lkpg------G~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGP------DIPKPLIEQLKDG------GIMVIP 175 (212)
T ss_pred CCcCEEEECCCcc------cchHHHHHhhCCC------cEEEEE
Confidence 6899999865442 2334667789998 665554
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-08 Score=91.39 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=72.5
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
.+|||+|||+|.+++.++...+ .+|+++|+ +.+++.+++|+..++. ..++.+...||.+. +. ..+||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~----~~--~~~fD 184 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEP----LA--GQKID 184 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhcc----Cc--CCCcc
Confidence 6899999999999999987664 69999999 9999999999998874 33577777666541 11 23799
Q ss_pred EEEEcCccCCC-------------C------------CHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHD-------------H------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~-------------~------------~~~~ll~~l~~ll~~g 212 (282)
+|+++.+.... + .+..++..+.++|++|
T Consensus 185 lIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g 237 (284)
T TIGR00536 185 IIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN 237 (284)
T ss_pred EEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence 99997432211 1 3556788888899998
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-09 Score=89.52 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=67.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++....+. ..++.+...++.. ....|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~--------~~~~f 128 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES--------LLGRF 128 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh--------ccCCc
Confidence 4679999999999999999854 568999999 9999999998876542 2345555544322 24679
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHH
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFL 209 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll 209 (282)
|+|++.+++++.+ ....+++.+.+++
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence 9999999986633 4556666666654
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=95.75 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=84.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|.. +++|+++|. +.+++.+++|+..|+. .++.+...|+.+.. .........|
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l-~~~~~~~~~f 368 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDF-TDQPWALGGF 368 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhh-hhhhhhcCCC
Confidence 4679999999999999999854 589999999 9999999999998874 24777776665421 1111123579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|+|++..+ |.- ....++.+.++ +++ +++++++.......+ .....+.+|+++.+.
T Consensus 369 D~Vi~dPP-r~g--~~~~~~~l~~~-~~~-------~ivyvSCnp~tlaRD--l~~L~~~gY~l~~i~ 423 (443)
T PRK13168 369 DKVLLDPP-RAG--AAEVMQALAKL-GPK-------RIVYVSCNPATLARD--AGVLVEAGYRLKRAG 423 (443)
T ss_pred CEEEECcC-CcC--hHHHHHHHHhc-CCC-------eEEEEEeChHHhhcc--HHHHhhCCcEEEEEE
Confidence 99998544 332 34555666553 444 677777643332222 222335789998775
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=86.25 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=93.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc---------cCCCcEEEEEEEeCCCCcc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS---------LRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~---------~~~~~v~~~~ld~~~~~~~ 174 (282)
++.+||++|||.|..++.+| ..|.+|+++|+ +.+++.+.. .+++... ....++.+..-|..+....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 46799999999999999998 56789999999 888887532 2222100 0123455555444432111
Q ss_pred chhhcCCCccEEEEcCccCC--CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee--cC---c---ccHHHHHHHHhhc
Q 023457 175 DVAVVGREFDVILASDVVYH--DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL--RR---W---KKDSVFFKKAKKL 244 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~--~~---~---~~~~~f~~~~~~~ 244 (282)
....||+|+-.-++.+ .+.....++.+.++|+|| |..+++.... .. + -...++.+.+...
T Consensus 113 ----~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg------G~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~ 182 (218)
T PRK13255 113 ----DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG------CRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGC 182 (218)
T ss_pred ----cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC------CeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCC
Confidence 1257999997766554 345678999999999998 5444433211 11 1 1134455555555
Q ss_pred CceEEEcccCCCC---------CcccceEEEEEeee
Q 023457 245 FDVETIHADLPCN---------GARVGVVVYRMTGK 271 (282)
Q Consensus 245 f~ve~v~~~~~~~---------~~~~~~~v~~~~~~ 271 (282)
|+++.+......+ ....-..+|.++|+
T Consensus 183 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
T PRK13255 183 FEIELLERQDVLEDNPKFVKKGVSRLNEAVYLLERK 218 (218)
T ss_pred ceEEEeeeccccccCchhhhcCcchhheEEEEEEeC
Confidence 8888776543211 12233467777764
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-09 Score=89.89 Aligned_cols=110 Identities=21% Similarity=0.301 Sum_probs=88.7
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC-------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCc
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG-------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEA 173 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~-------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~ 173 (282)
....+.++||++||||-+++.+..... .+|++.|+ ++||...++.....++. .+ ....|...+.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~-----~~---~~~~w~~~dA 168 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK-----AS---SRVEWVEGDA 168 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC-----cC---CceEEEeCCc
Confidence 345689999999999999998875543 58999999 99999998877664431 11 1345666667
Q ss_pred cchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 174 NDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 174 ~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
++++..+..||...++.-+.+..+++..+++..|+|+|| |++.++-
T Consensus 169 E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG------Grf~cLe 214 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG------GRFSCLE 214 (296)
T ss_pred ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC------cEEEEEE
Confidence 788877889999999999999999999999999999999 6665544
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-09 Score=95.11 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=80.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.+++..+ .+++++|.+.+++.+++|+...+. .+++.+...|..+. . .+.+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~---~----~~~~ 216 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----ADRMRGIAVDIYKE---S----YPEA 216 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----cceEEEEecCccCC---C----CCCC
Confidence 467999999999999999987765 689999998899999999988764 45677777665431 1 1347
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|+|+.+.++|+... ...+++.+.+.|+|| |++++.
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pg------G~l~i~ 253 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSG------GRLLIL 253 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCC------CEEEEE
Confidence 99999999886543 467999999999998 666554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=91.02 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=75.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~ 181 (282)
..+.+|||||||+|..+..+++ .+.+|+++|. +.+++.++.++..++. ..+.+...++.+ ... ...
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-----~~~~~~~ 111 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVED-----LAEKGAK 111 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHH-----hhcCCCC
Confidence 3578999999999999998875 4578999999 8999999998876542 124444333322 111 136
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|+++.++++......+++.+.++|+++
T Consensus 112 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 112 SFDVVTCMEVLEHVPDPQAFIRACAQLLKPG 142 (224)
T ss_pred CccEEEehhHHHhCCCHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999998
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-09 Score=91.94 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=73.0
Q ss_pred CCCcEEEeCCCCC-HHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHh-cccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTG-LVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDA-NAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG-~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~-n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.+++|+|||||.| +.++.++... +++++++|. +++++.+++++.. .++ ..++.+...|..+. ...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~-----~~~ 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDV-----TES 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhc-----ccc
Confidence 6789999999966 4455555333 368999999 9999999998864 332 45677777665441 111
Q ss_pred CCCccEEEEcCccCC-CCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYH-DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~-~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|++.-++|. .+....+++.+.+.|+||
T Consensus 193 l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 193 LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred cCCcCEEEEecccccccccHHHHHHHHHHhcCCC
Confidence 368999999944554 378999999999999998
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=86.55 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=93.7
Q ss_pred hHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc
Q 023457 77 AATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS 155 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~ 155 (282)
-...|.+++..... .++.+||++|||.|..++.+| ..|.+|+++|+ +.+++.+.. .++....
T Consensus 19 p~~~l~~~~~~l~~-------------~~~~rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~ 81 (213)
T TIGR03840 19 VNPLLVKHWPALGL-------------PAGARVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIAVEQFFA---ENGLTPT 81 (213)
T ss_pred CCHHHHHHHHhhCC-------------CCCCeEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHHHHHHHH---HcCCCcc
Confidence 34567777754321 236799999999999999998 56789999999 888887533 1221100
Q ss_pred ---------cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC--CCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 156 ---------LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH--DHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 156 ---------~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
....++++...|+.+... ...++||.|+-.-++.+ .+.....++.+.++|+|| |.++++
T Consensus 82 ~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg------G~~ll~ 151 (213)
T TIGR03840 82 VTQQGEFTRYRAGNIEIFCGDFFALTA----ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG------ARQLLI 151 (213)
T ss_pred eeccccceeeecCceEEEEccCCCCCc----ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC------CeEEEE
Confidence 012345555555544211 01257999998766554 334577899999999998 665555
Q ss_pred EEeec--C---c---ccHHHHHHHHhhcCceEEEccc
Q 023457 225 MAHLR--R---W---KKDSVFFKKAKKLFDVETIHAD 253 (282)
Q Consensus 225 ~~~~~--~---~---~~~~~f~~~~~~~f~ve~v~~~ 253 (282)
+.... . . -......+.+...|+++.+...
T Consensus 152 ~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~ 188 (213)
T TIGR03840 152 TLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESR 188 (213)
T ss_pred EEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeec
Confidence 43321 1 1 1134455555557888776644
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=97.04 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+.+++++|||+|||||.+++++|++++.+|+++|.+.+.+.+++.+..|+. .+.+.+..-...+ +..+.+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----~~ii~vi~gkvEd-----i~LP~e 126 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----EDVITVIKGKVED-----IELPVE 126 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----cceEEEeecceEE-----EecCcc
Confidence 457899999999999999999999888999999998888999999999985 4445555433322 222257
Q ss_pred CccEEEEc---CccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILAS---DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~s---d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+.|+|++- .++++...++.++-.=.+.|++|
T Consensus 127 KVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~ 160 (346)
T KOG1499|consen 127 KVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEG 160 (346)
T ss_pred ceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCC
Confidence 89999974 34445556666666667888887
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-09 Score=94.37 Aligned_cols=95 Identities=22% Similarity=0.369 Sum_probs=72.2
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
.+|||+|||+|..++.++...+ .+|+++|+ +.+++.+++|+..++. ..++.+...|+.+ .++ ..+||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~----~l~--~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFA----ALP--GRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhh----hCC--CCCcc
Confidence 6899999999999999986653 69999999 9999999999998774 3457777666543 111 34799
Q ss_pred EEEEcCccCCC-------------------------CCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHD-------------------------HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~-------------------------~~~~~ll~~l~~ll~~g 212 (282)
+|+++.+.... ..+..+++.+.++|+||
T Consensus 204 lIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg 256 (307)
T PRK11805 204 LIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED 256 (307)
T ss_pred EEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence 99997543211 11357788888999998
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.1e-10 Score=93.68 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=84.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~~~ 182 (282)
=+++||||||||+.|..+ +....+.+++|+ .+|++.+.++-.-..+. + .+ ...+. ....+
T Consensus 126 F~~~lDLGCGTGL~G~~l-R~~a~~ltGvDiS~nMl~kA~eKg~YD~L~---------~-----Ae--a~~Fl~~~~~er 188 (287)
T COG4976 126 FRRMLDLGCGTGLTGEAL-RDMADRLTGVDISENMLAKAHEKGLYDTLY---------V-----AE--AVLFLEDLTQER 188 (287)
T ss_pred cceeeecccCcCcccHhH-HHHHhhccCCchhHHHHHHHHhccchHHHH---------H-----HH--HHHHhhhccCCc
Confidence 359999999999999998 467789999999 88998886532211110 0 00 00011 12568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE-----------eecCcccHHHHHH-HHh-hcCceEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA-----------HLRRWKKDSVFFK-KAK-KLFDVET 249 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~-----------~~~~~~~~~~f~~-~~~-~~f~ve~ 249 (282)
||+|.++||+-+...++.++.....+|++| |-+.|-+- ..+|+...+.+.. .+. .||++-.
T Consensus 189 ~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g------GlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 189 FDLIVAADVLPYLGALEGLFAGAAGLLAPG------GLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred ccchhhhhHHHhhcchhhHHHHHHHhcCCC------ceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 999999999999999999999999999998 44444332 2233433444444 333 4887766
Q ss_pred Eccc
Q 023457 250 IHAD 253 (282)
Q Consensus 250 v~~~ 253 (282)
+...
T Consensus 263 ~~~t 266 (287)
T COG4976 263 IEDT 266 (287)
T ss_pred eecc
Confidence 5544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=98.20 Aligned_cols=129 Identities=21% Similarity=0.333 Sum_probs=85.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|.+++.++... +++|+++|+ +.+++.++.|+..++. .+++.+...||.. .+ ...+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~----~~--~~~~ 206 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFE----NI--EKQK 206 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhh----hC--cCCC
Confidence 35689999999999999988665 479999999 9999999999988764 3456666666543 11 1357
Q ss_pred ccEEEEcCccCCCC--------------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHH
Q 023457 183 FDVILASDVVYHDH--------------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSV 236 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--------------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~ 236 (282)
||+|+++.+..... .+..+++.+.++|+++ |.+++-.. +.....
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~g------G~l~lEig----~~q~~~ 276 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPN------GKIILEIG----FKQEEA 276 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCC------CEEEEEEC----CchHHH
Confidence 99999975432110 1345677788899998 55544322 112233
Q ss_pred HHHHHh-hcCceEEEcccC
Q 023457 237 FFKKAK-KLFDVETIHADL 254 (282)
Q Consensus 237 f~~~~~-~~f~ve~v~~~~ 254 (282)
....+. .+|....+..+.
T Consensus 277 v~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 277 VTQIFLDHGYNIESVYKDL 295 (506)
T ss_pred HHHHHHhcCCCceEEEecC
Confidence 333333 477665554443
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=88.00 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--C
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV--G 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~--~ 180 (282)
..+.+||||+||+|.+|+.++.+++++|+++|. +.+++.+++|++.|+. ..++.+...|... .+... .
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~----~l~~~~~~ 118 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALR----ALKFLAKK 118 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHH----HHHHhhcc
Confidence 358899999999999999999776679999999 9999999999999874 2345555544322 11111 2
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHH--HHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRL--FLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~--ll~~g 212 (282)
..++.||..|+-|.....+.++..+.. +++++
T Consensus 119 ~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~ 152 (189)
T TIGR00095 119 PTFDNVIYLDPPFFNGALQALLELCENNWILEDT 152 (189)
T ss_pred CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCC
Confidence 234445555888877777777776644 45444
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=92.43 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=77.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||+|||||...+.++ ..+.+|+++|+ +.|+..++.|+..++.. .+.+...|..+ ++.....
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa-~~~~~v~g~Di~~~~~~~a~~nl~~~g~~------~i~~~~~D~~~-----l~~~~~~ 248 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAG-LMGAKVIGCDIDWKMVAGARINLEHYGIE------DFFVKRGDATK-----LPLSSES 248 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHH-HhCCeEEEEcCCHHHHHHHHHHHHHhCCC------CCeEEecchhc-----CCcccCC
Confidence 457899999999999998876 45789999999 99999999999887641 24444433332 2222468
Q ss_pred ccEEEEcCccCCC---------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 183 FDVILASDVVYHD---------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 183 fD~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
||+|+++.+.-.. ..+..+++.+.++|++| |.++++...
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g------G~lv~~~~~ 296 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE------GWIVYAVPT 296 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCC------cEEEEEEcC
Confidence 9999997553211 12578999999999998 777776654
|
This family is found exclusively in the Archaea. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=90.91 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=65.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
++.+|||||||+|.++..++... ..+|+++|+ +.|++.++.+...++ +.+...+-.. ++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~~~~~-----l~~ 125 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---------VTFRQAVSDE-----LVA 125 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---------CeEEEEeccc-----ccc
Confidence 46799999999999998887432 248999999 999999988754332 2222222111 122
Q ss_pred cCCCccEEEEcCccCCCCC--HHHHHHHHHHHHh
Q 023457 179 VGREFDVILASDVVYHDHL--FDPLLVTLRLFLN 210 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~ 210 (282)
.+.+||+|+++.+++|..+ ...+++.+.++++
T Consensus 126 ~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 126 EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 2568999999999998765 3468888888775
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=90.85 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=80.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|. .+++|+++|. +.+++.+++|+..|+. .++.+...|..+. .......|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~----~~~~~~~~ 241 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQF----ATAQGEVP 241 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHH----HHhcCCCC
Confidence 367999999999999999985 4589999999 9999999999998874 2466665444321 11123479
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|+|+...+ + ......+++.+.+ +.++ +++++++.......+ +..+ .+|+++.+.
T Consensus 242 D~Vv~dPP-r-~G~~~~~~~~l~~-~~~~-------~ivyvsc~p~t~~rd---~~~l-~~y~~~~~~ 295 (315)
T PRK03522 242 DLVLVNPP-R-RGIGKELCDYLSQ-MAPR-------FILYSSCNAQTMAKD---LAHL-PGYRIERVQ 295 (315)
T ss_pred eEEEECCC-C-CCccHHHHHHHHH-cCCC-------eEEEEECCcccchhH---Hhhc-cCcEEEEEE
Confidence 99999765 2 2234455555443 2333 666666543332222 2222 589888776
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-08 Score=85.10 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=75.0
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
--|+.-..+-..++...+. ...++..|||+|||+|..++.++..++ ..|+|+|. +.++.++.+|+.++
T Consensus 126 PRpETEE~V~~Vid~~~~~----------~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~ 195 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNS----------EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL 195 (328)
T ss_pred cCccHHHHHHHHHHHHhhh----------hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH
Confidence 3566665555555444332 224456899999999999999986665 68999999 99999999999998
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCcc
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVV 192 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~l 192 (282)
.+ .+++.+.+.+.........+...+++|+|+++.+.
T Consensus 196 ~l-----~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 196 KL-----SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPY 232 (328)
T ss_pred hh-----cCceEEEecccccccccccccccCceeEEecCCCc
Confidence 86 67788886654432222223346789999998653
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-08 Score=87.33 Aligned_cols=96 Identities=26% Similarity=0.462 Sum_probs=71.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|..++.++...+ .+|+++|+ +.+++.+++|+..+. ..++.+...|+... +. ..+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~------~~~i~~~~~d~~~~----~~--~~~ 175 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL------GARVEFLQGDWFEP----LP--GGR 175 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC------CCcEEEEEccccCc----CC--CCc
Confidence 467999999999999999986653 79999999 999999999988221 34677777766441 11 368
Q ss_pred ccEEEEcCccCCCC--------------------------CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDH--------------------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--------------------------~~~~ll~~l~~ll~~g 212 (282)
||+|+++.+..... .+..+++.+.++|++|
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g 231 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG 231 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC
Confidence 99999975532211 1356777888999998
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=8e-09 Score=86.97 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
...+|||||||+|..++.+|...+ ..|+++|+ +.+++.+++++..++. .++.+...|.... .........
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~--~~~~~~~~~ 87 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANEL--LDKFFPDGS 87 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHH--HHhhCCCCc
Confidence 356999999999999999987654 68999999 9999999999887653 2566655444320 000011347
Q ss_pred ccEEEEcCcc--CCCC------CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVV--YHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~l--y~~~------~~~~ll~~l~~ll~~g 212 (282)
+|.|+++-+. +... ..+.+++.+.++|++|
T Consensus 88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 9999986432 2111 1267999999999998
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=85.24 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=64.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch-hhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-AVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-~~~~~~ 182 (282)
++.+|||||||+|..+..++...+..++++|+ +.++..++.+ .+.+...+..+ .+ +....+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~----~l~~~~~~s 75 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDE----GLEAFPDKS 75 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhh----cccccCCCC
Confidence 36799999999999998887555678899999 8888776531 12333334332 11 122468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHh
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLN 210 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~ 210 (282)
||+|+++.++++..+...+++.+.+.++
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 9999999999999888888887776654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-09 Score=87.94 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=79.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+..+|.|||||+|..+-.++++.+ +.|+++|. ++|++.++... .++++..-|...+. +..
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~------p~~ 91 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWK------PEQ 91 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcC------CCC
Confidence 3466999999999999999987775 79999999 99999986532 23444444433321 146
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
.+|+|+++-++.+.+++..++..+...|.|| |.+.+-+..
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pg------g~LAVQmPd 131 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPG------GVLAVQMPD 131 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCC------ceEEEECCC
Confidence 8999999999999999999999999999999 566665543
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=75.02 Aligned_cols=95 Identities=29% Similarity=0.353 Sum_probs=71.9
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEE
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~I 186 (282)
+|+|+|||+|..+..++.....+++++|. +.++..++++...+. ...+.+...++.+... ....+||+|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPP----EADESFDVI 70 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhcc----ccCCceEEE
Confidence 58999999999998887535579999999 888888875433322 2345565555554211 124689999
Q ss_pred EEcCccCC-CCCHHHHHHHHHHHHhcC
Q 023457 187 LASDVVYH-DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 187 i~sd~ly~-~~~~~~ll~~l~~ll~~g 212 (282)
+++.++++ ......+++.+.++++++
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 71 ISDPPLHHLVEDLARFLEEARRLLKPG 97 (107)
T ss_pred EEccceeehhhHHHHHHHHHHHHcCCC
Confidence 99999988 888999999999999998
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.9e-08 Score=90.17 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=85.5
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
..-.++..++.++. ..+|.+|||+|||+|..++.++...+ ++|+++|+ +.+++.+++|+..+
T Consensus 222 ~Qd~~s~~~~~~L~----------------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~ 285 (426)
T TIGR00563 222 VQDASAQWVATWLA----------------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL 285 (426)
T ss_pred EECHHHHHHHHHhC----------------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 44567787777772 23478999999999999999986654 79999999 99999999999987
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEc------CccCCCCC----------------HHHHHHHHHHH
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILAS------DVVYHDHL----------------FDPLLVTLRLF 208 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~s------d~ly~~~~----------------~~~ll~~l~~l 208 (282)
+. ...+.....+... .... ....+||.|++. .++...+. ...++..+.++
T Consensus 286 g~-----~~~v~~~~~d~~~--~~~~-~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~ 357 (426)
T TIGR00563 286 GL-----TIKAETKDGDGRG--PSQW-AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL 357 (426)
T ss_pred CC-----CeEEEEecccccc--cccc-ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 64 1122222222211 0000 124579999962 23332222 35788999999
Q ss_pred HhcCCCCCCCceEEEEEEee
Q 023457 209 LNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 209 l~~g~~~~~~g~~~il~~~~ 228 (282)
|+|| |.+++..+..
T Consensus 358 Lkpg------G~lvystcs~ 371 (426)
T TIGR00563 358 LKTG------GTLVYATCSV 371 (426)
T ss_pred cCCC------cEEEEEeCCC
Confidence 9999 7777766654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.2e-09 Score=100.21 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=74.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~ 179 (282)
.++.+|||+|||+|..+..++... +.+|+++|+ +.|++.++++...++ .++.+...|..+ ++ ..
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~d-----Lp~~fe 484 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAIN-----LSSSFE 484 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHh-----CccccC
Confidence 357899999999999988887554 479999999 899999998876433 133443333222 21 22
Q ss_pred CCCccEEEEcCccCCC-------------CCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 180 GREFDVILASDVVYHD-------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~-------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+++||+|+++.++++. .....+++.+.++|+|| |.+++.
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG------GrLII~ 536 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG------GRIIIR 536 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC------cEEEEE
Confidence 4689999998777532 35678999999999998 565554
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=83.41 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=84.8
Q ss_pred CccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHH
Q 023457 69 GLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 69 g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~ 145 (282)
|.-.....++.+.+..| ...+|.+|||+|||+|..++.++...+ +.|+++|+ +.+++.+++
T Consensus 51 G~~~~qd~~s~~~~~~l----------------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~ 114 (264)
T TIGR00446 51 GLYYIQEASSMIPPLAL----------------EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIA 114 (264)
T ss_pred CeEEEECHHHHHHHHHh----------------CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH
Confidence 43334566776666555 123478999999999999999886653 58999999 999999999
Q ss_pred HHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC------C----------------CHHHHHH
Q 023457 146 NVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD------H----------------LFDPLLV 203 (282)
Q Consensus 146 n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~------~----------------~~~~ll~ 203 (282)
|+..++. .++.+...|... +......||+|++..+.... + ....+++
T Consensus 115 n~~~~g~------~~v~~~~~D~~~-----~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~ 183 (264)
T TIGR00446 115 NINRCGV------LNVAVTNFDGRV-----FGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELID 183 (264)
T ss_pred HHHHcCC------CcEEEecCCHHH-----hhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHH
Confidence 9998773 235555433222 22223469999974332211 0 1245888
Q ss_pred HHHHHHhcCCCCCCCceEEEEEEe
Q 023457 204 TLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 204 ~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
.+.++++|| |.+++..+.
T Consensus 184 ~a~~~lkpg------G~lvYstcs 201 (264)
T TIGR00446 184 SAFDALKPG------GVLVYSTCS 201 (264)
T ss_pred HHHHhcCCC------CEEEEEeCC
Confidence 888999998 666655444
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-08 Score=83.80 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=69.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||+|||+|..+..++.. ..+|+++|. +.+++.+++|+..++. .++.+...+... .+. ...+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~----~~~-~~~~ 144 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWK----GWP-AYAP 144 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCccc----CCC-cCCC
Confidence 35789999999999999888754 469999999 9999999999987653 235555544322 111 1367
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++...+. .+.+.+.++|++| |.+++..
T Consensus 145 fD~I~~~~~~~------~~~~~l~~~L~~g------G~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAP------EIPRALLEQLKEG------GILVAPV 175 (212)
T ss_pred cCEEEEccCch------hhhHHHHHhcCCC------cEEEEEE
Confidence 99999875442 3345677899998 5655543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=86.62 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=73.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--c
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--V 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--~ 179 (282)
++++|||||||+|..++.++... .++|+++|. +++++.+++|++.++. .+++.+...+..+.. ..+.. .
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L-~~l~~~~~ 141 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSAL-DQLLNNDP 141 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHH-HHHHhCCC
Confidence 47799999999999988887654 369999999 9999999999999885 456777665544310 01111 1
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|+.- .- ...+..++..+.+++++|
T Consensus 142 ~~~fD~VfiD-a~--k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 142 KPEFDFAFVD-AD--KPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred CCCCCEEEEC-CC--HHHHHHHHHHHHHhcCCC
Confidence 3589999983 21 245678889999999998
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-07 Score=88.01 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=76.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~ 179 (282)
.+|.+|||+|||+|..++.++... +++|+++|+ +.+++.+++|+...+. ..+.+...|... +. ..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~-----l~~~~ 304 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAER-----LTEYV 304 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhh-----hhhhh
Confidence 347899999999999999988665 479999999 9999999999998763 235555544433 11 12
Q ss_pred CCCccEEEEcCccCC------CC----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 180 GREFDVILASDVVYH------DH----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~------~~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
...||.|++.-+... .+ ....++..+.++|+|| |.+++..+..
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG------G~LvYsTCs~ 369 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG------GILLYSTCTV 369 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC------CEEEEEECCC
Confidence 457999997322211 11 1356788889999998 6766655543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-09 Score=88.91 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=74.5
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEE
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~I 186 (282)
.++|+|||+|..++.+|. ...+|++||+ +.||+.+++.-.. +-......+.+....++...+++.|+|
T Consensus 36 ~a~DvG~G~Gqa~~~iae-~~k~VIatD~s~~mL~~a~k~~~~----------~y~~t~~~ms~~~~v~L~g~e~SVDlI 104 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAE-HYKEVIATDVSEAMLKVAKKHPPV----------TYCHTPSTMSSDEMVDLLGGEESVDLI 104 (261)
T ss_pred eEEEeccCCCcchHHHHH-hhhhheeecCCHHHHHHhhcCCCc----------ccccCCccccccccccccCCCcceeee
Confidence 899999999988888874 4689999999 9999987652211 111111122222222333336799999
Q ss_pred EEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc
Q 023457 187 LASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 187 i~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~ 231 (282)
+++.++|+. +.+.+.+.+.++|++. |+++.+..+....
T Consensus 105 ~~Aqa~HWF-dle~fy~~~~rvLRk~------Gg~iavW~Y~dd~ 142 (261)
T KOG3010|consen 105 TAAQAVHWF-DLERFYKEAYRVLRKD------GGLIAVWNYNDDF 142 (261)
T ss_pred hhhhhHHhh-chHHHHHHHHHHcCCC------CCEEEEEEccCCC
Confidence 999999876 6889999999999998 5566666554333
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-08 Score=87.13 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||+|||+|.+++.++... +.+|+++|+ +.+++.+++|.. ++.+..-|... +. ...+|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e-----~~-~~~kF 127 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFE-----FE-SNEKF 127 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhh-----hc-ccCCC
Confidence 4589999999999999887654 479999999 999999887632 22333322222 11 13579
Q ss_pred cEEEEcCccCCCCC--------------------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc---cHHHHHHH
Q 023457 184 DVILASDVVYHDHL--------------------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK---KDSVFFKK 240 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--------------------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~---~~~~f~~~ 240 (282)
|+|+++.++++... +..+++....+|+|+ |...++....+-|. ...++...
T Consensus 128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~------G~~~~~yss~~~y~~sl~~~~y~~~ 201 (279)
T PHA03411 128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPT------GSAGFAYSGRPYYDGTMKSNKYLKW 201 (279)
T ss_pred cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCC------ceEEEEEeccccccccCCHHHHHHH
Confidence 99999998875321 245666667777887 55444433323222 13444444
Q ss_pred Hh-hcCce
Q 023457 241 AK-KLFDV 247 (282)
Q Consensus 241 ~~-~~f~v 247 (282)
++ .||..
T Consensus 202 l~~~g~~~ 209 (279)
T PHA03411 202 SKQTGLVT 209 (279)
T ss_pred HHhcCcEe
Confidence 44 36654
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-09 Score=87.01 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..|.+||||-||||.+|+.++.+++++|+++|. +.++..+++|++.-+. ..++.+...|.... .........+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~-l~~~~~~~~~ 114 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKF-LLKLAKKGEK 114 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHH-HHHHHHCTS-
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHH-HHhhcccCCC
Confidence 358899999999999999998888899999999 9999999999997664 23455554332210 0011112578
Q ss_pred ccEEEEcCccCCCCC-HHHHHHHHH--HHHhcC
Q 023457 183 FDVILASDVVYHDHL-FDPLLVTLR--LFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~-~~~ll~~l~--~ll~~g 212 (282)
||+|++ |+-|.... +..++..+. .+|+++
T Consensus 115 fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~ 146 (183)
T PF03602_consen 115 FDIIFL-DPPYAKGLYYEELLELLAENNLLNED 146 (183)
T ss_dssp EEEEEE---STTSCHHHHHHHHHHHHTTSEEEE
T ss_pred ceEEEE-CCCcccchHHHHHHHHHHHCCCCCCC
Confidence 999988 77777776 488888887 567765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-08 Score=90.24 Aligned_cols=122 Identities=12% Similarity=0.118 Sum_probs=82.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||||||+|..++.+|. .+.+|+++|. +.+++.+++|+..|+. .++.+...|..+. ......+|
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~-~~~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~----~~~~~~~~ 301 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG-PDTQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKF----ATAQMSAP 301 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh-cCCeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHH----HHhcCCCC
Confidence 367999999999999999984 4589999999 9999999999998874 2456655444321 11112469
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|+|++..+ |. .....+++.+.. ++|+ +++++.+.......+-. .+ .+|+++.+.
T Consensus 302 D~vi~DPP-r~-G~~~~~l~~l~~-~~p~-------~ivyvsc~p~TlaRDl~---~L-~gy~l~~~~ 355 (374)
T TIGR02085 302 ELVLVNPP-RR-GIGKELCDYLSQ-MAPK-------FILYSSCNAQTMAKDIA---EL-SGYQIERVQ 355 (374)
T ss_pred CEEEECCC-CC-CCcHHHHHHHHh-cCCC-------eEEEEEeCHHHHHHHHH---Hh-cCceEEEEE
Confidence 99998655 43 455667777754 4554 66776654332222222 22 689998765
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-08 Score=87.25 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=83.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++++|||||||+|.++..++...+ .+|+++|+ +.+++.++++...+.. ..++.+..-|..+ .+.....+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~----~l~~~~~~ 136 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAE----YIAVHRHS 136 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHH----HHHhCCCC
Confidence 367899999999999998876654 68999999 9999999988765431 3456665533322 12222468
Q ss_pred ccEEEEcCccCCCC-----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCc
Q 023457 183 FDVILASDVVYHDH-----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFD 246 (282)
Q Consensus 183 fD~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ 246 (282)
||+|++. .+.... ....+++.+.++|+|+ |.+++... .+......+++.+++.|.
T Consensus 137 yD~I~~D-~~~~~~~~~~l~t~efl~~~~~~L~pg------Gvlvin~~--~~~~~~~~~l~~l~~~F~ 196 (262)
T PRK04457 137 TDVILVD-GFDGEGIIDALCTQPFFDDCRNALSSD------GIFVVNLW--SRDKRYDRYLERLESSFE 196 (262)
T ss_pred CCEEEEe-CCCCCCCccccCcHHHHHHHHHhcCCC------cEEEEEcC--CCchhHHHHHHHHHHhcC
Confidence 9999973 322111 2378999999999998 55544322 222235667777777785
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=82.99 Aligned_cols=88 Identities=17% Similarity=0.125 Sum_probs=64.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~ 182 (282)
+|.+|||||||.|.+--.+....+.+..++|+ ++.+..+.+ + .+.+.+.|... .+. ..+++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----r---------Gv~Viq~Dld~----gL~~f~d~s 75 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----R---------GVSVIQGDLDE----GLADFPDQS 75 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----c---------CCCEEECCHHH----hHhhCCCCC
Confidence 47899999999999988887656788999999 654443322 1 34567766665 232 34789
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHH
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFL 209 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll 209 (282)
||+||++.++......+.+++.+.|+-
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVg 102 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVG 102 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhc
Confidence 999999999988888888877765543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.1e-08 Score=99.13 Aligned_cols=83 Identities=22% Similarity=0.093 Sum_probs=62.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhccccc----------ccCCCcEEEEEEEeCCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLI----------SLRGGSVHVAPLRWGEAE 172 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~----------~~~~~~v~~~~ld~~~~~ 172 (282)
++++|||||||+|.+++.+++..+ ++|+++|+ +.+++.+++|+..|+... +....++.+..-||...
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 467999999999999999987764 79999999 999999999999886420 00124677777777652
Q ss_pred ccchhhcCCCccEEEEcCc
Q 023457 173 ANDVAVVGREFDVILASDV 191 (282)
Q Consensus 173 ~~~~~~~~~~fD~Ii~sd~ 191 (282)
+.....+||+||++.+
T Consensus 197 ---~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 197 ---CRDNNIELDRIVGCIP 212 (1082)
T ss_pred ---ccccCCceEEEEECCC
Confidence 1111236999999855
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=95.52 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. ..+|+++|+ +.+++.++. .++. ..++.+...+.... .++....+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~---~~~~-----~~~i~~~~~d~~~~---~~~~~~~~f 104 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNES---INGH-----YKNVKFMCADVTSP---DLNISDGSV 104 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHH---Hhcc-----CCceEEEEeccccc---ccCCCCCCE
Confidence 4679999999999999999854 579999999 888876543 2221 23556666555431 122235689
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g 212 (282)
|+|+++.++++... ...+++.+.++|+||
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987654 678999999999998
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=78.17 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++|+.. ..++.+...|+.+. ......
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~-----~~~~~~ 77 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKF-----DLPKLQ 77 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcC-----CccccC
Confidence 34679999999999999999865 689999999 8999999988753 22556665554441 112336
Q ss_pred ccEEEEcCcc
Q 023457 183 FDVILASDVV 192 (282)
Q Consensus 183 fD~Ii~sd~l 192 (282)
||+|+++.+.
T Consensus 78 ~d~vi~n~Py 87 (169)
T smart00650 78 PYKVVGNLPY 87 (169)
T ss_pred CCEEEECCCc
Confidence 8999986544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=82.55 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=70.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+-.+| ++..+|+.+|. +...+.+++|+...+. .++.+..-|=.. .++ ...+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~----G~~-~~aP 138 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSK----GWP-EEAP 138 (209)
T ss_pred CCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCccc----CCC-CCCC
Confidence 458899999999999999998 45569999999 9999999999998774 246665533222 111 1468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||.|+..-..- ..++. +..-|++| |++++-..
T Consensus 139 yD~I~Vtaaa~--~vP~~----Ll~QL~~g------Grlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAP--EVPEA----LLDQLKPG------GRLVIPVG 170 (209)
T ss_pred cCEEEEeeccC--CCCHH----HHHhcccC------CEEEEEEc
Confidence 99999864442 22344 44567888 67766554
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=89.93 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCCCH----HHHHHHHHh------CCEEEEEeh-HhHHHHHHHHHHh----cccc----------------
Q 023457 105 CQLNILELGSGTGL----VGMAAAAIL------GAKVTVTDL-PHVLTNLQFNVDA----NAGL---------------- 153 (282)
Q Consensus 105 ~g~~VLELGcGtG~----~si~la~~~------~~~V~~tD~-~~~l~~~~~n~~~----n~~~---------------- 153 (282)
++.+|+++|||||- +++.++... ..+|++||+ +.|++.+++.+-. ....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35799999999996 455555433 258999999 9999999875411 0000
Q ss_pred cc-cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 154 IS-LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 154 ~~-~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
+. ....++.+...|..+ .+...++||+|++..++.+.. ....+++.+.+.|+||
T Consensus 179 v~~~ir~~V~F~~~dl~~-----~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLA-----ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCC-----CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 00 001245555544443 112256899999998887654 5568999999999998
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=77.42 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=93.6
Q ss_pred eeehh---HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHH
Q 023457 73 KLWPA---ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 73 ~~W~~---a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~ 147 (282)
.+|-+ -....+||..+.... +......+|||||||.|.+-..+++..- ...+++|+ +.++++++...
T Consensus 40 EvWFg~~ae~riv~wl~d~~~~~--------rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niA 111 (227)
T KOG1271|consen 40 EVWFGEDAEERIVDWLKDLIVIS--------RVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIA 111 (227)
T ss_pred ceecCCcHHHHHHHHHHhhhhhh--------hhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Confidence 57754 355666776654311 0111223999999999999999886543 45999999 99999987766
Q ss_pred HhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCc---cCC-----CCCHHHHHHHHHHHHhcCCCCCCCc
Q 023457 148 DANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDV---VYH-----DHLFDPLLVTLRLFLNSGEPEPKKK 219 (282)
Q Consensus 148 ~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~---ly~-----~~~~~~ll~~l~~ll~~g~~~~~~g 219 (282)
++++. .+.+++.++|..+++ ...++||+|+--.. +-- ..-+...+..+.++|+|+ |
T Consensus 112 e~~~~-----~n~I~f~q~DI~~~~-----~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~------g 175 (227)
T KOG1271|consen 112 ERDGF-----SNEIRFQQLDITDPD-----FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG------G 175 (227)
T ss_pred HhcCC-----CcceeEEEeeccCCc-----ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCC------c
Confidence 77764 556999999988731 12467787773221 110 112245678889999998 6
Q ss_pred eEEEEEEeecCcccHHHHHHHHhh-cCce
Q 023457 220 KMNFVMAHLRRWKKDSVFFKKAKK-LFDV 247 (282)
Q Consensus 220 ~~~il~~~~~~~~~~~~f~~~~~~-~f~v 247 (282)
.++|.++ ++ +..+..+.... +|.+
T Consensus 176 ifvItSC---N~-T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 176 IFVITSC---NF-TKDELVEEFENFNFEY 200 (227)
T ss_pred EEEEEec---Cc-cHHHHHHHHhcCCeEE
Confidence 6666554 33 34555555543 4543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=76.70 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+.+||||||+|.++-++++..+ +.+.+||+ +.+++...+.+..|+. .+.+..-|... .+. .++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-------~~~~V~tdl~~----~l~--~~~ 110 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-------HIDVVRTDLLS----GLR--NES 110 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------ccceeehhHHh----hhc--cCC
Confidence 56899999999999999987665 57899999 9999999998888874 23344433332 111 367
Q ss_pred ccEEEEcCccCCC---------------------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH
Q 023457 183 FDVILASDVVYHD---------------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA 241 (282)
Q Consensus 183 fD~Ii~sd~ly~~---------------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~ 241 (282)
.|+++-+...--. +..+.++..+..+|.|. |.++++.. .++. ..+.++.+
T Consensus 111 VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~------Gv~Ylv~~-~~N~--p~ei~k~l 181 (209)
T KOG3191|consen 111 VDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPR------GVFYLVAL-RANK--PKEILKIL 181 (209)
T ss_pred ccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcC------ceEEeeeh-hhcC--HHHHHHHH
Confidence 8888876443211 12567777777888887 45555443 3442 34455544
Q ss_pred h-hcCceEEEcccCCCCCcccceEEEEEee
Q 023457 242 K-KLFDVETIHADLPCNGARVGVVVYRMTG 270 (282)
Q Consensus 242 ~-~~f~ve~v~~~~~~~~~~~~~~v~~~~~ 270 (282)
+ ++|.+.....+.. ....+.+++++|
T Consensus 182 ~~~g~~~~~~~~Rk~---~~E~l~ilkf~r 208 (209)
T KOG3191|consen 182 EKKGYGVRIAMQRKA---GGETLSILKFTR 208 (209)
T ss_pred hhcccceeEEEEEec---CCceEEEEEEEe
Confidence 4 5888876654432 224466777765
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-07 Score=85.58 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=75.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+|.+|||+|||+|..++.++... +++|+++|+ +.+++.+++|+..++. .++.+...|... +. ..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~-----~~-~~ 316 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARS-----FS-PE 316 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccc-----cc-cC
Confidence 347899999999999998887654 369999999 9999999999988763 245555544433 11 23
Q ss_pred CCccEEEEcC------ccCCCC----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 181 REFDVILASD------VVYHDH----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 181 ~~fD~Ii~sd------~ly~~~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
..||+|++-. ++...+ ....++..+.++++|| |.+++..+..
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg------G~lvystcs~ 380 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG------GVLVYATCSI 380 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC------cEEEEEeCCC
Confidence 5799999621 111110 1236899999999999 6777765543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=81.08 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=81.1
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...+|.+|||.|.|+|.++..+|...+ ++|+..|+ ++.++.+++|+...++ .+++....-|..+. .
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~-----~- 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREG-----I- 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEecccccc-----c-
Confidence 446799999999999999999986554 69999999 9999999999998764 34466655444331 1
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
....||.|+. +.++...++..+..+|+|| |.+++.++.
T Consensus 160 ~~~~vDav~L-----Dmp~PW~~le~~~~~Lkpg------g~~~~y~P~ 197 (256)
T COG2519 160 DEEDVDAVFL-----DLPDPWNVLEHVSDALKPG------GVVVVYSPT 197 (256)
T ss_pred cccccCEEEE-----cCCChHHHHHHHHHHhCCC------cEEEEEcCC
Confidence 1238999998 3468899999999999999 676666554
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.4e-08 Score=85.36 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=63.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
...+|||+|||+|..+..++...+ ..|+++|+ +.++..++++. ..+.+...+.. .++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~-----~lp~~ 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSH-----RLPFA 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecc-----cCCCc
Confidence 356899999999999988875543 37999999 99999887642 12333333322 23333
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
++.||+|++... . ..++.+.++|+|| |.++++.
T Consensus 149 ~~sfD~I~~~~~---~----~~~~e~~rvLkpg------G~li~~~ 181 (272)
T PRK11088 149 DQSLDAIIRIYA---P----CKAEELARVVKPG------GIVITVT 181 (272)
T ss_pred CCceeEEEEecC---C----CCHHHHHhhccCC------CEEEEEe
Confidence 568999998532 2 2457888999998 6665554
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=89.44 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=60.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEE-EeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPL-RWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~l-d~~~~~~~~~~~~~ 180 (282)
.+.+|||||||+|.+...++.+ .+.+++++|+ +.+++.+++|++.| ++ ..++.+... +-.. ....+....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~-i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKA-IFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhh-hhhcccccC
Confidence 4679999999999877666644 3579999999 99999999999999 54 445655421 1111 000111124
Q ss_pred CCccEEEEcCccCCCC
Q 023457 181 REFDVILASDVVYHDH 196 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~ 196 (282)
..||+|+++.++|...
T Consensus 188 ~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 188 ERFDATLCNPPFHASA 203 (321)
T ss_pred CceEEEEeCCCCcCcc
Confidence 5899999999988644
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-09 Score=93.89 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=80.6
Q ss_pred cceeehhHHHHHHHHhhcC-CCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHH-HHH
Q 023457 71 SFKLWPAATTLVTLLDQFC-SHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQ-FNV 147 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~-~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~-~n~ 147 (282)
|.++|.++..|..++.... .. -.+.+++|||||||+|+.++.+.......+.+.|+ ...++... .|+
T Consensus 91 g~k~wecS~dl~~~l~~e~~~~----------~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~ 160 (282)
T KOG2920|consen 91 GLKLWECSVDLLPYLKEEIGAQ----------MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNI 160 (282)
T ss_pred ceEEeecHHHHHHHHHHHhhhh----------eEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccce
Confidence 7899999999999997542 22 24679999999999999999998776689999999 76663322 222
Q ss_pred HhcccccccCCCc---EEEEEE---EeCCCCccchhhcC--CCccEEEEcCccCCCCCHHHH-HHHHHHHHhcC
Q 023457 148 DANAGLISLRGGS---VHVAPL---RWGEAEANDVAVVG--REFDVILASDVVYHDHLFDPL-LVTLRLFLNSG 212 (282)
Q Consensus 148 ~~n~~~~~~~~~~---v~~~~l---d~~~~~~~~~~~~~--~~fD~Ii~sd~ly~~~~~~~l-l~~l~~ll~~g 212 (282)
..|...-..+.+. ..+..- ||.. ... ..||+|+++..+|.......+ ..+...++++.
T Consensus 161 ~~~~~~~~~~~e~~~~~~i~~s~l~dg~~-------~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D 227 (282)
T KOG2920|consen 161 LVNSHAGVEEKENHKVDEILNSLLSDGVF-------NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTD 227 (282)
T ss_pred ecchhhhhhhhhcccceeccccccccchh-------hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCcc
Confidence 2221100000000 011111 3311 112 389999999999999888877 44444555555
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-08 Score=84.43 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=64.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
+.+|||+|||+|.+++.++... ..+|+++|+ +.+++.++.|+.. +.+..-|+.. .. ..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----------~~~~~~D~~~-----~~-~~ 112 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----------ATWINADALT-----TE-FD 112 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----------CEEEEcchhc-----cc-cc
Confidence 5699999999999999988642 358999999 9999999987531 2333333322 11 14
Q ss_pred CCccEEEEcCccCCCC------------CHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDH------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~------------~~~~ll~~l~~ll~~g 212 (282)
.+||+||++.+.+... ....++....+++++|
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 5899999998887321 1456888888877776
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-06 Score=73.32 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-ch--h
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DV--A 177 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~--~ 177 (282)
.++.+|||||||+|.++..++.... .+|+++|+ +.+ . ...+.+...++.+.... .+ .
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~---------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P---------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c---------CCCceEEEeeCCChhHHHHHHHH
Confidence 4588999999999999998886652 57999999 533 0 11345555555441100 00 0
Q ss_pred hcCCCccEEEEcCccC----C-CC------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCc
Q 023457 178 VVGREFDVILASDVVY----H-DH------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFD 246 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly----~-~~------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ 246 (282)
....+||+|++....+ + .. ..+.++..+.++|+|| |.+++.... ......++..+++.|.
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~lvi~~~~---~~~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK------GNFVVKVFQ---GEEIDEYLNELRKLFE 164 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC------CEEEEEEcc---CccHHHHHHHHHhhhc
Confidence 1245799999853321 1 11 1367899999999998 666654422 2234566676666664
Q ss_pred eEEEc
Q 023457 247 VETIH 251 (282)
Q Consensus 247 ve~v~ 251 (282)
-..+.
T Consensus 165 ~~~~~ 169 (188)
T TIGR00438 165 KVKVT 169 (188)
T ss_pred eEEEe
Confidence 33333
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-08 Score=87.60 Aligned_cols=99 Identities=19% Similarity=0.317 Sum_probs=78.0
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.++.|||+|||+|.+++++|.+++++|++++-++|.+.+++-++.|.+ .+++.+......+ ++ .++
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----~~rItVI~GKiEd-----ie-LPE 242 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----ADRITVIPGKIED-----IE-LPE 242 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----cceEEEccCcccc-----cc-Cch
Confidence 568899999999999999999998888999999999999999999999874 5677777644433 22 257
Q ss_pred CccEEEEcCc---cCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDV---VYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~---ly~~~~~~~ll~~l~~ll~~g 212 (282)
+.|+||+-.+ +++...++..+- .++.|+|+
T Consensus 243 k~DviISEPMG~mL~NERMLEsYl~-Ark~l~P~ 275 (517)
T KOG1500|consen 243 KVDVIISEPMGYMLVNERMLESYLH-ARKWLKPN 275 (517)
T ss_pred hccEEEeccchhhhhhHHHHHHHHH-HHhhcCCC
Confidence 8999998644 445555665553 34889988
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=85.53 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=68.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
++.+|||||||+|..+..++..+ +.+|+++|+ ++||+.+++++..... ..++.....|+.+. ..+...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----~~~v~~i~gD~~~~--~~~~~~~~ 135 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----QLEVHGICADFTQP--LALPPEPA 135 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----CceEEEEEEcccch--hhhhcccc
Confidence 46789999999999999888776 479999999 9999999988765321 22344445555431 111110
Q ss_pred CCCccEEEEcCccCCC--CCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHD--HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g 212 (282)
.....++++..++++. +....+++.+.+.|+||
T Consensus 136 ~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred cCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 1123345555566654 34667999999999998
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-07 Score=84.82 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=80.1
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-------
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV------- 178 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~------- 178 (282)
.+||||+||+|.+++.+++ ...+|+++|. +.+++.+++|+..|+. .++.+...|..+... .+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~-~~~~~~~~~~~ 279 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQ-AMNGVREFNRL 279 (362)
T ss_pred CeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHH-HHhhccccccc
Confidence 4799999999999998874 4579999999 9999999999999874 256666555433100 0100
Q ss_pred -----cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEcc
Q 023457 179 -----VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHA 252 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~ 252 (282)
...+||+|+.-.+ + ....+.+++.|.+ +. +++++.+... +...=+..+..+|+++.+.-
T Consensus 280 ~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~-------~ivyvSC~p~---tlarDl~~L~~gY~l~~v~~ 343 (362)
T PRK05031 280 KGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YE-------RILYISCNPE---TLCENLETLSQTHKVERFAL 343 (362)
T ss_pred ccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cC-------CEEEEEeCHH---HHHHHHHHHcCCcEEEEEEE
Confidence 0125899998444 5 4456666666654 44 6677766432 22221222224899987763
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=83.65 Aligned_cols=91 Identities=21% Similarity=0.144 Sum_probs=64.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|..+..+++..+ ..|+++|. +.+++.+++++..++. .++.+...|... ......
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~-----~~~~~~ 148 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYY-----GVPEFA 148 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhh-----cccccC
Confidence 478999999999999999986654 37999999 9999999999988763 245544433222 111125
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|+++..+ ..+...+.+.|++|
T Consensus 149 ~fD~Ii~~~g~------~~ip~~~~~~Lkpg 173 (322)
T PRK13943 149 PYDVIFVTVGV------DEVPETWFTQLKEG 173 (322)
T ss_pred CccEEEECCch------HHhHHHHHHhcCCC
Confidence 79999986433 22344566788888
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=88.19 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=81.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|. .+.+|+++|+ +.+++.+++|+..|+. .++.+...|+.+.. ..+......|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~-~~~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l-~~~~~~~~~~ 363 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAK-QAKSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVL-PKQPWAGQIP 363 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHH-hCCEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHH-HHHHhcCCCC
Confidence 357999999999999999985 4579999999 9999999999998874 25666655443210 0111113469
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH-hhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA-KKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~-~~~f~ve~v~ 251 (282)
|+|++..+ + ......+++.+.+ ++++ +++++++. ..+...-+..+ ..+|.++.+.
T Consensus 364 D~vi~dPP-r-~G~~~~~l~~l~~-l~~~-------~ivyvsc~---p~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 364 DVLLLDPP-R-KGCAAEVLRTIIE-LKPE-------RIVYVSCN---PATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred CEEEECcC-C-CCCCHHHHHHHHh-cCCC-------EEEEEcCC---HHHHHHHHHHHHHCCeeEEEEE
Confidence 99998544 2 2334666666654 4554 55665543 23333333333 4578887665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-07 Score=82.67 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=79.4
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hc----
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VV---- 179 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~---- 179 (282)
.+|||||||+|..++.++.. ..+|+++|. +.+++.+++|+..|+. .++.+...|..+....... ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999988744 579999999 9999999999999874 2466665554331100000 00
Q ss_pred -----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 180 -----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 180 -----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
...||+|+.-.+ .....+.+++.+.+ ++ +++++.+.......+-. .+..+|+++.+.
T Consensus 272 ~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~-------~ivYvsC~p~tlaRDl~---~L~~~Y~l~~v~ 333 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YE-------RILYISCNPETLKANLE---QLSETHRVERFA 333 (353)
T ss_pred ccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CC-------cEEEEEcCHHHHHHHHH---HHhcCcEEEEEE
Confidence 124899998554 34556666666644 44 67777765333322222 222458888776
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=78.84 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=76.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEE-EEeCCCCccchhh-c
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAP-LRWGEAEANDVAV-V 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~-ld~~~~~~~~~~~-~ 179 (282)
..++|||||.++|.-++.+|..++ ++++.+|+ ++..+.+++|++..+. .+++.+.. +|+.+ .+.. .
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~i~~~~~gdal~----~l~~~~ 129 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDRIELLLGGDALD----VLSRLL 129 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cceEEEEecCcHHH----HHHhcc
Confidence 478999999999999999997766 68999999 9999999999999885 44555555 34443 2332 3
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++||+||.- .....++..+..+.++|+||
T Consensus 130 ~~~fDliFID---adK~~yp~~le~~~~lLr~G 159 (219)
T COG4122 130 DGSFDLVFID---ADKADYPEYLERALPLLRPG 159 (219)
T ss_pred CCCccEEEEe---CChhhCHHHHHHHHHHhCCC
Confidence 5799999982 23457889999999999998
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=80.57 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=66.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+|.+|||||||+|..+-.++...+ ..|+++|. +.+.+.+++|+...+. .++.+..-|-.. ..+ ..
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~----g~~-~~ 139 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSE----GWP-EE 139 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGG----TTG-GG
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhh----ccc-cC
Confidence 3588999999999999999986665 37999999 9999999999998764 356666543222 111 14
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.+||.|+..-.+. ..... +...|++| |++++..
T Consensus 140 apfD~I~v~~a~~--~ip~~----l~~qL~~g------GrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVP--EIPEA----LLEQLKPG------GRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBS--S--HH----HHHTEEEE------EEEEEEE
T ss_pred CCcCEEEEeeccc--hHHHH----HHHhcCCC------cEEEEEE
Confidence 5899999976663 22333 44567888 5655544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=85.19 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=74.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+..+||||||+|...+.+|...+ ..|+|+|+ +.++..+.+++..+++ .++.+...|..... . ....+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll-~--~~~~~ 191 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLL-E--LLPSN 191 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhh-h--hCCCC
Confidence 4567999999999999999997764 69999999 9999999999988763 35666654433210 0 11256
Q ss_pred CccEEEEcCccCCCCC------HHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHL------FDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~------~~~ll~~l~~ll~~g 212 (282)
.+|.|+++-+.-+... .+.+++.+.++|++|
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 8999998744433221 268999999999998
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=74.43 Aligned_cols=139 Identities=11% Similarity=0.019 Sum_probs=89.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhc------ccccccCCCcEEEEEEEeCCCCccchh
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDAN------AGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n------~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
++.+||..|||.|.-.+.+| ..|.+|+++|+ +.+++.+.+..... +.........+.+.+.|+-+.... .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~--~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI--A 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHH-hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--c
Confidence 46799999999999999998 55789999999 88888765421100 000001134566666666552110 0
Q ss_pred hcCCCccEEEEcCccC--CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc---c----cHHHHHHHHhhcCceE
Q 023457 178 VVGREFDVILASDVVY--HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW---K----KDSVFFKKAKKLFDVE 248 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~---~----~~~~f~~~~~~~f~ve 248 (282)
...+.||+|+-.-++. .++.....++.+.++|+|| |.++++....... + +...........|+++
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg------g~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN------TQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC------cEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 1135799988644443 4566788999999999998 5666655432111 1 1445555666788888
Q ss_pred EEcc
Q 023457 249 TIHA 252 (282)
Q Consensus 249 ~v~~ 252 (282)
.+..
T Consensus 194 ~l~~ 197 (226)
T PRK13256 194 LIDS 197 (226)
T ss_pred Eeee
Confidence 8774
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-07 Score=78.55 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=85.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..+|.+|||-|.|+|.++..+++..+ ++|+..|. ++..+.+++|+..+++ ..++.+..-|....... ...
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~--~~~ 110 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFD--EEL 110 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--S--TT-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceeccccc--ccc
Confidence 35699999999999999999997765 79999999 9999999999999885 55788887776531110 112
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHH-hcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh-cC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFL-NSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK-LF 245 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll-~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f 245 (282)
...+|.|+. |+ +.....+..+.+.| ++| |.+++. ....+..+.....+++ +|
T Consensus 111 ~~~~DavfL-Dl----p~Pw~~i~~~~~~L~~~g------G~i~~f---sP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 111 ESDFDAVFL-DL----PDPWEAIPHAKRALKKPG------GRICCF---SPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp TTSEEEEEE-ES----SSGGGGHHHHHHHE-EEE------EEEEEE---ESSHHHHHHHHHHHHHTTE
T ss_pred cCcccEEEE-eC----CCHHHHHHHHHHHHhcCC------ceEEEE---CCCHHHHHHHHHHHHHCCC
Confidence 467999988 33 56777888899999 777 454444 3455555666666654 67
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=79.02 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=73.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
+.++||||||++|.-++.+|...+ ++|+.+|. ++..+.+++++...+. .+++++...+..+.. ..+...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l-~~l~~~~~ 118 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVL-PELANDGE 118 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHH-HHHHHTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhH-HHHHhccC
Confidence 467999999999999999997654 79999999 9999999999998875 457777764433200 011111
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++||+|+.- . ....+...+..+.++|++|
T Consensus 119 ~~~fD~VFiD-a--~K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 119 EGQFDFVFID-A--DKRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp TTSEEEEEEE-S--TGGGHHHHHHHHHHHEEEE
T ss_pred CCceeEEEEc-c--cccchhhHHHHHhhhccCC
Confidence 2479999983 2 3457888888899999997
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-07 Score=78.92 Aligned_cols=109 Identities=20% Similarity=0.135 Sum_probs=71.4
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHH-HHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTN-LQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~-~~~n~~~n 150 (282)
.+++++..|...+.... ...++++|||+|||||.++..++..++.+|+++|. +.++.. ++.+..-
T Consensus 55 ~vsr~~~kL~~~l~~~~------------~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v- 121 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFN------------IDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERV- 121 (228)
T ss_pred hhhhhHHHHHHHHHhcC------------CCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCe-
Confidence 57899999999997754 23568899999999999999998765679999999 766654 3332110
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.. .....+..++|.+.. .....+|+++++-. .++..+..+++++
T Consensus 122 ---~~--~~~~ni~~~~~~~~~-----~d~~~~DvsfiS~~--------~~l~~i~~~l~~~ 165 (228)
T TIGR00478 122 ---KV--LERTNIRYVTPADIF-----PDFATFDVSFISLI--------SILPELDLLLNPN 165 (228)
T ss_pred ---eE--eecCCcccCCHhHcC-----CCceeeeEEEeehH--------hHHHHHHHHhCcC
Confidence 00 011122234444421 11236888887533 3577888888874
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-07 Score=77.76 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=103.7
Q ss_pred hHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH-HHHhcccc-
Q 023457 77 AATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQF-NVDANAGL- 153 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~-n~~~n~~~- 153 (282)
....|.+|+.... ..++.+||..|||.|.-.+.+|. .|.+|+++|+ +.+++.+.+ +.......
T Consensus 22 ~~p~L~~~~~~l~-------------~~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~ 87 (218)
T PF05724_consen 22 PNPALVEYLDSLA-------------LKPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFEENNLEPTVTS 87 (218)
T ss_dssp STHHHHHHHHHHT-------------TSTSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHHHCTTEEECTT
T ss_pred CCHHHHHHHHhcC-------------CCCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHHHhccCCCccc
Confidence 3677888887632 23467999999999999999984 5789999999 888887632 22111100
Q ss_pred c----ccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCcc--CCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 154 I----SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVV--YHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 154 ~----~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~l--y~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
. .....++.+..-|+-..... ..++||+|+=.-++ -.++......+.+.++|+|+ |..++++..
T Consensus 88 ~~~~~~~~~~~i~~~~gDfF~l~~~----~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~------g~~lLi~l~ 157 (218)
T PF05724_consen 88 VGGFKRYQAGRITIYCGDFFELPPE----DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG------GRGLLITLE 157 (218)
T ss_dssp CTTEEEETTSSEEEEES-TTTGGGS----CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE------EEEEEEEEE
T ss_pred ccceeeecCCceEEEEcccccCChh----hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC------CcEEEEEEE
Confidence 0 01234566666555442111 12479999964443 35678899999999999998 563333322
Q ss_pred -e-cCc--c----cHHHHHHHHhhcCceEEEcccCCCC---------CcccceEEEEEeee
Q 023457 228 -L-RRW--K----KDSVFFKKAKKLFDVETIHADLPCN---------GARVGVVVYRMTGK 271 (282)
Q Consensus 228 -~-~~~--~----~~~~f~~~~~~~f~ve~v~~~~~~~---------~~~~~~~v~~~~~~ 271 (282)
. ... + ......+.+..+|+++.+....... .....-.+|+++||
T Consensus 158 ~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 218 (218)
T PF05724_consen 158 YPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEEDSIEEEPRFKSWGLSRFREKVYVLRRK 218 (218)
T ss_dssp S-CSCSSSSS----HHHHHHHHTTTEEEEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEEE-
T ss_pred cCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecccccccccchhhcCcCceeEEEEEEEcC
Confidence 1 111 1 1456666667889988776442221 12233478888875
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=80.63 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV- 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~- 179 (282)
.+.++|||||+|+|..++.+|... .++|+.+|. ++..+.+++|++.++. .+++.+...+..+ .++..
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e----~L~~l~ 187 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAE----SLKSMI 187 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHH----HHHHHH
Confidence 457899999999999999998655 368999999 9999999999999885 3466666533222 12211
Q ss_pred ----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 ----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|+.- . ....+...++.+.++|++|
T Consensus 188 ~~~~~~~FD~VFID-a--~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 188 QNGEGSSYDFAFVD-A--DKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred hcccCCCCCEEEEC-C--CHHHHHHHHHHHHHhcCCC
Confidence 3589999983 2 2456788899999999998
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=76.56 Aligned_cols=99 Identities=24% Similarity=0.285 Sum_probs=70.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR- 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~- 181 (282)
..|.++|||-||+|.+|+.++.+++..++++|. ..++..+++|++.-+. ..++.+..-|-.. -+.....
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~----~L~~~~~~ 112 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALR----ALKQLGTR 112 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHH----HHHhcCCC
Confidence 569999999999999999999888899999999 9999999999987653 2344444322211 1122223
Q ss_pred -CccEEEEcCccCCCCCHHHHHHHHH----HHHhcC
Q 023457 182 -EFDVILASDVVYHDHLFDPLLVTLR----LFLNSG 212 (282)
Q Consensus 182 -~fD~Ii~sd~ly~~~~~~~ll~~l~----~ll~~g 212 (282)
.||+|+. |+-|+....+..+..+. .+|+++
T Consensus 113 ~~FDlVfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~ 147 (187)
T COG0742 113 EPFDLVFL-DPPYAKGLLDKELALLLLEENGWLKPG 147 (187)
T ss_pred CcccEEEe-CCCCccchhhHHHHHHHHHhcCCcCCC
Confidence 4999998 77777666643333333 457776
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.8e-07 Score=81.44 Aligned_cols=134 Identities=19% Similarity=0.101 Sum_probs=87.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++||++-|=||..|+.+|..++++||.+|. ..+++.+++|++.|+.. ..+..+.+.|.-+. .........+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~-l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKW-LRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHH-HHHHHhcCCcc
Confidence 49999999999999999998555559999999 89999999999999963 22333333221110 00111124589
Q ss_pred cEEEEcCccCCC---------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-----hcCceEE
Q 023457 184 DVILASDVVYHD---------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-----KLFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-----~~f~ve~ 249 (282)
|+||.-++-|.. .++..++..+.++|+|| |.+++..++ +. -....|.+.+. .+..++.
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg------G~l~~~s~~-~~-~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG------GTLVTSSCS-RH-FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC------CEEEEEecC-Cc-cCHHHHHHHHHHHHHhcCCcEEE
Confidence 999997666532 35778889999999998 444443332 32 23455555443 2445555
Q ss_pred Ec
Q 023457 250 IH 251 (282)
Q Consensus 250 v~ 251 (282)
+.
T Consensus 364 ~~ 365 (393)
T COG1092 364 IE 365 (393)
T ss_pred ee
Confidence 53
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.3e-07 Score=78.96 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=66.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+++||+||||+|..+..+++.. ..+|+++|+ +.+++.+++++....... ...++.+.. .+. ...+.....+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~--~~~~v~i~~---~D~-~~~l~~~~~~y 146 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY--DDPRVDLQI---DDG-FKFLADTENTF 146 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc--cCCceEEEE---Cch-HHHHHhCCCCc
Confidence 5599999999999988887554 368999999 999999998875432111 123444443 221 01112224689
Q ss_pred cEEEEcCc--cCCCCC--HHHHHHHHHHHHhcC
Q 023457 184 DVILASDV--VYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~--ly~~~~--~~~ll~~l~~ll~~g 212 (282)
|+|++... ...... ...+++.+.++|+||
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 99998432 211112 467889999999998
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.8e-07 Score=79.30 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+++||+||||+|..+..+++.. ..+|+++|+ +.+++.+++++....... ....++.+..-|... -+.....+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d~rv~v~~~Da~~----~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDDPRVELVIGDGIK----FVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccCCceEEEECchHH----HHhhCCCc
Confidence 46799999999999999887553 369999999 999999999875422100 013455555433222 12222468
Q ss_pred ccEEEEc--CccCCCC--CHHHHHHHHHHHHhcC
Q 023457 183 FDVILAS--DVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~s--d~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
||+|++. +...... ....+++.+++.|+++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 9999983 2221111 1367788999999998
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=75.06 Aligned_cols=110 Identities=15% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCC---------CcEEEE-------
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRG---------GSVHVA------- 164 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~---------~~v~~~------- 164 (282)
.+.++.+|||||-+|.+++.+|+..+ ..|+++|+ +..+..|++++..-.-...... ....+.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 46788999999999999999998876 57999999 9999999998874321100000 000000
Q ss_pred --EEE-----eCCCC------ccchhhcCCCccEEEEcCccC------CCCCHHHHHHHHHHHHhcC
Q 023457 165 --PLR-----WGEAE------ANDVAVVGREFDVILASDVVY------HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 165 --~ld-----~~~~~------~~~~~~~~~~fD~Ii~sd~ly------~~~~~~~ll~~l~~ll~~g 212 (282)
..+ |.... ..-+......||+|+|-.+.- +.+-+..+++.|.++|.||
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 000 00000 000111256899999965532 3456889999999999998
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=80.96 Aligned_cols=124 Identities=18% Similarity=0.087 Sum_probs=81.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++||++-|=||..|+.++..++.+|+.+|. ..+++.+++|+..|+.. ..++.+...|.-+. ...+. ...+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~-l~~~~-~~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKF-LKRLK-KGGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHH-HHHHH-HTT-E
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHH-HHHHh-cCCCC
Confidence 38899999999999999988555568999999 89999999999999963 34566665443320 00111 24689
Q ss_pred cEEEEcCccCCC------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYHD------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~~------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
|+||+-.+-|.. .++..++..+.+++++| +.++++...... ....|.+.+.
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g-------G~l~~~scs~~i-~~~~l~~~~~ 253 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG-------GLLLTCSCSHHI-SPDFLLEAVA 253 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE-------EEEEEEE--TTS--HHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC-------CEEEEEcCCccc-CHHHHHHHHH
Confidence 999997665532 24677888888999997 545555443333 3345555443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=72.86 Aligned_cols=120 Identities=19% Similarity=0.184 Sum_probs=79.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...-|||||||+|+.+-.+. .-+-..+++|+ +.||+.+...--. + .+...|.+. .++...++|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~e-g----------dlil~DMG~----GlpfrpGtF 113 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVERELE-G----------DLILCDMGE----GLPFRPGTF 113 (270)
T ss_pred CCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhhh-c----------CeeeeecCC----CCCCCCCcc
Confidence 45679999999999998885 44578899999 9999998752111 1 234446665 345557899
Q ss_pred cEEEEcCccCC---------CC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH-hhcCce
Q 023457 184 DVILASDVVYH---------DH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA-KKLFDV 247 (282)
Q Consensus 184 D~Ii~sd~ly~---------~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~-~~~f~v 247 (282)
|-+|+...+.+ .+ -+-.++.+|..+++++ ++.++-.+. .+....+.....+ ..||.=
T Consensus 114 Dg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg------~raV~QfYp-en~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 114 DGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG------ARAVLQFYP-ENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred ceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccC------ceeEEEecc-cchHHHHHHHHHHHhhccCC
Confidence 99987544432 11 1445788899999998 576665543 4444444444444 357743
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-07 Score=73.63 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=61.0
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+..|+.++|||||+|.+++.++...+..|+++|+ +++++..++|.+.-.. ++.+.+-++.+ +....
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------qidlLqcdild-----le~~~ 112 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------QIDLLQCDILD-----LELKG 112 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------hhheeeeeccc-----hhccC
Confidence 35789999999999999998887545579999999 9999999999987543 23444444443 22224
Q ss_pred CCccEEEEcCccC
Q 023457 181 REFDVILASDVVY 193 (282)
Q Consensus 181 ~~fD~Ii~sd~ly 193 (282)
+.||..+.+..+-
T Consensus 113 g~fDtaviNppFG 125 (185)
T KOG3420|consen 113 GIFDTAVINPPFG 125 (185)
T ss_pred CeEeeEEecCCCC
Confidence 7899999988875
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-07 Score=77.97 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=71.9
Q ss_pred cEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 108 NILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|||+|||.|-....+.+..+ -.|.+.|. +.+++.++++...+. .++.....|...... .-+...+.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~-~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSL-KEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-------hhhcccceeccchhc-cCCCCcCcc
Confidence 899999999999888864443 37999999 999999999877654 234444444443211 112235789
Q ss_pred cEEEEcCccC--CCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVY--HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g 212 (282)
|+|.+.-++- +++.+...+..+.++++||
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 9999877765 4667899999999999998
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.3e-07 Score=84.14 Aligned_cols=97 Identities=26% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+++.||++|||+|.++..+++++ +.+|++++- +.+...++..+..|+ +.++|++..-|..+...
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-----w~~~V~vi~~d~r~v~l----- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-----WGDKVTVIHGDMREVEL----- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-----TTTTEEEEES-TTTSCH-----
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-----CCCeEEEEeCcccCCCC-----
Confidence 47899999999999998887554 369999999 888888888778887 47789998866655221
Q ss_pred cCCCccEEEEc--CccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 VGREFDVILAS--DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~s--d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+.|+||+- ..+-..+.....+....++|+|+
T Consensus 256 -pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 256 -PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp -SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred -CCceeEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence 3589999973 22223446777888889999987
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=74.67 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=72.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
+.++|||||+++|.-++.+|...+ ++|+.+|. ++..+.++.++...+. .+++.+...+..+ .++..
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~~G~a~e----~L~~l~~ 149 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFREGPALP----VLDQMIE 149 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeccHHH----HHHHHHh
Confidence 467999999999999999986653 69999999 9999999999998775 4567666544322 22221
Q ss_pred ----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 ----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++||+|+.- . +...+...+..+.+++++|
T Consensus 150 ~~~~~~~fD~iFiD-a--dK~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 150 DGKYHGTFDFIFVD-A--DKDNYINYHKRLIDLVKVG 183 (247)
T ss_pred ccccCCcccEEEec-C--CHHHhHHHHHHHHHhcCCC
Confidence 2589999982 2 2456778888888999998
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=68.59 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=60.7
Q ss_pred HHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCH-HHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccC
Q 023457 80 TLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGL-VGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLR 157 (282)
Q Consensus 80 ~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~-~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~ 157 (282)
.+++||..+.. ..++++|||||||+|. ++..++ ..+..|+++|+ +.+++.++.+.
T Consensus 3 ~i~~~l~~~~~------------~~~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~---------- 59 (134)
T PRK04148 3 TIAEFIAENYE------------KGKNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLG---------- 59 (134)
T ss_pred HHHHHHHHhcc------------cccCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhC----------
Confidence 36777766542 2346799999999996 888887 56799999999 88877776531
Q ss_pred CCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhc
Q 023457 158 GGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNS 211 (282)
Q Consensus 158 ~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~ 211 (282)
+.+..-|+.+.+.. .-..+|+|.+.- -...+...+.++.+.
T Consensus 60 ---~~~v~dDlf~p~~~----~y~~a~liysir------pp~el~~~~~~la~~ 100 (134)
T PRK04148 60 ---LNAFVDDLFNPNLE----IYKNAKLIYSIR------PPRDLQPFILELAKK 100 (134)
T ss_pred ---CeEEECcCCCCCHH----HHhcCCEEEEeC------CCHHHHHHHHHHHHH
Confidence 34455555542211 124577777742 334444444444443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-06 Score=76.65 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=64.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH---hcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD---ANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~---~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..++||+||||+|.....+++..+ .+|+++|+ +++++.++..-. .|... ....++.+..-|-.. -+...
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~--~~DpRV~vvi~Da~~----fL~~~ 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA--FFDNRVNVHVCDAKE----FLSSP 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc--CCCCceEEEECcHHH----HHHhc
Confidence 356999999999998877765433 69999999 999999986211 11110 013456555433222 12223
Q ss_pred CCCccEEEEcCccCCC-----CC-HHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHD-----HL-FDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~-----~~-~~~ll~~l~~ll~~g 212 (282)
..+||+||+. +.... .. -..+++.+++.|+||
T Consensus 224 ~~~YDVIIvD-l~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 224 SSLYDVIIID-FPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred CCCccEEEEc-CCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 5689999984 22110 11 256889999999998
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=80.03 Aligned_cols=92 Identities=24% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||++||+|..++.+|...+ .+|+++|+ +.+++.+++|++.|+.. .+.+...|... -+.. ...|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~------~~~v~~~Da~~----~l~~-~~~f 126 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE------NEKVFNKDANA----LLHE-ERKF 126 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------ceEEEhhhHHH----HHhh-cCCC
Confidence 45899999999999999986654 48999999 99999999999999852 23344333221 1111 3579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|+. |+. .....++....+.++++
T Consensus 127 D~V~l-DP~---Gs~~~~l~~al~~~~~~ 151 (382)
T PRK04338 127 DVVDI-DPF---GSPAPFLDSAIRSVKRG 151 (382)
T ss_pred CEEEE-CCC---CCcHHHHHHHHHHhcCC
Confidence 99999 553 44567777755667776
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=77.40 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.++..++... .+|+++|+ +.+++.+++++.. .++.+...|+.+.. ++ .-.+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~---~~--~~~~ 106 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVD---LS--ELQP 106 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCC---HH--HcCc
Confidence 47799999999999999998664 59999999 9999999876632 35666766665521 11 1115
Q ss_pred cEEEEcCcc
Q 023457 184 DVILASDVV 192 (282)
Q Consensus 184 D~Ii~sd~l 192 (282)
+.|+++.+.
T Consensus 107 ~~vv~NlPY 115 (272)
T PRK00274 107 LKVVANLPY 115 (272)
T ss_pred ceEEEeCCc
Confidence 888888664
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=73.08 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=71.6
Q ss_pred cEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch---hhcCCC
Q 023457 108 NILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV---AVVGRE 182 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~---~~~~~~ 182 (282)
+|||||||||-.+..+|..++ -+-.-+|+ +..+..++..+...+.. .-.....+|......... ......
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-----Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-----NVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-----ccCCCeEeecCCCCCccccccccCCCC
Confidence 699999999999999998876 46678999 77778888877765532 112233455444211110 112468
Q ss_pred ccEEEEcCccCC--CCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYH--DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g 212 (282)
||.|+++.++|- ....+.+++...++|++|
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 999999999985 346789999999999998
|
The function of this family is unknown. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-06 Score=81.14 Aligned_cols=104 Identities=20% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccc-cCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLIS-LRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~-~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+.++||+||||+|.....+++... .+|+++|+ +++++.+++|...+..... ....++++..-|-.+ .+....+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~----~l~~~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN----WLRKLAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH----HHHhCCC
Confidence 467999999999999988875544 69999999 9999999985322111000 012456555433221 1222346
Q ss_pred CccEEEEcCccCCCC-----CHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDH-----LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g 212 (282)
+||+|++.-.-.... ....+++.++++|+|+
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 899999952211111 1246888999999998
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=72.38 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=79.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~ 181 (282)
..++||+||||.|.+...+++... .+|+++|+ +.+++.+++......... ...++++..-|-.. -+... ..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~--~dpRv~vi~~Da~~----~l~~~~~~ 164 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGF--DDPRVNLHIGDGVE----FLKNAPEG 164 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcccc--CCCceEEEEChHHH----HHhhccCC
Confidence 467999999999999988875533 68999999 899999998775421111 23466666533211 11111 35
Q ss_pred CccEEEEcCccCC--CC---CHHHHHHHHHHHHhcCCCCCCCceEEEEEEe-ecCcccHHHHHHHHhhcC
Q 023457 182 EFDVILASDVVYH--DH---LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH-LRRWKKDSVFFKKAKKLF 245 (282)
Q Consensus 182 ~fD~Ii~sd~ly~--~~---~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~-~~~~~~~~~f~~~~~~~f 245 (282)
+||+||+ |..-. .. ....+++.+++.|+|+ |.++..+.. .........+...++.-|
T Consensus 165 ~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pg------Gvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 165 TYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPG------GVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred CCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCC------cEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 7999998 33211 11 1356889999999998 443332211 112223455666677777
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=74.49 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=55.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.++..++.. +.+|+++|+ +.+++.++.++.. ..++.+...|+.+. . ...
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~-----~--~~~ 91 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKV-----D--LPE 91 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccC-----C--chh
Confidence 35789999999999999999865 679999999 9999999887753 12566666555431 1 135
Q ss_pred ccEEEEcCccC
Q 023457 183 FDVILASDVVY 193 (282)
Q Consensus 183 fD~Ii~sd~ly 193 (282)
||.|+++.+.+
T Consensus 92 ~d~Vv~NlPy~ 102 (258)
T PRK14896 92 FNKVVSNLPYQ 102 (258)
T ss_pred ceEEEEcCCcc
Confidence 79999987754
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.2e-06 Score=72.42 Aligned_cols=88 Identities=25% Similarity=0.222 Sum_probs=68.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
....++||||+|-|-++..++ ..-.+|++|+. +.|...+++ .+ --.+...+|.+ .+.+
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~----kg--------~~vl~~~~w~~--------~~~~ 151 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSK----KG--------FTVLDIDDWQQ--------TDFK 151 (265)
T ss_pred ccCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHh----CC--------CeEEehhhhhc--------cCCc
Confidence 456789999999999999997 44588999999 777665554 22 11223344554 1357
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|.|-.++-.-..+..+++.|++.|+|+
T Consensus 152 fDvIscLNvLDRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 152 FDVISCLNVLDRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred eEEEeehhhhhccCCHHHHHHHHHHHhCCC
Confidence 999999999988888999999999999998
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=78.05 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
+.+|||+.||+|..|+.+++.. ...|++.|+ +.+++.+++|++.|+. .++.+...|... -+......
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~----~l~~~~~~ 114 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAAN----VLRYRNRK 114 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHH----HHHHhCCC
Confidence 4589999999999999999763 479999999 9999999999999874 234444433322 11222357
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|.. |+ |. ....++..+.+.++++
T Consensus 115 fDvIdl-DP-fG--s~~~fld~al~~~~~~ 140 (374)
T TIGR00308 115 FHVIDI-DP-FG--TPAPFVDSAIQASAER 140 (374)
T ss_pred CCEEEe-CC-CC--CcHHHHHHHHHhcccC
Confidence 999998 77 43 3356777777778776
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=72.60 Aligned_cols=94 Identities=19% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+|.+|+|+.||.|..++.+|+. .++.|++.|+ |.+++.+++|+..|+. .+++.+...|... +.. ..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~-----~~~-~~ 168 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDARE-----FLP-EG 168 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG---------TT
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHH-----hcC-cc
Confidence 35889999999999999999863 3478999999 9999999999999985 4567777766544 221 57
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||.|+++.+- ....++..+..+++++
T Consensus 169 ~~drvim~lp~----~~~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 169 KFDRVIMNLPE----SSLEFLDAALSLLKEG 195 (200)
T ss_dssp -EEEEEE--TS----SGGGGHHHHHHHEEEE
T ss_pred ccCEEEECChH----HHHHHHHHHHHHhcCC
Confidence 89999997543 3335666777788776
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-05 Score=70.99 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=87.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
-.+|..|||=-||||..-+.+. ..|++|+++|+ ..|+.-++.|+..-+. .+......+| ...++....
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~~~~D-----a~~lpl~~~ 263 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGI-----EDYPVLKVLD-----ATNLPLRDN 263 (347)
T ss_pred cccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCc-----CceeEEEecc-----cccCCCCCC
Confidence 4578899999999999999986 77899999999 8999999999997652 1111111112 223332234
Q ss_pred CccEEEEcCccCCCC----------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 182 EFDVILASDVVYHDH----------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~----------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
.+|-|++ |+-|... .+..+++++.+.|++| |.++|.+. ...+.+..+.+|++....
T Consensus 264 ~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g------G~~vf~~p-------~~~~~~~~~~~f~v~~~~ 329 (347)
T COG1041 264 SVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPG------GRIVFAAP-------RDPRHELEELGFKVLGRF 329 (347)
T ss_pred ccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcC------cEEEEecC-------CcchhhHhhcCceEEEEE
Confidence 6998887 7777432 3778899999999998 56666554 122234445689887655
Q ss_pred ccC
Q 023457 252 ADL 254 (282)
Q Consensus 252 ~~~ 254 (282)
...
T Consensus 330 ~~~ 332 (347)
T COG1041 330 TMR 332 (347)
T ss_pred EEe
Confidence 443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.7e-06 Score=75.24 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=57.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++++..++. ..++.+..-|+... + ...|
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~---~----~~~~ 102 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKT---E----FPYF 102 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhh---c----cccc
Confidence 5779999999999999998754 678999999 9999999999876542 24566666554431 1 2468
Q ss_pred cEEEEcCccC
Q 023457 184 DVILASDVVY 193 (282)
Q Consensus 184 D~Ii~sd~ly 193 (282)
|+|+++-+.|
T Consensus 103 d~VvaNlPY~ 112 (294)
T PTZ00338 103 DVCVANVPYQ 112 (294)
T ss_pred CEEEecCCcc
Confidence 9888765544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-06 Score=73.64 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..++|||||+|+|..++.++++.+ .+++..|+|.+++.+++ .+++.+...|+-+ .+ +. +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~------------~~rv~~~~gd~f~----~~---P~-~ 159 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE------------ADRVEFVPGDFFD----PL---PV-A 159 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH------------TTTEEEEES-TTT----CC---SS-E
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc------------ccccccccccHHh----hh---cc-c
Confidence 346899999999999999987776 69999999999888877 3478888877654 22 23 9
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
|+|+.+.++|+.. ....+++.+...++||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 9999999998644 5678999999999975
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.1e-05 Score=69.25 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
-+.....|.+++...... .++ +||||-||+|..|+.+| ....+|+++|. +.+++.+++|+..|+.
T Consensus 178 N~~~~~~l~~~~~~~l~~------------~~~-~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i 243 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDL------------SKG-DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI 243 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-------------TT-EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHhhc------------CCC-cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC
Confidence 445556666666554421 223 79999999999999998 55689999999 9999999999999985
Q ss_pred ccccCCCcEEEEEEEeCCCCc-----cch------hhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceE
Q 023457 153 LISLRGGSVHVAPLRWGEAEA-----NDV------AVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKM 221 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~-----~~~------~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~ 221 (282)
.++.+...+-.+... ..+ ......+|+||. |+-.. ...+.+++.+. +.. ++
T Consensus 244 ------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil-DPPR~-G~~~~~~~~~~---~~~-------~i 305 (352)
T PF05958_consen 244 ------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL-DPPRA-GLDEKVIELIK---KLK-------RI 305 (352)
T ss_dssp -------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE----TT--SCHHHHHHHH---HSS-------EE
T ss_pred ------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE-cCCCC-CchHHHHHHHh---cCC-------eE
Confidence 356665543221100 000 011236898887 33221 12344555443 333 77
Q ss_pred EEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 222 NFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 222 ~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
+++++... +..+=+..+.++|.++.+.
T Consensus 306 vYvSCnP~---tlaRDl~~L~~~y~~~~v~ 332 (352)
T PF05958_consen 306 VYVSCNPA---TLARDLKILKEGYKLEKVQ 332 (352)
T ss_dssp EEEES-HH---HHHHHHHHHHCCEEEEEEE
T ss_pred EEEECCHH---HHHHHHHHHhhcCEEEEEE
Confidence 88776533 3222223334689998765
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=64.17 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=44.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
++.+|||||||+|.++..++.. +..|+++|. +.+++.++.+... ..++.+...|+..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~ 86 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALK 86 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhc
Confidence 4779999999999999999855 467999999 9999998877642 2355666555444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.3e-05 Score=68.70 Aligned_cols=95 Identities=22% Similarity=0.127 Sum_probs=71.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..|.+|||+-||.|..++.+|+....+|+++|+ |.+++.+++|+.+|+. .+.+.....|-.. +......
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~re-----v~~~~~~ 256 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDARE-----VAPELGV 256 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHH-----hhhcccc
Confidence 358999999999999999999776666999999 9999999999999995 4445555544332 2222267
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||-|+++.+- ....++....++++++
T Consensus 257 aDrIim~~p~----~a~~fl~~A~~~~k~~ 282 (341)
T COG2520 257 ADRIIMGLPK----SAHEFLPLALELLKDG 282 (341)
T ss_pred CCEEEeCCCC----cchhhHHHHHHHhhcC
Confidence 9999997554 3345555666677766
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00011 Score=71.24 Aligned_cols=155 Identities=9% Similarity=-0.010 Sum_probs=90.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~ 174 (282)
...+|||.|||+|...+.++.... ..+++.|+ +.++..++.|+...+. ..+.+...++......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 456999999999999988875552 47899999 9999999998876541 1122222222111000
Q ss_pred chhhcCCCccEEEEcCccCCCCC----------------------------------------------HHHHH-HHHHH
Q 023457 175 DVAVVGREFDVILASDVVYHDHL----------------------------------------------FDPLL-VTLRL 207 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~~~~----------------------------------------------~~~ll-~~l~~ 207 (282)
......+.||+||++.+.-.... +..++ +...+
T Consensus 105 ~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~ 184 (524)
T TIGR02987 105 NIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLE 184 (524)
T ss_pred ccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHH
Confidence 00111357999999977643210 11122 45567
Q ss_pred HHhcCCCCCCCceEEEEEEeecCc-ccHHHHHHHHhhcCceEEEccc----CCCCCcccceEEEEEeee
Q 023457 208 FLNSGEPEPKKKKMNFVMAHLRRW-KKDSVFFKKAKKLFDVETIHAD----LPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 208 ll~~g~~~~~~g~~~il~~~~~~~-~~~~~f~~~~~~~f~ve~v~~~----~~~~~~~~~~~v~~~~~~ 271 (282)
+++++ |.+.++.+...-. .....|.+.+.+.+.+..+... ..+.+......++.+.+.
T Consensus 185 lL~~~------G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 185 IANKN------GYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred hcCCC------CEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCCCcceEEEEEECC
Confidence 78887 7888877642221 2234555555555666655432 123334444566666654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.9e-05 Score=62.35 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=76.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+..|-|+|||-+.++..+. ...+|...|+ +. ...|. .-|.. ..+..+...|
T Consensus 73 ~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~-------------------n~~Vt--acdia-----~vPL~~~svD 124 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP-------------------NPRVT--ACDIA-----NVPLEDESVD 124 (219)
T ss_dssp TS-EEEES-TT-HHHHH----S---EEEEESS-S-------------------STTEE--ES-TT-----S-S--TT-EE
T ss_pred CEEEEECCCchHHHHHhcc--cCceEEEeeccCC-------------------CCCEE--EecCc-----cCcCCCCcee
Confidence 5699999999999884432 2356999998 42 12222 22322 3344467899
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh-cCceEEEcccCCCCCcccce
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK-LFDVETIHADLPCNGARVGV 263 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f~ve~v~~~~~~~~~~~~~ 263 (282)
++|.+-.+-. .++..++....|+|+++ +.+.++--..|......|.+.+.. ||++..-. ....-+
T Consensus 125 v~VfcLSLMG-Tn~~~fi~EA~RvLK~~-------G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d------~~n~~F 190 (219)
T PF05148_consen 125 VAVFCLSLMG-TNWPDFIREANRVLKPG-------GILKIAEVKSRFENVKQFIKALKKLGFKLKSKD------ESNKHF 190 (219)
T ss_dssp EEEEES---S-S-HHHHHHHHHHHEEEE-------EEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--------STTE
T ss_pred EEEEEhhhhC-CCcHHHHHHHHheeccC-------cEEEEEEecccCcCHHHHHHHHHHCCCeEEecc------cCCCeE
Confidence 9998766543 47889999999999998 666667666777778999998875 88877643 234567
Q ss_pred EEEEEeeecCC
Q 023457 264 VVYRMTGKAKS 274 (282)
Q Consensus 264 ~v~~~~~~~~~ 274 (282)
.+|.|.|....
T Consensus 191 ~~f~F~K~~~~ 201 (219)
T PF05148_consen 191 VLFEFKKIRKK 201 (219)
T ss_dssp EEEEEEE-SSS
T ss_pred EEEEEEEcCcc
Confidence 88888887643
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.2e-05 Score=71.29 Aligned_cols=125 Identities=18% Similarity=0.118 Sum_probs=83.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+=||.|..|+.+| ....+|+++++ +++++.+++|++.|+. .++.+...+-....... .....|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~--~~~~~~ 363 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAW--WEGYKP 363 (432)
T ss_pred CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhc--cccCCC
Confidence 46799999999999999998 55689999999 9999999999999985 24666654433211100 013578
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
|+||.-.+= ...-+.+++.+.++-.+ +++++++ +..+..+-+..+. .++.++++.
T Consensus 364 d~VvvDPPR--~G~~~~~lk~l~~~~p~--------~IvYVSC---NP~TlaRDl~~L~~~gy~i~~v~ 419 (432)
T COG2265 364 DVVVVDPPR--AGADREVLKQLAKLKPK--------RIVYVSC---NPATLARDLAILASTGYEIERVQ 419 (432)
T ss_pred CEEEECCCC--CCCCHHHHHHHHhcCCC--------cEEEEeC---CHHHHHHHHHHHHhCCeEEEEEE
Confidence 999984331 12334666666554432 5666665 4445555555444 577788776
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-05 Score=68.00 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=67.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..++||.||+|.|.....+++.. ..+|+++|+ +.+++.+++....+.... ...++++..-|-.. -+.....+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~--~dprv~v~~~Da~~----~L~~~~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF--CDKRLELIINDARA----ELEKRDEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc--cCCceEEEEChhHH----HHhhCCCC
Confidence 46799999999999998877543 368999999 999999998876543211 13456555432211 12223568
Q ss_pred ccEEEEcCccCC----CC---CHHHHHH-HHHHHHhcC
Q 023457 183 FDVILASDVVYH----DH---LFDPLLV-TLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~----~~---~~~~ll~-~l~~ll~~g 212 (282)
||+|++ |+.-. +. .-..+++ .+++.|+++
T Consensus 177 yDvIi~-D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 177 FDVIIG-DLADPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred ccEEEe-cCCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence 999997 33210 01 1245676 889999998
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00023 Score=64.32 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+|+++|||||++|..+..+++. +.+|+++|...+-..+ .. ..+|....-+-... .+ ....+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~~~L----~~--------~~~V~h~~~d~fr~----~p-~~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMAQSL----MD--------TGQVEHLRADGFKF----RP-PRKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcCHhh----hC--------CCCEEEEeccCccc----CC-CCCCC
Confidence 57899999999999999999754 6799999984333333 21 33444444322111 11 14579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE---eecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA---HLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~---~~~~~~~~~~f~~~~~ 242 (282)
|+|++ |++ ..+..+.+.+..++..|- .+..|+.- .+.++.....+++.+.
T Consensus 272 DwvVc-Dmv---e~P~rva~lm~~Wl~~g~-----cr~aIfnLKlpmk~r~~~v~~~l~~i~ 324 (357)
T PRK11760 272 DWLVC-DMV---EKPARVAELMAQWLVNGW-----CREAIFNLKLPMKKRYEEVRQCLELIE 324 (357)
T ss_pred CEEEE-ecc---cCHHHHHHHHHHHHhcCc-----ccEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 99888 776 345577777788887762 33334332 3466666666666544
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.3e-05 Score=69.75 Aligned_cols=86 Identities=17% Similarity=0.323 Sum_probs=50.2
Q ss_pred CCcEEEeCCCCC-HHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTG-LVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG-~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..++||||+|.. ...+..++..+-+++|||+ +..++.+++|++.| .+ ..++.+....=...-...+......
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEEEcCCccccchhhhcccce
Confidence 568999999975 4466666666789999999 99999999999999 64 5677776532111001111122458
Q ss_pred ccEEEEcCccCCCC
Q 023457 183 FDVILASDVVYHDH 196 (282)
Q Consensus 183 fD~Ii~sd~ly~~~ 196 (282)
||+.+|+.++|...
T Consensus 178 ~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEEE-----SS-
T ss_pred eeEEecCCccccCh
Confidence 99999999999654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.5e-05 Score=61.62 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=76.1
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.+=|+|..||+-+.... ....|+-|||+|.|||..+-.+.+++ ...++++++ ++....+.+..
T Consensus 28 aI~PsSs~lA~~M~s~I------------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-- 93 (194)
T COG3963 28 AILPSSSILARKMASVI------------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-- 93 (194)
T ss_pred eecCCcHHHHHHHHhcc------------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--
Confidence 35677777888775543 23468899999999999999887554 268999999 88877776532
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCC--HHHHHHHHHHHHhcC
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g 212 (282)
..+.+.+.|-.+.+..--....+.||.||++-.+-..+. --.+++.+...+..|
T Consensus 94 ---------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 94 ---------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred ---------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 223333322222110011123568999999877665443 346777777778777
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=71.26 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=75.3
Q ss_pred ceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCH-HHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 72 FKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGL-VGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 72 ~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~-~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.--|--+.+...|+..... ..++.+|||||||-|. +.-+. ......++++|+ ...++.+++....
T Consensus 41 fNNwvKs~LI~~~~~~~~~------------~~~~~~VLDl~CGkGGDL~Kw~-~~~i~~~vg~Dis~~si~ea~~Ry~~ 107 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQ------------NRPGLTVLDLCCGKGGDLQKWQ-KAKIKHYVGIDISEESIEEARERYKQ 107 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCC------------TTTT-EEEEET-TTTTTHHHHH-HTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhc------------cCCCCeEEEecCCCchhHHHHH-hcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4568888888888864332 1268899999999765 55444 455589999999 8899999887732
Q ss_pred cccccccCCCcEEEEE-EEeCCCCccchh----hcCCCccEEEEcCccCC----CCCHHHHHHHHHHHHhcC
Q 023457 150 NAGLISLRGGSVHVAP-LRWGEAEANDVA----VVGREFDVILASDVVYH----DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~-ld~~~~~~~~~~----~~~~~fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~~g 212 (282)
..........+..+.. ....+.....+. ....+||+|=+--.+|+ .+....+++++...|+||
T Consensus 108 ~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 108 LKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp HHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred hccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 1110000011111211 122221111111 11258999999887774 345677999999999998
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.02 E-value=6e-05 Score=63.82 Aligned_cols=144 Identities=14% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+.||.|||.|.++-.+......+|..+|. +..++.+++.+.... .....+...- .+++.....+|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~------~~v~~~~~~g-----LQ~f~P~~~~Y 123 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN------PRVGEFYCVG-----LQDFTPEEGKY 123 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG------CCEEEEEES------GGG----TT-E
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC------CCcceEEecC-----HhhccCCCCcE
Confidence 45699999999999997765455589999999 999999987654421 1112222221 12222224689
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc-------------cHHHHHHHHhh-cCce
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK-------------KDSVFFKKAKK-LFDV 247 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~-------------~~~~f~~~~~~-~f~v 247 (282)
|+|++--|+-|- .++-.+++.++..|+|+ +++++=-.....+ +...|.+.+++ |+.+
T Consensus 124 DlIW~QW~lghLTD~dlv~fL~RCk~~L~~~-------G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 124 DLIWIQWCLGHLTDEDLVAFLKRCKQALKPN-------GVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRL 196 (218)
T ss_dssp EEEEEES-GGGS-HHHHHHHHHHHHHHEEEE-------EEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EE
T ss_pred eEEEehHhhccCCHHHHHHHHHHHHHhCcCC-------cEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEE
Confidence 999998887654 45778999999999997 4444321111000 25666666654 7776
Q ss_pred EEEc--ccCCCCCcccceEEEEE
Q 023457 248 ETIH--ADLPCNGARVGVVVYRM 268 (282)
Q Consensus 248 e~v~--~~~~~~~~~~~~~v~~~ 268 (282)
-.-. ...|.+ =-.|.+|.+
T Consensus 197 v~~~~Q~~fP~~--L~pV~myaL 217 (218)
T PF05891_consen 197 VKEEKQKGFPKE--LYPVRMYAL 217 (218)
T ss_dssp EEEEE-TT--TT--S-EEEEEEE
T ss_pred EEeccccCCCcc--ceEEEEEEe
Confidence 4333 234443 234566655
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00048 Score=65.53 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=84.2
Q ss_pred ceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHH
Q 023457 72 FKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 72 ~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~ 148 (282)
...-++|+..+..|... ..+|.+|||++||.|.=+..+|..++ ..|++.|+ +.-+..+++|++
T Consensus 94 yvQd~sS~l~~~~L~~~--------------~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~ 159 (470)
T PRK11933 94 YIQEASSMLPVAALFAD--------------DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS 159 (470)
T ss_pred EEECHHHHHHHHHhccC--------------CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 34566777767666321 13578999999999999999987664 68999999 889999999999
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchh-hcCCCccEEEE----c--CccCCCC----------------CHHHHHHHH
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGREFDVILA----S--DVVYHDH----------------LFDPLLVTL 205 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~fD~Ii~----s--d~ly~~~----------------~~~~ll~~l 205 (282)
+.+. .++.+...|-.. +. .....||.|+. | .++...+ ....++...
T Consensus 160 r~G~------~nv~v~~~D~~~-----~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A 228 (470)
T PRK11933 160 RCGV------SNVALTHFDGRV-----FGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESA 228 (470)
T ss_pred HcCC------CeEEEEeCchhh-----hhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 8663 234444432211 11 12357999994 2 2222211 125678888
Q ss_pred HHHHhcCCCCCCCceEEEEEEee
Q 023457 206 RLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 206 ~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
.++|+|| |.+++..++.
T Consensus 229 ~~~LkpG------G~LVYSTCT~ 245 (470)
T PRK11933 229 FHALKPG------GTLVYSTCTL 245 (470)
T ss_pred HHHcCCC------cEEEEECCCC
Confidence 8999998 6776665553
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.5e-05 Score=62.88 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=61.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC-
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE- 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~- 182 (282)
+++++|||+|.|.+|+.+|...+ .+|+.+|. ..=+..++.-...-++ .++.+..-.. +++.. ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~Ra-----E~~~~-~~~~ 135 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRA-----EEFGQ-EKKQ 135 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhH-----hhccc-cccc
Confidence 68999999999999999985544 57999998 6555555554444332 2344443222 22221 123
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|.+--+ ..+..++..+..++++|
T Consensus 136 ~D~vtsRAv----a~L~~l~e~~~pllk~~ 161 (215)
T COG0357 136 YDVVTSRAV----ASLNVLLELCLPLLKVG 161 (215)
T ss_pred CcEEEeehc----cchHHHHHHHHHhcccC
Confidence 999998433 46788899999999997
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.4e-05 Score=63.66 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=53.0
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEE
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~I 186 (282)
.|+|+.||.|-.++.+|+ ...+|+++|+ +..++.++.|+..-+. .+++.+..-||.+... .+.. ...||+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~-~~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~-~~~~-~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR-TFDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLK-RLKS-NKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHH-TT-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGG-GB-------SEE
T ss_pred EEEEeccCcCHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHh-hccc-cccccEE
Confidence 699999999999999984 4689999999 9999999999998774 4578888888876111 1110 1128999
Q ss_pred EEcCcc
Q 023457 187 LASDVV 192 (282)
Q Consensus 187 i~sd~l 192 (282)
+++.+.
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998654
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00025 Score=58.89 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CE---------EEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AK---------VTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAE 172 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~---------V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~ 172 (282)
.++..|||--||+|.+-+.+|.... .. +++.|+ +.++..++.|+...+. ...+.+.+.|...
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~-- 99 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDARE-- 99 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGG--
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhh--
Confidence 3577999999999999999885543 23 789999 9999999999988764 4456666655544
Q ss_pred ccchhhcCCCccEEEEcCccCCCC--------CHHHHHHHHHHHHhc
Q 023457 173 ANDVAVVGREFDVILASDVVYHDH--------LFDPLLVTLRLFLNS 211 (282)
Q Consensus 173 ~~~~~~~~~~fD~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~ 211 (282)
++.....+|+||++.+.-... .+..+++.+.+++++
T Consensus 100 ---l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 100 ---LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp ---GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred ---cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 333356899999976654321 234455555555554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=61.86 Aligned_cols=99 Identities=16% Similarity=0.064 Sum_probs=67.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+||||||.|-..+.+|...+ ..++++|+ ...+..+.+.+...+ ..++.+...|.... -..-..++.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~------l~Nv~~~~~da~~~--l~~~~~~~~v 89 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG------LKNVRFLRGDAREL--LRRLFPPGSV 89 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT------TSSEEEEES-CTTH--HHHHSTTTSE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc------ccceEEEEccHHHH--HhhcccCCch
Confidence 33899999999999999997765 68999999 888888777777665 34677766544331 0111124688
Q ss_pred cEEEEc--CccCCCC------CHHHHHHHHHHHHhcC
Q 023457 184 DVILAS--DVVYHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~s--d~ly~~~------~~~~ll~~l~~ll~~g 212 (282)
|-|... |+..... .-+.++..+.++|++|
T Consensus 90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 888875 4443222 3578999999999998
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.7e-05 Score=62.84 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=66.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhcccccc----cCCCcEEEEEEEeCCCCccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAGLIS----LRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~~~~----~~~~~v~~~~ld~~~~~~~~ 175 (282)
.+|.+.||+|+|+|.++-.++...+ ..++++|. +++++..++|+...-...+ ...+++.+...|-...
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g---- 156 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG---- 156 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc----
Confidence 4699999999999999988875554 34589999 9999999999986432110 0123444443332221
Q ss_pred hhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 176 VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 176 ~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
.....+||.|.+. .....+.+.+...|+++ |++++-
T Consensus 157 -~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~g------Grllip 192 (237)
T KOG1661|consen 157 -YAEQAPYDAIHVG------AAASELPQELLDQLKPG------GRLLIP 192 (237)
T ss_pred -CCccCCcceEEEc------cCccccHHHHHHhhccC------CeEEEe
Confidence 1224689999985 22334445555677787 565553
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=60.73 Aligned_cols=89 Identities=29% Similarity=0.340 Sum_probs=63.4
Q ss_pred cEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 108 NILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
+++|||+|.|.+|+.+|...+ .+|+.+|. ..=+..++.-+..-++ .++.+......+ ......||+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~------~~~~~~fd~ 118 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE------PEYRESFDV 118 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH------TTTTT-EEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc------cccCCCccE
Confidence 799999999999999997776 58999999 7656666655554443 245665533322 223578999
Q ss_pred EEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 186 ILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 186 Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|++--+ ..+..++..+..+++++
T Consensus 119 v~aRAv----~~l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 119 VTARAV----APLDKLLELARPLLKPG 141 (184)
T ss_dssp EEEESS----SSHHHHHHHHGGGEEEE
T ss_pred EEeehh----cCHHHHHHHHHHhcCCC
Confidence 998543 46888999999999987
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.9e-05 Score=69.65 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=83.6
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLI 154 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~ 154 (282)
.++.+|-.++..+... ..++.++|+-||||..|+.+| +...+|+++++ +++++.|+.|+..|+..
T Consensus 366 ~~aevLys~i~e~~~l------------~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngis- 431 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGL------------PADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGIS- 431 (534)
T ss_pred HHHHHHHHHHHHHhCC------------CCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCcc-
Confidence 3667888899887744 346899999999999999998 56689999999 99999999999999853
Q ss_pred ccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 155 SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 155 ~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
++.+....-.+.-...+...-..-++|...|.-. ......+++.++..-++. +++++++.
T Consensus 432 -----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~-------rlvyvSCn 491 (534)
T KOG2187|consen 432 -----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPR-------RLVYVSCN 491 (534)
T ss_pred -----ceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCcc-------ceEEEEcC
Confidence 3444432111100111111112345555555543 345667777777776665 66777654
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00081 Score=57.86 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=87.3
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHH
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
+..+++.++.=+.|+.++. +..|++||=||= -=+.|+++|.. .+++|+.+|+ +.+++.+++...
T Consensus 23 ~~~T~eT~~~Ra~~~~~~g-------------dL~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~ 88 (243)
T PF01861_consen 23 GYATPETTLRRAALMAERG-------------DLEGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAE 88 (243)
T ss_dssp --B-HHHHHHHHHHHHHTT--------------STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhcC-------------cccCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHH
Confidence 4468888888888887754 346999999994 35667777643 3589999999 999999999998
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
..+. .+.+...|..+.-+..+ .++||+++. |+.|-.+-+..++..-...|+.. |+..++....
T Consensus 89 ~~gl-------~i~~~~~DlR~~LP~~~---~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~------g~~gy~~~~~ 151 (243)
T PF01861_consen 89 EEGL-------PIEAVHYDLRDPLPEEL---RGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGE------GCAGYFGFTH 151 (243)
T ss_dssp HHT---------EEEE---TTS---TTT---SS-BSEEEE----SSHHHHHHHHHHHHHTB-ST------T-EEEEEE-T
T ss_pred HcCC-------ceEEEEecccccCCHHH---hcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCC------CceEEEEEec
Confidence 8774 37777777777433332 579998887 88888888888888888888754 4455555443
Q ss_pred cCcc--cHHHHHHHH-hhcCceEEEc
Q 023457 229 RRWK--KDSVFFKKA-KKLFDVETIH 251 (282)
Q Consensus 229 ~~~~--~~~~f~~~~-~~~f~ve~v~ 251 (282)
+... ....+.+.+ +.||.++.+-
T Consensus 152 ~~~s~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 152 KEASPDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp TT--HHHHHHHHHHHHTS--EEEEEE
T ss_pred CcCcHHHHHHHHHHHHHCCcCHHHHH
Confidence 3321 112222322 3578777654
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.6e-05 Score=62.67 Aligned_cols=105 Identities=22% Similarity=0.225 Sum_probs=53.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccc---cCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLIS---LRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~---~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
++...+|||||.|-+-+.+|...+ .+.+++++ +...+.++........... .....+.+...|+.+ .......
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~--~~~~~~~ 119 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD--PDFVKDI 119 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT--HHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc--cHhHhhh
Confidence 477999999999999988886666 46999999 7765555443332111100 012344444444433 1111111
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
-...|+|+++...|..+....+. .+..-+++|
T Consensus 120 ~s~AdvVf~Nn~~F~~~l~~~L~-~~~~~lk~G 151 (205)
T PF08123_consen 120 WSDADVVFVNNTCFDPDLNLALA-ELLLELKPG 151 (205)
T ss_dssp GHC-SEEEE--TTT-HHHHHHHH-HHHTTS-TT
T ss_pred hcCCCEEEEeccccCHHHHHHHH-HHHhcCCCC
Confidence 24579999999988766555553 333345555
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=57.09 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred cEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 108 NILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
+|||+|||+|..++.++...+ .+|+++|. +.+.+.+++|+..|+. .++.+.+..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence 589999999999999986654 38999999 9999999999998874 236666655554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.004 Score=57.31 Aligned_cols=141 Identities=20% Similarity=0.188 Sum_probs=88.6
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHH
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..-.+|++.+..| ...+|.+|||+-++.|.=+..+|.... ..|++.|. +.-+..++.|+.
T Consensus 140 vQd~sS~l~a~~L----------------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~ 203 (355)
T COG0144 140 VQDEASQLPALVL----------------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK 203 (355)
T ss_pred EcCHHHHHHHHHc----------------CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH
Confidence 3445666666555 345688999999999988888876553 46799999 889999999999
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEE------cCccCCCC----------------CHHHHHHHHH
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILA------SDVVYHDH----------------LFDPLLVTLR 206 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~------sd~ly~~~----------------~~~~ll~~l~ 206 (282)
+-+.. ++.+...|-.. .........+||.|+. ..++...+ ....++....
T Consensus 204 RlG~~------nv~~~~~d~~~--~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~ 275 (355)
T COG0144 204 RLGVR------NVIVVNKDARR--LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAAL 275 (355)
T ss_pred HcCCC------ceEEEeccccc--ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 87742 23444433221 1111111235999995 12232111 2457888888
Q ss_pred HHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh
Q 023457 207 LFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK 243 (282)
Q Consensus 207 ~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~ 243 (282)
++++|| |.+++..+.....+.+......+++
T Consensus 276 ~~lk~G------G~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 276 KLLKPG------GVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred HhcCCC------CEEEEEccCCchhcCHHHHHHHHHh
Confidence 999998 7777766654444444333333433
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00048 Score=62.07 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=88.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH--------hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI--------LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~--------~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~ 174 (282)
..+.+|+|-.||+|..-+.+... ...++++.|+ +.++..++.|+..++.. .....+...|.-. .
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~---~ 117 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLE---N 117 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTT---S
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----ccccccccccccc---c
Confidence 35778999999999998887653 2468999999 88999998888776542 1122233222211 1
Q ss_pred chhhcCCCccEEEEcCccCCC--C-------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec--Cc
Q 023457 175 DVAVVGREFDVILASDVVYHD--H-------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR--RW 231 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~~--~-------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~--~~ 231 (282)
........||+|+++.++-.. . ..-.++..+.+.|+++ |+++++++... +.
T Consensus 118 ~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~------G~~~~Ilp~~~L~~~ 191 (311)
T PF02384_consen 118 DKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG------GRAAIILPNGFLFSS 191 (311)
T ss_dssp HSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE------EEEEEEEEHHHHHGS
T ss_pred cccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc------cceeEEecchhhhcc
Confidence 111113689999998765432 0 0124677777888888 78888876432 11
Q ss_pred ccHHHHHHHHhhcCceEEEcccC--CCCCcccceEEEEEeeecC
Q 023457 232 KKDSVFFKKAKKLFDVETIHADL--PCNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 232 ~~~~~f~~~~~~~f~ve~v~~~~--~~~~~~~~~~v~~~~~~~~ 273 (282)
.....+.+.+.+.+.++.|-.-+ .+........++.+.+++.
T Consensus 192 ~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 192 SSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp THHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred chHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 12344444444445555433222 2233455567777777653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.005 Score=51.93 Aligned_cols=155 Identities=20% Similarity=0.202 Sum_probs=92.7
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCC--EEEEEeh-HhHHHHHHHHHHhccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGA--KVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~--~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
+++.-|.+..+++. ...++.+|+||||-.|..+..+++..+. .|+++|+ |--
T Consensus 28 RAa~KL~el~~k~~------------i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------- 82 (205)
T COG0293 28 RAAYKLLELNEKFK------------LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------- 82 (205)
T ss_pred hHHHHHHHHHHhcC------------eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-------------
Confidence 56777777777763 2346899999999999999999977764 4999999 420
Q ss_pred ccccCCCcEEEEEEEeCCCCcc-chh-hc-CCCccEEEEcCccCCC------------CCHHHHHHHHHHHHhcCCCCCC
Q 023457 153 LISLRGGSVHVAPLRWGEAEAN-DVA-VV-GREFDVILASDVVYHD------------HLFDPLLVTLRLFLNSGEPEPK 217 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~-~~~-~~-~~~fD~Ii~sd~ly~~------------~~~~~ll~~l~~ll~~g~~~~~ 217 (282)
....+...+.|+...... .+. .. ..++|+|++ |+--.. .....++......|+++
T Consensus 83 ----~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~----- 152 (205)
T COG0293 83 ----PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG----- 152 (205)
T ss_pred ----cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC-----
Confidence 122366777777763221 111 11 334698885 332211 12344555556678887
Q ss_pred CceEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeee
Q 023457 218 KKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 218 ~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~ 271 (282)
|.+++-..+ -+....++..+++.|+.-.+... .........+|.+-+.
T Consensus 153 -G~fv~K~fq---g~~~~~~l~~~~~~F~~v~~~KP--~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 153 -GSFVAKVFQ---GEDFEDLLKALRRLFRKVKIFKP--KASRKRSREIYLVAKG 200 (205)
T ss_pred -CeEEEEEEe---CCCHHHHHHHHHHhhceeEEecC--ccccCCCceEEEEEec
Confidence 554443322 22467888888888866554433 2222223356666554
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00036 Score=60.74 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=68.3
Q ss_pred CccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHH
Q 023457 69 GLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 69 g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~ 147 (282)
++|..+-.-..++...++..... ++..|||+|.|||.++..+. ..+++|+|++. +.|+..+++.+
T Consensus 35 d~GQHilkNp~v~~~I~~ka~~k-------------~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv 100 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKADLK-------------PTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRV 100 (315)
T ss_pred ccchhhhcCHHHHHHHHhccCCC-------------CCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHh
Confidence 44545555566777766654433 47799999999999999997 56799999999 99999999877
Q ss_pred HhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEc
Q 023457 148 DANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILAS 189 (282)
Q Consensus 148 ~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~s 189 (282)
..-. .....++...|+-.. + ...||++|++
T Consensus 101 ~gtp-----~~~kLqV~~gD~lK~---d----~P~fd~cVsN 130 (315)
T KOG0820|consen 101 QGTP-----KSGKLQVLHGDFLKT---D----LPRFDGCVSN 130 (315)
T ss_pred cCCC-----ccceeeEEecccccC---C----Ccccceeecc
Confidence 6432 235666766555441 1 3568988875
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00024 Score=63.24 Aligned_cols=108 Identities=10% Similarity=-0.036 Sum_probs=66.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~~~~~~ 182 (282)
++..+++||||-|--.+-.-+++...++++|+ ...++.+++....-........-.+.+...|-...... .++..+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 47789999999887666665555689999999 77898888766532211000000122222221110011 11112345
Q ss_pred ccEEEEcCccCC----CCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYH----DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~~g 212 (282)
||+|-+--++|+ .+....+++++.+.|+||
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 999988877764 345778899999999998
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=63.87 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=79.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc-ccc----------c-----------CCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG-LIS----------L-----------RGG 159 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~-~~~----------~-----------~~~ 159 (282)
..+|.++||||||+-+.-+..|......|+++|+ +...+.+++=+..-+. ... . ...
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3568899999999976655444344578999999 8777766665433211 000 0 001
Q ss_pred cE-EEEEEEeCCCCccchhh---cCCCccEEEEcCccC----CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc
Q 023457 160 SV-HVAPLRWGEAEANDVAV---VGREFDVILASDVVY----HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 160 ~v-~~~~ld~~~~~~~~~~~---~~~~fD~Ii~sd~ly----~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~ 231 (282)
.+ .+...|..+ ...+.. ..++||+|+++-|+. ..+.+...++.+.++|+|| |.+++.......+
T Consensus 134 ~Vk~Vv~cDV~~--~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG------G~Lil~~~l~~t~ 205 (256)
T PF01234_consen 134 AVKQVVPCDVTQ--PNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG------GHLILAGVLGSTY 205 (256)
T ss_dssp HEEEEEE--TTS--SSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE------EEEEEEEESS-SE
T ss_pred hhceEEEeeccC--CCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC------cEEEEEEEcCcee
Confidence 12 233344444 222222 133599999988875 3446788899999999998 6666554321111
Q ss_pred -----------ccHHHHHH-HHh-hcCceEEEcc
Q 023457 232 -----------KKDSVFFK-KAK-KLFDVETIHA 252 (282)
Q Consensus 232 -----------~~~~~f~~-~~~-~~f~ve~v~~ 252 (282)
...+.+.. .++ .||.++....
T Consensus 206 Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 206 YMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 12455544 333 4888887773
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00092 Score=57.86 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
....|-|+|||-+-++. .....|...|+ +. ..+ +...|..+ .+..+.+.
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~-------------------~~~--V~~cDm~~-----vPl~d~sv 229 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVAV-------------------NER--VIACDMRN-----VPLEDESV 229 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeecC-------------------CCc--eeeccccC-----CcCccCcc
Confidence 35689999999877543 33467888887 31 122 23333333 34446889
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh-cCceEEEcccCCCCCcccc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK-LFDVETIHADLPCNGARVG 262 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f~ve~v~~~~~~~~~~~~ 262 (282)
|+++.+-.+. -.++..++..+.++|++| +.++++--..|+.....|.+.+.. ||.+..... ...-
T Consensus 230 DvaV~CLSLM-gtn~~df~kEa~RiLk~g-------G~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~------~n~~ 295 (325)
T KOG3045|consen 230 DVAVFCLSLM-GTNLADFIKEANRILKPG-------GLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV------SNKY 295 (325)
T ss_pred cEEEeeHhhh-cccHHHHHHHHHHHhccC-------ceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh------hcce
Confidence 9999865553 347889999999999998 667777666777777889888864 998876542 2334
Q ss_pred eEEEEEeeec
Q 023457 263 VVVYRMTGKA 272 (282)
Q Consensus 263 ~~v~~~~~~~ 272 (282)
+.+|.|.+-.
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 5666666543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00085 Score=57.48 Aligned_cols=110 Identities=19% Similarity=0.128 Sum_probs=74.4
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H-hHHHHHHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-P-HVLTNLQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~-~~l~~~~~n~~~n 150 (282)
.+=++++-|...|.... ...+|+++||||+.||-.+..+.+.++++|+++|. - .+-..++.
T Consensus 59 yVSRG~~KL~~ale~F~------------l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----- 121 (245)
T COG1189 59 YVSRGGLKLEKALEEFE------------LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----- 121 (245)
T ss_pred ccccHHHHHHHHHHhcC------------cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----
Confidence 35578889999997765 34679999999999999999998777899999998 3 33333432
Q ss_pred ccccccCCCcEEEE-EEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 151 AGLISLRGGSVHVA-PLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 151 ~~~~~~~~~~v~~~-~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++.+. ..+.....+.+ ..+..|+|++--.+ -....++..+..+++++
T Consensus 122 -------d~rV~~~E~tN~r~l~~~~---~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~ 171 (245)
T COG1189 122 -------DPRVIVLERTNVRYLTPED---FTEKPDLIVIDVSF---ISLKLILPALLLLLKDG 171 (245)
T ss_pred -------CCcEEEEecCChhhCCHHH---cccCCCeEEEEeeh---hhHHHHHHHHHHhcCCC
Confidence 2233222 22222211112 23467888884333 35677888888999887
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00061 Score=58.65 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=67.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
..+||||||.|-.-+.+|+..+ ..++++++ ...+..+.+.+...++ .++.+...|-.. ..+....+++.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~--~l~~~~~~~sl~ 121 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVE--VLDYLIPDGSLD 121 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHH--HHHhcCCCCCee
Confidence 5899999999999999997776 58999999 7777777666666543 145555433222 001111234788
Q ss_pred EEEEc--CccCCCC------CHHHHHHHHHHHHhcC
Q 023457 185 VILAS--DVVYHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~s--d~ly~~~------~~~~ll~~l~~ll~~g 212 (282)
-|..+ |+..... ..+.+++.+.+.|++|
T Consensus 122 ~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g 157 (227)
T COG0220 122 KIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPG 157 (227)
T ss_pred EEEEECCCCCCCccccccccCCHHHHHHHHHHccCC
Confidence 88875 5555332 3678999999999998
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0002 Score=58.29 Aligned_cols=80 Identities=11% Similarity=-0.032 Sum_probs=57.0
Q ss_pred EEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHh
Q 023457 132 TVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLN 210 (282)
Q Consensus 132 ~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~ 210 (282)
+++|+ ++|++.++++....... ...++.+...|. .+++...+.||+|+++.++++..+...+++.+.++|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~-----~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDA-----IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEech-----hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC
Confidence 47899 99999998765432110 012455554433 3344446689999999999998999999999999999
Q ss_pred cCCCCCCCceEEEEE
Q 023457 211 SGEPEPKKKKMNFVM 225 (282)
Q Consensus 211 ~g~~~~~~g~~~il~ 225 (282)
|| |.++++-
T Consensus 73 pG------G~l~i~d 81 (160)
T PLN02232 73 PG------SRVSILD 81 (160)
T ss_pred cC------eEEEEEE
Confidence 98 5655543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=65.44 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-------------------------------------------CCEEEEEeh-HhHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-------------------------------------------GAKVTVTDL-PHVL 140 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-------------------------------------------~~~V~~tD~-~~~l 140 (282)
.+..++|-+||+|.+.|.+|... ..+++++|+ +.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46799999999999999987531 126999999 9999
Q ss_pred HHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC----CCHHHHHHHHHHHHh
Q 023457 141 TNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD----HLFDPLLVTLRLFLN 210 (282)
Q Consensus 141 ~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~----~~~~~ll~~l~~ll~ 210 (282)
+.++.|+..++. .+.+.+...|+.+... ......||+|+++.+.... .....+...+...++
T Consensus 270 ~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~---~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 270 QAARKNARRAGV-----AELITFEVKDVADLKN---PLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHcCC-----CcceEEEeCChhhccc---ccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 999999999885 4456666666654211 1112469999998775432 234445555555554
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00041 Score=60.62 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=54.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||+|.|.++..++ ..+++|+++++ +.+++.+++.... ..++.+..-|.-.. +++... .+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~---d~~~l~-~~ 96 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLL-ERAARVTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKF---DFPSLA-QP 96 (259)
T ss_pred CCCeEEEECCCCCHHHHHHH-hhcCeEEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcC---cchhhc-CC
Confidence 37799999999999999998 45688999999 8899998876542 34566665444432 221111 67
Q ss_pred cEEEEcCccC
Q 023457 184 DVILASDVVY 193 (282)
Q Consensus 184 D~Ii~sd~ly 193 (282)
+.|+++-+.|
T Consensus 97 ~~vVaNlPY~ 106 (259)
T COG0030 97 YKVVANLPYN 106 (259)
T ss_pred CEEEEcCCCc
Confidence 8888865543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=59.43 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
...+-|||+|+|.++..+|.. +.+|++++. |.....+.+|+..++ ..++.+.+-|-.+ ... ...|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~-----y~f--e~AD 98 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARD-----YDF--ENAD 98 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCC------CcceEEEeccccc-----ccc--cccc
Confidence 458999999999999999854 789999999 999999999987666 3456666533222 211 3568
Q ss_pred EEEEc--CccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILAS--DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~s--d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+|+|- |..--.+...+++..+..+|+..
T Consensus 99 vvicEmlDTaLi~E~qVpV~n~vleFLr~d 128 (252)
T COG4076 99 VVICEMLDTALIEEKQVPVINAVLEFLRYD 128 (252)
T ss_pred eeHHHHhhHHhhcccccHHHHHHHHHhhcC
Confidence 88873 33333344556666666777766
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0026 Score=53.88 Aligned_cols=138 Identities=18% Similarity=0.125 Sum_probs=85.7
Q ss_pred ehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccc
Q 023457 75 WPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL 153 (282)
Q Consensus 75 W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~ 153 (282)
=+++.+|.+||........ ......++|||||=+....+.. ..--.|+.+|+ +.
T Consensus 29 GdSSK~lv~wL~~~~~~~~--------~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~--------------- 83 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPK--------NGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ--------------- 83 (219)
T ss_pred CchhHHHHHHhhhhccccc--------cccccceEEeecccCCCCcccc--cCceeeEEeecCCC---------------
Confidence 3588899999976653320 0112369999999754433322 12246999998 42
Q ss_pred cccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCC---HHHHHHHHHHHHhcCCCCCCCce-----EEEEE
Q 023457 154 ISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHL---FDPLLVTLRLFLNSGEPEPKKKK-----MNFVM 225 (282)
Q Consensus 154 ~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g~~~~~~g~-----~~il~ 225 (282)
...+.+-||.+-.... ...+.||+|.+|-|+...+. ...++..+.++|+++ |. ++++.
T Consensus 84 ------~~~I~qqDFm~rplp~--~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~------g~~~~~~LFlVl 149 (219)
T PF11968_consen 84 ------HPGILQQDFMERPLPK--NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPP------GLSLFPSLFLVL 149 (219)
T ss_pred ------CCCceeeccccCCCCC--CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCC------CccCcceEEEEe
Confidence 2334555665521111 12568999999999977654 457888888999998 44 44444
Q ss_pred E----eecCcccHHHHHHHHhh-cCceEEEc
Q 023457 226 A----HLRRWKKDSVFFKKAKK-LFDVETIH 251 (282)
Q Consensus 226 ~----~~~~~~~~~~f~~~~~~-~f~ve~v~ 251 (282)
+ ...+|-....|...+.. ||..-+-.
T Consensus 150 P~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 150 PLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 3 23455556777776664 78665543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0023 Score=56.26 Aligned_cols=92 Identities=9% Similarity=-0.051 Sum_probs=65.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..++||=||.|-|.....+++. ..+|+.+|+ +.+++.+++-+....... ...++.+.. |-. ....++|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~--~DpRv~l~~--~~~------~~~~~~f 140 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVK--NNKNFTHAK--QLL------DLDIKKY 140 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhh--cCCCEEEee--hhh------hccCCcC
Confidence 4689999999999999999754 469999999 999999988554322111 245565553 221 1113689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+||. |..+. +.+.+.+++.|+++
T Consensus 141 DVIIv-Ds~~~----~~fy~~~~~~L~~~ 164 (262)
T PRK00536 141 DLIIC-LQEPD----IHKIDGLKRMLKED 164 (262)
T ss_pred CEEEE-cCCCC----hHHHHHHHHhcCCC
Confidence 99996 65543 56778899999998
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00077 Score=55.79 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-Hh
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PH 138 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~ 138 (282)
+++.-|.+.+..+..- ....+.+||||||++|-.+..++... ..+|+++|+ +.
T Consensus 4 Ra~~KL~ei~~~~~~~----------~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIF----------KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTTSSS-----------TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHCCCC----------CcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4677788887765511 12246899999999999999998665 479999999 54
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00096 Score=59.21 Aligned_cols=96 Identities=21% Similarity=0.149 Sum_probs=56.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.+...+|||+|||+|....++....+ .+++++|. +.|++..+.-+..... . ....|......+.. .
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--------~--~~~~~~~~~~~~~~-~ 99 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--------N--RNAEWRRVLYRDFL-P 99 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--------c--ccchhhhhhhcccc-c
Confidence 46778999999999987666554433 58999999 8888877764443211 0 00111110000011 1
Q ss_pred CCCccEEEEcCccCCCCC--HHHHHHHHHHHH
Q 023457 180 GREFDVILASDVVYHDHL--FDPLLVTLRLFL 209 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll 209 (282)
....|+|+++.++..... ...+++.+...+
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~ 131 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKT 131 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhc
Confidence 224499999999876554 334444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=8.6e-05 Score=64.99 Aligned_cols=125 Identities=20% Similarity=0.114 Sum_probs=76.3
Q ss_pred ccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 70 LSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 70 ~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
+|..+|++++.|..++.+.... ..++++.++|||.+.....++ +.+..|...+. ..+.-++..+..
T Consensus 67 tg~~~w~~al~L~~~l~~~~d~------------~~~~~v~~l~~gi~~~~~~~a-~~~~~v~~~~~~~~~~~~l~~~~~ 133 (262)
T KOG2497|consen 67 TGLSVWESALSLEADLRDKPDL------------SSELTVEELGCDIALKHVLAA-RVPDCVVTLDSLRCAGLLLEEIIL 133 (262)
T ss_pred hccccchHHHHHHHHHhhCccc------------ccccchHhhccCHHHHHHHHH-hcccceecCCccCcHHHHHHHHHh
Confidence 4779999999999999876632 458899999999999985554 44445555444 444334433333
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhc-CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+..... ..+-..-++.|.. ....+.. ...+|+|+++|++|. .....++..+..+|..+
T Consensus 134 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~ 193 (262)
T KOG2497|consen 134 LSRDLSL--EVRDSAPELNQAF--LESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRW 193 (262)
T ss_pred ccccccc--cccccchhHHHHH--HhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhc
Confidence 3221110 1111112222221 0000000 224899999999999 78888888888877654
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00026 Score=60.18 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=70.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
-..++|||||.|.+.-.+....-.+++.+|. -.|++.++..- ...+....+. ++ .+.++...+++|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q----------dp~i~~~~~v-~D--EE~Ldf~ens~D 139 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ----------DPSIETSYFV-GD--EEFLDFKENSVD 139 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC----------CCceEEEEEe-cc--hhcccccccchh
Confidence 3489999999999998886554578999999 78888876521 1122222211 22 334444568999
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||++-.+|+..+++.-+..++..++|.
T Consensus 140 LiisSlslHW~NdLPg~m~~ck~~lKPD 167 (325)
T KOG2940|consen 140 LIISSLSLHWTNDLPGSMIQCKLALKPD 167 (325)
T ss_pred hhhhhhhhhhhccCchHHHHHHHhcCCC
Confidence 9999999999999999999999999998
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=57.86 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=66.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
++||-||-|.|...-.+++... .+++++|+ +.+++.+++-+..-.... ...++.+..-|-.+ -+.....+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~--~dpRv~i~i~Dg~~----~v~~~~~~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGA--DDPRVEIIIDDGVE----FLRDCEEKFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccccc--CCCceEEEeccHHH----HHHhCCCcCC
Confidence 6999999999999999986553 79999999 999999998765432111 12455544322111 1222234899
Q ss_pred EEEEcCccCCCC-----CHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDH-----LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g 212 (282)
+||. |+.-... .-..+.+.+++.|+++
T Consensus 152 vIi~-D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 152 VIIV-DSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred EEEE-cCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 9997 2221111 1378999999999998
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0048 Score=54.50 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=77.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
....+||||.||.|.--+-+....+ .+|...|+ +..++..++-++.+++ .+.+++.+.|-.+ ...+...
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd--~~~l~~l 206 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFD--RDSLAAL 206 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCC--HhHhhcc
Confidence 3466999999999998777765554 58999999 9999999999999885 4445777765444 3345555
Q ss_pred CCCccEEEEcCccCCCCC---HHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHL---FDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g 212 (282)
...++++|.+.++...++ +...++-+..++.||
T Consensus 207 ~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 207 DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 677899999987765444 556777888889898
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=61.32 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=65.2
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~fD 184 (282)
..|||||+|||++++++++.++-.|++.+. ..|.+.+++-...|+. .+++.+.+-.=. ++... ....|
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrSt-----ev~vg~~~Rad 137 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRST-----EVKVGGSSRAD 137 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccc-----eeeecCcchhh
Confidence 369999999999999999888789999999 9999999999999885 566666542111 11110 12356
Q ss_pred EEEEcCccC---CCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVY---HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly---~~~~~~~ll~~l~~ll~~g 212 (282)
+++..+..- ....++.+-....+|+.++
T Consensus 138 I~v~e~fdtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 138 IAVREDFDTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhHhhhhhhhhccccchhHHHHHHHhcccC
Confidence 555543221 1234556666666777777
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.029 Score=47.86 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=83.6
Q ss_pred ccceeehh-HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHH
Q 023457 70 LSFKLWPA-ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 70 ~g~~~W~~-a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~ 145 (282)
...++|+- ---|+..|..-.... +..+|.+||=||+.+|..--.++--.+ +.|++++. +.....+-.
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~~---------~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~ 116 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLENI---------PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN 116 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S-----------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred cceeecCchhhHHHHHHHcCcccc---------CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH
Confidence 36689983 344555553332222 446788999999999997766663333 69999999 765544433
Q ss_pred HHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 146 NVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 146 n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
-++. ..++-..--|-.. +......-+..|+|++ |+- .+.+.+.++.+...+|++| |. ++++
T Consensus 117 la~~--------R~NIiPIl~DAr~--P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~g------G~-~~i~ 177 (229)
T PF01269_consen 117 LAKK--------RPNIIPILEDARH--PEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPG------GH-LIIS 177 (229)
T ss_dssp HHHH--------STTEEEEES-TTS--GGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEE------EE-EEEE
T ss_pred Hhcc--------CCceeeeeccCCC--hHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCC------cE-EEEE
Confidence 2222 1222222112222 3333333557898887 554 4567888999999999998 44 4555
Q ss_pred EeecCcc----cHHHHHH---HHhh-cCce-EEEcc
Q 023457 226 AHLRRWK----KDSVFFK---KAKK-LFDV-ETIHA 252 (282)
Q Consensus 226 ~~~~~~~----~~~~f~~---~~~~-~f~v-e~v~~ 252 (282)
...+... +...|-+ .+++ +|++ +.+..
T Consensus 178 iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 178 IKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp EEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred EecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 4444332 2344433 3333 7887 44443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=56.33 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++..|||||+|+|.++..++..+ .+|+++|. +.+.+.++..... ..++.+..-|+...+.... .....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~--~~~~~ 98 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDL--LKNQP 98 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGH--CSSSE
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHh--hcCCc
Confidence 58899999999999999998554 99999999 9999999876552 3477777766665322211 12345
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..|+++-+ |+ .-..++..+..+.+.|
T Consensus 99 ~~vv~NlP-y~--is~~il~~ll~~~~~g 124 (262)
T PF00398_consen 99 LLVVGNLP-YN--ISSPILRKLLELYRFG 124 (262)
T ss_dssp EEEEEEET-GT--GHHHHHHHHHHHGGGC
T ss_pred eEEEEEec-cc--chHHHHHHHhhccccc
Confidence 67777644 42 3345666665555554
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.005 Score=53.79 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=77.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC-
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR- 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~- 181 (282)
+.++||=||.|.|.....+.+.. ..+|+++|+ +.+++.+++-....... ....++++.. +++ ..-+.....
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~---~Dg-~~~l~~~~~~ 149 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIII---GDG-RKFLKETQEE 149 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEE---STH-HHHHHTSSST
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEE---hhh-HHHHHhccCC
Confidence 47799999999999988886433 279999999 99999998876653321 1245666654 221 011222234
Q ss_pred CccEEEE--cCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc--cHHHHHHHHhhcCc
Q 023457 182 EFDVILA--SDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK--KDSVFFKKAKKLFD 246 (282)
Q Consensus 182 ~fD~Ii~--sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~--~~~~f~~~~~~~f~ 246 (282)
+||+|+. .+...... .-..+++.+++.|+++ |.+++-+ ...... ........++..|.
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~------Gv~v~~~-~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD------GVLVLQA-GSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE------EEEEEEE-EETTTTHHHHHHHHHHHHTTSS
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC------cEEEEEc-cCcccchHHHHHHHHHHHHhCC
Confidence 8999997 23221111 2468899999999998 4443333 222221 23444555666665
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=55.95 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=81.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch-h-hcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-A-VVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-~-~~~ 180 (282)
.+|.+|||-..|-|..++.++++++.+|+-++. +.+|+++.-|-=..++ +...+.+.. ++ ..++ . ..+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iil---GD--~~e~V~~~~D 203 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FEIAIKIIL---GD--AYEVVKDFDD 203 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cccccEEec---cc--HHHHHhcCCc
Confidence 468999999999999999998766569999999 9999888654321111 122222222 22 2211 1 125
Q ss_pred CCccEEEEcCccCCCC---CHHHHHHHHHHHHhcCCCCCCCceEEEEEE-eecCc---ccHHHHHHHHh-hcCc-eEEEc
Q 023457 181 REFDVILASDVVYHDH---LFDPLLVTLRLFLNSGEPEPKKKKMNFVMA-HLRRW---KKDSVFFKKAK-KLFD-VETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~---~~~~ll~~l~~ll~~g~~~~~~g~~~il~~-~~~~~---~~~~~f~~~~~-~~f~-ve~v~ 251 (282)
.+||+||--.+=+... --+.+.+.+.++|++| |+++-... ...++ .......+.++ .||. |+.+.
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrg------GrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRG------GRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcC------CcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 6899999744433211 2467888999999999 55444332 22222 22445555554 4887 55554
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=50.79 Aligned_cols=51 Identities=12% Similarity=-0.096 Sum_probs=46.1
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
.+.++++|+|||++.|..++..+.+++..|++.+. +...+..+.|+..|..
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 46789999999999999999999888889999999 8999999999998864
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00021 Score=59.76 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=66.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.....++||||+|-|-++..++.. -.+|++|+. ..|...+++. ..-....++|.+ .+-
T Consensus 110 ~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk------------~ynVl~~~ew~~--------t~~ 168 (288)
T KOG3987|consen 110 GQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK------------NYNVLTEIEWLQ--------TDV 168 (288)
T ss_pred CCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc------------CCceeeehhhhh--------cCc
Confidence 345689999999999999888633 267999999 7787777651 111234456665 135
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|.|-.++-.-.+.-.+++-|...++|.
T Consensus 169 k~dli~clNlLDRc~~p~kLL~Di~~vl~ps 199 (288)
T KOG3987|consen 169 KLDLILCLNLLDRCFDPFKLLEDIHLVLAPS 199 (288)
T ss_pred eeehHHHHHHHHhhcChHHHHHHHHHHhccC
Confidence 7999999888766667889999999999996
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0053 Score=52.36 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=67.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--c
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--V 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--~ 179 (282)
..+++||||.=||.-++..|..++ ++|++.|+ ++..+....-++..+. ...+.+.+..-.+. ...+-. .
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i~g~a~es-Ld~l~~~~~ 146 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFIEGPALES-LDELLADGE 146 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeeeecchhhh-HHHHHhcCC
Confidence 478999999999998888887765 79999999 8888888777776664 34555554322110 001111 2
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++||++|.- .+...+......+-+|+++|
T Consensus 147 ~~tfDfaFvD---adK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 147 SGTFDFAFVD---ADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred CCceeEEEEc---cchHHHHHHHHHHHhhcccc
Confidence 5689999972 12334557778888899998
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=58.34 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=39.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~ 148 (282)
.++..+||.+||.|..+..++...+ .+|+++|. +.+++.+++++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 3477999999999999999997764 79999999 999999988764
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0029 Score=54.95 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=56.0
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc--c-CCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS--L-RGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~--~-~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|||+-+|+|..++.++. .|++|+++|. +.+...++.|+..-..... . ...++.+..-+-.. .+......|
T Consensus 91 ~VLD~TAGlG~Da~~las-~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~----~L~~~~~~f 165 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS-VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT----ALTDITPRP 165 (250)
T ss_pred EEEECCCCccHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH----HHhhCCCCC
Confidence 899999999999999985 4677999999 8899999999886311000 0 01234444322111 122223479
Q ss_pred cEEEEcCccCCCCCHH
Q 023457 184 DVILASDVVYHDHLFD 199 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~ 199 (282)
|+|+. |+.|-...-.
T Consensus 166 DVVYl-DPMfp~~~ks 180 (250)
T PRK10742 166 QVVYL-DPMFPHKQKS 180 (250)
T ss_pred cEEEE-CCCCCCCccc
Confidence 99997 7777544433
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=55.81 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCCcEEEeCCCCCHHH----HHHHHHh---C---CEEEEEeh-HhHHHHHHHHHH-hcccc-c----------c------
Q 023457 105 CQLNILELGSGTGLVG----MAAAAIL---G---AKVTVTDL-PHVLTNLQFNVD-ANAGL-I----------S------ 155 (282)
Q Consensus 105 ~g~~VLELGcGtG~~s----i~la~~~---~---~~V~~tD~-~~~l~~~~~n~~-~n~~~-~----------~------ 155 (282)
+..+|+-.||+||--. +.+.... . .+|+|||+ +.+++.+++-+= .+... . .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999743 3333211 1 38999999 889988865321 11100 0 0
Q ss_pred ----cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccC--CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 156 ----LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVY--HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 156 ----~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.....|.+..++..+ .......||+|+|-.|+- +.+....+++.+.+.|+|| +.+++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-----~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg-------G~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-----PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG-------GYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT------S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE-------EEEEE-
T ss_pred eEChHHcCceEEEecccCC-----CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC-------CEEEEe
Confidence 012456777666554 111246899999988764 3456788999999999997 655554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=51.80 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=39.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHH-----HhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 104 GCQLNILELGSGTGLVGMAAAA-----ILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~-----~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
.+..+|+|+|||-|.++..++. ..+.+|+++|. +..++.+++......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3567999999999999999986 44579999999 888888777666543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.018 Score=50.36 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=70.0
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..+|.+|||-|.|+|.++.++++..+ ++++-.|+ ..-.+.+.+-....+ +.+.+.+..-|.-... +...
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-----i~~~vt~~hrDVc~~G---F~~k 174 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-----IGDNVTVTHRDVCGSG---FLIK 174 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-----CCcceEEEEeecccCC---cccc
Confidence 45699999999999999999997775 69999999 766666777677666 3677888877665421 1111
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
...+|.|+. | .......+-.+...++.+
T Consensus 175 s~~aDaVFL-D----lPaPw~AiPha~~~lk~~ 202 (314)
T KOG2915|consen 175 SLKADAVFL-D----LPAPWEAIPHAAKILKDE 202 (314)
T ss_pred ccccceEEE-c----CCChhhhhhhhHHHhhhc
Confidence 356777776 3 345566667777788876
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0028 Score=55.90 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCCcEEEeCCCCCH----HHHHHHHHhC------CEEEEEeh-HhHHHHHHHHHHh--c---ccccc-------c-----
Q 023457 105 CQLNILELGSGTGL----VGMAAAAILG------AKVTVTDL-PHVLTNLQFNVDA--N---AGLIS-------L----- 156 (282)
Q Consensus 105 ~g~~VLELGcGtG~----~si~la~~~~------~~V~~tD~-~~~l~~~~~n~~~--n---~~~~~-------~----- 156 (282)
...+|+-.||+||- +++.+...++ -+|+|||+ ..+|+.++.-+=. + +.... .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36699999999995 3444444342 48999999 8899888653311 1 11000 0
Q ss_pred ------CCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCcc-C-CCCCHHHHHHHHHHHHhcC
Q 023457 157 ------RGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVV-Y-HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 157 ------~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~l-y-~~~~~~~ll~~l~~ll~~g 212 (282)
....|.+..++..... . ..+.||+|+|-+|+ | +.+....++..+...|++|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~----~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS----P-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc----c-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 0123444444443311 1 35679999997775 4 3556778999999999998
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0042 Score=55.40 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCcEEEeCCCCCHHH----HHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHh----cccc------------------
Q 023457 106 QLNILELGSGTGLVG----MAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDA----NAGL------------------ 153 (282)
Q Consensus 106 g~~VLELGcGtG~~s----i~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~----n~~~------------------ 153 (282)
..+|+-.||+||--. +.+.... ..+|+|||+ +.+++.+++-+-. .+..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999743 3332222 147999999 9999998775311 0000
Q ss_pred --c-ccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC--CCCHHHHHHHHHHHHhcC
Q 023457 154 --I-SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH--DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 154 --~-~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g 212 (282)
+ ......|.+..++..+. ..+ ....||+|+|-+++.+ .+....+++.+.+.|+||
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~---~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAK---QWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred EEEChHHHccCEEEcccCCCC---CCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 0 00113344444444331 111 1468999999877644 356889999999999998
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.017 Score=48.97 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=66.0
Q ss_pred EEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEE
Q 023457 109 ILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~I 186 (282)
|.|+||--|.+++.+.+... .+++++|+ +.-++.++.|+..+++ .+++.+..- ++ ...+. .....|+|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlg---dG-L~~l~-~~e~~d~i 70 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLG---DG-LEVLK-PGEDVDTI 70 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE----SG-GGG---GGG---EE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEEC---Cc-ccccC-CCCCCCEE
Confidence 68999999999999986554 47999999 9999999999999885 456666652 21 11111 12237888
Q ss_pred EEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceE
Q 023457 187 LASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVE 248 (282)
Q Consensus 187 i~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve 248 (282)
+.+.+=- ..+..+++.....++.. ..++ .++.......+.|+. +.+|.+.
T Consensus 71 vIAGMGG--~lI~~ILe~~~~~~~~~-------~~lI-LqP~~~~~~LR~~L~--~~gf~I~ 120 (205)
T PF04816_consen 71 VIAGMGG--ELIIEILEAGPEKLSSA-------KRLI-LQPNTHAYELRRWLY--ENGFEII 120 (205)
T ss_dssp EEEEE-H--HHHHHHHHHTGGGGTT---------EEE-EEESS-HHHHHHHHH--HTTEEEE
T ss_pred EEecCCH--HHHHHHHHhhHHHhccC-------CeEE-EeCCCChHHHHHHHH--HCCCEEE
Confidence 8875541 12233333332222221 3344 444454444555553 3677663
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.007 Score=58.39 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=66.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+..+||||||.|-..+.+|...+ ..++++|+ ...+..+.+.+...++ .++.+...++.. ... .....
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~--~~~-~~~~~ 416 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDL--ILN-DLPNN 416 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHH--HHH-hcCcc
Confidence 4567899999999999999987765 68999999 6666555555554432 244443322211 000 01246
Q ss_pred CccEEEEc--CccCCCC------CHHHHHHHHHHHHhcC
Q 023457 182 EFDVILAS--DVVYHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~s--d~ly~~~------~~~~ll~~l~~ll~~g 212 (282)
++|.|+.. |+..... ..+.+++.+.++|++|
T Consensus 417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 78888875 5554322 3578999999999998
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.027 Score=50.22 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+.||.|.=+..+|.... +.|++.|+ ..-+..++.|+...+. ..+.+...|... .......
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~---~~~~~~~ 154 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARK---LDPKKPE 154 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHH---HHHHHHT
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeecccc---ccccccc
Confidence 4578999999999999888886664 79999999 8999999999988663 244444322111 0001123
Q ss_pred CCccEEEEc------CccCCCC----------------CHHHHHHHHHHHH----hcCCCCCCCceEEEEEEeecCc
Q 023457 181 REFDVILAS------DVVYHDH----------------LFDPLLVTLRLFL----NSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 181 ~~fD~Ii~s------d~ly~~~----------------~~~~ll~~l~~ll----~~g~~~~~~g~~~il~~~~~~~ 231 (282)
..||.|+.- .++...+ ....+++...+++ ++| |.+++..+.....
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~g------G~lvYsTCS~~~e 225 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPG------GRLVYSTCSLSPE 225 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEE------EEEEEEESHHHGG
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCC------CeEEEEeccHHHH
Confidence 469999962 2222221 1456788888888 998 6777766654333
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.024 Score=52.22 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---------------------------------C-------EEEEEeh-HhHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---------------------------------A-------KVTVTDL-PHVLTNL 143 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---------------------------------~-------~V~~tD~-~~~l~~~ 143 (282)
.+..++|-=||+|.+.|.+|.... + .+++.|+ +.+++.+
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 356899999999999999985431 1 3789999 9999999
Q ss_pred HHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccC----CCC----CHHHHHHHHHHHHhcC
Q 023457 144 QFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVY----HDH----LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 144 ~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly----~~~----~~~~ll~~l~~ll~~g 212 (282)
+.|+...++ .+.+.+.+.|... +......+|+||++.+.- ... .+..+.+++++.++.-
T Consensus 271 k~NA~~AGv-----~d~I~f~~~d~~~-----l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 271 KANARAAGV-----GDLIEFKQADATD-----LKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred HHHHHhcCC-----CceEEEEEcchhh-----CCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 999999885 5567777766554 222225799999976632 122 2344555555666543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.026 Score=49.98 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=55.6
Q ss_pred CCcEEEeCCCC-CHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHH-hcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 106 QLNILELGSGT-GLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVD-ANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 106 g~~VLELGcGt-G~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~-~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++|+=||||. -+.++.+++.. +..|+++|+ +.+.+.+++-+. ..++ ..++.+...|-.. .....
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~-----~~~dl 190 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLD-----VTYDL 190 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGG-----G-GG-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhc-----ccccc
Confidence 45999999997 55677777554 367999999 999999988776 3332 4566666544322 22223
Q ss_pred CCccEEEEcCccC-CCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVY-HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly-~~~~~~~ll~~l~~ll~~g 212 (282)
..||+|+.+-.+. ..+.-..++..+.+.+++|
T Consensus 191 ~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 191 KEYDVVFLAALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp ---SEEEE-TT-S----SHHHHHHHHHHHS-TT
T ss_pred ccCCEEEEhhhcccccchHHHHHHHHHhhCCCC
Confidence 5899999887776 4557789999999999998
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0076 Score=50.97 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=71.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|.+||++|-|-|+..-.+-.+-+..-+.++. ++++..++.+.-. ...+|-+....|.+... .++ +..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~-------ek~nViil~g~WeDvl~-~L~--d~~ 169 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR-------EKENVIILEGRWEDVLN-TLP--DKH 169 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc-------cccceEEEecchHhhhc-ccc--ccC
Confidence 568899999999999988775444567788888 9999988875433 23467777778887321 222 567
Q ss_pred ccEEEEcCcc-CCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVV-YHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~l-y~~~~~~~ll~~l~~ll~~g 212 (282)
||-|+- |.. .+-++...+.+.+.+||+|+
T Consensus 170 FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 170 FDGIYY-DTYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred cceeEe-echhhHHHHHHHHHHHHhhhcCCC
Confidence 998886 443 33456777888999999998
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.054 Score=41.45 Aligned_cols=93 Identities=26% Similarity=0.281 Sum_probs=55.4
Q ss_pred EEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC-CCcc
Q 023457 109 ILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG-REFD 184 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~-~~fD 184 (282)
++|+|||+|... .++.... ..++++|. +.++...+..... .. ...+.+...++... .++... ..||
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~---~~~~~~~~~~d 121 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG-----LGLVDFVVADALGG---VLPFEDSASFD 121 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----CCceEEEEeccccC---CCCCCCCCcee
Confidence 999999999977 3332333 37899999 7777774443322 10 11133343333321 012112 3799
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
++......++.. ...++..+.+.++++
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 148 (257)
T COG0500 122 LVISLLVLHLLP-PAKALRELLRVLKPG 148 (257)
T ss_pred EEeeeeehhcCC-HHHHHHHHHHhcCCC
Confidence 994434443333 788999999999987
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0088 Score=56.56 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=56.6
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H-----hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-P-----HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~-----~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++||+|||+|..|-.+.. ..|+.+-. + ..++.+.+ .|+ ...+.+ .+ ...++.+.
T Consensus 119 R~~LDvGcG~aSF~a~l~~---r~V~t~s~a~~d~~~~qvqfale----RGv-----pa~~~~----~~---s~rLPfp~ 179 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLE---RNVTTMSFAPNDEHEAQVQFALE----RGV-----PAMIGV----LG---SQRLPFPS 179 (506)
T ss_pred EEEEeccceeehhHHHHhh---CCceEEEcccccCCchhhhhhhh----cCc-----chhhhh----hc---cccccCCc
Confidence 4799999999999977753 33443333 2 22222211 111 001111 00 12466678
Q ss_pred CCccEEEEcCccCCC-CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 181 REFDVILASDVVYHD-HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~-~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
..||+|-++.|+-.. ..-..++-.+.|+|+|| ++.+++..
T Consensus 180 ~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpG-------Gyfv~S~p 220 (506)
T PF03141_consen 180 NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPG-------GYFVLSGP 220 (506)
T ss_pred cchhhhhcccccccchhcccceeehhhhhhccC-------ceEEecCC
Confidence 899999999887532 23356888899999998 55555544
|
; GO: 0008168 methyltransferase activity |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.2 Score=42.63 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=76.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.++.|+||--|.+.+.+.+... ..+++.|+ +..++.+.+|+..+++ ..++.+...|--. .+ .....+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~----~l-~~~d~~ 86 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLA----VL-ELEDEI 86 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCcc----cc-CccCCc
Confidence 55799999999999999975544 58999999 9999999999999885 4566666533211 11 123479
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCce
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~v 247 (282)
|+|+.+.+-- ..+..+++.-...++. ..-++..+..+....+.|+.. .+|.+
T Consensus 87 d~ivIAGMGG--~lI~~ILee~~~~l~~--------~~rlILQPn~~~~~LR~~L~~--~~~~I 138 (226)
T COG2384 87 DVIVIAGMGG--TLIREILEEGKEKLKG--------VERLILQPNIHTYELREWLSA--NSYEI 138 (226)
T ss_pred CEEEEeCCcH--HHHHHHHHHhhhhhcC--------cceEEECCCCCHHHHHHHHHh--CCcee
Confidence 9999875531 2234444444444432 223444444444445666654 45544
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0024 Score=47.91 Aligned_cols=92 Identities=18% Similarity=0.074 Sum_probs=29.6
Q ss_pred EEeCCCCCHHHHHHHHHhC----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CCCc
Q 023457 110 LELGSGTGLVGMAAAAILG----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GREF 183 (282)
Q Consensus 110 LELGcGtG~~si~la~~~~----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~f 183 (282)
||||+..|..++.+++... .+++++|. +. .+..+++++..+. ..++.+..-+..+ .++.. ..+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~----~l~~~~~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPD----FLPSLPDGPI 70 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THH----HHHHHHH--E
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHH----HHHHcCCCCE
Confidence 7999999998887775432 37999999 64 3333344333222 3355555432211 22222 3689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|+. |.-+..+....-+..+...++|+
T Consensus 71 dli~i-Dg~H~~~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 71 DLIFI-DGDHSYEAVLRDLENALPRLAPG 98 (106)
T ss_dssp EEEEE-ES---HHHHHHHHHHHGGGEEEE
T ss_pred EEEEE-CCCCCHHHHHHHHHHHHHHcCCC
Confidence 99998 44443344555666666777776
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.02 Score=48.93 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=51.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHH---HHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAA---AILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la---~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.++.++||||.|.- .|.-. ...+-+.+++|+ +..++.++.++..|... ...+.++.-.=.+.--......
T Consensus 77 ~~~i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l----~~~I~lr~qk~~~~if~giig~ 150 (292)
T COG3129 77 GKNIRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL----ERAIRLRRQKDSDAIFNGIIGK 150 (292)
T ss_pred cCceEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcch----hhheeEEeccCccccccccccc
Confidence 46678999977742 22211 223568999999 99999999999998321 2223332210000000011122
Q ss_pred CCCccEEEEcCccCCC
Q 023457 180 GREFDVILASDVVYHD 195 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~ 195 (282)
.+.||..+|+.++|..
T Consensus 151 nE~yd~tlCNPPFh~s 166 (292)
T COG3129 151 NERYDATLCNPPFHDS 166 (292)
T ss_pred cceeeeEecCCCcchh
Confidence 5689999999999854
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.21 Score=41.47 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=29.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL 136 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~ 136 (282)
..++.+|||+||..|..+..+-++.+ +.|.++|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 45688999999999999999876663 68999998
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.33 Score=42.89 Aligned_cols=101 Identities=22% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccc------cccC-------------------
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL------ISLR------------------- 157 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~------~~~~------------------- 157 (282)
....+||==|||.|.++..+|. .|..+.+.+. --|+ +..|...|... +-+.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~-~G~~~~gnE~S~~Ml--l~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAK-LGYAVQGNEFSYFML--LASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhh-ccceEEEEEchHHHH--HHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 3467899999999999999984 4789999999 4453 22333334311 0000
Q ss_pred -----------CCcEEEEEEEeCCCCccchhhc---CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 158 -----------GGSVHVAPLRWGEAEANDVAVV---GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 158 -----------~~~v~~~~ld~~~~~~~~~~~~---~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++.....|+.+ +... ...||+|+.+-.+--...+-..+++|.++|+||
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e-----~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLE-----VYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred CCcCcccccCCCCceeEecCccEE-----ecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 0111111111111 1111 368999998744434456778899999999998
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.99 Score=38.09 Aligned_cols=158 Identities=15% Similarity=0.202 Sum_probs=85.7
Q ss_pred ceeehhH-HHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 72 FKLWPAA-TTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 72 ~~~W~~a-~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
.+.|+.- --||.-+..-...+ ...+|.+||=||+.+|..--..+--.+ ..|++++. +.++..+-.-+.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~---------pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~ 121 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNF---------PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE 121 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccC---------CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH
Confidence 5889832 33444443332222 346789999999999987666653334 68999999 765544433332
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
. ..++-..--|-.. ++.....-+..|+|+. |+- .+.+.+-+..+...+|+++ +.++++...
T Consensus 122 ~--------R~Ni~PIL~DA~~--P~~Y~~~Ve~VDviy~-DVA-Qp~Qa~I~~~Na~~FLk~~-------G~~~i~iKA 182 (231)
T COG1889 122 K--------RPNIIPILEDARK--PEKYRHLVEKVDVIYQ-DVA-QPNQAEILADNAEFFLKKG-------GYVVIAIKA 182 (231)
T ss_pred h--------CCCceeeecccCC--cHHhhhhcccccEEEE-ecC-CchHHHHHHHHHHHhcccC-------CeEEEEEEe
Confidence 2 1111111111111 2222222345666665 332 3456788899999999998 445555555
Q ss_pred cCccc----HHHHHHH---Hh-hcCceEEEcccCCCC
Q 023457 229 RRWKK----DSVFFKK---AK-KLFDVETIHADLPCN 257 (282)
Q Consensus 229 ~~~~~----~~~f~~~---~~-~~f~ve~v~~~~~~~ 257 (282)
|.... ..-|-+. ++ .+|++..+-.-.|.+
T Consensus 183 rSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye 219 (231)
T COG1889 183 RSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYE 219 (231)
T ss_pred ecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcc
Confidence 55543 3334323 33 467775444333433
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.066 Score=49.69 Aligned_cols=95 Identities=22% Similarity=0.253 Sum_probs=65.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
+.+|||-=||+|+=|+-.++..+ .+|++-|+ +++++.+++|++.|++.. +++.+...|-.. -+......
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn~----ll~~~~~~ 121 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDANV----LLYSRQER 121 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HHH----HHCHSTT-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHHH----Hhhhcccc
Confidence 45899999999999999997743 69999999 999999999999999631 245555432211 11123568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|=. |++ ....++++...+.++.|
T Consensus 122 fD~IDl-DPf---GSp~pfldsA~~~v~~g 147 (377)
T PF02005_consen 122 FDVIDL-DPF---GSPAPFLDSALQAVKDG 147 (377)
T ss_dssp EEEEEE---S---S--HHHHHHHHHHEEEE
T ss_pred CCEEEe-CCC---CCccHhHHHHHHHhhcC
Confidence 998866 665 45678888888888887
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.17 Score=45.83 Aligned_cols=101 Identities=13% Similarity=-0.011 Sum_probs=61.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEE--EEEEeCCCCccch
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHV--APLRWGEAEANDV 176 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~--~~ld~~~~~~~~~ 176 (282)
++.+|+|||||.|.=...+...+ ...++++|+ .++|+.+..++.... ...+.+ ...|+.+.. ..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------~p~l~v~~l~gdy~~~l-~~l 148 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------FSHVRCAGLLGTYDDGL-AWL 148 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------CCCeEEEEEEecHHHHH-hhc
Confidence 45689999999998655444333 257999999 889988888887211 123444 333443310 011
Q ss_pred hh--cCCCccEEEE-cCccCC--CCCHHHHHHHHHH-HHhcC
Q 023457 177 AV--VGREFDVILA-SDVVYH--DHLFDPLLVTLRL-FLNSG 212 (282)
Q Consensus 177 ~~--~~~~fD~Ii~-sd~ly~--~~~~~~ll~~l~~-ll~~g 212 (282)
+. ......+|+. ...+.+ +.....+++.+++ .++++
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 11 1223455554 345554 3455678889988 88888
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.02 Score=48.56 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=61.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
...|+|.-||.|-.++..| ..+..|+++|+ |.-+..++.|++--|. .+++.+.+.||.+.. ..+......+|
T Consensus 95 ~~~iidaf~g~gGntiqfa-~~~~~VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~-~~lq~~K~~~~ 167 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFA-LQGPYVIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLA-SKLKADKIKYD 167 (263)
T ss_pred cchhhhhhhcCCchHHHHH-HhCCeEEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHH-HHHhhhhheee
Confidence 4489999999999888887 44689999999 9999999999998885 558999998887621 11111233477
Q ss_pred EEEEcCccCC
Q 023457 185 VILASDVVYH 194 (282)
Q Consensus 185 ~Ii~sd~ly~ 194 (282)
+++.+...-.
T Consensus 168 ~vf~sppwgg 177 (263)
T KOG2730|consen 168 CVFLSPPWGG 177 (263)
T ss_pred eeecCCCCCC
Confidence 8888766543
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.08 Score=48.35 Aligned_cols=99 Identities=27% Similarity=0.335 Sum_probs=69.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc-hhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND-VAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~-~~~~~~~ 182 (282)
..+|||-=+|||+=||-.|...+. +|++-|+ |.+.+.++.|+..|.. ....+.+ .+ ... +......
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n---~D--AN~lm~~~~~~ 121 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------EDAEVIN---KD--ANALLHELHRA 121 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------ccceeec---ch--HHHHHHhcCCC
Confidence 679999999999999999977776 8999999 9999999999999932 1222222 11 111 1122467
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|=. |++ ....++++...+..+.+ |-+++.+
T Consensus 122 fd~IDi-DPF---GSPaPFlDaA~~s~~~~------G~l~vTA 154 (380)
T COG1867 122 FDVIDI-DPF---GSPAPFLDAALRSVRRG------GLLCVTA 154 (380)
T ss_pred ccEEec-CCC---CCCchHHHHHHHHhhcC------CEEEEEe
Confidence 897755 665 34556777777777776 4555544
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.51 Score=41.84 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=33.6
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
+|+||-||.|.+++.+...+...|+++|+ +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 79999999999988886444456889999 888888888764
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.28 Score=44.94 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=77.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccc-cCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLIS-LRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~-~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.-.+||=||.|-|+....+.+..+ .+|+.+|+ |+|++.+++|......... ....++++..-|-.+ .+.....
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~----wlr~a~~ 364 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ----WLRTAAD 364 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH----HHHhhcc
Confidence 346899999999999998864432 69999999 9999999866543222111 124566666533222 2222346
Q ss_pred CccEEEEcCccC-CCCC-----HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHH---HHh-hcCceEEEc
Q 023457 182 EFDVILASDVVY-HDHL-----FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFK---KAK-KLFDVETIH 251 (282)
Q Consensus 182 ~fD~Ii~sd~ly-~~~~-----~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~---~~~-~~f~ve~v~ 251 (282)
.||+||.- ..- .... -.++-..+++.++++ |.+ ++-+ ...+...+.||. .++ .||.+...+
T Consensus 365 ~fD~vIVD-l~DP~tps~~rlYS~eFY~ll~~~l~e~------Gl~-VvQa-gs~y~tp~vfw~i~aTik~AG~~~~Pyh 435 (508)
T COG4262 365 MFDVVIVD-LPDPSTPSIGRLYSVEFYRLLSRHLAET------GLM-VVQA-GSPYFTPRVFWRIDATIKSAGYRVWPYH 435 (508)
T ss_pred cccEEEEe-CCCCCCcchhhhhhHHHHHHHHHhcCcC------ceE-EEec-CCCccCCceeeeehhHHHhCcceeeeeE
Confidence 89999973 211 1111 234566677778877 343 3332 233333344443 333 477665444
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.029 Score=50.84 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=57.1
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc--chh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN--DVA 177 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~--~~~ 177 (282)
.++..++|||+|.|.|....++-..++ .+++.++....+..+-..+..|.. ....+|...+.. .++
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~----------t~~td~r~s~vt~dRl~ 179 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS----------TEKTDWRASDVTEDRLS 179 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc----------cccCCCCCCccchhccC
Confidence 456788999999998875544432223 466666664444444444444432 122344432211 111
Q ss_pred h-cCCCccEEEEcCccCCCC---CHHHHHHHHHHHHhcC
Q 023457 178 V-VGREFDVILASDVVYHDH---LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 178 ~-~~~~fD~Ii~sd~ly~~~---~~~~ll~~l~~ll~~g 212 (282)
. ....|++|+..+=+-+.. .+...++.+..++.||
T Consensus 180 lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~g 218 (484)
T COG5459 180 LPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPG 218 (484)
T ss_pred CCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCC
Confidence 1 134688888876655433 3445777788888887
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.11 Score=50.15 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=37.7
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
..++.+|+=+|||. |+.++.+|+..|+.|+++|. ++.++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35688999999996 99999999888999999999 888887765
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.077 Score=47.70 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=37.8
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHH
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~ 145 (282)
...|.+||=+|||+ |++++.+|+..+ ++|+++|+ +.-++.+++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 35688999999996 999999987776 69999999 999999987
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.079 Score=48.87 Aligned_cols=99 Identities=15% Similarity=0.053 Sum_probs=66.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++..++++|||.|-+....+.-..+.+++.|. +.-+...........+ .....+ +.-|-- ..+..+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~-~~~~~~----~~~fedn~ 178 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNF-VVADFG----KMPFEDNT 178 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcce-ehhhhh----cCCCCccc
Confidence 445589999999999999998666689999998 5422222111111110 111112 222211 12334679
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||.+-+.++.-+.+....+++.+.+.++||
T Consensus 179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPG 208 (364)
T ss_pred cCcEEEEeecccCCcHHHHHHHHhcccCCC
Confidence 999999999999999999999999999998
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.42 Score=43.62 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=60.1
Q ss_pred CCCCCcEEEeCCC-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 103 NGCQLNILELGSG-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 103 ~~~g~~VLELGcG-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
..+|.+|+=.|+| .|..++.+|+..+++|+++|. ++-++.+++--+ . ...++.+ ........
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-----------d---~~i~~~~--~~~~~~~~ 227 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-----------D---HVINSSD--SDALEAVK 227 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-----------c---EEEEcCC--chhhHHhH
Confidence 4568899999997 466788888878899999999 777777765211 1 1122322 21222222
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
..||+||..-. ...+....++|+++ |+++++-..
T Consensus 228 ~~~d~ii~tv~-------~~~~~~~l~~l~~~------G~~v~vG~~ 261 (339)
T COG1064 228 EIADAIIDTVG-------PATLEPSLKALRRG------GTLVLVGLP 261 (339)
T ss_pred hhCcEEEECCC-------hhhHHHHHHHHhcC------CEEEEECCC
Confidence 34999987422 34455555677777 565555433
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.1 Score=40.07 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=81.4
Q ss_pred cCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch
Q 023457 100 SLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 100 ~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~ 176 (282)
.+...+|.+|||+.|-.|-=+..+|... .+.|++.|. ..-+..++.|+.+.+. .+.-+.+.|-..+....
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~- 308 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKE- 308 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccc-
Confidence 3466789999999999877666665444 368999999 8888999999988773 23334444332211111
Q ss_pred hhcCCCccEEEE----cC--ccCCCC----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccH
Q 023457 177 AVVGREFDVILA----SD--VVYHDH----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKD 234 (282)
Q Consensus 177 ~~~~~~fD~Ii~----sd--~ly~~~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~ 234 (282)
..++||-|+. +. +++... ....|+.....++++| |-+++-.+..- .+..
T Consensus 309 --~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G------GvLVYSTCSI~-~~EN 379 (460)
T KOG1122|consen 309 --FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG------GVLVYSTCSIT-VEEN 379 (460)
T ss_pred --cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC------cEEEEEeeecc-hhhh
Confidence 2348999994 33 454322 2445666677788887 45554444322 2222
Q ss_pred HHHHHHHhhcC-ceEEEccc
Q 023457 235 SVFFKKAKKLF-DVETIHAD 253 (282)
Q Consensus 235 ~~f~~~~~~~f-~ve~v~~~ 253 (282)
+.-.+.+-..| +++.++..
T Consensus 380 E~vV~yaL~K~p~~kL~p~~ 399 (460)
T KOG1122|consen 380 EAVVDYALKKRPEVKLVPTG 399 (460)
T ss_pred HHHHHHHHHhCCceEecccc
Confidence 23333333344 55555433
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.78 Score=36.40 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=57.0
Q ss_pred EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCC-CccEEEEcCccCCC----------C
Q 023457 130 KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGR-EFDVILASDVVYHD----------H 196 (282)
Q Consensus 130 ~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~-~fD~Ii~sd~ly~~----------~ 196 (282)
+|++.|+ +++++..++++..++. ..++.+..-. -+.+.. ... ++|.++-+- =|-+ +
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~s-----He~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~ 69 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDS-----HENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPE 69 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES------GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECC-----HHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcH
Confidence 6899999 9999999999998774 3355554411 222222 233 789888652 2211 1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCccc------HHHHHHHHh-hcCceEEEc
Q 023457 197 LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKK------DSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 197 ~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~------~~~f~~~~~-~~f~ve~v~ 251 (282)
..-..++.+..+|++| |.+++++ +..+.+. ...|+..+. +.|.|....
T Consensus 70 TTl~Al~~al~lL~~g------G~i~iv~-Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 70 TTLKALEAALELLKPG------GIITIVV-YPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp HHHHHHHHHHHHEEEE------EEEEEEE---STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred HHHHHHHHHHHhhccC------CEEEEEE-eCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 2334556666778887 4544444 4444433 234444443 467776554
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.6 Score=41.20 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCCCCCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 101 LSNGCQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 101 ~~~~~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+.+..|+.|+=+| ---+.|+++|.. .+.+|..+|+ +..+..+.+-++.-+. .++.+..+|..++.++++
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~-- 218 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDL-- 218 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHH--
Confidence 4567899999999 667778877633 3579999999 8899999888877653 356777777777544443
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHH
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLV 203 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~ 203 (282)
..+||+++. |+.+....+..++.
T Consensus 219 -~~kFDvfiT-DPpeTi~alk~Flg 241 (354)
T COG1568 219 -KRKFDVFIT-DPPETIKALKLFLG 241 (354)
T ss_pred -HhhCCeeec-CchhhHHHHHHHHh
Confidence 578998775 55544444444443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.24 Score=44.95 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=61.7
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh--HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL--PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~--~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
...+|+|+|+|.+.-.+.. ...+|-+++. +.+++.+.. +. .+ |....-|.-+ + .++-|
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~-~~-~g---------V~~v~gdmfq----~----~P~~d 238 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPY-LA-PG---------VEHVAGDMFQ----D----TPKGD 238 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhh-hc-CC---------cceecccccc----c----CCCcC
Confidence 6899999999999888876 4455777776 455554433 32 11 2222222222 1 34568
Q ss_pred EEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 185 VILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 185 ~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+|++--++++.. +...+++.++..|+|+ |+++++
T Consensus 239 aI~mkWiLhdwtDedcvkiLknC~~sL~~~------GkIiv~ 274 (342)
T KOG3178|consen 239 AIWMKWILHDWTDEDCVKILKNCKKSLPPG------GKIIVV 274 (342)
T ss_pred eEEEEeecccCChHHHHHHHHHHHHhCCCC------CEEEEE
Confidence 999999999854 5779999999999998 565554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.69 Score=42.47 Aligned_cols=102 Identities=25% Similarity=0.279 Sum_probs=63.1
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch-hhc-
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-AVV- 179 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-~~~- 179 (282)
.+.+|+=+|||+ |++++.+++..+ ++|+++|. +.-++.+++.... .+.+..... + ..... ...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----------~~~~~~~~~-~-~~~~~~~~t~ 235 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----------DVVVNPSED-D-AGAEILELTG 235 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----------eEeecCccc-c-HHHHHHHHhC
Confidence 344999999997 999988887666 68999999 8888888762211 000000000 0 00001 111
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR 230 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~ 230 (282)
...+|++|=+-- ....+..+.++++++ |.++++..+...
T Consensus 236 g~g~D~vie~~G------~~~~~~~ai~~~r~g------G~v~~vGv~~~~ 274 (350)
T COG1063 236 GRGADVVIEAVG------SPPALDQALEALRPG------GTVVVVGVYGGE 274 (350)
T ss_pred CCCCCEEEECCC------CHHHHHHHHHHhcCC------CEEEEEeccCCc
Confidence 236999986432 445777888899998 677776655433
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.34 Score=42.62 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=55.2
Q ss_pred cEEEeCCCC---CHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---
Q 023457 108 NILELGSGT---GLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--- 178 (282)
Q Consensus 108 ~VLELGcGt---G~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--- 178 (282)
-.||||||. |.+- ..|+.. .++|+-+|. |-++...+.-+..+. .++..+..-|..+ +..+-.
T Consensus 71 QFLDlGsGlPT~~nvH-evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------~g~t~~v~aD~r~--p~~iL~~p~ 141 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVH-EVAQRVAPDARVVYVDNDPVVLAHARALLADNP------RGRTAYVQADLRD--PEAILAHPE 141 (267)
T ss_dssp EEEEET--S--SS-HH-HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------TSEEEEEE--TT---HHHHHCSHH
T ss_pred eEEEcccCCCCCCCHh-HHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------CccEEEEeCCCCC--HHHHhcCHH
Confidence 699999993 4433 333333 489999999 888888887766543 2346777777665 322111
Q ss_pred cC-----CCccEEEEcCccCCC---CCHHHHHHHHHHHHhcC
Q 023457 179 VG-----REFDVILASDVVYHD---HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~-----~~fD~Ii~sd~ly~~---~~~~~ll~~l~~ll~~g 212 (282)
.. ...=.+++..++++. ++...+++.+...|.||
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG 183 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence 11 222355666777653 56889999999999998
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.27 Score=42.71 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=47.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..+|+|||||.=.+++...... ++.|++.|+ ..+++.+.+-+...+. ...+...|... + .+....
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------~~~~~v~Dl~~----~--~~~~~~ 172 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------PHDARVRDLLS----D--PPKEPA 172 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-TTT----S--HTTSEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------CcceeEeeeec----c--CCCCCc
Confidence 5699999999999888765222 369999999 9999999887776543 33344333332 1 124568
Q ss_pred cEEEEcCcc
Q 023457 184 DVILASDVV 192 (282)
Q Consensus 184 D~Ii~sd~l 192 (282)
|+.+.--++
T Consensus 173 DlaLllK~l 181 (251)
T PF07091_consen 173 DLALLLKTL 181 (251)
T ss_dssp SEEEEET-H
T ss_pred chhhHHHHH
Confidence 999986443
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.058 Score=47.90 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=61.9
Q ss_pred CCCcEEEeCCCCCHHHH-HHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGM-AAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si-~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+..|.||=+|.|..++ .+..++++.|++.|. |.+++.+++|++.|+.. ++..+...|- ....+...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-----~r~~i~~gd~------R~~~~~~~ 262 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-----DRCRITEGDN------RNPKPRLR 262 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-----HHHHhhhccc------cccCcccc
Confidence 46789999999999998 665566789999999 99999999999999752 2322222111 22233456
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.|-|...-.--....+...+ ++|++.
T Consensus 263 AdrVnLGLlPSse~~W~~A~----k~Lk~e 288 (351)
T KOG1227|consen 263 ADRVNLGLLPSSEQGWPTAI----KALKPE 288 (351)
T ss_pred chheeeccccccccchHHHH----HHhhhc
Confidence 77777654443333444333 456665
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.45 Score=45.06 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=63.6
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHH-HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQ-FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~-~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
.++|.+|||.--+...+-..+-..|+.+|+ +.++..+. .|... ..-......+.. .+...++.||
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--------~~~~~~~~~d~~-----~l~fedESFd 116 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--------RPEMQMVEMDMD-----QLVFEDESFD 116 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--------CcceEEEEecch-----hccCCCccee
Confidence 489999999998888886444478999999 66665544 33321 122333333322 2334467899
Q ss_pred EEEEcCc---cC-------CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 185 VILASDV---VY-------HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 185 ~Ii~sd~---ly-------~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
+||.-.. +. +.......+..+.++++++ |+++.++.
T Consensus 117 iVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~------gk~~svtl 162 (482)
T KOG2352|consen 117 IVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPG------GKYISVTL 162 (482)
T ss_pred EEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccC------CEEEEEEe
Confidence 9986422 22 2223456778888999998 66655554
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.79 Score=41.63 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
++.+||=.|||. |...+.+|+..++ +|+++|. ++-++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 578899899874 7777777777776 7999998 777776654
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.098 Score=48.58 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEe
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRW 168 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~ 168 (282)
..|..|.|+-||.|..++.+++.+ +.|++-|+ +++++.++.|+..|... ..++.+.++|-
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda 308 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDA 308 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccc----hhheeeecccH
Confidence 458899999999999999998665 99999999 99999999999999863 23366666553
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.41 Score=40.27 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=32.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|..|||--||+|..++++. .++.+.+++|+ +...+.+++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 358899999999999999885 78899999999 888877753
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.8 Score=41.23 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=39.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.++..++|-=+|.|--+..++...+ ++|+++|. +.++..+++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 3577999999999999999987653 89999999 9999999887754
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.72 Score=42.23 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh---------CCEEEEEeh-HhHHHHHHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAIL---------GAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~---------~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
...++|||+|+|.+.--+++.. +.++..++. ++....-+.+++
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 4589999999999987665443 468999999 554444444443
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.32 E-value=14 Score=35.54 Aligned_cols=157 Identities=13% Similarity=0.062 Sum_probs=89.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch--
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-- 176 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-- 176 (282)
+..+|.|--||+|..-+.++...+ ..+++.+. +....+++.|...++... .+... .++......
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~---~~dtl~~~~~~ 257 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIR---HGDTLSNPKHD 257 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----ccccc---ccccccCCccc
Confidence 456999999999988777665553 45899998 899999999999888531 11111 111000000
Q ss_pred -hhcCCCccEEEEcCccCCC-------------------------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC
Q 023457 177 -AVVGREFDVILASDVVYHD-------------------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR 230 (282)
Q Consensus 177 -~~~~~~fD~Ii~sd~ly~~-------------------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~ 230 (282)
......||+|+++.++... ......+..+...++|+ |+..+++.+.--
T Consensus 258 ~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~------g~aaivl~~gvl 331 (489)
T COG0286 258 DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG------GRAAIVLPDGVL 331 (489)
T ss_pred ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC------ceEEEEecCCcC
Confidence 1123579999998776510 01256777888888887 566766654322
Q ss_pred cc--cHHHHHHHHhhcCceEEEcccCCC--CCcccceEEEEEeeecCCC
Q 023457 231 WK--KDSVFFKKAKKLFDVETIHADLPC--NGARVGVVVYRMTGKAKSS 275 (282)
Q Consensus 231 ~~--~~~~f~~~~~~~f~ve~v~~~~~~--~~~~~~~~v~~~~~~~~~~ 275 (282)
+. .....-..+.....++.+-.-+.. -.......|+.+.|.+...
T Consensus 332 fr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~ 380 (489)
T COG0286 332 FRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNTGIPTNILFLTKNKPAE 380 (489)
T ss_pred cCCCchHHHHHHHHhccceEEeeeCChhhcccCCCCeEEEEeecCCCCC
Confidence 22 233333333233344433332222 2223445666666665443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.88 Score=40.48 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=40.0
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..+|..|||--||+|..++++. .++.+.+++|+ ++.++.+++.+..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 4568899999999999999875 77899999999 8989998888753
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.32 Score=46.11 Aligned_cols=100 Identities=27% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..++.+|||-=|+||+-+|..|+..+ .+|++-|. +.++..+++|+..|+.. +.+....-|-... .......
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-----~ive~~~~DA~~l-M~~~~~~ 180 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-----DIVEPHHSDANVL-MYEHPMV 180 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-----hhcccccchHHHH-HHhcccc
Confidence 45677999999999999999997775 58999999 99999999999999642 2222222111110 0001112
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
...||+|=. |++ .....+++...+.++.|
T Consensus 181 ~~~FDvIDL-DPy---Gs~s~FLDsAvqav~~g 209 (525)
T KOG1253|consen 181 AKFFDVIDL-DPY---GSPSPFLDSAVQAVRDG 209 (525)
T ss_pred ccccceEec-CCC---CCccHHHHHHHHHhhcC
Confidence 367998865 554 23445666666777776
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.25 Score=44.79 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=53.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHH-------HHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLT-------NLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~-------~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
.+|+.|.|=-.|||.+-+.+| ..|+.|+++|+ -.++. .++.|.+.-+.. ...+.+...|+.+...
T Consensus 207 ~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~~-- 279 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPPL-- 279 (421)
T ss_pred CCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcch--
Confidence 468899999999999988887 78899999999 55554 345555554421 2334555555554211
Q ss_pred hhhcCCCccEEEEcCccC
Q 023457 176 VAVVGREFDVILASDVVY 193 (282)
Q Consensus 176 ~~~~~~~fD~Ii~sd~ly 193 (282)
-. ...||.||| |+-|
T Consensus 280 rs--n~~fDaIvc-DPPY 294 (421)
T KOG2671|consen 280 RS--NLKFDAIVC-DPPY 294 (421)
T ss_pred hh--cceeeEEEe-CCCc
Confidence 11 457999997 5555
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.32 Score=43.03 Aligned_cols=87 Identities=22% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+..++|+|||-|-.... .....+++.|+ ...+..+++ .+...+.. .+ ...++.....||
T Consensus 46 gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~------------~~~~~~~~---ad--~l~~p~~~~s~d 105 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKR------------SGGDNVCR---AD--ALKLPFREESFD 105 (293)
T ss_pred cceeeecccCCcccCcC---CCcceeeecchhhhhcccccc------------CCCceeeh---hh--hhcCCCCCCccc
Confidence 77999999999864421 12357889998 666555543 11101111 11 222344467899
Q ss_pred EEEEcCccCCCCC---HHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHL---FDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g 212 (282)
.+++.-+++|... -..+++.+.+.++||
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 9999999998654 457888888899998
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.97 E-value=5.1 Score=34.91 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=93.2
Q ss_pred CccceeehhH---HHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 69 GLSFKLWPAA---TTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 69 g~g~~~W~~a---~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
|++ ++|.+. ..|..||...... +.+.+ |..=||+=.++-.+. +..-++.++++ +.-...++
T Consensus 63 GI~-RL~~a~~lpa~l~~yl~~i~~l------------N~~~~-l~~YpGSP~lA~~ll-R~qDRl~l~ELHp~D~~~L~ 127 (279)
T COG2961 63 GIA-RLWQAADLPAELEPYLDAVRQL------------NPGGG-LRYYPGSPLLARQLL-REQDRLVLTELHPSDAPLLR 127 (279)
T ss_pred HHH-HHHhcCCchHHHHHHHHHHHHh------------CCCCC-cccCCCCHHHHHHHc-chhceeeeeecCccHHHHHH
Confidence 444 777754 5666777554421 22333 666777766665554 33468999999 88888888
Q ss_pred HHHHhcccccccCCCcEEEEEEE-eCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEE
Q 023457 145 FNVDANAGLISLRGGSVHVAPLR-WGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNF 223 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld-~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~i 223 (282)
.|... ..++.+...| |.. ....++ +..+--+|+.-..+....+++.+++++...++.=+ ++++.
T Consensus 128 ~~f~~--------d~~vrv~~~DG~~~-l~a~LP-P~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~-----~g~ya 192 (279)
T COG2961 128 NNFAG--------DRRVRVLRGDGFLA-LKAHLP-PKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFA-----TGTYA 192 (279)
T ss_pred HHhCC--------CcceEEEecCcHHH-HhhhCC-CCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhc-----CceEE
Confidence 88773 3466666644 221 011121 13445678876666677889999999999887642 45566
Q ss_pred EEEeecCcccHHHHHHHHhh
Q 023457 224 VMAHLRRWKKDSVFFKKAKK 243 (282)
Q Consensus 224 l~~~~~~~~~~~~f~~~~~~ 243 (282)
+.+........+.|++.++.
T Consensus 193 iWYPik~r~~~~~f~~~L~~ 212 (279)
T COG2961 193 IWYPIKDRRQIRRFLRALEA 212 (279)
T ss_pred EEEeecchHHHHHHHHHHhh
Confidence 66666666677888888764
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.6 Score=37.63 Aligned_cols=45 Identities=20% Similarity=0.108 Sum_probs=38.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.+|..|||--||+|..++++. ..+.+++++|+ +...+.+.+.+..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHH
Confidence 458899999999999998885 67899999999 8888888777654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.88 Score=43.38 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=56.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H----hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-P----HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~----~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
=.+|+|..+|.|-.+-++. ...|+..-. + ..+..+-. .| -+. .-.||-+ .++..+
T Consensus 366 iRNVMDMnAg~GGFAAAL~---~~~VWVMNVVP~~~~ntL~vIyd----RG--------LIG-~yhDWCE----~fsTYP 425 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALI---DDPVWVMNVVPVSGPNTLPVIYD----RG--------LIG-VYHDWCE----AFSTYP 425 (506)
T ss_pred eeeeeeecccccHHHHHhc---cCCceEEEecccCCCCcchhhhh----cc--------cch-hccchhh----ccCCCC
Confidence 4589999999998775553 234555554 3 23333321 12 122 2347776 445457
Q ss_pred CCccEEEEcCccCC---CCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYH---DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~---~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|-++.++-. .-.++.++-.+.|+|+|+
T Consensus 426 RTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~ 460 (506)
T PF03141_consen 426 RTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPG 460 (506)
T ss_pred cchhheehhhhhhhhcccccHHHHHHHhHhhcCCC
Confidence 89999999877643 235788999999999998
|
; GO: 0008168 methyltransferase activity |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.41 Score=40.35 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
...+.|||||.|-+-+.++...+ ..+.+.++ ..+-+.++..|....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 45799999999999888876655 46889999 888888888887543
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.4 Score=37.63 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=35.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
.+-++.|=.||.|.+--.+....+ ..|+++|+ +++++.+++|+.+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 356899999999998766653333 58999999 99999999999754
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.48 E-value=5.3 Score=36.07 Aligned_cols=89 Identities=13% Similarity=-0.043 Sum_probs=53.4
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+|.+||=.|+|. |...+.+|+..+++|++++. ++-++.+++ .+. +. + ++-.+ . ...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga------~~--v--i~~~~--~-----~~~ 222 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGA------AS--A--GGAYD--T-----PPE 222 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCC------ce--e--ccccc--c-----Ccc
Confidence 4588999999863 66667777777788999998 666666554 110 01 0 01001 0 023
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.+|+++-.+.. ...+....++++++ |+++++.
T Consensus 223 ~~d~~i~~~~~------~~~~~~~~~~l~~~------G~~v~~G 254 (329)
T TIGR02822 223 PLDAAILFAPA------GGLVPPALEALDRG------GVLAVAG 254 (329)
T ss_pred cceEEEECCCc------HHHHHHHHHhhCCC------cEEEEEe
Confidence 57877765443 23566667788888 6665544
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=88.22 E-value=3 Score=35.31 Aligned_cols=105 Identities=14% Similarity=0.019 Sum_probs=52.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+...|+|+|.-.|--.+..|..+ .++|+++|+ ....... .++.+. ...++++.+.+-.+ +..+..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp-----~~~rI~~i~Gds~d--~~~~~~ 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHP-----MSPRITFIQGDSID--PEIVDQ 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSS--THHHHT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcc-----ccCceEEEECCCCC--HHHHHH
Confidence 46799999999888777776433 379999999 3221111 111111 24678888765544 222221
Q ss_pred c-----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 179 V-----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 179 ~-----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
. ..... +++-|.=|.....-..++....++++| .++++..
T Consensus 103 v~~~~~~~~~v-lVilDs~H~~~hvl~eL~~y~plv~~G-------~Y~IVeD 147 (206)
T PF04989_consen 103 VRELASPPHPV-LVILDSSHTHEHVLAELEAYAPLVSPG-------SYLIVED 147 (206)
T ss_dssp SGSS----SSE-EEEESS----SSHHHHHHHHHHT--TT--------EEEETS
T ss_pred HHHhhccCCce-EEEECCCccHHHHHHHHHHhCccCCCC-------CEEEEEe
Confidence 1 12233 444477777777888888899999987 6666543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.12 E-value=4.2 Score=37.02 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=25.9
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~ 136 (282)
++.+||=+|||. |.+.+.+|+..+++|++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 578999999874 77777777777889999985
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.93 E-value=18 Score=33.46 Aligned_cols=143 Identities=15% Similarity=0.100 Sum_probs=77.5
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC-----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG-----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~-----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
...+|.+|||+.|..|.=++.+....- ..|++-|. +.-+..+...+..-. .....+.+.+-.......
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------SPNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------Ccceeeecccceeccccc
Confidence 345688999999999998877664432 28999999 665555555443211 112222222211110000
Q ss_pred ---h-hhcCCCccEEEE-----cCccCCC-C-----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 176 ---V-AVVGREFDVILA-----SDVVYHD-H-----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 176 ---~-~~~~~~fD~Ii~-----sd~ly~~-~-----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
. +.....||-|++ .|..... . ..-.++..-.++|++| |.+++-.+..
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~G------G~lVYSTCSL 299 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVG------GRLVYSTCSL 299 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCC------CEEEEeccCC
Confidence 0 111347998886 2322210 0 1234666677899998 7877765543
Q ss_pred cCc---ccHHHHHHHHhhcCceEEEcccCCC
Q 023457 229 RRW---KKDSVFFKKAKKLFDVETIHADLPC 256 (282)
Q Consensus 229 ~~~---~~~~~f~~~~~~~f~ve~v~~~~~~ 256 (282)
... ...+..++.+...+.+..+..+.+.
T Consensus 300 npieNEaVV~~~L~~~~~~~~lv~~~~~lp~ 330 (375)
T KOG2198|consen 300 NPIENEAVVQEALQKVGGAVELVDVSGDLPG 330 (375)
T ss_pred CchhhHHHHHHHHHHhcCcccceeecccccc
Confidence 332 2345555555556666555555443
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.4 Score=40.69 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEehH
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDLP 137 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~~ 137 (282)
-..|+|+|+|.|.++-+++...+-.|.++|-.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 35899999999999999987778899999983
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.89 E-value=0.96 Score=39.10 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=41.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh---cccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA---NAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~---n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|||.=||-|.=++.+| ..|++|++++. +-+..+++.-+.. +.........++++..-|-.+ -+......
T Consensus 77 ~~VLDaTaGLG~Da~vlA-~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~----~L~~~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA-SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE----YLRQPDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHH-HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC----HCCCHSS-
T ss_pred CEEEECCCcchHHHHHHH-ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH----HHhhcCCC
Confidence 389999999999999998 56889999999 6554444433332 111000011356666544333 12233578
Q ss_pred ccEEEEcCccCC
Q 023457 183 FDVILASDVVYH 194 (282)
Q Consensus 183 fD~Ii~sd~ly~ 194 (282)
||+|.. |++|.
T Consensus 152 ~DVVY~-DPMFp 162 (234)
T PF04445_consen 152 FDVVYF-DPMFP 162 (234)
T ss_dssp -SEEEE---S--
T ss_pred CCEEEE-CCCCC
Confidence 999998 66664
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.25 E-value=2.5 Score=32.23 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chhhc--CCCccEEEEcC
Q 023457 115 GTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVAVV--GREFDVILASD 190 (282)
Q Consensus 115 GtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~~~--~~~fD~Ii~sd 190 (282)
|.|+..+.+|+..+++|+++|. +.-++.+++. + .-..+++.+.+.. .+... ...+|+||-+-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----G----------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----G----------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----c----------ccccccccccccccccccccccccceEEEEec
Confidence 5688999999888999999999 7777777651 1 0122344442111 11111 24799998642
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 191 VVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 191 ~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
-....++....+++++ |+++++..+
T Consensus 67 ------g~~~~~~~~~~~l~~~------G~~v~vg~~ 91 (130)
T PF00107_consen 67 ------GSGDTLQEAIKLLRPG------GRIVVVGVY 91 (130)
T ss_dssp ------SSHHHHHHHHHHEEEE------EEEEEESST
T ss_pred ------CcHHHHHHHHHHhccC------CEEEEEEcc
Confidence 2356788888899998 666665543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.24 E-value=5.7 Score=38.48 Aligned_cols=97 Identities=24% Similarity=0.341 Sum_probs=59.6
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCC--------
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAE-------- 172 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~-------- 172 (282)
..++.+|+=+|||. |+..+.+++..++.|+++|. +..++.++. +.. .+..++..+..
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa------------~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA------------EFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC------------eEEecccccccccccccee
Confidence 34578999999995 88888888888899999999 776666654 111 11111110000
Q ss_pred --ccc--------hhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 173 --AND--------VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 173 --~~~--------~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+ +......+|+||.+-.+-......-+.+.+.+.+++|
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG 277 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG 277 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC
Confidence 000 1112357999998765544444444666677788887
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.89 E-value=12 Score=34.87 Aligned_cols=107 Identities=22% Similarity=0.149 Sum_probs=64.8
Q ss_pred ceeehhH-HHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhc
Q 023457 72 FKLWPAA-TTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDAN 150 (282)
Q Consensus 72 ~~~W~~a-~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n 150 (282)
.+.|+++ ..|.+++.... ..+ +||=|+=.-|.++..++. .+. ...+|.--.-..++.|+..|
T Consensus 25 l~awdaade~ll~~~~~~~--------------~~~-~~~i~nd~fGal~~~l~~-~~~-~~~~ds~~~~~~~~~n~~~n 87 (378)
T PRK15001 25 LQAWEAADEYLLQQLDDTE--------------IRG-PVLILNDAFGALSCALAE-HKP-YSIGDSYISELATRENLRLN 87 (378)
T ss_pred ccccccHHHHHHHHHhhcc--------------cCC-CEEEEcCchhHHHHHHHh-CCC-CeeehHHHHHHHHHHHHHHc
Confidence 5799987 34444442211 112 799999999999999973 222 34467644456678899999
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC---CHHHHHHHHHHHHhcC
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH---LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~---~~~~ll~~l~~ll~~g 212 (282)
+.. ...+... +-. +.....+|+|+. |.++ ..+..+..+...+.++
T Consensus 88 ~~~----~~~~~~~--~~~-------~~~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~~ 135 (378)
T PRK15001 88 GID----ESSVKFL--DST-------ADYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSD 135 (378)
T ss_pred CCC----cccceee--ccc-------ccccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCCCC
Confidence 852 1122222 111 112456999886 3333 3556677777788877
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.81 E-value=5.2 Score=32.15 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
.+..+.+|||+|-|.+-+.+++.+...-+++++ +-.+...+...-+.+.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~ 120 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC 120 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc
Confidence 444689999999999999998665578899999 8777777666555553
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.2 Score=33.60 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=23.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~ 136 (282)
....+|||||.|++.-.+.+ -|-.=.++|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~-EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNS-EGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHh-CCCCcccccc
Confidence 44799999999999888864 3455667776
|
; GO: 0008168 methyltransferase activity |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.14 E-value=20 Score=32.48 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.4
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+.||+|+.+-.+-....+-..+++|.++|+||
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence 36999998854444556778899999999998
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=23 Score=33.98 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~ 147 (282)
....+++||-||.|-+++.+-..+...|.++|+ +.+.+.-+.|.
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 446799999999999988875444456789999 87777777764
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.47 E-value=5 Score=35.19 Aligned_cols=41 Identities=34% Similarity=0.353 Sum_probs=30.1
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHHHH
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNLQF 145 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~~~ 145 (282)
++.+||=+|+|+ |++.+.+|+..+.+ |+++|. +.-++.+++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 578899999874 77777777777765 899998 665555544
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=85.31 E-value=2.4 Score=39.24 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=58.4
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhccccccc---CCCcEEEEEEEeCCCCccchh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISL---RGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~---~~~~v~~~~ld~~~~~~~~~~ 177 (282)
..++....|||+|.|-+..++|...+ +.=+++.+ ...-+.+..|...+....+. ....+.....++.+ +....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~--~~~v~ 267 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD--PKRVT 267 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC--HHHHH
Confidence 34577899999999998877764443 34445555 33222222222222111000 12334444444444 22222
Q ss_pred hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 178 VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
......++|+++.+.+.++..-.+- .+..-+++|
T Consensus 268 eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~g 301 (419)
T KOG3924|consen 268 EIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDG 301 (419)
T ss_pred HHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCc
Confidence 3356789999999998876555444 444455555
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.95 E-value=26 Score=30.65 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=38.1
Q ss_pred CCCccceeehh-HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh
Q 023457 67 SQGLSFKLWPA-ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL 136 (282)
Q Consensus 67 ~~g~g~~~W~~-a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~ 136 (282)
..-+-.++|.. --.||.-|.--.+. .+..+|.+||=||+++|..--..+--.+ ..|++++.
T Consensus 126 ~~kvEyRVWnPfrSKLAA~I~gGvdn---------ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEf 189 (317)
T KOG1596|consen 126 DGKVEYRVWNPFRSKLAAGILGGVDN---------IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEF 189 (317)
T ss_pred CCcEEEEEeChHHHHHHHHhhcCccc---------eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEe
Confidence 33556799983 23444444222211 1566799999999999986544442333 57999998
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=84.65 E-value=5.2 Score=35.73 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=27.9
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHH
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNL 143 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~ 143 (282)
++.+||=+|||. |+..+.+|+..+++ |+++|. +.-++.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 467888889874 77888787777765 667887 6554444
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=84.18 E-value=21 Score=29.03 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=63.5
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLIS 155 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~ 155 (282)
+++..|++.+.+.. ..+.+|+=|||=+-...+.-......+++..|+..-....
T Consensus 10 ~T~~~l~~~l~~~~--------------~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~------------ 63 (162)
T PF10237_consen 10 ETAEFLARELLDGA--------------LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF------------ 63 (162)
T ss_pred HHHHHHHHHHHHhc--------------CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc------------
Confidence 35566777775543 2256899998866444443311234688999983211111
Q ss_pred cCCCcEEEEEEEeCCCCccchh-hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 156 LRGGSVHVAPLRWGEAEANDVA-VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 156 ~~~~~v~~~~ld~~~~~~~~~~-~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
... .+...|... +..++ ...++||+||+=.++...+-......+++.+++++
T Consensus 64 --~~~-~F~fyD~~~--p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~ 116 (162)
T PF10237_consen 64 --GGD-EFVFYDYNE--PEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPG 116 (162)
T ss_pred --CCc-ceEECCCCC--hhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCcc
Confidence 112 344555555 33333 22579999999777756666677788888888886
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.90 E-value=2 Score=37.46 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=29.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC---------CEEEEEeh-HhHHHHHHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAILG---------AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~---------~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..+|+|+|+|+|.++.-++..+. .+++.++. +.+.+.-++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 36999999999999888775543 47999999 665555555443
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.64 E-value=3.4 Score=38.49 Aligned_cols=73 Identities=23% Similarity=0.441 Sum_probs=45.5
Q ss_pred CcEEEeCCCCCHHHHHHHHHh---C-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 107 LNILELGSGTGLVGMAAAAIL---G-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~---~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++||=|||| .+|..+|..+ + .+|++.|. .+-+..+..+. ..+++...+|..+ ...+.....
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------~~~v~~~~vD~~d--~~al~~li~ 67 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------GGKVEALQVDAAD--VDALVALIK 67 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------cccceeEEecccC--hHHHHHHHh
Confidence 479999995 3444433332 3 69999999 66666655432 2267778887776 333333456
Q ss_pred CccEEEEcCccC
Q 023457 182 EFDVILASDVVY 193 (282)
Q Consensus 182 ~fD~Ii~sd~ly 193 (282)
.+|+||.+-.-|
T Consensus 68 ~~d~VIn~~p~~ 79 (389)
T COG1748 68 DFDLVINAAPPF 79 (389)
T ss_pred cCCEEEEeCCch
Confidence 679999764433
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.62 E-value=17 Score=32.94 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=74.0
Q ss_pred hHHHHHHHHhhcCCCCCCCcccc-cCCCCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccc
Q 023457 77 AATTLVTLLDQFCSHPSNSPLAS-SLSNGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL 153 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~-~~~~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~ 153 (282)
+++.-+.||++.... .+.+. ...-....+|.=||.|. |..+--+|.-+++.|+..|+ .+-+..+..-.
T Consensus 141 a~q~Ga~~lek~~GG---~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f------ 211 (371)
T COG0686 141 AAQAGAYYLEKTNGG---KGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF------ 211 (371)
T ss_pred HHHHHHHHHHhccCC---ceeEecCCCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh------
Confidence 456667787665421 11111 11334556788899885 77776666667899999999 66666554421
Q ss_pred cccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 154 ISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 154 ~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++...- .. +..+...-.+.|+||++=.+-....+..+.+.+.+.++||
T Consensus 212 ----~~rv~~~~---st--~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpG 261 (371)
T COG0686 212 ----GGRVHTLY---ST--PSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPG 261 (371)
T ss_pred ----CceeEEEE---cC--HHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCC
Confidence 22333322 11 2233333568999999877766677777788888888887
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.89 E-value=13 Score=37.23 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=23.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-------C------CEEEEEeh
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-------G------AKVTVTDL 136 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-------~------~~V~~tD~ 136 (282)
.-+|+|+|=|+|+..+.+.+.. . -+++.++.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 4689999999999988776444 1 26788886
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=82.12 E-value=8.9 Score=35.15 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=30.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.++.+||=+|+|. |...+.+|+..++ +|+++|. +.-++.+++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 4577888899864 6667777776676 6999998 776666643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.85 E-value=8.9 Score=34.76 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=29.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHH-h-CCEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAI-L-GAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~-~-~~~V~~tD~-~~~l~~~~ 144 (282)
.+|.+||=+|||. |++.+.++++ . +++|+++|. +.-++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 3578999999874 7766666654 3 468999998 66566654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=81.63 E-value=9.2 Score=34.03 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=31.5
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
..+.+||-.|+| .|...+.+|+..+.+|++++. +...+.++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 346788888876 377777788777889999998 766666643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=81.53 E-value=3.9 Score=36.00 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh------CCEEEEEeh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL------GAKVTVTDL 136 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~------~~~V~~tD~ 136 (282)
+...++|+|||.|.+|..++... ...++++|.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 45689999999999999998666 258999998
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=81.17 E-value=4.1 Score=31.70 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCH-HHHHHHHHhCCEEEEEeh-Hh
Q 023457 80 TLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGL-VGMAAAAILGAKVTVTDL-PH 138 (282)
Q Consensus 80 ~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~-~si~la~~~~~~V~~tD~-~~ 138 (282)
.+|+|+.+... ..+|+|+|-|.=. ++..++ ..+..|++||+ +.
T Consensus 3 ~~a~~ia~~~~---------------~~kiVEVGiG~~~~vA~~L~-~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLNN---------------YGKIVEVGIGFNPEVAKKLK-ERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS----------------SSEEEEET-TT--HHHHHHH-HHS-EEEEE-SS-S
T ss_pred hHHHHHHHhCC---------------CCcEEEECcCCCHHHHHHHH-HcCCcEEEEECccc
Confidence 46888865432 3399999999744 455554 55699999999 65
|
; PDB: 2K4M_A. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.29 E-value=2.9 Score=40.96 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=38.8
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-H
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-P 137 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~ 137 (282)
.=++|+-|.+.-.++. ...++..||||||..|.+..++++.++ .-|+++|+ |
T Consensus 25 rsRsaFKLlQln~ky~------------fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 25 RSRSAFKLLQLNKKYK------------FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred hHHHHHHHHHHHHHhc------------cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 3356666666554443 235678999999999999999987765 68999998 5
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=80.13 E-value=5.1 Score=36.50 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.++.+||=.|||. |...+.+|+..++ +|+++|. +.-++.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4578999899864 7777777777776 5999998 766666643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 282 | ||||
| 3bzb_A | 281 | Crystal Structure Of Uncharacterized Protein Cmq451 | 1e-04 |
| >pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From The Primitive Red Alga Cyanidioschyzon Merolae Length = 281 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 7e-32
Identities = 53/262 (20%), Positives = 101/262 (38%), Gaps = 36/262 (13%)
Query: 43 SSSSETEQHYMPS---IESTLVIRQLPSQGL-SFKLWPAATTLVTLLDQFCSHPSNSPLA 98
S E++ P+ ++ ++ ++ L + +W A L D C P
Sbjct: 25 RQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGA---RALADTLCWQPE----- 76
Query: 99 SSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPH--VLTNLQFNVDAN----AG 152
L G + ELG+G GLV + A +V TD P +L +L+ N+ +
Sbjct: 77 --LIAGK--TVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCS 132
Query: 153 LISLRGGSVHVAPLRWGEAEANDVAVVGRE-FDVILASDVVYHDHLFDPLLVTLRLFLNS 211
+++ S V P RWG++ + G + F V+L +D++ D LL ++++ L
Sbjct: 133 SETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLAL 192
Query: 212 GEPEPKKKK-MNFVMAHLRRWKKDSVFFKKAKKL-FDVETIH-----------ADLPCNG 258
+P + F ++D FF+ + D
Sbjct: 193 PANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPDDPGDVC 252
Query: 259 ARVGVVVYRMTGKAKSSKSSSQ 280
R V +R+ ++ +S S++
Sbjct: 253 IRGQVHRWRLRWRSAASASANI 274
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-06
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 26/161 (16%)
Query: 96 PLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLIS 155
L SLS+G N LE+G G A ++TV D+ + G
Sbjct: 42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAP-HCKRLTVIDV----------MPRAIGRAC 90
Query: 156 LR-GGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEP 214
R H+ W + + FD+I+ ++V+Y+ + + + P
Sbjct: 91 QRTKRWSHI---SWAATDILQFSTAEL-FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAP 146
Query: 215 EPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLP 255
V R + ET+ L
Sbjct: 147 GGH-----LVFGSARDATCRRWGH-----VAGAETVITILT 177
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-06
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 107 LNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPL 166
+L++G +G +G A G +V+ ++A + +
Sbjct: 34 KEVLDIGCSSGALGAAIKE-NGTRVSG-------------IEAFPEAAEQ--AKEKLDHV 77
Query: 167 RWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLV 203
G+ E D+ +FD ++ DV+ +HLFDP V
Sbjct: 78 VLGDIETMDMPYEEEQFDCVIFGDVL--EHLFDPWAV 112
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-05
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 109 ILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDAN--AGLISLRGGSVHVAP 165
I ++G GTG M A + +VT D + N + ++ GS+ P
Sbjct: 50 IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109
Query: 166 LRWGEAEANDVAVVGREFDVILASDVVYH 194
E D+I + +Y+
Sbjct: 110 F-----RNE-------ELDLIWSEGAIYN 126
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 1e-04
Identities = 40/288 (13%), Positives = 85/288 (29%), Gaps = 61/288 (21%)
Query: 1 MATQENDEDDMEINPAKMLFPADETHGNGPLPMAMLTQDTLTSSSSETEQHYM---PSIE 57
+ + E +E+ K+L+ D + + + S + + P
Sbjct: 189 LKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYEN 245
Query: 58 STLVIRQLPSQGLSFKLWPA----ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELG 113
LV+ + + K W A L+T + LS +I
Sbjct: 246 CLLVLLNVQNA----KAWNAFNLSCKILLT--------TRFKQVTDFLSAATTTHISLDH 293
Query: 114 SGTGLVGMAAAAILGAKVT---VTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170
L ++L K DLP + + N +S+ S+ W
Sbjct: 294 HSMTLTPDEVKSLL-LKYLDCRPQDLPREV------LTTNPRRLSIIAESIRDGLATWDN 346
Query: 171 AEANDVAVVGREFDVILAS-DVVYHDHLFDPLLV----------TL-RLFLNSGEPEPKK 218
+ + + + L + + +FD L V L ++ + + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 219 KKMNFVMAHLR------RWKKD------SVFFKKAKKLFDVETIHADL 254
V+ L + K+ S++ + KL + +H +
Sbjct: 407 -----VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 16/105 (15%)
Query: 90 SHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDA 149
+ + L + G IL++GSGTG A+ LG ++ ++
Sbjct: 26 AEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLAS-LGHQIE-------------GLEP 71
Query: 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH 194
L+ L + + D++ + + +LA + H
Sbjct: 72 ATRLVEL--ARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 10/145 (6%)
Query: 109 ILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDAN--AGLISLRGGSVHVAPL 166
+L++GSGTG++ M AA KV + + V AN ++++ G V L
Sbjct: 70 VLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL 129
Query: 167 RWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226
E D+ + + + Y L L + G P + +
Sbjct: 130 ---PVEKVDIIISE-----WMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAI 181
Query: 227 HLRRWKKDSVFFKKAKKLFDVETIH 251
R++K + + + FD+ I
Sbjct: 182 EDRQYKDYKIHWWENVYGFDMSCIK 206
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 6e-04
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 109 ILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRW 168
I ++G GTG + A + ++T + ++ + V +
Sbjct: 50 IADIGCGTGGQTLFLADYVKGQIT------GIDLFPDFIEIFNENAVKANCADRVKGIT- 102
Query: 169 GEAEANDVAVVGREFDVILASDVVYH 194
+++ E D+I + +Y+
Sbjct: 103 --GSMDNLPFQNEELDLIWSEGAIYN 126
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL---ISLRGGSVHV 163
+++GSG G + +A A + D H+ N+ A+A L I + G VH
Sbjct: 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNI-ADANLNDRIQIVQGDVHN 104
Query: 164 APLRWGEAEANDVAVVGREFDVILASDVVYH 194
P+ E N D+I++ V+
Sbjct: 105 IPI-----EDN-------YADLIVSRGSVFF 123
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 9e-04
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 97 LASSLSNGCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLI 154
LAS +++ I +LG+G G GMA AA L A+VT+ + + + +++
Sbjct: 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA 87
Query: 155 SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILAS 189
V A + + + F ++ +
Sbjct: 88 FSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.84 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.61 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.55 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.54 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.53 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.52 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.52 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.51 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.51 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.51 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.51 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.5 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.49 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.48 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.48 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.48 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.47 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.47 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.47 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.47 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.46 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.46 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.46 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.46 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.46 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.45 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.45 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.44 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.44 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.44 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.43 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.42 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.42 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.41 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.41 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.41 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.4 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.4 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.4 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.4 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.39 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.39 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.38 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.38 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.38 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.38 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.38 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.38 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.38 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.37 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.37 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.37 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.37 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.37 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.36 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.36 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.36 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.36 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.35 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.35 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.35 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.35 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.35 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.34 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.34 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.34 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.33 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.33 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.33 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.32 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.32 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.31 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.31 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.31 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.31 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.3 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.3 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.3 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.3 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.3 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.3 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.29 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.29 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.29 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.29 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.29 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.29 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.28 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.28 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.28 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.28 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.27 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.27 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.27 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.26 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.26 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.26 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.26 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.26 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.25 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.24 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.24 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.24 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.24 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.24 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.23 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.23 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.23 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.22 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.22 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.22 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.22 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.22 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.22 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.22 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.22 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.22 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.21 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.21 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.21 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.2 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.2 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.19 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.19 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.19 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.18 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.18 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.18 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.18 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.18 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.18 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.18 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.17 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.17 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.17 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.17 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.16 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.16 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.15 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.15 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.15 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.15 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.15 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.14 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.14 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.12 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.12 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.12 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.11 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.11 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.11 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.1 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.1 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.1 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.1 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.1 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.1 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.09 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.09 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.09 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.08 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.08 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.08 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.08 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.07 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.07 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.07 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.07 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.06 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.06 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.06 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.06 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.05 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.05 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.05 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.04 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.04 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.04 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.04 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.04 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.03 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.03 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.03 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.03 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.03 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.02 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.02 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.02 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.01 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.01 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.01 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.0 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.0 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.99 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.99 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.98 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.98 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.98 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.97 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.97 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.97 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.97 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.97 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.97 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.96 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.96 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.96 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.95 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.95 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.94 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.94 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.94 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.93 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.92 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.91 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.9 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.88 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.88 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.88 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.88 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.87 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.85 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.85 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.84 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.84 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.83 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.82 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.82 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.82 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.82 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.81 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.81 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.8 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.78 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.78 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.77 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.75 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.74 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.72 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.71 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.69 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.69 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.67 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.65 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.65 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.64 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.6 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.59 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.59 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.57 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.5 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.5 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.49 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.46 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.44 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.43 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.41 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.41 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.4 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.36 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.33 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.31 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.31 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.29 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.19 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.15 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.13 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.12 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.12 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.11 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.09 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.07 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.02 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.86 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.81 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.73 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.72 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.68 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.58 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.49 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.46 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.39 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.38 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.13 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.02 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.01 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.99 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.98 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.94 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.79 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.66 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.34 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.23 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.03 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.65 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.63 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.6 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.52 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.8 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.8 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 93.42 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.15 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.07 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 93.06 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.9 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 92.88 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 92.57 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.5 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.28 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 92.07 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.63 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 91.49 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 91.38 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.38 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 91.08 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 90.74 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.15 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 88.32 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 88.12 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 87.66 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 87.4 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 87.25 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 86.6 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 85.49 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 83.71 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 83.25 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 82.04 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 81.68 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 81.38 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 81.37 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 81.19 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 81.09 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 80.88 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 80.64 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 80.53 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 80.28 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 80.13 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 80.04 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=161.91 Aligned_cols=197 Identities=21% Similarity=0.310 Sum_probs=124.7
Q ss_pred eEEEEEeCCCC-ccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 59 TLVIRQLPSQG-LSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 59 ~i~i~~~~~~g-~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
.+.++...... .|..+|+++..|++++..+.. ..++++|||||||+|.+++.+++.+..+|+++|+
T Consensus 44 ~~~~~i~g~~~~~g~~~~~~~~~l~~~l~~~~~------------~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s 111 (281)
T 3bzb_A 44 SVQVQTTQEHPLWTSHVWSGARALADTLCWQPE------------LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYP 111 (281)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHCGG------------GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECS
T ss_pred CeEEEECCCCCCCCceeecHHHHHHHHHHhcch------------hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCC
Confidence 34444444333 377899999999999987542 2357899999999999999998654459999999
Q ss_pred -HhHHHHHHHHHHhcccccccCC----CcEEEEEEEeCCCCccchhh--cCCCccEEEEcCccCCCCCHHHHHHHHHHHH
Q 023457 137 -PHVLTNLQFNVDANAGLISLRG----GSVHVAPLRWGEAEANDVAV--VGREFDVILASDVVYHDHLFDPLLVTLRLFL 209 (282)
Q Consensus 137 -~~~l~~~~~n~~~n~~~~~~~~----~~v~~~~ld~~~~~~~~~~~--~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll 209 (282)
+.+++.++.|+..|........ .++.+..++|++... .+.. ...+||+|++++++|+......+++++.++|
T Consensus 112 ~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~L 190 (281)
T 3bzb_A 112 DPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPD-SLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLL 190 (281)
T ss_dssp CHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTH-HHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccH-HHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHh
Confidence 5899999999965532110001 367888889987321 2211 2468999999999999999999999999999
Q ss_pred h---c--CCCCCCCceEEEEEEeecCc--ccHHHHHHHHh-hc-CceEEEccc----------CCCCCcccceEEEEEee
Q 023457 210 N---S--GEPEPKKKKMNFVMAHLRRW--KKDSVFFKKAK-KL-FDVETIHAD----------LPCNGARVGVVVYRMTG 270 (282)
Q Consensus 210 ~---~--g~~~~~~g~~~il~~~~~~~--~~~~~f~~~~~-~~-f~ve~v~~~----------~~~~~~~~~~~v~~~~~ 270 (282)
+ + + |.+++++...+.. .....|+..++ .| |.++.+... ...+..+..+.+|++++
T Consensus 191 k~~~p~~g------G~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~~~f~~~~~~~~~r~~V~~~~l~~ 264 (281)
T 3bzb_A 191 ALPANDPT------AVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPDDPGDVCIRGQVHRWRLRW 264 (281)
T ss_dssp CCTTTCTT------CEEEEEECC--------CTHHHHHHHHSTTEEEEEEECCC------------------CEEEEEEE
T ss_pred cccCCCCC------CEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEeccccccccccccCCcchhccceEEEEEEEc
Confidence 9 8 7 5655554443321 22466777665 47 999877321 11123455678888887
Q ss_pred ecCC
Q 023457 271 KAKS 274 (282)
Q Consensus 271 ~~~~ 274 (282)
++..
T Consensus 265 ~~~~ 268 (281)
T 3bzb_A 265 RSAA 268 (281)
T ss_dssp C---
T ss_pred cccc
Confidence 6543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=126.49 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=118.4
Q ss_pred EEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCC-CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H
Q 023457 60 LVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNG-CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-P 137 (282)
Q Consensus 60 i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~-~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~ 137 (282)
+.+.|.. .++ +....+.+|+.|+. .. ++.+|||||||+|..++.++...+.+|+++|+ +
T Consensus 22 ~~i~q~~-~~~--~~~~d~~ll~~~~~----------------~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~ 82 (259)
T 3lpm_A 22 LRIIQSP-SVF--SFSIDAVLLAKFSY----------------LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQE 82 (259)
T ss_dssp EEEEEBT-TTB--CCCHHHHHHHHHCC----------------CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSH
T ss_pred EEEEeCC-CCc--cCcHHHHHHHHHhc----------------CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCH
Confidence 5555543 233 33345777777762 22 47799999999999999998665569999999 9
Q ss_pred hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC--------------------CC
Q 023457 138 HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD--------------------HL 197 (282)
Q Consensus 138 ~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~--------------------~~ 197 (282)
.+++.+++|+..|+. .+++.+...|+.+.. . .....+||+|+++.+++.. ..
T Consensus 83 ~~~~~a~~n~~~~~~-----~~~v~~~~~D~~~~~--~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~ 154 (259)
T 3lpm_A 83 RLADMAKRSVAYNQL-----EDQIEIIEYDLKKIT--D-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCT 154 (259)
T ss_dssp HHHHHHHHHHHHTTC-----TTTEEEECSCGGGGG--G-TSCTTCEEEEEECCCC-----------------------HH
T ss_pred HHHHHHHHHHHHCCC-----cccEEEEECcHHHhh--h-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCC
Confidence 999999999999874 456777776654411 0 0124689999998777654 22
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEcccCCCCCcccceEEEEEeee
Q 023457 198 FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIHADLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 198 ~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~~~~~~~~~~~~~v~~~~~~ 271 (282)
+..+++.+.++|+|| |.++++. +......+...+. .+|.+..+....+..+......+..+.|.
T Consensus 155 ~~~~l~~~~~~Lkpg------G~l~~~~----~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 155 LEDTIRVAASLLKQG------GKANFVH----RPERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKD 219 (259)
T ss_dssp HHHHHHHHHHHEEEE------EEEEEEE----CTTTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred HHHHHHHHHHHccCC------cEEEEEE----cHHHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence 467999999999998 5655542 2223455666665 47877766655555555555566666654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-14 Score=122.71 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=105.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHh---cccccccCCCcEEEEEEEeCCCCccch--h
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDA---NAGLISLRGGSVHVAPLRWGEAEANDV--A 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~---n~~~~~~~~~~v~~~~ld~~~~~~~~~--~ 177 (282)
++.+|||||||+|.+++.++...+ .+|+++|+ +.+++.+++|+.. |+. .+++.+...|+.+...... .
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----~~~v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF-----SARIEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT-----GGGEEEEECCTTCCHHHHHHTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC-----cceEEEEeCCHHHHhhhhhhhc
Confidence 467999999999999999997763 69999999 9999999999987 663 3468888777665210000 0
Q ss_pred hcCCCccEEEEcCccCCC------------------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHH
Q 023457 178 VVGREFDVILASDVVYHD------------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFK 239 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~------------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~ 239 (282)
....+||+|+++.+++.. ..++.+++.+.++|+++ |.++++.. ......++.
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~----~~~~~~~~~ 180 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG------GQLSLISR----PQSVAEIIA 180 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE------EEEEEEEC----GGGHHHHHH
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC------CEEEEEEc----HHHHHHHHH
Confidence 124689999998666543 24788999999999998 56555432 223456777
Q ss_pred HHhhcCceEEEcccCCCCCcccceEEEEEeeec
Q 023457 240 KAKKLFDVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 240 ~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
.+.+.|....+....+..+......+.++.|..
T Consensus 181 ~l~~~~~~~~i~~v~~~~~~~~~~~lv~~~k~~ 213 (260)
T 2ozv_A 181 ACGSRFGGLEITLIHPRPGEDAVRMLVTAIKGS 213 (260)
T ss_dssp HHTTTEEEEEEEEEESSTTSCCCEEEEEEEETC
T ss_pred HHHhcCCceEEEEEcCCCCCCceEEEEEEEeCC
Confidence 776667655555555544455555666666643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=116.54 Aligned_cols=145 Identities=22% Similarity=0.242 Sum_probs=101.1
Q ss_pred CCCcEEEeCCC-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSG-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcG-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+||||||| +|..++.++...+.+|+++|+ +.+++.+++|+..++. ++.+...|+.. ...+ ...+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~--~~~~--~~~~ 123 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-------NVRLVKSNGGI--IKGV--VEGT 123 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-------CCEEEECSSCS--STTT--CCSC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-------CcEEEeCCchh--hhhc--ccCc
Confidence 57899999999 999999998665789999999 9999999999998763 45666655432 1112 2468
Q ss_pred ccEEEEcCccCCCCC-------------------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-
Q 023457 183 FDVILASDVVYHDHL-------------------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK- 242 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~-------------------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~- 242 (282)
||+|+++.+++.... +..+++.+.++|+|| |.++++... +......+.+.+.
T Consensus 124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~~--~~~~~~~~~~~l~~ 195 (230)
T 3evz_A 124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG------GKVALYLPD--KEKLLNVIKERGIK 195 (230)
T ss_dssp EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE------EEEEEEEES--CHHHHHHHHHHHHH
T ss_pred eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC------eEEEEEecc--cHhHHHHHHHHHHH
Confidence 999999876654322 478899999999998 566555443 2233455666555
Q ss_pred hcCceEEEcccCCCCCcccceEEEEEeeec
Q 023457 243 KLFDVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 243 ~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
.+|.++.+.... ...-..++.+.|..
T Consensus 196 ~g~~~~~~~~~~----g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 196 LGYSVKDIKFKV----GTRWRHSLIFFKGI 221 (230)
T ss_dssp TTCEEEEEEECC----CC-CEEEEEEECCC
T ss_pred cCCceEEEEecC----CCeEEEEEEEeccc
Confidence 489888776432 22234567776654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-13 Score=110.03 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=91.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++++..++.. ..++.+...++.+. . ...+|
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~----~--~~~~~ 120 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLYEN----V--KDRKY 120 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTTTT----C--TTSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECchhcc----c--ccCCc
Confidence 4779999999999999999855 789999999 99999999999877631 11377777665541 1 14689
Q ss_pred cEEEEcCccCC-CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcC-ceEEEc
Q 023457 184 DVILASDVVYH-DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLF-DVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~-~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f-~ve~v~ 251 (282)
|+|+++.++++ ......+++.+.++|+|+ |.+++.... . .....+.+.+++.| .++.+.
T Consensus 121 D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g------G~l~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~ 181 (194)
T 1dus_A 121 NKIITNPPIRAGKEVLHRIIEEGKELLKDN------GEIWVVIQT-K--QGAKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp EEEEECCCSTTCHHHHHHHHHHHHHHEEEE------EEEEEEEES-T--HHHHHHHHHHHHHHSCCEEEE
T ss_pred eEEEECCCcccchhHHHHHHHHHHHHcCCC------CEEEEEECC-C--CChHHHHHHHHHHhcceEEEe
Confidence 99999887765 456788999999999998 555554432 2 22334555554434 555554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=116.88 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=88.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+ ++....+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-----~~~~~~~ 129 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-----ANRVTFSYADAMD-----LPFEDAS 129 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-----CCSCTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECcccc-----CCCCCCC
Confidence 357899999999999999998767889999999 9999999999887663 3467777766544 2223568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|++..++++..+...+++.+.++|+|| |.+++...
T Consensus 130 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg------G~l~i~~~ 167 (273)
T 3bus_A 130 FDAVWALESLHHMPDRGRALREMARVLRPG------GTVAIADF 167 (273)
T ss_dssp EEEEEEESCTTTSSCHHHHHHHHHTTEEEE------EEEEEEEE
T ss_pred ccEEEEechhhhCCCHHHHHHHHHHHcCCC------eEEEEEEe
Confidence 999999999999999999999999999998 56555443
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=116.60 Aligned_cols=131 Identities=13% Similarity=0.009 Sum_probs=96.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..++ ..+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+.. ....||
T Consensus 67 ~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~------~~~~fD 134 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMA-SPERFVVGLDISESALAKANETYGSSPK-----AEYFSFVKEDVFTWR------PTELFD 134 (235)
T ss_dssp CEEEEEETCTTCHHHHHHC-BTTEEEEEECSCHHHHHHHHHHHTTSGG-----GGGEEEECCCTTTCC------CSSCEE
T ss_pred CCCEEEeCCCCCHHHHHHH-hCCCeEEEEECCHHHHHHHHHHhhccCC-----CcceEEEECchhcCC------CCCCee
Confidence 4599999999999999887 45679999999 9999999998876432 346777776665521 245899
Q ss_pred EEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc-------ccHHHHHHHHh-hcCceEEEcccC
Q 023457 185 VILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW-------KKDSVFFKKAK-KLFDVETIHADL 254 (282)
Q Consensus 185 ~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~-------~~~~~f~~~~~-~~f~ve~v~~~~ 254 (282)
+|+++.++++.. ....+++.+.++|+|| |.++++....... .....+...++ .||++..+....
T Consensus 135 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPD------GELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP 208 (235)
T ss_dssp EEEEESSTTTSCGGGHHHHHHHHHHHEEEE------EEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred EEEEChhhhcCCHHHHHHHHHHHHHHCCCC------cEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence 999999999876 8899999999999998 5555443321111 12455666665 489887666443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=124.26 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=115.9
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.+...+..-.+..+.+++..+.+.+...... ...++.+|||||||+|.+++.+++. +.+|+++|+
T Consensus 196 ~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~----------~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis 264 (381)
T 3dmg_A 196 AEYTFHHLPGVFSAGKVDPASLLLLEALQERLGP----------EGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDD 264 (381)
T ss_dssp EEEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCT----------TTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESB
T ss_pred ceEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcc----------cCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECC
Confidence 4455555554333456778888888888654321 1235789999999999999999855 689999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC-----CCCHHHHHHHHHHHHhc
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH-----DHLFDPLLVTLRLFLNS 211 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~-----~~~~~~ll~~l~~ll~~ 211 (282)
+.+++.+++|+..|+. .+.+...|+.+ ......+||+|+++.++++ ......+++.+.++|+|
T Consensus 265 ~~al~~A~~n~~~~~~-------~v~~~~~D~~~-----~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lkp 332 (381)
T 3dmg_A 265 LASVLSLQKGLEANAL-------KAQALHSDVDE-----ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP 332 (381)
T ss_dssp HHHHHHHHHHHHHTTC-------CCEEEECSTTT-----TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHcCC-------CeEEEEcchhh-----ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCc
Confidence 9999999999998874 24555444433 1112468999999988876 45577899999999999
Q ss_pred CCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeeecC
Q 023457 212 GEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 212 g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~~ 273 (282)
| |.+++++. +.. .....++..- -.++.+ . ..++.||+..+...
T Consensus 333 G------G~l~iv~n--~~l-~~~~~l~~~f--~~v~~l-~-------~~gF~Vl~a~~~~~ 375 (381)
T 3dmg_A 333 G------GVFFLVSN--PFL-KYEPLLEEKF--GAFQTL-K-------VAEYKVLFAEKRGR 375 (381)
T ss_dssp E------EEEEEEEC--TTS-CHHHHHHHHH--SCCEEE-E-------ESSSEEEEEECC--
T ss_pred C------cEEEEEEc--CCC-ChHHHHHHhh--ccEEEE-e-------CCCEEEEEEEEecc
Confidence 8 55555443 222 2233332221 144544 2 24677888777654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=118.58 Aligned_cols=106 Identities=19% Similarity=0.077 Sum_probs=87.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+. +. ...
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~-----~~-~~~ 103 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGY-----VA-NEK 103 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTC-----CC-SSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECChHhC-----Cc-CCC
Confidence 357899999999999999998777789999999 9999999999987763 34677777666551 22 568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|++..++++..+...+++.+.++|+|| |.+++...
T Consensus 104 fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg------G~l~~~~~ 141 (256)
T 1nkv_A 104 CDVAACVGATWIAGGFAGAEELLAQSLKPG------GIMLIGEP 141 (256)
T ss_dssp EEEEEEESCGGGTSSSHHHHHHHTTSEEEE------EEEEEEEE
T ss_pred CCEEEECCChHhcCCHHHHHHHHHHHcCCC------eEEEEecC
Confidence 999999999999889999999999999998 56555443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=122.63 Aligned_cols=182 Identities=18% Similarity=0.134 Sum_probs=114.3
Q ss_pred ceeeecCCCCceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh
Q 023457 48 TEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL 127 (282)
Q Consensus 48 ~~~~~~~~~~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~ 127 (282)
...|.++.. .+.+...+..-....+..++..+.+++. ...+.+|||||||+|.+++.++...
T Consensus 183 ~~~~~~~~~--~~~~~~~pg~Fs~~~~d~~~~~ll~~l~----------------~~~~~~VLDlGcG~G~~s~~la~~~ 244 (375)
T 4dcm_A 183 TVSWKLEGT--DWTIHNHANVFSRTGLDIGARFFMQHLP----------------ENLEGEIVDLGCGNGVIGLTLLDKN 244 (375)
T ss_dssp CEEEEETTT--TEEEEECTTCTTCSSCCHHHHHHHHTCC----------------CSCCSEEEEETCTTCHHHHHHHHHC
T ss_pred ceEEEecCC--ceEEEeCCCcccCCcccHHHHHHHHhCc----------------ccCCCeEEEEeCcchHHHHHHHHHC
Confidence 445655543 3555554443333456666666655551 2235799999999999999999776
Q ss_pred -CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC-----CCHHH
Q 023457 128 -GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD-----HLFDP 200 (282)
Q Consensus 128 -~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~-----~~~~~ 200 (282)
+.+|+++|+ +.+++.+++|+..|+... ..++.+...|..+ .+ ...+||+|+++.++++. .....
T Consensus 245 p~~~V~gvD~s~~al~~Ar~n~~~ngl~~---~~~v~~~~~D~~~----~~--~~~~fD~Ii~nppfh~~~~~~~~~~~~ 315 (375)
T 4dcm_A 245 PQAKVVFVDESPMAVASSRLNVETNMPEA---LDRCEFMINNALS----GV--EPFRFNAVLCNPPFHQQHALTDNVAWE 315 (375)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHCGGG---GGGEEEEECSTTT----TC--CTTCEEEEEECCCC-------CCHHHH
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHcCCCc---CceEEEEechhhc----cC--CCCCeeEEEECCCcccCcccCHHHHHH
Confidence 579999999 999999999999987521 1235545444333 11 24689999999888742 22447
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeeecCC
Q 023457 201 LLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKAKS 274 (282)
Q Consensus 201 ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~~~ 274 (282)
+++.+.++|+|| |.+++++. +... ....++.. .-.++.+. ...+++||+......+
T Consensus 316 ~l~~~~~~Lkpg------G~l~iv~n--~~~~-~~~~l~~~--fg~~~~~a-------~~~~F~V~~~~~~~~~ 371 (375)
T 4dcm_A 316 MFHHARRCLKIN------GELYIVAN--RHLD-YFHKLKKI--FGNCTTIA-------TNNKFVVLKAVKLEHH 371 (375)
T ss_dssp HHHHHHHHEEEE------EEEEEEEE--TTSC-HHHHHHHH--HSCCEEEE-------ECSSEEEEEEECCC--
T ss_pred HHHHHHHhCCCC------cEEEEEEE--CCcC-HHHHHHHh--cCCEEEEe-------eCCCEEEEEEcCcccc
Confidence 899999999998 56555543 2222 22222221 12566666 3466778877665433
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-13 Score=112.35 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=97.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|..+..++... ..+|+++|+ +.+++.+++++..++. .++.+...|+.+ ++....
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-----~~~~~~ 105 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEENK-----IPLPDN 105 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTTB-----CSSCSS
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeccccc-----CCCCCC
Confidence 47799999999999999998776 369999999 9999999999987763 256666655543 222356
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec---------CcccHHHHHHHHh-hcCceEEEc
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR---------RWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~---------~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
+||+|+++.++++..+...+++.+.++|+|| |.+++...... +......+...++ .||++..+.
T Consensus 106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg------G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPF------AYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHHEEEE------EEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred CeeEEEeehhhhhcCCHHHHHHHHHHHhCCC------eEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 8999999999999999999999999999998 55544432211 1112456666665 489876654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-13 Score=112.03 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=81.4
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
.+|||||||+|..+..++...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+ ++....+||+
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-----~~~~~~~~D~ 114 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----NDRIQIVQGDVHN-----IPIEDNYADL 114 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECBTTB-----CSSCTTCEEE
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----cCceEEEEcCHHH-----CCCCcccccE
Confidence 399999999999999998664579999999 9999999999988763 3467777766544 2223578999
Q ss_pred EEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 186 ILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 186 Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+++.++++..+...+++.+.++|+||
T Consensus 115 v~~~~~l~~~~~~~~~l~~~~~~L~pg 141 (219)
T 3dlc_A 115 IVSRGSVFFWEDVATAFREIYRILKSG 141 (219)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred EEECchHhhccCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999998
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=116.82 Aligned_cols=147 Identities=12% Similarity=0.018 Sum_probs=102.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.....+|+++|+ +.+++.+++++..++ ..++.+...++.. +.....+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~~d~~~-----~~~~~~~f 147 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQD-----FTPEPDSY 147 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGG-----CCCCSSCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC------CceEEEEEcChhh-----cCCCCCCE
Confidence 57899999999999999887665679999999 999999999887653 1245555544433 22224579
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-----------cccHHHHHHHHh-hcCceEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-----------WKKDSVFFKKAK-KLFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-----------~~~~~~f~~~~~-~~f~ve~ 249 (282)
|+|++..++++... ...+++.+.++|+|| |.+++....... ......+.+.++ .||++..
T Consensus 148 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 148 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN------GIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE------EEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCCC------eEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence 99999999988766 558999999999998 555543321110 013556666665 4898887
Q ss_pred EcccCCCCCcccceEEEEE
Q 023457 250 IHADLPCNGARVGVVVYRM 268 (282)
Q Consensus 250 v~~~~~~~~~~~~~~v~~~ 268 (282)
+............+.+|.+
T Consensus 222 ~~~~~~~~~~~~~v~~~~l 240 (241)
T 2ex4_A 222 EERQENLPDEIYHVYSFAL 240 (241)
T ss_dssp EEECCSCCTTSCEEEEEEE
T ss_pred eeecCCCcchhhhhhhhee
Confidence 7654433333445666654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-13 Score=114.47 Aligned_cols=119 Identities=11% Similarity=0.101 Sum_probs=92.9
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
..|+....+.+.+. ..++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++..++
T Consensus 5 ~~~~~~~~~~~~~~----------------~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~ 67 (239)
T 1xxl_A 5 HHHHSLGLMIKTAE----------------CRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKG 67 (239)
T ss_dssp -CHHHHHHHHHHHT----------------CCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred ccCCCcchHHHHhC----------------cCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC
Confidence 35777766676662 345789999999999999999744 579999999 999999999988765
Q ss_pred cccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 152 GLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 152 ~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
. .++.+...++.. ++....+||+|+++.++++..+...+++.+.++|+|| |.+++..
T Consensus 68 ~------~~v~~~~~d~~~-----~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg------G~l~~~~ 124 (239)
T 1xxl_A 68 V------ENVRFQQGTAES-----LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD------GRFLLVD 124 (239)
T ss_dssp C------CSEEEEECBTTB-----CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred C------CCeEEEeccccc-----CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCC------cEEEEEE
Confidence 3 256666655433 2333578999999999999999999999999999998 5555543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.8e-13 Score=118.61 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=87.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+ ++...+.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~~~~~~~ 185 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----DDHVRSRVCNMLD-----TPFDKGA 185 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-----CCCCTTC
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhc-----CCCCCCC
Confidence 457899999999999999998766889999999 9999999999998774 4467777766544 2223578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|++..++++. ....+++.+.++|+|| |.++++..
T Consensus 186 fD~V~~~~~l~~~-~~~~~l~~~~~~Lkpg------G~l~~~~~ 222 (312)
T 3vc1_A 186 VTASWNNESTMYV-DLHDLFSEHSRFLKVG------GRYVTITG 222 (312)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHEEEE------EEEEEEEE
T ss_pred EeEEEECCchhhC-CHHHHHHHHHHHcCCC------cEEEEEEc
Confidence 9999999999988 4999999999999998 66665543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-13 Score=113.84 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=86.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.. ++....+
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-----~~~~~~~ 114 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-----ADRVKGITGSMDN-----LPFQNEE 114 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-----CSSCTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChhh-----CCCCCCC
Confidence 357799999999999999999777679999999 9999999999988774 4467777766644 2223578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++..++++. ....+++.+.++|+|| |.+++..
T Consensus 115 fD~v~~~~~l~~~-~~~~~l~~~~~~L~pg------G~l~~~~ 150 (257)
T 3f4k_A 115 LDLIWSEGAIYNI-GFERGMNEWSKYLKKG------GFIAVSE 150 (257)
T ss_dssp EEEEEEESCSCCC-CHHHHHHHHHTTEEEE------EEEEEEE
T ss_pred EEEEEecChHhhc-CHHHHHHHHHHHcCCC------cEEEEEE
Confidence 9999999999988 7899999999999998 5655544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.8e-13 Score=114.63 Aligned_cols=95 Identities=24% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++..+..+|+++|+ +.+++.++++.. ..++.+...|+.+ ++....+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~-----~~~~~~~ 108 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---------SPVVCYEQKAIED-----IAIEPDA 108 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------CTTEEEEECCGGG-----CCCCTTC
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------cCCeEEEEcchhh-----CCCCCCC
Confidence 358899999999999999998665459999999 999999987654 2356666655433 2333578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++..+...+++.+.++|+||
T Consensus 109 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg 138 (253)
T 3g5l_A 109 YNVVLSSLALHYIASFDDICKKVYINLKSS 138 (253)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred eEEEEEchhhhhhhhHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-13 Score=114.01 Aligned_cols=146 Identities=11% Similarity=0.027 Sum_probs=100.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++..+..+|+++|+ +.+++.+++++..+ .++.+...++.. ++.....
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~-----~~~~~~~ 158 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------PVGKFILASMET-----ATLPPNT 158 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------SEEEEEESCGGG-----CCCCSSC
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--------CceEEEEccHHH-----CCCCCCC
Confidence 357899999999999999998776678999999 99999999876542 345666554433 2223468
Q ss_pred ccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC------------cccHHHHHHHHh-hcCce
Q 023457 183 FDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR------------WKKDSVFFKKAK-KLFDV 247 (282)
Q Consensus 183 fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~------------~~~~~~f~~~~~-~~f~v 247 (282)
||+|++..++++. .....+++.+.++|+|| |.+++....... ......+...++ .||++
T Consensus 159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 232 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPN------GYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE------EEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCC------eEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEE
Confidence 9999999999987 45889999999999998 555554321100 012355566555 49988
Q ss_pred EEEcccCCCCCcccceEEEEE
Q 023457 248 ETIHADLPCNGARVGVVVYRM 268 (282)
Q Consensus 248 e~v~~~~~~~~~~~~~~v~~~ 268 (282)
..+............+.+|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (254)
T 1xtp_A 233 VKEAFQEEWPTDLFPLKMYAL 253 (254)
T ss_dssp EEEEECTTCCTTSCCEEEEEE
T ss_pred EEeeecCCCCchhheEEEEEe
Confidence 776544333323344555543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.7e-13 Score=111.97 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=82.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++..++.... ...++.+...+... ++....+|
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~-----~~~~~~~~ 102 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQK-TGGKAEFKVENASS-----LSFHDSSF 102 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSS-SSCEEEEEECCTTS-----CCSCTTCE
T ss_pred CCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccc-cCcceEEEEecccc-----cCCCCCce
Confidence 4789999999999999999855 789999999 9999999998876553210 12245555544433 22335789
Q ss_pred cEEEEcCccCCCCCHH---HHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 184 DVILASDVVYHDHLFD---PLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~---~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|+|+++.++++..+.. .+++.+.++|+|| |.+++.
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg------G~l~~~ 140 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG------AYLYLV 140 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE------EEEEEE
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC------eEEEEE
Confidence 9999999999888777 8999999999998 555554
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-13 Score=115.28 Aligned_cols=122 Identities=14% Similarity=0.100 Sum_probs=92.1
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
.++.+..+.+.+.... ...++.+|||||||+|..+..++...+.+|+++|+ +.+++.+++++..+
T Consensus 36 ~~~~~~~~~~~~~~~~------------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-- 101 (266)
T 3ujc_A 36 ISSGGLEATKKILSDI------------ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-- 101 (266)
T ss_dssp CSTTHHHHHHHHTTTC------------CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--
T ss_pred cccchHHHHHHHHHhc------------CCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--
Confidence 4555555555554333 23457899999999999999998766889999999 99999998765432
Q ss_pred ccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 153 LISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
.++.+...|+.+ ++...++||+|+++.++++. .+...+++.+.++|+|| |.+++...
T Consensus 102 ------~~~~~~~~d~~~-----~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg------G~l~~~~~ 160 (266)
T 3ujc_A 102 ------NKIIFEANDILT-----KEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT------GTLLITDY 160 (266)
T ss_dssp ------TTEEEEECCTTT-----CCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE------EEEEEEEE
T ss_pred ------CCeEEEECcccc-----CCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC------CEEEEEEe
Confidence 356776665544 22235789999999999998 88999999999999998 56555443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=109.87 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=78.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++++..++.... ...++.+...|+.. .+....+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~-----~~~~~~~ 102 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-QRKRISLFQSSLVY-----RDKRFSG 102 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-HHTTEEEEECCSSS-----CCGGGTT
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-cCcceEEEeCcccc-----cccccCC
Confidence 477999999999999999985554 69999999 9999999999876653100 01256776655532 2222468
Q ss_pred ccEEEEcCccCCCCC--HHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++... ...+++.+.++|+||
T Consensus 103 fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (219)
T 3jwg_A 103 YDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ 134 (219)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred CCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence 999999999998874 478999999999998
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-13 Score=111.48 Aligned_cols=137 Identities=6% Similarity=0.005 Sum_probs=90.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc------cCCCcEEEEEEEeCCCCccchh
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS------LRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~------~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
++.+|||+|||+|..+..++.. +.+|+++|+ +.|++.++++...+..... ....++.+...|..+ ++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-----l~ 95 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA-----LT 95 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS-----ST
T ss_pred CCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc-----CC
Confidence 4779999999999999999865 689999999 9999999886543100000 002356666666544 22
Q ss_pred hcC-CCccEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-------c-ccHHHHHHHHhhcCc
Q 023457 178 VVG-REFDVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-------W-KKDSVFFKKAKKLFD 246 (282)
Q Consensus 178 ~~~-~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-------~-~~~~~f~~~~~~~f~ 246 (282)
... ++||+|++..++++.. ....+++.+.++|+|| |.++++...... + -....+...+..+|+
T Consensus 96 ~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg------G~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~gf~ 169 (203)
T 1pjz_A 96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA------CSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWE 169 (203)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE------EEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEE
T ss_pred cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC------cEEEEEEEecCccccCCCCCCCCHHHHHHHhcCCcE
Confidence 222 5899999988877643 3556899999999998 554444432211 0 123445555545888
Q ss_pred eEEEccc
Q 023457 247 VETIHAD 253 (282)
Q Consensus 247 ve~v~~~ 253 (282)
++.+...
T Consensus 170 i~~~~~~ 176 (203)
T 1pjz_A 170 VTKVGGQ 176 (203)
T ss_dssp EEEEEES
T ss_pred EEEeccc
Confidence 8766544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=115.78 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=87.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++...+.+|+++|+ +.+++.+++++...+. ..++.+...|+.+ ++....+|
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-----~~~~~~~f 151 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLE-----IPCEDNSY 151 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTS-----CSSCTTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEEcCccc-----CCCCCCCE
Confidence 47799999999999999998776789999999 9999999999887663 3467777766544 22235689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
|+|++..++++..+...+++.+.++|+|| |.+++...
T Consensus 152 D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~ 188 (297)
T 2o57_A 152 DFIWSQDAFLHSPDKLKVFQECARVLKPR------GVMAITDP 188 (297)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEE------EEEEEEEE
T ss_pred eEEEecchhhhcCCHHHHHHHHHHHcCCC------eEEEEEEe
Confidence 99999999999999999999999999998 56555443
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-14 Score=123.29 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=79.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhccccc---------------------------
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLI--------------------------- 154 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~--------------------------- 154 (282)
.++++|||||||+|..++.++... +.+|+++|+ +.+++.+++++..+....
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 468899999999999999999775 479999999 999999999876543210
Q ss_pred -------------------------ccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC------CCHHHHHH
Q 023457 155 -------------------------SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD------HLFDPLLV 203 (282)
Q Consensus 155 -------------------------~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~------~~~~~ll~ 203 (282)
.....++.+...||..............||+|++..++.+. .....+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 00114688888777653211112235789999999988443 36788999
Q ss_pred HHHHHHhcC
Q 023457 204 TLRLFLNSG 212 (282)
Q Consensus 204 ~l~~ll~~g 212 (282)
.+.++|+||
T Consensus 205 ~~~~~LkpG 213 (292)
T 3g07_A 205 RIYRHLRPG 213 (292)
T ss_dssp HHHHHEEEE
T ss_pred HHHHHhCCC
Confidence 999999998
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-12 Score=112.23 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=84.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++...+.+|+++|+ +.+++.+++++...+. ..++.+...|+.+ + ..+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-----~---~~~ 129 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWEQ-----F---DEP 129 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGGG-----C---CCC
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCCeEEEECChhh-----C---CCC
Confidence 357899999999999999998677889999999 9999999999887653 3466666655432 2 268
Q ss_pred ccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|++..++++. .....+++.+.++|+|| |.+++...
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~ 169 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD------GVMLLHTI 169 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT------CEEEEEEE
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCC------CEEEEEEe
Confidence 9999999999987 68899999999999998 66665444
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-12 Score=113.89 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=85.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+ + .++
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~---~~~ 137 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGWEE-----F---DEP 137 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----SSCEEEEECCGGG-----C---CCC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECCHHH-----c---CCC
Confidence 457899999999999999999776799999999 9999999999988764 4467777765543 2 578
Q ss_pred ccEEEEcCccCCCC---------CHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDH---------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~---------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|++..++++.. ....+++.+.++|+|| |.+++...
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg------G~l~i~~~ 184 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD------GRMLLHTI 184 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT------CEEEEEEE
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC------cEEEEEEE
Confidence 99999999998873 3489999999999998 66666544
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=114.28 Aligned_cols=103 Identities=21% Similarity=0.296 Sum_probs=84.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~f 183 (282)
+.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++..++. ..++.+...++.+ ++ ....+|
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~~~~~~~~f 137 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGV-----SDNMQFIHCAAQD-----VASHLETPV 137 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CC-----GGGEEEEESCGGG-----TGGGCSSCE
T ss_pred CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEEcCHHH-----hhhhcCCCc
Confidence 679999999999999999855 789999999 9999999999987663 2467777766544 22 235789
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|++..++++..+...+++.+.++|+|| |.+++..
T Consensus 138 D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg------G~l~~~~ 173 (285)
T 4htf_A 138 DLILFHAVLEWVADPRSVLQTLWSVLRPG------GVLSLMF 173 (285)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHTEEEE------EEEEEEE
T ss_pred eEEEECchhhcccCHHHHHHHHHHHcCCC------eEEEEEE
Confidence 99999999999999999999999999998 5555544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-13 Score=110.66 Aligned_cols=102 Identities=14% Similarity=0.012 Sum_probs=78.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++++..++.... ...++.+...|+.. ......+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~-----~~~~~~~ 102 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-QWERLQLIQGALTY-----QDKRFHG 102 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-HHTTEEEEECCTTS-----CCGGGCS
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-cCcceEEEeCCccc-----ccccCCC
Confidence 467999999999999999986554 69999999 9999999999876653100 01256666655432 2222468
Q ss_pred ccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++.. ....+++.+.++|+||
T Consensus 103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (217)
T 3jwh_A 103 YDAATVIEVIEHLDLSRLGAFERVLFEFAQPK 134 (217)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred cCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999876 4489999999999998
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-13 Score=115.35 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=87.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+ ++...++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~~~~~~~ 114 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----QNRVTGIVGSMDD-----LPFRNEE 114 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-----CCCCTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcCcEEEEcChhh-----CCCCCCC
Confidence 457899999999999999998664569999999 9999999999988764 4568888777654 2223568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|+++.++++. ....+++.+.++|+|| |.+++...
T Consensus 115 fD~i~~~~~~~~~-~~~~~l~~~~~~Lkpg------G~l~~~~~ 151 (267)
T 3kkz_A 115 LDLIWSEGAIYNI-GFERGLNEWRKYLKKG------GYLAVSEC 151 (267)
T ss_dssp EEEEEESSCGGGT-CHHHHHHHHGGGEEEE------EEEEEEEE
T ss_pred EEEEEEcCCceec-CHHHHHHHHHHHcCCC------CEEEEEEe
Confidence 9999999999988 7899999999999998 56555443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=112.07 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=83.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. ..+|+++|+ +.+++.+++++..++. .++.+...|... ++..+.+|
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~-----l~~~~~~f 104 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAEQ-----MPFTDERF 104 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-C-----CCSCTTCE
T ss_pred CCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecHHh-----CCCCCCCE
Confidence 4779999999999999998754 469999999 9999999999887653 246666655433 23335789
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++++..+...+++.+.++|+|| |.+++..
T Consensus 105 D~V~~~~~l~~~~d~~~~l~~~~r~Lkpg------G~l~~~~ 140 (260)
T 1vl5_A 105 HIVTCRIAAHHFPNPASFVSEAYRVLKKG------GQLLLVD 140 (260)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred EEEEEhhhhHhcCCHHHHHHHHHHHcCCC------CEEEEEE
Confidence 99999999999999999999999999998 5655543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=106.45 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=93.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++..++. .++.+...|+.+ ++. ..+|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-----~~~-~~~~ 98 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLNN-----LTF-DRQY 98 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGGG-----CCC-CCCE
T ss_pred CCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchhh-----CCC-CCCc
Confidence 4679999999999999999855 689999999 9999999999887653 246666655443 222 5689
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC----------cccHHHHHHHHhhcCceEEEc
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR----------WKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~----------~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|+|+++.++++.. ....+++.+.++|+|| |.++++...... .-....+.+.+.. |++....
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~g------G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-f~~~~~~ 171 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKPG------GYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG-WERVKYN 171 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEEE------EEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT-SEEEEEE
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCCC------eEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC-CeEEEec
Confidence 9999999998765 7899999999999998 555554432211 1123444455544 8776654
Q ss_pred c
Q 023457 252 A 252 (282)
Q Consensus 252 ~ 252 (282)
.
T Consensus 172 ~ 172 (199)
T 2xvm_A 172 E 172 (199)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=108.69 Aligned_cols=127 Identities=19% Similarity=0.133 Sum_probs=92.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++.. ++.+...++. .++...++||
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~-----~~~~~~~~fD 104 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTHP-----------SVTFHHGTIT-----DLSDSPKRWA 104 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHCT-----------TSEEECCCGG-----GGGGSCCCEE
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC-----------CCeEEeCccc-----ccccCCCCeE
Confidence 679999999999999999855 679999999 999999887621 3444443332 3333457899
Q ss_pred EEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC------------cccHHHHHHHHh-hcCceEE
Q 023457 185 VILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR------------WKKDSVFFKKAK-KLFDVET 249 (282)
Q Consensus 185 ~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~------------~~~~~~f~~~~~-~~f~ve~ 249 (282)
+|++..++++.. ....+++.+.++|+|| |.+++....... +.....+...++ .||++..
T Consensus 105 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg------G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 178 (203)
T 3h2b_A 105 GLLAWYSLIHMGPGELPDALVALRMAVEDG------GGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTS 178 (203)
T ss_dssp EEEEESSSTTCCTTTHHHHHHHHHHTEEEE------EEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEE
T ss_pred EEEehhhHhcCCHHHHHHHHHHHHHHcCCC------cEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEE
Confidence 999999999875 8999999999999998 555554432211 122456666665 4898887
Q ss_pred EcccCC
Q 023457 250 IHADLP 255 (282)
Q Consensus 250 v~~~~~ 255 (282)
+.....
T Consensus 179 ~~~~~~ 184 (203)
T 3h2b_A 179 SHWDPR 184 (203)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 765544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=108.89 Aligned_cols=124 Identities=17% Similarity=0.204 Sum_probs=90.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++.. .+...++.. ++ ...+|
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~d~~~-----~~-~~~~f 103 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLGR------------PVRTMLFHQ-----LD-AIDAY 103 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTS------------CCEECCGGG-----CC-CCSCE
T ss_pred CCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhcCC------------ceEEeeecc-----CC-CCCcE
Confidence 4779999999999999999854 689999999 9999999887621 122223222 22 35789
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-----------cccHHHHHHHHh-hc-CceE
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-----------WKKDSVFFKKAK-KL-FDVE 248 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-----------~~~~~~f~~~~~-~~-f~ve 248 (282)
|+|+++.++++.. ....+++.+.++|+|| |.+++....... +.....+...++ .| |++.
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~ 177 (211)
T 3e23_A 104 DAVWAHACLLHVPRDELADVLKLIWRALKPG------GLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASV 177 (211)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHHEEEE------EEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred EEEEecCchhhcCHHHHHHHHHHHHHhcCCC------cEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEE
Confidence 9999999999877 7889999999999998 555554432111 113556666665 48 9887
Q ss_pred EEccc
Q 023457 249 TIHAD 253 (282)
Q Consensus 249 ~v~~~ 253 (282)
.+...
T Consensus 178 ~~~~~ 182 (211)
T 3e23_A 178 AVESS 182 (211)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=106.09 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=103.6
Q ss_pred EEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhH
Q 023457 61 VIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHV 139 (282)
Q Consensus 61 ~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~ 139 (282)
.+...+...++...++.+..+.+++.... .++.+|||||||+|..++.++.....+|+++|+ +.+
T Consensus 30 ~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--------------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~ 95 (205)
T 3grz_A 30 IIRLDPGLAFGTGNHQTTQLAMLGIERAM--------------VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDES 95 (205)
T ss_dssp EEEESCC-----CCHHHHHHHHHHHHHHC--------------SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHH
T ss_pred eEEecCCcccCCCCCccHHHHHHHHHHhc--------------cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHH
Confidence 33333444444456788888888886543 237799999999999999988654469999999 999
Q ss_pred HHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCc
Q 023457 140 LTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKK 219 (282)
Q Consensus 140 l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g 219 (282)
++.+++|+..++. . ++.+...|+.+ ....+||+|+++.++. .+..+++.+.++|+++ |
T Consensus 96 ~~~a~~~~~~~~~-----~-~v~~~~~d~~~-------~~~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~g------G 153 (205)
T 3grz_A 96 MTAAEENAALNGI-----Y-DIALQKTSLLA-------DVDGKFDLIVANILAE---ILLDLIPQLDSHLNED------G 153 (205)
T ss_dssp HHHHHHHHHHTTC-----C-CCEEEESSTTT-------TCCSCEEEEEEESCHH---HHHHHGGGSGGGEEEE------E
T ss_pred HHHHHHHHHHcCC-----C-ceEEEeccccc-------cCCCCceEEEECCcHH---HHHHHHHHHHHhcCCC------C
Confidence 9999999998764 2 26666655543 1246899999987663 3578889999999998 4
Q ss_pred eEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 220 KMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 220 ~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
.+ ++...... ....+...++ .+|++..+.
T Consensus 154 ~l-~~~~~~~~--~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 154 QV-IFSGIDYL--QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp EE-EEEEEEGG--GHHHHHHHHHHTTEEEEEEE
T ss_pred EE-EEEecCcc--cHHHHHHHHHHcCCceEEee
Confidence 54 44332222 3445555554 478877655
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=107.02 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=77.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~ 181 (282)
.++.+|||||||+|..++.++.....+|+++|+ +.+++.+++|+..++. .++.+...|+.+ .... ...
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~----~~~~~~~~ 112 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------SGATLRRGAVAA----VVAAGTTS 112 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEEESCHHH----HHHHCCSS
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEEccHHH----HHhhccCC
Confidence 357899999999999999887655568999999 9999999999998763 356666655433 1111 157
Q ss_pred CccEEEEcCccCCC-CCHHHHHHHHHH--HHhcC
Q 023457 182 EFDVILASDVVYHD-HLFDPLLVTLRL--FLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~-~~~~~ll~~l~~--ll~~g 212 (282)
+||+|+++.++++. .....++..+.+ +|+||
T Consensus 113 ~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pg 146 (189)
T 3p9n_A 113 PVDLVLADPPYNVDSADVDAILAALGTNGWTREG 146 (189)
T ss_dssp CCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTT
T ss_pred CccEEEECCCCCcchhhHHHHHHHHHhcCccCCC
Confidence 89999998775543 678899999999 99998
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-12 Score=104.52 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~ 182 (282)
++.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|+..++. .++.+...+. ..+. ....+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~~~-----~~l~~~~~~~ 89 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI------ENTELILDGH-----ENLDHYVREP 89 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEESCG-----GGGGGTCCSC
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCcH-----HHHHhhccCC
Confidence 5789999999999999999855 789999999 9999999999988763 3555554222 2221 22568
Q ss_pred ccEEEEcCccCC---------CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYH---------DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~---------~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|+++..... ......+++.+.++|+|| |.++++..
T Consensus 90 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~l~i~~~ 136 (185)
T 3mti_A 90 IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG------GRLAIMIY 136 (185)
T ss_dssp EEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE------EEEEEEEC
T ss_pred cCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC------cEEEEEEe
Confidence 999988632211 133457789999999998 56555543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=105.30 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=88.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++... .+|+++|+ +.+++.++++. .++.+...+ .+...+.|
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d--------~~~~~~~~ 76 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEKF-----------DSVITLSDP--------KEIPDNSV 76 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHHC-----------TTSEEESSG--------GGSCTTCE
T ss_pred CCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC--------CCCCCCce
Confidence 47799999999999999998655 49999999 99999998871 133333322 22235689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc---------ccHHHHHHHHhhcCceEEEcc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW---------KKDSVFFKKAKKLFDVETIHA 252 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~---------~~~~~f~~~~~~~f~ve~v~~ 252 (282)
|+|+++.++++..+...+++.+.++|+|| |.+++........ -....+...++ ||++..+..
T Consensus 77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pg------G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~ 147 (170)
T 3i9f_A 77 DFILFANSFHDMDDKQHVISEVKRILKDD------GRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFN 147 (170)
T ss_dssp EEEEEESCSTTCSCHHHHHHHHHHHEEEE------EEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEEC
T ss_pred EEEEEccchhcccCHHHHHHHHHHhcCCC------CEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccC
Confidence 99999999999999999999999999998 5555443221110 12456666667 888776654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-13 Score=120.90 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=81.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++|++|||||||||++++.+|++++.+|+++|...++..+++++..|+. .+++.+...+..+ +. .+.+
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~-----~~~i~~i~~~~~~-----~~-lpe~ 149 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGL-----EDRVHVLPGPVET-----VE-LPEQ 149 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----TTTEEEEESCTTT-----CC-CSSC
T ss_pred hcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCC-----CceEEEEeeeeee-----ec-CCcc
Confidence 35699999999999999999997777899999995588999999999985 5678887755443 21 2468
Q ss_pred ccEEEE---cCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILA---SDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~---sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+||+ ...+.+...++.++....++|+|+
T Consensus 150 ~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~ 182 (376)
T 4hc4_A 150 VDAIVSEWMGYGLLHESMLSSVLHARTKWLKEG 182 (376)
T ss_dssp EEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred ccEEEeecccccccccchhhhHHHHHHhhCCCC
Confidence 999998 455667778999999999999998
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-12 Score=111.34 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=81.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.++.. +.+|+++|+ +.+++.+++++..++. ++.+...|... ... ..+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~~-----~~~-~~~f 185 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL-------NISTALYDINA-----ANI-QENY 185 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-------CEEEEECCGGG-----CCC-CSCE
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEecccc-----ccc-cCCc
Confidence 4789999999999999999855 679999999 9999999999988652 56666655443 111 5789
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
|+|+++.++++. +....+++.+.++|+|| |.++++..
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~l~i~~~ 224 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVG------GYNLIVAA 224 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEEE------EEEEEEEE
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCCC------cEEEEEEe
Confidence 999999999865 55779999999999998 56555544
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-12 Score=109.18 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=103.1
Q ss_pred EEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-Hh
Q 023457 60 LVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PH 138 (282)
Q Consensus 60 i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~ 138 (282)
+.+...+...+|...++.+....+++.... .++.+|||+|||+|.+++.+++. +.+|+++|+ +.
T Consensus 89 ~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~--------------~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~ 153 (254)
T 2nxc_A 89 IPLVIEPGMAFGTGHHETTRLALKALARHL--------------RPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPM 153 (254)
T ss_dssp EEEECCCC-----CCSHHHHHHHHHHHHHC--------------CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGG
T ss_pred eEEEECCCccccCCCCHHHHHHHHHHHHhc--------------CCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHH
Confidence 444445555566667888888888886642 23779999999999999998854 559999999 99
Q ss_pred HHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCC
Q 023457 139 VLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKK 218 (282)
Q Consensus 139 ~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~ 218 (282)
+++.+++|+..|+. . +.+...++.+ .+ ...+||+|+++.+. .....++..+.++|+||
T Consensus 154 ~v~~a~~n~~~~~~-----~--v~~~~~d~~~----~~--~~~~fD~Vv~n~~~---~~~~~~l~~~~~~Lkpg------ 211 (254)
T 2nxc_A 154 VLPQAEANAKRNGV-----R--PRFLEGSLEA----AL--PFGPFDLLVANLYA---ELHAALAPRYREALVPG------ 211 (254)
T ss_dssp GHHHHHHHHHHTTC-----C--CEEEESCHHH----HG--GGCCEEEEEEECCH---HHHHHHHHHHHHHEEEE------
T ss_pred HHHHHHHHHHHcCC-----c--EEEEECChhh----cC--cCCCCCEEEECCcH---HHHHHHHHHHHHHcCCC------
Confidence 99999999998874 1 4444433322 11 24689999997543 23678899999999998
Q ss_pred ceEEEEEEeecCcccHHHHHHHHh-hcCceEEEcc
Q 023457 219 KKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIHA 252 (282)
Q Consensus 219 g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~ 252 (282)
|. +++...... ....+...++ .||.+..+..
T Consensus 212 G~-lils~~~~~--~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 212 GR-ALLTGILKD--RAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp EE-EEEEEEEGG--GHHHHHHHHHHTTCEEEEEEE
T ss_pred CE-EEEEeeccC--CHHHHHHHHHHCCCEEEEEec
Confidence 44 444433222 3455555554 4898876653
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8e-12 Score=108.25 Aligned_cols=155 Identities=10% Similarity=-0.008 Sum_probs=98.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh----------ccccc-ccCCCcEEEEEEEeCCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA----------NAGLI-SLRGGSVHVAPLRWGEAE 172 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~----------n~~~~-~~~~~~v~~~~ld~~~~~ 172 (282)
++.+|||+|||+|..+..+|. .+.+|+++|+ +.+++.++++... ++... .....++.+...|..+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~-~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~-- 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFAD-RGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD-- 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT--
T ss_pred CCCeEEEeCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc--
Confidence 477999999999999999985 4689999999 9999998765421 00000 0012356666644433
Q ss_pred ccchhhc-CCCccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-------c-ccHHHHHHHH
Q 023457 173 ANDVAVV-GREFDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-------W-KKDSVFFKKA 241 (282)
Q Consensus 173 ~~~~~~~-~~~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-------~-~~~~~f~~~~ 241 (282)
++.. .++||+|++..++++. .....+++.+.++|+|| |.++++...... + -....+...+
T Consensus 145 ---l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG------G~l~l~~~~~~~~~~~g~~~~~~~~el~~~l 215 (252)
T 2gb4_A 145 ---LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE------FQYLVAVLSYDPTKHAGPPFYVPSAELKRLF 215 (252)
T ss_dssp ---GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE------EEEEEEEEECCTTSCCCSSCCCCHHHHHHHH
T ss_pred ---CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC------eEEEEEEEecCCccCCCCCCCCCHHHHHHHh
Confidence 3322 2689999998777654 34678999999999998 665444322110 1 1245566666
Q ss_pred hhcCceEEEcccCCC-------CCcccceEEEEEeee
Q 023457 242 KKLFDVETIHADLPC-------NGARVGVVVYRMTGK 271 (282)
Q Consensus 242 ~~~f~ve~v~~~~~~-------~~~~~~~~v~~~~~~ 271 (282)
..+|++..+...... ......-.+|+++|+
T Consensus 216 ~~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (252)
T 2gb4_A 216 GTKCSMQCLEEVDALEERHKAWGLDYLFEKLYLLTEK 252 (252)
T ss_dssp TTTEEEEEEEEEECCCGGGTTTTCSCCEEEEEEEEEC
T ss_pred hCCeEEEEEeccccchhhhhhcCcchhhheeEEEecC
Confidence 667888765532221 111223478888764
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.6e-12 Score=103.82 Aligned_cols=126 Identities=15% Similarity=0.089 Sum_probs=89.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+ +|||||||+|..+..++. .+.+|+++|+ +.+++.++++...++. ++.+...|... .+.....||
T Consensus 31 ~-~vLdiGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~~-----~~~~~~~fD 96 (202)
T 2kw5_A 31 G-KILCLAEGEGRNACFLAS-LGYEVTAVDQSSVGLAKAKQLAQEKGV-------KITTVQSNLAD-----FDIVADAWE 96 (202)
T ss_dssp S-EEEECCCSCTHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHHTC-------CEEEECCBTTT-----BSCCTTTCS
T ss_pred C-CEEEECCCCCHhHHHHHh-CCCeEEEEECCHHHHHHHHHHHHhcCC-------ceEEEEcChhh-----cCCCcCCcc
Confidence 5 999999999999999875 4679999999 9999999998876542 45555544433 222346899
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-------------cccHHHHHHHHhhcCceEEEc
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-------------WKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-------------~~~~~~f~~~~~~~f~ve~v~ 251 (282)
+|+++.+.+.......+++.+.++|+|| |.+++....... +.....+...++ ||++..+.
T Consensus 97 ~v~~~~~~~~~~~~~~~l~~~~~~L~pg------G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~ 169 (202)
T 2kw5_A 97 GIVSIFCHLPSSLRQQLYPKVYQGLKPG------GVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIAN 169 (202)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTCCSS------EEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEE
T ss_pred EEEEEhhcCCHHHHHHHHHHHHHhcCCC------cEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEE
Confidence 9999754444456788999999999998 555554432111 122456666666 99887655
Q ss_pred c
Q 023457 252 A 252 (282)
Q Consensus 252 ~ 252 (282)
.
T Consensus 170 ~ 170 (202)
T 2kw5_A 170 N 170 (202)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.1e-12 Score=104.45 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=89.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..++.++... ..+|+++|+ +.+++.+++|+..++. .++.+...++.+ .+. ...
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~----~~~-~~~ 107 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------RNVTLVEAFAPE----GLD-DLP 107 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEEEECCTTT----TCT-TSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEeCChhh----hhh-cCC
Confidence 347899999999999999998665 379999999 9999999999988763 356666655433 111 125
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVET 249 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~ 249 (282)
.||+|++..+++ ....+++.+.++|+|| |.+++.... ......+...++ .+|.++.
T Consensus 108 ~~D~i~~~~~~~---~~~~~l~~~~~~Lkpg------G~l~~~~~~---~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 108 DPDRVFIGGSGG---MLEEIIDAVDRRLKSE------GVIVLNAVT---LDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp CCSEEEESCCTT---CHHHHHHHHHHHCCTT------CEEEEEECB---HHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEECCCCc---CHHHHHHHHHHhcCCC------eEEEEEecc---cccHHHHHHHHHHCCCceeE
Confidence 799999987774 7889999999999998 565554332 223445555544 4775543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-12 Score=106.13 Aligned_cols=112 Identities=20% Similarity=0.178 Sum_probs=85.0
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
.|.....+..++.... ...++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++..+
T Consensus 32 ~~~~~~~~~~~l~~~~------------~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~-- 96 (216)
T 3ofk_A 32 NPFERERHTQLLRLSL------------SSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW-- 96 (216)
T ss_dssp CHHHHHHHHHHHHHHT------------TTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC--
T ss_pred CHhHHHHHHHHHHHHc------------ccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC--
Confidence 4444445555665433 2245789999999999999999754 579999999 99999999887642
Q ss_pred ccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCH---HHHHHHHHHHHhcC
Q 023457 153 LISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLF---DPLLVTLRLFLNSG 212 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~---~~ll~~l~~ll~~g 212 (282)
.++.+...|+.+. . ...+||+|+++.++++.... ..+++.+.++|+||
T Consensus 97 ------~~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 147 (216)
T 3ofk_A 97 ------SHISWAATDILQF-----S-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPG 147 (216)
T ss_dssp ------SSEEEEECCTTTC-----C-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEE
T ss_pred ------CCeEEEEcchhhC-----C-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCC
Confidence 2567777665552 1 25789999999999988776 46699999999998
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=107.95 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=89.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~ 182 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++ . .+.+...++.+. ...+ ....+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~--~----------~~~~~~~~~~~~--~~~~~~~~~~ 116 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA--G----------AGEVHLASYAQL--AEAKVPVGKD 116 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT--C----------SSCEEECCHHHH--HTTCSCCCCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh--c----------ccccchhhHHhh--cccccccCCC
Confidence 3679999999999999999854 789999999 9999999876 1 122333332220 0001 11345
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee----------------------------cCcccH
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL----------------------------RRWKKD 234 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~----------------------------~~~~~~ 234 (282)
||+|+++.+++ ..+...+++.+.++|+|| |.+++..... ..+...
T Consensus 117 fD~v~~~~~l~-~~~~~~~l~~~~~~L~pg------G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3e8s_A 117 YDLICANFALL-HQDIIELLSAMRTLLVPG------GALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTL 189 (227)
T ss_dssp EEEEEEESCCC-SSCCHHHHHHHHHTEEEE------EEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCH
T ss_pred ccEEEECchhh-hhhHHHHHHHHHHHhCCC------eEEEEEecCccccCccccccccchhhhhccccCcccceEEEecH
Confidence 99999999999 788999999999999998 5555443210 011135
Q ss_pred HHHHHHHh-hcCceEEEcccC
Q 023457 235 SVFFKKAK-KLFDVETIHADL 254 (282)
Q Consensus 235 ~~f~~~~~-~~f~ve~v~~~~ 254 (282)
..+...++ .||.+..+....
T Consensus 190 ~~~~~~l~~aGf~~~~~~~~~ 210 (227)
T 3e8s_A 190 ASWLNALDMAGLRLVSLQEPQ 210 (227)
T ss_dssp HHHHHHHHHTTEEEEEEECCC
T ss_pred HHHHHHHHHcCCeEEEEecCC
Confidence 66777665 499998877643
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-12 Score=104.00 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=89.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++.. ++.+...++.. ++.....|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~-----------~~~~~~~d~~~-----~~~~~~~~ 108 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP-----------EARWVVGDLSV-----DQISETDF 108 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTT-----SCCCCCCE
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC-----------CCcEEEccccc-----CCCCCCce
Confidence 4779999999999999999855 689999999 999999987642 24445444433 12224689
Q ss_pred cEEEEc-CccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEccc
Q 023457 184 DVILAS-DVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIHAD 253 (282)
Q Consensus 184 D~Ii~s-d~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~~ 253 (282)
|+|+++ +++++. +....+++.+.++|+|+ |.+++.... ........+...++ .||.+..+...
T Consensus 109 D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------G~l~~~~~~-~~~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 109 DLIVSAGNVMGFLAEDGREPALANIHRALGAD------GRAVIGFGA-GRGWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHEEEE------EEEEEEEET-TSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred eEEEECCcHHhhcChHHHHHHHHHHHHHhCCC------CEEEEEeCC-CCCcCHHHHHHHHHHcCCEEeeeecc
Confidence 999998 677655 45688999999999998 555544433 33234556666555 48988877544
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=105.09 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=102.4
Q ss_pred CccceeehhHH-HHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHH
Q 023457 69 GLSFKLWPAAT-TLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 69 g~g~~~W~~a~-~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~ 144 (282)
|..++.|+--. -||..|..-.... ...+|.+|||||||+|..+..+|...+ .+|+++|+ +.|++.++
T Consensus 49 ~~e~r~w~p~rsklaa~i~~gl~~l---------~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~ 119 (233)
T 4df3_A 49 GEEYREWNAYRSKLAAALLKGLIEL---------PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL 119 (233)
T ss_dssp TEEEEECCTTTCHHHHHHHTTCSCC---------CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH
T ss_pred CceeeeECCCchHHHHHHHhchhhc---------CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 55678998432 4455554433222 456799999999999999999997765 69999999 99999998
Q ss_pred HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 145 FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+++... .++.....+-.. +.........+|+|++ + +.+..+...++..+.+.|+|| |.+++.
T Consensus 120 ~~a~~~--------~ni~~V~~d~~~--p~~~~~~~~~vDvVf~-d-~~~~~~~~~~l~~~~r~LKpG------G~lvI~ 181 (233)
T 4df3_A 120 TVVRDR--------RNIFPILGDARF--PEKYRHLVEGVDGLYA-D-VAQPEQAAIVVRNARFFLRDG------GYMLMA 181 (233)
T ss_dssp HHSTTC--------TTEEEEESCTTC--GGGGTTTCCCEEEEEE-C-CCCTTHHHHHHHHHHHHEEEE------EEEEEE
T ss_pred HhhHhh--------cCeeEEEEeccC--ccccccccceEEEEEE-e-ccCChhHHHHHHHHHHhccCC------CEEEEE
Confidence 876542 244444433333 3333444578999986 3 445566788999999999998 565553
Q ss_pred EEeecCcc----c---HHHHHHHH-hhcCceEEEcccCC
Q 023457 225 MAHLRRWK----K---DSVFFKKA-KKLFDVETIHADLP 255 (282)
Q Consensus 225 ~~~~~~~~----~---~~~f~~~~-~~~f~ve~v~~~~~ 255 (282)
. ..+... . ...-.+.+ +.||++.....-.+
T Consensus 182 i-k~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 182 I-KARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp E-ECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred E-ecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 3 222211 1 22223333 35898865543333
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-12 Score=110.21 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=77.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
+|.+|||||||+|..++.+++.. +.+|+++|+ +.|++.+++++...+. ..++.+...|..+ ++ .
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----~~~v~~~~~D~~~-----~~--~ 137 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRD-----IA--I 137 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCTTT-----CC--C
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----CceEEEeeccccc-----cc--c
Confidence 48899999999999999998654 359999999 9999999999887553 4467776654433 22 3
Q ss_pred CCccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
+.||+|+++.++++.. ....+++.+.++|+||
T Consensus 138 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG 171 (261)
T 4gek_A 138 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG 171 (261)
T ss_dssp CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cccccceeeeeeeecCchhHhHHHHHHHHHcCCC
Confidence 5799999999998754 3457899999999998
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-12 Score=105.30 Aligned_cols=122 Identities=12% Similarity=0.085 Sum_probs=88.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.+++. +.+|+++|+ +.+++.+++|+..++. .+++.+...|..+ .+. ....|
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~----~~~-~~~~~ 123 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGL-----SPRMRAVQGTAPA----ALA-DLPLP 123 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCTTG----GGT-TSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC-----CCCEEEEeCchhh----hcc-cCCCC
Confidence 4789999999999999999866 889999999 9999999999998774 3356666544332 121 13579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
|+|++...+ ..+ +++.+.++|+|| |.+++.... ......+.+.++ .+|++..+.
T Consensus 124 D~v~~~~~~----~~~-~l~~~~~~Lkpg------G~lv~~~~~---~~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 124 EAVFIGGGG----SQA-LYDRLWEWLAPG------TRIVANAVT---LESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp SEEEECSCC----CHH-HHHHHHHHSCTT------CEEEEEECS---HHHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEECCcc----cHH-HHHHHHHhcCCC------cEEEEEecC---cccHHHHHHHHHhCCCcEEEEE
Confidence 999987644 456 999999999998 565554432 233455555454 367776654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=113.14 Aligned_cols=143 Identities=15% Similarity=0.070 Sum_probs=93.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc------------cC-----------CC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS------------LR-----------GG 159 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~------------~~-----------~~ 159 (282)
.++.+|||||||+|..++.++.....+|+++|+ +.+++.+++++..+..... .. ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 457899999999999999887443349999999 9999999988765321000 00 01
Q ss_pred cE-EEEEEEeCCCCccchhhcCCCccEEEEcCccC----CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee------
Q 023457 160 SV-HVAPLRWGEAEANDVAVVGREFDVILASDVVY----HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL------ 228 (282)
Q Consensus 160 ~v-~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly----~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~------ 228 (282)
++ .+...|..+.... ......+||+|+++.+++ +......+++.+.++|+|| |.+++.....
T Consensus 135 ~v~~~~~~d~~~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg------G~li~~~~~~~~~~~~ 207 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPL-GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG------GFLVMVDALKSSYYMI 207 (265)
T ss_dssp HEEEEEECCTTSSSTT-TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE------EEEEEEEESSCCEEEE
T ss_pred hheeEEEeeeccCCCC-CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCC------cEEEEEecCCCceEEc
Confidence 25 6666555542110 011126899999999998 6667889999999999998 5555543211
Q ss_pred ------cCcccHHHHHHHHh-hcCceEEEccc
Q 023457 229 ------RRWKKDSVFFKKAK-KLFDVETIHAD 253 (282)
Q Consensus 229 ------~~~~~~~~f~~~~~-~~f~ve~v~~~ 253 (282)
...-....+...++ .||.+..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 239 (265)
T 2i62_A 208 GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVI 239 (265)
T ss_dssp TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCccccccccCHHHHHHHHHHCCCEEEEEEEe
Confidence 11112345556555 58988766543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-12 Score=110.54 Aligned_cols=98 Identities=23% Similarity=0.245 Sum_probs=81.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..+..++... +.+|+++|+ +.+++.+++++..++. .++.+...|... ++....
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-----~~~~~~ 104 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI------KNVKFLQANIFS-----LPFEDS 104 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGG-----CCSCTT
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEccccc-----CCCCCC
Confidence 458899999999999999998765 479999999 9999999999987763 246666544433 223357
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|+++.++++..+...+++.+.++|+||
T Consensus 105 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 135 (276)
T 3mgg_A 105 SFDHIFVCFVLEHLQSPEEALKSLKKVLKPG 135 (276)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred CeeEEEEechhhhcCCHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999998
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-12 Score=114.76 Aligned_cols=107 Identities=19% Similarity=0.152 Sum_probs=83.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhccccc-c-cCCCcEEEEEEEeCCCCccch--
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLI-S-LRGGSVHVAPLRWGEAEANDV-- 176 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~-~-~~~~~v~~~~ld~~~~~~~~~-- 176 (282)
.++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++|+..+.... . ....++.+...|+.+. ...
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l--~~~~~ 159 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENL--ATAEP 159 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCG--GGCBS
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHh--hhccc
Confidence 468899999999999999998765 369999999 999999999987652100 0 0124677777665541 111
Q ss_pred -hhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 177 -AVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 177 -~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+....+||+|+++.++++..+...+++.+.++|+||
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg 196 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG 196 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCC
Confidence 233568999999999999999999999999999998
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=113.60 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=75.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..++ ..+.+|+++|+ +.|++.+++ ..++.+...+.. +++..+++||
T Consensus 40 ~~~vLDvGcGtG~~~~~l~-~~~~~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e-----~~~~~~~sfD 101 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLA-EFFERVHAVDPGEAQIRQALR------------HPRVTYAVAPAE-----DTGLPPASVD 101 (257)
T ss_dssp SSEEEEESCTTTTTHHHHH-TTCSEEEEEESCHHHHHTCCC------------CTTEEEEECCTT-----CCCCCSSCEE
T ss_pred CCCEEEEcCCCCHHHHHHH-HhCCEEEEEeCcHHhhhhhhh------------cCCceeehhhhh-----hhcccCCccc
Confidence 5689999999999999997 45689999999 888876642 235666554433 3444467999
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
+|+++.++++. +.+.+++.+.++|+|| |.++++...
T Consensus 102 ~v~~~~~~h~~-~~~~~~~e~~rvLkpg------G~l~~~~~~ 137 (257)
T 4hg2_A 102 VAIAAQAMHWF-DLDRFWAELRRVARPG------AVFAAVTYG 137 (257)
T ss_dssp EEEECSCCTTC-CHHHHHHHHHHHEEEE------EEEEEEEEC
T ss_pred EEEEeeehhHh-hHHHHHHHHHHHcCCC------CEEEEEECC
Confidence 99999999776 5889999999999998 676666554
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-12 Score=111.66 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
++.+|||||||+|..+..++... +.+|+++|+ +.+++.+++++..+ + ...++.+...++.+. +...
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~v~~~~~d~~~~-----~~~~ 105 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD-----TYKNVSFKISSSDDF-----KFLG 105 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC------CCTTEEEEECCTTCC-----GGGC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC-----CCCceEEEEcCHHhC-----Cccc
Confidence 47899999999999999998643 589999999 99999999998875 2 145777777666552 2223
Q ss_pred ------CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 ------REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ------~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
++||+|+++.++++. +...+++.+.++|+|| |.++++.
T Consensus 106 ~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lkpg------G~l~i~~ 149 (299)
T 3g5t_A 106 ADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKD------GTIAIWG 149 (299)
T ss_dssp TTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred cccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCC------cEEEEEe
Confidence 689999999999999 9999999999999998 5655533
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=106.84 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=76.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++. .++.+...|+.+ ++.. .+|
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~~~-----~~~~-~~f 107 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP----------KEFSITEGDFLS-----FEVP-TSI 107 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC----------TTCCEESCCSSS-----CCCC-SCC
T ss_pred CCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC----------CceEEEeCChhh-----cCCC-CCe
Confidence 4779999999999999999854 689999999 999999987654 133344433333 2222 689
Q ss_pred cEEEEcCccCCCCCHHH--HHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFDP--LLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~--ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++++...... +++.+.++|+|| |.+++..
T Consensus 108 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~i~~ 145 (220)
T 3hnr_A 108 DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG------GKIVFAD 145 (220)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHSCTT------CEEEEEE
T ss_pred EEEEECcchhcCChHHHHHHHHHHHHhcCCC------CEEEEEe
Confidence 99999999999887766 999999999998 5655543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-12 Score=107.25 Aligned_cols=125 Identities=17% Similarity=0.092 Sum_probs=86.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---c
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV---V 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~---~ 179 (282)
++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++|+..++. .++.+...++.+ +.. .
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~-----~~~~~~~ 138 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAET-----FGQRKDV 138 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHH-----HTTCTTT
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHH-----hcccccc
Confidence 57799999999999999998543 479999999 9999999999988763 246666544322 221 1
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
..+||+|++..+ .....+++.+.++|+|| |.+++... .........+...++ .+|.+..+.
T Consensus 139 ~~~fD~V~~~~~----~~~~~~l~~~~~~Lkpg------G~l~~~~g-~~~~~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 139 RESYDIVTARAV----ARLSVLSELCLPLVKKN------GLFVALKA-ASAEEELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp TTCEEEEEEECC----SCHHHHHHHHGGGEEEE------EEEEEEEC-C-CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cCCccEEEEecc----CCHHHHHHHHHHhcCCC------CEEEEEeC-CCchHHHHHHHHHHHHcCCeEeEEE
Confidence 468999999663 56889999999999998 55444321 111112234444444 377776544
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-12 Score=108.80 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=87.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--- 178 (282)
.++.+|||||||+|..++.+|... +.+|+++|+ +.+++.+++|+..++. .++.+...++.+ +..
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~-----~~~~~~ 147 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEV-----LAREAG 147 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHH-----HTTSTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHH-----hhcccc
Confidence 357899999999999999998664 479999999 9999999999998874 246666654432 221
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc-cHHHHHHHHh-hcCceEEEc
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK-KDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~-~~~~f~~~~~-~~f~ve~v~ 251 (282)
...+||+|++..+ ..+..+++.+.++|+|| |.++++.. .... ....+...+. .+|.+..+.
T Consensus 148 ~~~~fD~I~s~a~----~~~~~ll~~~~~~Lkpg------G~l~~~~g--~~~~~e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 148 HREAYARAVARAV----APLCVLSELLLPFLEVG------GAAVAMKG--PRVEEELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp TTTCEEEEEEESS----CCHHHHHHHHGGGEEEE------EEEEEEEC--SCCHHHHTTHHHHHHHHTEEEEEEE
T ss_pred cCCCceEEEECCc----CCHHHHHHHHHHHcCCC------eEEEEEeC--CCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 1368999999643 46789999999999998 55544332 2221 1233333333 377766544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.6e-12 Score=106.57 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++.. ..++.+...+..+ ++....+|
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~-----~~~~~~~f 117 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLSS-----LPFENEQF 117 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTTB-----CSSCTTCE
T ss_pred CCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhcc---------cCCceEEEcchhc-----CCCCCCCc
Confidence 4779999999999999999854 689999999 999999887631 2356666655543 22235789
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++..++++..+...+++.+.++|+||
T Consensus 118 D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 146 (242)
T 3l8d_A 118 EAIMAINSLEWTEEPLRALNEIKRVLKSD 146 (242)
T ss_dssp EEEEEESCTTSSSCHHHHHHHHHHHEEEE
T ss_pred cEEEEcChHhhccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999998
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=103.31 Aligned_cols=125 Identities=9% Similarity=0.035 Sum_probs=86.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++|+..++. ..++ ....+.. ..++....
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~-~~~~d~~----~~~~~~~~ 93 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----SDRI-AVQQGAP----RAFDDVPD 93 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----TTSE-EEECCTT----GGGGGCCS
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----CCCE-EEecchH----hhhhccCC
Confidence 347799999999999999998654 479999999 9999999999988763 2345 4432221 23333237
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
.||+|+++.++++ ..+++.+.++|+|| |.+++.... ......+...++ .++++..+.
T Consensus 94 ~~D~i~~~~~~~~----~~~l~~~~~~L~~g------G~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 94 NPDVIFIGGGLTA----PGVFAAAWKRLPVG------GRLVANAVT---VESEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp CCSEEEECC-TTC----TTHHHHHHHTCCTT------CEEEEEECS---HHHHHHHHHHHHHHCCEEEEEE
T ss_pred CCCEEEECCcccH----HHHHHHHHHhcCCC------CEEEEEeec---cccHHHHHHHHHHcCCeeEEEE
Confidence 8999999988876 67899999999998 565543322 223344444443 356665443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-12 Score=107.47 Aligned_cols=102 Identities=19% Similarity=0.143 Sum_probs=79.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++.....+|+++|+ +.+++.++++... .++.+...|... ++....+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~-----~~~~~~~ 107 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------TGITYERADLDK-----LHLPQDS 107 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGGG-----CCCCTTC
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChhh-----ccCCCCC
Confidence 357899999999999999998653339999999 9999999875432 245555544433 2222568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|+++.++++..+...+++.+.++|+|| |.+++..
T Consensus 108 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg------G~l~~~~ 144 (243)
T 3bkw_A 108 FDLAYSSLALHYVEDVARLFRTVHQALSPG------GHFVFST 144 (243)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred ceEEEEeccccccchHHHHHHHHHHhcCcC------cEEEEEe
Confidence 999999999999999999999999999998 5655543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=109.76 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=84.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+ + +.+
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~---~~~ 155 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWED-----F---AEP 155 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGG-----C---CCC
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChHH-----C---CCC
Confidence 457899999999999999998766789999999 9999999999887653 3456666544433 2 368
Q ss_pred ccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|++..++++. .....+++.+.++|+|| |.+++...
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~ 195 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD------GRMTVQSS 195 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT------CEEEEEEE
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC------cEEEEEEe
Confidence 9999999999887 68899999999999998 66665544
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=109.04 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=77.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++... ++.+...+..+ + ....+|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~----------~v~~~~~d~~~-----~-~~~~~f 104 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD----------GITYIHSRFED-----A-QLPRRY 104 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS----------CEEEEESCGGG-----C-CCSSCE
T ss_pred CCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC----------CeEEEEccHHH-----c-CcCCcc
Confidence 4679999999999999999744 569999999 9999999875431 45555544433 2 135689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHH-HHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLR-LFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~-~ll~~g~~~~~~g~~~il~ 225 (282)
|+|++..++++..+...+++.+. ++|+|| |.+++..
T Consensus 105 D~v~~~~~l~~~~~~~~~l~~~~~~~Lkpg------G~l~i~~ 141 (250)
T 2p7i_A 105 DNIVLTHVLEHIDDPVALLKRINDDWLAEG------GRLFLVC 141 (250)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHTTEEEE------EEEEEEE
T ss_pred cEEEEhhHHHhhcCHHHHHHHHHHHhcCCC------CEEEEEc
Confidence 99999999999999999999999 999998 5655544
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.4e-13 Score=108.49 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=77.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..+|||||||+|.+++.++... .++|+++|+ +.|++.+++|+..++. ..++.+ .+.. . .....+|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~-----~~~v~~--~d~~-----~-~~~~~~~ 116 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT-----TIKYRF--LNKE-----S-DVYKGTY 116 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC-----SSEEEE--ECCH-----H-HHTTSEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CccEEE--eccc-----c-cCCCCCc
Confidence 6699999999999999997433 369999999 9999999999999874 224544 2211 1 1235789
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
|+|++..+++...+.+..+..+.+.|+|+ +++|.+.
T Consensus 117 DvVLa~k~LHlL~~~~~al~~v~~~L~pg-------gvfISfp 152 (200)
T 3fzg_A 117 DVVFLLKMLPVLKQQDVNILDFLQLFHTQ-------NFVISFP 152 (200)
T ss_dssp EEEEEETCHHHHHHTTCCHHHHHHTCEEE-------EEEEEEE
T ss_pred ChhhHhhHHHhhhhhHHHHHHHHHHhCCC-------CEEEEeC
Confidence 99999999987766666666888899987 6666555
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-12 Score=107.47 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=92.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC-
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG- 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~- 180 (282)
++++|||||||+|..++.+|... +++|+++|+ +.+++.+++|+..++. .+++.+...|..+ .++...
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~l~~~~~ 128 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----QDKVTILNGASQD----LIPQLKK 128 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHH----HGGGTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCceEEEECCHHH----HHHHHHH
Confidence 36799999999999999998643 579999999 9999999999998774 3457777655422 112222
Q ss_pred ----CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh--cCceEEEcccC
Q 023457 181 ----REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK--LFDVETIHADL 254 (282)
Q Consensus 181 ----~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~--~f~ve~v~~~~ 254 (282)
.+||+|++.....+......++..+ ++|+|| |.+ ++... .+.....|++.+.+ .|....++...
T Consensus 129 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg------G~l-v~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 198 (221)
T 3u81_A 129 KYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKG------TVL-LADNV--IVPGTPDFLAYVRGSSSFECTHYSSYL 198 (221)
T ss_dssp TSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTT------CEE-EESCC--CCCCCHHHHHHHHHCTTEEEEEEEEEE
T ss_pred hcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCC------eEE-EEeCC--CCcchHHHHHHHhhCCCceEEEccccc
Confidence 5899999875554333333456566 889998 443 33221 23334666666553 56666555333
Q ss_pred CCCCcccceEEEEE
Q 023457 255 PCNGARVGVVVYRM 268 (282)
Q Consensus 255 ~~~~~~~~~~v~~~ 268 (282)
+......|+.+-++
T Consensus 199 ~~~~~~dG~~~~~~ 212 (221)
T 3u81_A 199 EYMKVVDGLEKAIY 212 (221)
T ss_dssp TTTTEEEEEEEEEE
T ss_pred ccCCCCCceEEEEE
Confidence 33334445544433
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=106.92 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=79.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-Hh------HHHHHHHHHHhcccccccCCCcEEEEEEE-eCCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PH------VLTNLQFNVDANAGLISLRGGSVHVAPLR-WGEAEA 173 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~------~l~~~~~n~~~n~~~~~~~~~~v~~~~ld-~~~~~~ 173 (282)
.++.+|||||||+|..++.++...+ .+|+++|+ +. +++.+++++..++. ..++.+...| +..
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~--- 113 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----GDRLTVHFNTNLSD--- 113 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----GGGEEEECSCCTTT---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----CCceEEEECChhhh---
Confidence 3578999999999999999987754 79999999 76 89999999887653 2456666654 221
Q ss_pred cchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 174 NDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 174 ~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++...++||+|+++.++++......+++.++.++++|
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~g 152 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVC 152 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTC
T ss_pred ccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCC
Confidence 123333578999999999999988888888888888877
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.8e-12 Score=107.56 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=71.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++.. ++.+...|+.+ ++. ..+|
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~~-----~~~-~~~f 111 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP-----------DAVLHHGDMRD-----FSL-GRRF 111 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTT-----CCC-SCCE
T ss_pred CCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC-----------CCEEEECChHH-----CCc-cCCc
Confidence 3679999999999999999744 679999999 999999987632 34555555443 221 5789
Q ss_pred cEEEEcC-ccCCCC---CHHHHHHHHHHHHhcC
Q 023457 184 DVILASD-VVYHDH---LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd-~ly~~~---~~~~ll~~l~~ll~~g 212 (282)
|+|+++. ++++.. ....+++.+.++|+||
T Consensus 112 D~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 144 (263)
T 3pfg_A 112 SAVTCMFSSIGHLAGQAELDAALERFAAHVLPD 144 (263)
T ss_dssp EEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred CEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 9999997 888763 6678899999999998
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=103.99 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=76.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..+..++... +.+|+++|+ +.+++.+++++..+ .++.+...|+.+ ++. ..
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~-----~~~-~~ 108 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYSK-----YDF-EE 108 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTTT-----CCC-CS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchhc-----cCC-CC
Confidence 457899999999999999998665 579999999 99999998876542 256666655544 221 26
Q ss_pred CccEEEEcCccCCCCCHH--HHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFD--PLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~--~ll~~l~~ll~~g 212 (282)
+||+|+++.++++..... .+++.+.++|+||
T Consensus 109 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 141 (234)
T 3dtn_A 109 KYDMVVSALSIHHLEDEDKKELYKRSYSILKES 141 (234)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred CceEEEEeCccccCCHHHHHHHHHHHHHhcCCC
Confidence 899999999999886554 5999999999998
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.2e-13 Score=111.40 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--- 178 (282)
.++.+|||+|||+|..++.++... +.+|+++|+ +.+++.+++|+..++. ++.+...|+.+ .+..
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~----~~~~~~~ 97 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------VVDWAAADGIE----WLIERAE 97 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHH----HHHHHHH
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-------ceEEEEcchHh----hhhhhhh
Confidence 357899999999999999998765 359999999 9999999999887652 23333222221 1110
Q ss_pred cCCCccEEEEcCccCCCCCH--------------------------HHHHHHHHHHHhcC
Q 023457 179 VGREFDVILASDVVYHDHLF--------------------------DPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~--------------------------~~ll~~l~~ll~~g 212 (282)
...+||+|+++.+++..... ..+++.+.++|+||
T Consensus 98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 13789999998776543322 67778888999998
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=102.62 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=78.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~ 180 (282)
++.+|||+|||+|..++.++...+ ++|+++|+ +.+++.+++|+..++. ..++.+...|+.+ +. ...
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~~~~~~ 91 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----IDRVTLIKDGHQN-----MDKYID 91 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----GGGEEEECSCGGG-----GGGTCC
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHH-----Hhhhcc
Confidence 478999999999999999987753 69999999 9999999999998763 2456666655433 22 234
Q ss_pred CCccEEEEcCccCC---------CCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYH---------DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~---------~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.+||+|+++.+++. ......+++.+.++|+|| |.++++.
T Consensus 92 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g------G~l~~~~ 139 (197)
T 3eey_A 92 CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG------GIITVVI 139 (197)
T ss_dssp SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC------CEEEEEE
Confidence 68999998765422 113457999999999998 5555544
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=111.76 Aligned_cols=141 Identities=16% Similarity=0.098 Sum_probs=89.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc------------c-----------CCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS------------L-----------RGG 159 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~------------~-----------~~~ 159 (282)
.++.+|||||||+|..++.++.....+|+++|+ +.|++.+++++..+....+ . ...
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 468899999999998887766443357999999 9999999988765421100 0 001
Q ss_pred cEE-EEEEEeCCCCccchh-hcCCCccEEEEcCccCCC----CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC---
Q 023457 160 SVH-VAPLRWGEAEANDVA-VVGREFDVILASDVVYHD----HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR--- 230 (282)
Q Consensus 160 ~v~-~~~ld~~~~~~~~~~-~~~~~fD~Ii~sd~ly~~----~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~--- 230 (282)
.+. +...|..+.. .+. ...++||+|+++.++++. +++..+++.+.++|+|| |.+++.......
T Consensus 134 ~i~~~~~~D~~~~~--~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPG------G~li~~~~~~~~~~~ 205 (263)
T 2a14_A 134 AVKRVLKCDVHLGN--PLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG------GHLVTTVTLRLPSYM 205 (263)
T ss_dssp HEEEEEECCTTSSS--TTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE------EEEEEEEESSCCEEE
T ss_pred hhheEEeccccCCC--CCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCC------cEEEEEEeecCccce
Confidence 122 4444443311 111 124589999999998763 45578899999999998 555554321110
Q ss_pred ---------cccHHHHHHHHh-hcCceEEEcc
Q 023457 231 ---------WKKDSVFFKKAK-KLFDVETIHA 252 (282)
Q Consensus 231 ---------~~~~~~f~~~~~-~~f~ve~v~~ 252 (282)
+-....+.+.+. .||.+..+..
T Consensus 206 ~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 206 VGKREFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred eCCeEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 113455666665 5898876654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=99.96 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=87.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.++. .+.+|+++|+ +.+++.+++|+..++. .++.+...|+.+ .+ ....|
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~----~~--~~~~~ 101 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNCQIIKGRAED----VL--DKLEF 101 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC------CSEEEEESCHHH----HG--GGCCC
T ss_pred CCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEECCccc----cc--cCCCC
Confidence 477999999999999999985 6689999999 9999999999988763 356666554433 11 23689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
|+|+++.+ .....+++.+.++ |+ |.+++... .......+.+.++ .+|.++.+.
T Consensus 102 D~i~~~~~----~~~~~~l~~~~~~--~g------G~l~~~~~---~~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 102 NKAFIGGT----KNIEKIIEILDKK--KI------NHIVANTI---VLENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp SEEEECSC----SCHHHHHHHHHHT--TC------CEEEEEES---CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEECCc----ccHHHHHHHHhhC--CC------CEEEEEec---ccccHHHHHHHHHHcCCeEEEEE
Confidence 99999888 6788999999988 66 45444332 2333455566555 478888765
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=105.65 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=73.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.++.....+|+++|+ +.+++.+++|+..++. .++.+...|+.+ .++.....|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~D~~~----~~~~~~~~f 123 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMS----FLAQKGTPH 123 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHH----HHSSCCCCE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHH----HHhhcCCCC
Confidence 36799999999999999877565569999999 9999999999998763 245555433322 122224689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHH--HHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRL--FLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~--ll~~g 212 (282)
|+|++..+ |+......+++.+.+ +|+|+
T Consensus 124 D~V~~~~p-~~~~~~~~~l~~l~~~~~L~pg 153 (202)
T 2fpo_A 124 NIVFVDPP-FRRGLLEETINLLEDNGWLADE 153 (202)
T ss_dssp EEEEECCS-SSTTTHHHHHHHHHHTTCEEEE
T ss_pred CEEEECCC-CCCCcHHHHHHHHHhcCccCCC
Confidence 99999766 667788888988876 48887
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-12 Score=107.26 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=73.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~~ 182 (282)
++.+|||+|||+|..++.++.....+|+++|+ +.+++.+++|+..++.. ..++.+...|..+ .... ...+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~v~~~~~d~~~----~~~~~~~~~ 124 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLD----FLKQPQNQP 124 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHH----HTTSCCSSC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----ccceEEEECCHHH----HHHhhccCC
Confidence 36799999999999999877565579999999 99999999999987631 1356655543322 0111 1357
Q ss_pred -ccEEEEcCccCCCCCHHHHHHHH--HHHHhcC
Q 023457 183 -FDVILASDVVYHDHLFDPLLVTL--RLFLNSG 212 (282)
Q Consensus 183 -fD~Ii~sd~ly~~~~~~~ll~~l--~~ll~~g 212 (282)
||+|+++.+ |+......+++.+ .++|+||
T Consensus 125 ~fD~I~~~~~-~~~~~~~~~l~~~~~~~~Lkpg 156 (201)
T 2ift_A 125 HFDVVFLDPP-FHFNLAEQAISLLCENNWLKPN 156 (201)
T ss_dssp CEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEECCC-CCCccHHHHHHHHHhcCccCCC
Confidence 999999777 5666778888888 4579998
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-12 Score=104.60 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=76.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.++.....+|+++|+ +.+++.+++|+..++. ..++.+...|+.+.. ..++....+|
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~-~~~~~~~~~f 117 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRAL-EQFYEEKLQF 117 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHH-HHHHHTTCCE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcceEEEECcHHHHH-HHHHhcCCCC
Confidence 47799999999999999887654579999999 9999999999988763 235677665544310 0011115689
Q ss_pred cEEEEcCccCCCCCHHHHHHHH--HHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTL--RLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l--~~ll~~g 212 (282)
|+|+++.+ |+......+++.+ .++|+||
T Consensus 118 D~i~~~~~-~~~~~~~~~~~~l~~~~~L~~g 147 (187)
T 2fhp_A 118 DLVLLDPP-YAKQEIVSQLEKMLERQLLTNE 147 (187)
T ss_dssp EEEEECCC-GGGCCHHHHHHHHHHTTCEEEE
T ss_pred CEEEECCC-CCchhHHHHHHHHHHhcccCCC
Confidence 99999776 5566778888888 6778998
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=103.97 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=79.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++...++ .++.+...|+.+ ++....+||
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~-----~~~~~~~~D 105 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE-------SNVEFIVGDARK-----LSFEDKTFD 105 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCTTS-----CCSCTTCEE
T ss_pred CCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC-------CCceEEECchhc-----CCCCCCcEE
Confidence 679999999999999998855 459999999 999999999987754 245666655443 222246899
Q ss_pred EEEEcCc--cCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 185 VILASDV--VYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 185 ~Ii~sd~--ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+|+++++ +++......+++.+.++|+|| |.+++..
T Consensus 106 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~~g------G~l~~~~ 142 (227)
T 1ve3_A 106 YVIFIDSIVHFEPLELNQVFKEVRRVLKPS------GKFIMYF 142 (227)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred EEEEcCchHhCCHHHHHHHHHHHHHHcCCC------cEEEEEe
Confidence 9999999 666667889999999999998 5555543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=105.40 Aligned_cols=103 Identities=11% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.++...+.+|+++|+ +.+++.+++++..++. ++.+...|..+ ++....+|
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~~-----~~~~~~~f 90 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF-------KLNISKGDIRK-----LPFKDESM 90 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC-------CCCEEECCTTS-----CCSCTTCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-------ceEEEECchhh-----CCCCCCce
Confidence 46799999999999855544456789999999 9999999998876542 34445444433 22235689
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++++. .....+++.+.++|+|| |.+++..
T Consensus 91 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~ 128 (209)
T 2p8j_A 91 SFVYSYGTIFHMRKNDVKEAIDEIKRVLKPG------GLACINF 128 (209)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred eEEEEcChHHhCCHHHHHHHHHHHHHHcCCC------cEEEEEE
Confidence 999999999887 67889999999999998 5555544
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-11 Score=108.90 Aligned_cols=136 Identities=19% Similarity=0.178 Sum_probs=92.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||||||+|.+++.++...+ .+|+++|+ +.+++.+++|+..++. .+.+...|... ....+|
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------~~~~~~~d~~~-------~~~~~f 262 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-------EGEVFASNVFS-------EVKGRF 262 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTTT-------TCCSCE
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------CCEEEEccccc-------cccCCe
Confidence 56999999999999999987654 59999999 9999999999988764 12333222221 124689
Q ss_pred cEEEEcCccCC-----CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCC
Q 023457 184 DVILASDVVYH-----DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNG 258 (282)
Q Consensus 184 D~Ii~sd~ly~-----~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~ 258 (282)
|+|+++.++++ ......+++.+.++|+|| |.++++... +.....+++..-. .++.+.
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkpg------G~l~i~~~~---~~~~~~~l~~~f~--~~~~~~------- 324 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSG------GELRIVANA---FLPYPDVLDETFG--FHEVIA------- 324 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEE------EEEEEEEET---TSSHHHHHHHHHS--CCEEEE-------
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCC------cEEEEEEcC---CCCcHHHHHHhcC--ceEEEe-------
Confidence 99999988764 334678999999999998 565554432 2223333333322 334444
Q ss_pred cccceEEEEEeeecC
Q 023457 259 ARVGVVVYRMTGKAK 273 (282)
Q Consensus 259 ~~~~~~v~~~~~~~~ 273 (282)
...++.+|+..+.+.
T Consensus 325 ~~~gf~v~~~~k~r~ 339 (343)
T 2pjd_A 325 QTGRFKVYRAIMTRQ 339 (343)
T ss_dssp ECSSEEEEEEEC---
T ss_pred eCCCEEEEEEEeCCC
Confidence 345788888876553
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.4e-12 Score=105.94 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=74.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++...++. ++.+...|+.. ++. ..+|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~~-----~~~-~~~f 102 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL-------KPRLACQDISN-----LNI-NRKF 102 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC-------CCEEECCCGGG-----CCC-SCCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC-------CeEEEeccccc-----CCc-cCCc
Confidence 4779999999999999998744 689999999 9999999998876542 34444433332 222 2689
Q ss_pred cEEEEcC-ccCCC---CCHHHHHHHHHHHHhcC
Q 023457 184 DVILASD-VVYHD---HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd-~ly~~---~~~~~ll~~l~~ll~~g 212 (282)
|+|+++. ++++. .....+++.+.++|+||
T Consensus 103 D~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 135 (246)
T 1y8c_A 103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred eEEEEcCccccccCCHHHHHHHHHHHHHhcCCC
Confidence 9999997 99887 67788999999999998
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=101.50 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=89.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||+|||+|..++.++... .+|+++|+ +.+++.+++++..++. ..++.+...++.+ .++. ...
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~----~~~~-~~~ 100 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPE----ALCK-IPD 100 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHH----HHTT-SCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecCHHH----hccc-CCC
Confidence 357899999999999999998555 89999999 9999999999988763 2456666544332 1111 258
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
||+|+++.++ .....+++.+.++|+|| |.+++.... ......+.+.++ .+|.++.+.
T Consensus 101 ~D~v~~~~~~---~~~~~~l~~~~~~l~~g------G~l~~~~~~---~~~~~~~~~~l~~~g~~~~~~~ 158 (192)
T 1l3i_A 101 IDIAVVGGSG---GELQEILRIIKDKLKPG------GRIIVTAIL---LETKFEAMECLRDLGFDVNITE 158 (192)
T ss_dssp EEEEEESCCT---TCHHHHHHHHHHTEEEE------EEEEEEECB---HHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEECCch---HHHHHHHHHHHHhcCCC------cEEEEEecC---cchHHHHHHHHHHCCCceEEEE
Confidence 9999998776 35789999999999998 454443322 223455555554 478776554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=105.99 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=79.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++. .+.+|+++|+ +.|++.+++++..+ ....+|.+...........+
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~-~g~~V~gvD~S~~ml~~Ar~~~~~~------------~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALE-RGASVTVFDFSQRMCDDLAEALADR------------CVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTSSS------------CCEEEECCTTSCCCGGGTTC
T ss_pred CCcCEEEEEeCcchHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHhc------------cceeeeeecccccccccCCC
Confidence 4578999999999999999985 4689999999 99999999887543 13345554222001122468
Q ss_pred ccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHH
Q 023457 183 FDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFK 239 (282)
Q Consensus 183 fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~ 239 (282)
||+|+++.++++. +....+++.+.+++ || |.+++ ......+......+.
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG------G~l~l-S~~~g~~~~d~~~l~ 161 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GS------GTVRA-SVKLGFYDIDLKLIE 161 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT------SEEEE-EEEBSCCHHHHHHHH
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC------cEEEE-EeccCcccccHHHHH
Confidence 9999999988753 45677899999999 98 55544 433333433333333
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-12 Score=104.17 Aligned_cols=98 Identities=12% Similarity=0.147 Sum_probs=73.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.++.....+|+++|+ +.+++.+++|+..++. ..++.+...|+.+ .++.....|
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~----~~~~~~~~f 101 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAER----AIDCLTGRF 101 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHH----HHHHBCSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcHHH----hHHhhcCCC
Confidence 47799999999999999998664479999999 9999999999988763 2356665544332 122234679
Q ss_pred cEEEEcCccCCCCCHHHHHHHHH--HHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLR--LFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~--~ll~~g 212 (282)
|+|+++.+ |+....+.+++.+. ++|+||
T Consensus 102 D~i~~~~~-~~~~~~~~~~~~l~~~~~L~~g 131 (177)
T 2esr_A 102 DLVFLDPP-YAKETIVATIEALAAKNLLSEQ 131 (177)
T ss_dssp EEEEECCS-SHHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEECCC-CCcchHHHHHHHHHhCCCcCCC
Confidence 99999765 43345667777777 788988
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-12 Score=104.07 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.++.....+|+++|+ +.+++.++++... ..++.+...|..+ ++....+|
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~-----~~~~~~~f 108 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRK-----LDFPSASF 108 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTS-----CCSCSSCE
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhc-----CCCCCCcc
Confidence 47799999999999999998664459999999 9999999987653 1245566555443 22224689
Q ss_pred cEEEEcCccCCC---------------CCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHD---------------HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~---------------~~~~~ll~~l~~ll~~g 212 (282)
|+|+++.++.+. .....+++.+.++|+||
T Consensus 109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 152 (215)
T 2pxx_A 109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG 152 (215)
T ss_dssp EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE
T ss_pred cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC
Confidence 999998776432 25678999999999998
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-10 Score=97.91 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=80.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+.++.... .++.....|... .........
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--------~~v~~~~~d~~~--~~~~~~~~~ 125 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASK--PWKYSGIVE 125 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTC--GGGTTTTCC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--------CCeEEEEcCCCC--chhhccccc
Confidence 4578999999999999999986653 69999999 88887666555432 133333222221 101011236
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee---cCcccHHHH---HHHHhhcCceEEEcccCC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL---RRWKKDSVF---FKKAKKLFDVETIHADLP 255 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~---~~~~~~~~f---~~~~~~~f~ve~v~~~~~ 255 (282)
+||+|+++ + ........+++.+.++|+|| |.+++..... .+......| .+.+++.|++.......|
T Consensus 126 ~fD~V~~~-~-~~~~~~~~~l~~~~r~Lkpg------G~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~p 197 (210)
T 1nt2_A 126 KVDLIYQD-I-AQKNQIEILKANAEFFLKEK------GEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMP 197 (210)
T ss_dssp CEEEEEEC-C-CSTTHHHHHHHHHHHHEEEE------EEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECTT
T ss_pred ceeEEEEe-c-cChhHHHHHHHHHHHHhCCC------CEEEEEEecCCccccCCHHHHHHHHHHHHHhhcEEeeeecCCC
Confidence 89999986 2 22333455689999999998 6666653221 111223333 222343387766554434
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-12 Score=110.12 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=95.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccc------------cccC------------CC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL------------ISLR------------GG 159 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~------------~~~~------------~~ 159 (282)
++.+|||||||+|...+.++...+.+|+++|+ +.|++.+++++..+... .... ..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 57899999999999666555444679999999 99999988865421100 0000 00
Q ss_pred cEEEEEEEeCCCCc-cchhhcCCCccEEEEcCccCC----CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee------
Q 023457 160 SVHVAPLRWGEAEA-NDVAVVGREFDVILASDVVYH----DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL------ 228 (282)
Q Consensus 160 ~v~~~~ld~~~~~~-~~~~~~~~~fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~------ 228 (282)
.+.+...|..+..+ .......++||+|+++.++++ ..+...+++.+.++|+|| |.+++.....
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpG------G~l~~~~~~~~~~~~~ 224 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG------GHLLLIGALEESWYLA 224 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE------EEEEEEEEESCCEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCC------CEEEEEEecCcceEEc
Confidence 12333333332110 000112356999999999987 557889999999999998 5655542211
Q ss_pred ------cCcccHHHHHHHHh-hcCceEEEcccC-----CCCCcccceEEEEEeeecC
Q 023457 229 ------RRWKKDSVFFKKAK-KLFDVETIHADL-----PCNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 229 ------~~~~~~~~f~~~~~-~~f~ve~v~~~~-----~~~~~~~~~~v~~~~~~~~ 273 (282)
..+.....+...++ .||.+..+.... ........-.+|.+.++++
T Consensus 225 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (289)
T 2g72_A 225 GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVG 281 (289)
T ss_dssp TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC
T ss_pred CCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEeccc
Confidence 11123455666665 489776544221 1111223335566666554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.29 E-value=8.2e-12 Score=107.60 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=82.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++ .+. ..++.+...|+.+ ++....+
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~~~------~~~~~~~~~d~~~-----~~~~~~~ 104 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-AGV------DRKVQVVQADARA-----IPLPDES 104 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-TTS------CTTEEEEESCTTS-----CCSCTTC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-hcc------CCceEEEEccccc-----CCCCCCC
Confidence 34779999999999999999854 689999999 99999999887 221 3467777655543 2223568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
||+|+++.++++..+...+++.+.++|+|| |.+++.
T Consensus 105 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg------G~l~~~ 140 (263)
T 2yqz_A 105 VHGVIVVHLWHLVPDWPKVLAEAIRVLKPG------GALLEG 140 (263)
T ss_dssp EEEEEEESCGGGCTTHHHHHHHHHHHEEEE------EEEEEE
T ss_pred eeEEEECCchhhcCCHHHHHHHHHHHCCCC------cEEEEE
Confidence 999999999999989999999999999998 565555
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=106.20 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=88.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|+.++.+|+++|+ +.+++.+++|+..|+. .+++.+...|..+ +.. ...|
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----~~~v~~~~~D~~~-----~~~-~~~f 193 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRD-----FPG-ENIA 193 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTT-----CCC-CSCE
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECCHHH-----hcc-cCCc
Confidence 37899999999999999999765557999999 9999999999999885 3456666555443 111 5689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC---cccHHHHHHHHh-hcCceEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR---WKKDSVFFKKAK-KLFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~---~~~~~~f~~~~~-~~f~ve~ 249 (282)
|+|++..+ .....++..+.++|+|| |.+++....... ......+.+.+. .+|.++.
T Consensus 194 D~Vi~~~p----~~~~~~l~~~~~~Lkpg------G~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 194 DRILMGYV----VRTHEFIPKALSIAKDG------AIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp EEEEECCC----SSGGGGHHHHHHHEEEE------EEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred cEEEECCc----hhHHHHHHHHHHHCCCC------eEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 99999644 23467788889999998 555444433211 122345555554 4888876
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-11 Score=106.39 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=74.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++..++... ..++.+...|+.+ ++. ..+||
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~~~v~~~~~d~~~-----~~~-~~~fD 152 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADV---RDRCTLVQGDMSA-----FAL-DKRFG 152 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHH---HTTEEEEECBTTB-----CCC-SCCEE
T ss_pred CCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhccccc---ccceEEEeCchhc-----CCc-CCCcC
Confidence 449999999999999999854 689999999 999999999988654210 1367777766554 221 57899
Q ss_pred EEEEc-CccCCCC--CHHHHHHHHHHHHhcC
Q 023457 185 VILAS-DVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~s-d~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
+|+++ .++++.. ....+++.+.++|+||
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 183 (299)
T 3g2m_A 153 TVVISSGSINELDEADRRGLYASVREHLEPG 183 (299)
T ss_dssp EEEECHHHHTTSCHHHHHHHHHHHHHHEEEE
T ss_pred EEEECCcccccCCHHHHHHHHHHHHHHcCCC
Confidence 99975 5555443 4689999999999998
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=103.13 Aligned_cols=124 Identities=13% Similarity=0.029 Sum_probs=86.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch--hhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV--AVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~--~~~~ 180 (282)
.++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++ +.+...+ ..+. +...
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~--------------~~~~~~d-----~~~~~~~~~~ 99 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK--------------FNVVKSD-----AIEYLKSLPD 99 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT--------------SEEECSC-----HHHHHHTSCT
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh--------------cceeecc-----HHHHhhhcCC
Confidence 35789999999999999998855 678999999 8999888764 1222211 1121 2235
Q ss_pred CCccEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc---------------ccHHHHHHHHh-
Q 023457 181 REFDVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW---------------KKDSVFFKKAK- 242 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~---------------~~~~~f~~~~~- 242 (282)
++||+|+++.++++.. ....+++.+.++|+|| |.+++........ .....+...++
T Consensus 100 ~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (240)
T 3dli_A 100 KYLDGVMISHFVEHLDPERLFELLSLCYSKMKYS------SYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEY 173 (240)
T ss_dssp TCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTT------CCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHH
T ss_pred CCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCC------cEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHH
Confidence 7899999999999887 5699999999999998 6766654432211 12344444554
Q ss_pred hcCceEEEccc
Q 023457 243 KLFDVETIHAD 253 (282)
Q Consensus 243 ~~f~ve~v~~~ 253 (282)
.||++..+...
T Consensus 174 aGf~~~~~~~~ 184 (240)
T 3dli_A 174 LGFRDVKIEFF 184 (240)
T ss_dssp HTCEEEEEEEE
T ss_pred CCCeEEEEEEe
Confidence 48887655543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-11 Score=99.50 Aligned_cols=129 Identities=14% Similarity=0.061 Sum_probs=89.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~ 180 (282)
++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++|+..++. .++.+...|+.+ +. ...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~-----~~~~~~~ 109 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSD-----LTDYFED 109 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSC-----GGGTSCT
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHH-----HHhhcCC
Confidence 36799999999999999998766 369999999 9999999999988763 357777665544 22 124
Q ss_pred CCccEEEEcCccCCCC--------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 181 REFDVILASDVVYHDH--------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
..||+|+++.+..+.. ....+++.+.++|+|| |.+++ ..... .......+.+. .+|.+..+.
T Consensus 110 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~l~~-~~~~~--~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 110 GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN------GEIHF-KTDNR--GLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp TCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT------CEEEE-EESCH--HHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCC------cEEEE-EeCCH--HHHHHHHHHHHHCCCeeeecc
Confidence 6799999985542221 2468999999999998 55444 32211 11233333333 478877665
Q ss_pred cc
Q 023457 252 AD 253 (282)
Q Consensus 252 ~~ 253 (282)
.+
T Consensus 181 ~d 182 (214)
T 1yzh_A 181 LD 182 (214)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=107.97 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=79.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++ .++.+...|..+ ++. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~v~~~~~d~~~-----~~~-~ 87 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEGDATE-----IEL-N 87 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------SEEEEEESCTTT-----CCC-S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------CceEEEEcchhh-----cCc-C
Confidence 457899999999999999998654 379999999 999999999887643 256666655543 222 4
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|++..++++..+...+++.+.++|+||
T Consensus 88 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg 119 (284)
T 3gu3_A 88 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKG 119 (284)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE
T ss_pred CCeeEEEECChhhcCCCHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999998
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-11 Score=100.22 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++ ++ ..++.+...|..+ + ....+|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~------~~~~~~~~~d~~~-----~-~~~~~~ 108 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HG------LDNVEFRQQDLFD-----W-TPDRQW 108 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GC------CTTEEEEECCTTS-----C-CCSSCE
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cC------CCCeEEEeccccc-----C-CCCCce
Confidence 4679999999999999999865 789999999 999998876 22 2456777665544 1 235789
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g 212 (282)
|+|+++.++++... ...+++.+.++|+||
T Consensus 109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg 139 (218)
T 3ou2_A 109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPG 139 (218)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred eEEEEechhhcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999998776 489999999999998
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-12 Score=109.77 Aligned_cols=108 Identities=16% Similarity=0.270 Sum_probs=76.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHH----Hh-CCE--EEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAA----IL-GAK--VTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~----~~-~~~--V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
.++.+|||||||+|.++..++. .. ... ++++|. +.|++.+++++..... ..++. +.|......+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-----~~~v~---~~~~~~~~~~ 122 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN-----LENVK---FAWHKETSSE 122 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS-----CTTEE---EEEECSCHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC-----CCcce---EEEEecchhh
Confidence 3567999999999987654332 21 344 499999 9999999988764310 12333 2344433333
Q ss_pred hh------hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 176 VA------VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 176 ~~------~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+. ..+++||+|+++.++++.++...+++.+.++|+|| |.++++.
T Consensus 123 ~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg------G~l~i~~ 172 (292)
T 2aot_A 123 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN------AKMLIIV 172 (292)
T ss_dssp HHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE------EEEEEEE
T ss_pred hhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCC------cEEEEEE
Confidence 32 12578999999999999999999999999999998 6665553
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=109.86 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=78.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.++++|||||||+|.+++.+++.+..+|+++|+..+++.+++++..|+. ..++.+...+..+ ++....+|
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~-----~~~~~~~~ 132 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----EDTITLIKGKIEE-----VHLPVEKV 132 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----TTTEEEEESCTTT-----SCCSCSCE
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCC-----CCcEEEEEeeHHH-----hcCCCCcE
Confidence 4588999999999999999986654699999993399999999998874 4567777655543 22224689
Q ss_pred cEEEEcCc---cCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDV---VYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~---ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++..+ +.+......++..+.++|+||
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg 164 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKG 164 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCC
Confidence 99999764 445667788999999999998
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-11 Score=105.49 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=78.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++. .+.+|+++|+ +.+++.++++. .++.+...|... ++. ..+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~-----~~~-~~~ 117 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY-----------PHLHFDVADARN-----FRV-DKP 117 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC-----------TTSCEEECCTTT-----CCC-SSC
T ss_pred CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC-----------CCCEEEECChhh-----CCc-CCC
Confidence 3577999999999999999985 6689999999 99999988764 123444444433 222 468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|+++.++++..+...+++.+.++|+|| |.+++...
T Consensus 118 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg------G~l~~~~~ 155 (279)
T 3ccf_A 118 LDAVFSNAMLHWVKEPEAAIASIHQALKSG------GRFVAEFG 155 (279)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEE------EEEEEEEE
T ss_pred cCEEEEcchhhhCcCHHHHHHHHHHhcCCC------cEEEEEec
Confidence 999999999999899999999999999998 56555443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=109.10 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=78.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHH--HHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAA--AILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la--~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..++.++ ...+.+|+++|+ +.+++.+++++..++. ..++.+...|+.+ ++. .
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~~~-~ 185 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----AGQITLHRQDAWK-----LDT-R 185 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEECCGGG-----CCC-C
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECchhc-----CCc-c
Confidence 357899999999999999884 223579999999 9999999999987664 3457777766554 222 2
Q ss_pred CCccEEEEcCccCCCCCHHH---HHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDP---LLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~---ll~~l~~ll~~g 212 (282)
..||+|+++.++++..+... +++.+.++|+||
T Consensus 186 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 220 (305)
T 3ocj_A 186 EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPG 220 (305)
T ss_dssp SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 78999999999988766665 799999999998
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-12 Score=110.92 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=76.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---hcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA---VVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~---~~~ 180 (282)
++.+|||||||+|..++.++.. +.+|+++|+ +.+++.+++++........ ..++.+...++.. ++ ...
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~--~~~~~~~~~d~~~-----~~~~~~~~ 128 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPA--FDKWVIEEANWLT-----LDKDVPAG 128 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHH--HHTCEEEECCGGG-----HHHHSCCT
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccc--cceeeEeecChhh-----CccccccC
Confidence 4679999999999999999854 679999999 9999999988754332110 1234444444332 22 235
Q ss_pred CCccEEEEc-CccCCCCC-------HHHHHHHHHHHHhcC
Q 023457 181 REFDVILAS-DVVYHDHL-------FDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~s-d~ly~~~~-------~~~ll~~l~~ll~~g 212 (282)
.+||+|++. .++++... ...+++.+.++|+||
T Consensus 129 ~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg 168 (293)
T 3thr_A 129 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 168 (293)
T ss_dssp TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence 789999998 89988888 999999999999998
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=110.84 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=80.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.++++|||||||+|.+++.+++....+|+++|+..+++.+++++..|+. .+++.+...++.+. +....+|
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~-----~~~~~~f 134 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----DHVVTIIKGKVEEV-----ELPVEKV 134 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----TTTEEEEESCTTTC-----CCSSSCE
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCC-----CCcEEEEECcHHHc-----cCCCCce
Confidence 4588999999999999999987655699999994499999999998874 45688887666552 2224789
Q ss_pred cEEEEcCc---cCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDV---VYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~---ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++..+ +.+....+.++..+.++|+||
T Consensus 135 D~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkpg 166 (349)
T 3q7e_A 135 DIIISEWMGYCLFYESMLNTVLHARDKWLAPD 166 (349)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred EEEEEccccccccCchhHHHHHHHHHHhCCCC
Confidence 99999765 345578999999999999998
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-11 Score=96.29 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=90.2
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLI 154 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~ 154 (282)
+.+..|.+++.... .++.+|||||||+|.+++.++... +|+++|+ +.+++. .+
T Consensus 8 ~~~~~l~~~l~~~~--------------~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~~---- 61 (170)
T 3q87_B 8 EDTYTLMDALEREG--------------LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------HR---- 61 (170)
T ss_dssp HHHHHHHHHHHHHT--------------CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------CS----
T ss_pred ccHHHHHHHHHhhc--------------CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------cc----
Confidence 45566666664421 236799999999999999998544 9999999 888876 11
Q ss_pred ccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCH---------HHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 155 SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLF---------DPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 155 ~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~---------~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
++.+...|+.+ .+ ...+||+|+++.+++..... ..++..+.+.+ |+ |.++++.
T Consensus 62 -----~~~~~~~d~~~----~~--~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pg------G~l~~~~ 123 (170)
T 3q87_B 62 -----GGNLVRADLLC----SI--NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TV------GMLYLLV 123 (170)
T ss_dssp -----SSCEEECSTTT----TB--CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CS------SEEEEEE
T ss_pred -----CCeEEECChhh----hc--ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CC------CEEEEEE
Confidence 23445544433 11 13689999998777653322 45666666666 76 5655544
Q ss_pred EeecCcccHHHHHHHHh-hcCceEEEcccCCCCCcccceEEEEEeeec
Q 023457 226 AHLRRWKKDSVFFKKAK-KLFDVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 226 ~~~~~~~~~~~f~~~~~-~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
... .....+.+.++ .+|.+..+....... -++|.+..++
T Consensus 124 ~~~---~~~~~l~~~l~~~gf~~~~~~~~~~~~-----e~~~~~~~~~ 163 (170)
T 3q87_B 124 IEA---NRPKEVLARLEERGYGTRILKVRKILG-----ETVYIIKGEK 163 (170)
T ss_dssp EGG---GCHHHHHHHHHHTTCEEEEEEEEECSS-----SEEEEEEEEC
T ss_pred ecC---CCHHHHHHHHHHCCCcEEEEEeeccCC-----ceEEEEEEec
Confidence 332 23445555554 489887776543211 1566666554
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=107.74 Aligned_cols=105 Identities=15% Similarity=0.085 Sum_probs=81.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~~ 182 (282)
++.+|||||||+|..+..++.....+|+++|+ +.+++.+++++..++. ..++.+...|..+. +. ....
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-----~~~~~~~ 133 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGR-----HMDLGKE 133 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTS-----CCCCSSC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CccEEEEECCcccc-----ccCCCCC
Confidence 47799999999999999887654459999999 9999999999887552 24566666555441 11 2568
Q ss_pred ccEEEEcCccCC----CCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYH----DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++..++++ ......+++.+.++|+|| |.+++..
T Consensus 134 fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~ 174 (298)
T 1ri5_A 134 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG------GYFIMTV 174 (298)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE------EEEEEEE
T ss_pred cCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCC------CEEEEEE
Confidence 999999999865 456788999999999998 5655544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-11 Score=101.49 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=72.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~ 180 (282)
.+.+|||||||+|..++.+|...+ ..|+++|+ +.+++.+++++..++. .++.+...|..+ .++ ...
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~----~l~~~~~~ 103 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVE----VLHKMIPD 103 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHH----HHHHHSCT
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHH----HHHHHcCC
Confidence 467999999999999999987654 68999999 9999999999988763 245555433221 112 235
Q ss_pred CCccEEEEc--CccCCCCCH------HHHHHHHHHHHhcC
Q 023457 181 REFDVILAS--DVVYHDHLF------DPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~s--d~ly~~~~~------~~ll~~l~~ll~~g 212 (282)
..||.|++. +........ ..+++.+.++|+||
T Consensus 104 ~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG 143 (218)
T 3dxy_A 104 NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG 143 (218)
T ss_dssp TCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE
T ss_pred CChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC
Confidence 789999997 544433222 36999999999998
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=103.82 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=75.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++..+ .+|+++|+ +.+++.++++.. ..++.+...|..+............
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~-~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~~~~~~ 124 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFF-PRVIGLDVSKSALEIAAKENT---------AANISYRLLDGLVPEQAAQIHSEIG 124 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHS-SCEEEEESCHHHHHHHHHHSC---------CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhC-CCEEEEECCHHHHHHHHHhCc---------ccCceEEECcccccccccccccccC
Confidence 357899999999999999998655 59999999 999999988762 2256666655544110000000135
Q ss_pred ccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++.. ....+++.+.++|+||
T Consensus 125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 156 (245)
T 3ggd_A 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQ 156 (245)
T ss_dssp SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTT
T ss_pred ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999887 7899999999999998
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-12 Score=109.50 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|.+|||||||+|..+..+++..+.+|+++|+ +.+++.++++...++ ..+.+...+|... .......+|
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~---~~~~~~~~F 129 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDV---APTLPDGHF 129 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHH---GGGSCTTCE
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-------CceEEEeehHHhh---cccccccCC
Confidence 48899999999999999988655679999999 999999999877644 3455555554331 112235689
Q ss_pred cEEEE-----cCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILA-----SDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~-----sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|.|+. .....+..+.+.+++.+.++|+||
T Consensus 130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG 163 (236)
T 3orh_A 130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred ceEEEeeeecccchhhhcchhhhhhhhhheeCCC
Confidence 99975 233345556788999999999998
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-11 Score=99.81 Aligned_cols=99 Identities=17% Similarity=0.097 Sum_probs=74.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-C
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-G 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~ 180 (282)
++++|||||||+|..++.++... +++|+++|+ +.+++.+++|+..++. ..++.+...|..+. ...+... .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~~~~ 131 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----NDRVEVRTGLALDS-LQQIENEKY 131 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHH-HHHHHHTTC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHH-HHHHHhcCC
Confidence 47799999999999999998665 479999999 9999999999988764 44577776544320 0011111 1
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|++... ......+++.+.++|+||
T Consensus 132 ~~fD~v~~d~~---~~~~~~~l~~~~~~L~pg 160 (223)
T 3duw_A 132 EPFDFIFIDAD---KQNNPAYFEWALKLSRPG 160 (223)
T ss_dssp CCCSEEEECSC---GGGHHHHHHHHHHTCCTT
T ss_pred CCcCEEEEcCC---cHHHHHHHHHHHHhcCCC
Confidence 57999998544 356788999999999998
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-11 Score=100.57 Aligned_cols=92 Identities=20% Similarity=0.120 Sum_probs=72.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..++.. .+|+++|+ +.+++.+++++..++ .++.+...++.+ ++. ..+||
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~-----~~~-~~~fD 98 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-------RHVDFWVQDMRE-----LEL-PEPVD 98 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCGGG-----CCC-SSCEE
T ss_pred CCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-------CceEEEEcChhh-----cCC-CCCcC
Confidence 679999999999999988744 89999999 999999999987654 245555544433 221 36899
Q ss_pred EEEEcC-ccCCC---CCHHHHHHHHHHHHhcC
Q 023457 185 VILASD-VVYHD---HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd-~ly~~---~~~~~ll~~l~~ll~~g 212 (282)
+|++.. ++++. .....+++.+.++|+||
T Consensus 99 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 130 (243)
T 3d2l_A 99 AITILCDSLNYLQTEADVKQTFDSAARLLTDG 130 (243)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHHHEEEE
T ss_pred EEEEeCCchhhcCCHHHHHHHHHHHHHhcCCC
Confidence 999974 77765 45678899999999998
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-11 Score=103.14 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=79.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..+..++... +.+|+++|+ +.+++.++++. .++.+...|+.+ ++ ...
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~-----~~-~~~ 94 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADLAT-----WK-PAQ 94 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCTTT-----CC-CSS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECChhh-----cC-ccC
Confidence 347799999999999999998665 579999999 99999998761 134555555443 22 356
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||+|+++.++++..+...+++.+.++|+|| |.+++..
T Consensus 95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg------G~l~~~~ 132 (259)
T 2p35_A 95 KADLLYANAVFQWVPDHLAVLSQLMDQLESG------GVLAVQM 132 (259)
T ss_dssp CEEEEEEESCGGGSTTHHHHHHHHGGGEEEE------EEEEEEE
T ss_pred CcCEEEEeCchhhCCCHHHHHHHHHHhcCCC------eEEEEEe
Confidence 8999999999999999999999999999998 5655544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=109.96 Aligned_cols=99 Identities=19% Similarity=0.274 Sum_probs=79.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..++++|||||||+|.+++.+++.+.++|+++|...+++.+++++..|+. ..++.+...++.+ +.. ..+
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~~~-~~~ 129 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNL-----DHIVEVIEGSVED-----ISL-PEK 129 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTC-----TTTEEEEESCGGG-----CCC-SSC
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCC-----CCeEEEEECchhh-----cCc-CCc
Confidence 35688999999999999999986655599999998889999999998874 4567777766544 111 268
Q ss_pred ccEEEEcCccCC---CCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYH---DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~---~~~~~~ll~~l~~ll~~g 212 (282)
||+|++..+.|. ....+.++..+.++|+||
T Consensus 130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkpg 162 (376)
T 3r0q_C 130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPT 162 (376)
T ss_dssp EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEE
T ss_pred ceEEEEcChhhcccchHHHHHHHHHHHhhCCCC
Confidence 999999665554 366888999999999998
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-11 Score=103.95 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=74.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
++++|||||||+|..++.+|... +++|+++|+ +.+++.+++|+..++. ..++.+...|..+ .++..
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~----~l~~~~~ 130 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----EHKIKLRLGPALD----TLHSLLN 130 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----TTTEEEEESCHHH----HHHHHHH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHH----HHHHHhh
Confidence 36799999999999999998655 479999999 9999999999998774 3567776644322 12221
Q ss_pred ---CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 ---GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ---~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|++... ......+++.+.++|+||
T Consensus 131 ~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpG 163 (242)
T 3r3h_A 131 EGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPK 163 (242)
T ss_dssp HHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEE
T ss_pred ccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCC
Confidence 468999998543 456778999999999998
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-10 Score=97.67 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc-hhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND-VAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~-~~~~~ 180 (282)
.++.+|||||||+|..++.++...+ .+|+++|+ +.+++.+++|+..+ .++.+...|... +.. .+. .
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~v~~~~~d~~~--~~~~~~~-~ 141 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--------ENIIPILGDANK--PQEYANI-V 141 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--------TTEEEEECCTTC--GGGGTTT-S
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--------CCeEEEECCCCC--ccccccc-C
Confidence 3578999999999999999987754 79999999 99999999886643 255555544433 111 222 2
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
..||+|+. ++ ........+++.+.++|+|| |.+++.
T Consensus 142 ~~~D~v~~-~~-~~~~~~~~~l~~~~~~Lkpg------G~l~i~ 177 (230)
T 1fbn_A 142 EKVDVIYE-DV-AQPNQAEILIKNAKWFLKKG------GYGMIA 177 (230)
T ss_dssp CCEEEEEE-CC-CSTTHHHHHHHHHHHHEEEE------EEEEEE
T ss_pred ccEEEEEE-ec-CChhHHHHHHHHHHHhCCCC------cEEEEE
Confidence 67999993 22 12233477899999999998 555554
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=98.83 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=74.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
++++|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++. ..++.+...|..+ .++..
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~----~l~~~~~ 133 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----DQRVTLREGPALQ----SLESLGE 133 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHH----HHHTCCS
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHH----HHHhcCC
Confidence 47799999999999999998654 479999999 9999999999998774 3467777654432 12222
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|++.. .......+++.+.++|+||
T Consensus 134 ~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpG 163 (248)
T 3tfw_A 134 CPAFDLIFIDA---DKPNNPHYLRWALRYSRPG 163 (248)
T ss_dssp CCCCSEEEECS---CGGGHHHHHHHHHHTCCTT
T ss_pred CCCeEEEEECC---chHHHHHHHHHHHHhcCCC
Confidence 24899999843 2456778999999999998
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.2e-11 Score=105.87 Aligned_cols=128 Identities=18% Similarity=0.049 Sum_probs=86.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---cC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV---VG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~---~~ 180 (282)
++.+|||||||+|..++.++.. +++|+++|+ +.+++.+++|+..|+.. ..++.+...|+.+ .+.. ..
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~----~~~v~~i~~D~~~----~l~~~~~~~ 223 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAMK----FIQREERRG 223 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHHH----HHHHHHHHT
T ss_pred CCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECcHHH----HHHHHHhcC
Confidence 3679999999999999999864 569999999 99999999999998741 1135555433322 1111 14
Q ss_pred CCccEEEEcCccCCC----------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-----hcC
Q 023457 181 REFDVILASDVVYHD----------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-----KLF 245 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~----------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-----~~f 245 (282)
.+||+|++..+.|.. ..+..+++.+.++|+|| |.+++.+.... ......|.+.+. .++
T Consensus 224 ~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkpg------G~lli~~~~~~-~~~~~~~~~~l~~a~~~~g~ 296 (332)
T 2igt_A 224 STYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK------ALGLVLTAYSI-RASFYSMHELMRETMRGAGG 296 (332)
T ss_dssp CCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT------CCEEEEEECCT-TSCHHHHHHHHHHHTTTSCS
T ss_pred CCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcC------cEEEEEECCCC-CCCHHHHHHHHHHHHHHcCC
Confidence 689999997664432 23678899999999998 56555444322 223344444443 366
Q ss_pred ceE
Q 023457 246 DVE 248 (282)
Q Consensus 246 ~ve 248 (282)
.++
T Consensus 297 ~v~ 299 (332)
T 2igt_A 297 VVA 299 (332)
T ss_dssp EEE
T ss_pred eEE
Confidence 665
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=102.26 Aligned_cols=100 Identities=14% Similarity=0.258 Sum_probs=77.1
Q ss_pred CCCCcEEEeCCCCCHH-HHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLV-GMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~-si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|.. ++.+|+..+++|+++|+ +++++.++++++..+. .++.+..-|. .+++ ..
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa-----~~l~--d~ 187 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDE-----TVID--GL 187 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCG-----GGGG--GC
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECch-----hhCC--CC
Confidence 4688999999999754 56666556789999999 9999999999987662 3566665332 2333 57
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||+|+++.. .++...+++.+.+.|+|| |.+++..
T Consensus 188 ~FDvV~~~a~---~~d~~~~l~el~r~LkPG------G~Lvv~~ 222 (298)
T 3fpf_A 188 EFDVLMVAAL---AEPKRRVFRNIHRYVDTE------TRIIYRT 222 (298)
T ss_dssp CCSEEEECTT---CSCHHHHHHHHHHHCCTT------CEEEEEE
T ss_pred CcCEEEECCC---ccCHHHHHHHHHHHcCCC------cEEEEEc
Confidence 8999998655 478889999999999999 6666544
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=97.42 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=76.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++|+..++. .++.+...|+.+. .....+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~-----~~~~~~ 143 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDL------HNVSTRHGDGWQG-----WQARAP 143 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGC-----CGGGCC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC------CceEEEECCcccC-----CccCCC
Confidence 35789999999999999999865 789999999 9999999999988763 2566666555431 112468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|+++.++++... .+.++|+|| |.+++.+.
T Consensus 144 ~D~i~~~~~~~~~~~------~~~~~L~pg------G~lv~~~~ 175 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT------ALMTQLDEG------GILVLPVG 175 (210)
T ss_dssp EEEEEESSBCSSCCT------HHHHTEEEE------EEEEEEEC
T ss_pred ccEEEEccchhhhhH------HHHHhcccC------cEEEEEEc
Confidence 999999988876553 578899998 56555443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-10 Score=97.21 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.++.. +.+|+++|+ +.+++.+++++..++. ++.+...|+.+ ++ ...+|
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~-----~~-~~~~f 106 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL-------KIEFLQGDVLE-----IA-FKNEF 106 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-------CCEEEESCGGG-----CC-CCSCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC-------ceEEEECChhh-----cc-cCCCc
Confidence 4679999999999999999854 689999999 9999999999877542 45555544433 11 13579
Q ss_pred cEEEEcC-ccC--CCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASD-VVY--HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd-~ly--~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++.. .+. .......+++.+.++|+||
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 138 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG 138 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCC
Confidence 9999753 222 2346788999999999998
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-10 Score=90.83 Aligned_cols=158 Identities=12% Similarity=0.075 Sum_probs=96.2
Q ss_pred ehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 75 WPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 75 W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
+.+...+.+++.... ...++.+|||+|||+|..+..++... +.+|+++|+ + ++..
T Consensus 4 ~r~~~~l~~~~~~~~------------~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------- 61 (180)
T 1ej0_A 4 SRAWFKLDEIQQSDK------------LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------- 61 (180)
T ss_dssp CHHHHHHHHHHHHHC------------CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------
T ss_pred hhHHHHHHHHHHHhC------------CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------
Confidence 445566677765544 12357799999999999999998774 379999999 6 5321
Q ss_pred cccccCCCcEEEEEEEeCCCCc-cchh--hcCCCccEEEEcCccCCCCCH-----------HHHHHHHHHHHhcCCCCCC
Q 023457 152 GLISLRGGSVHVAPLRWGEAEA-NDVA--VVGREFDVILASDVVYHDHLF-----------DPLLVTLRLFLNSGEPEPK 217 (282)
Q Consensus 152 ~~~~~~~~~v~~~~ld~~~~~~-~~~~--~~~~~fD~Ii~sd~ly~~~~~-----------~~ll~~l~~ll~~g~~~~~ 217 (282)
.++.+...|+.+... ..+. ....+||+|+++.+++..... ..+++.+.++|++|
T Consensus 62 -------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g----- 129 (180)
T 1ej0_A 62 -------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG----- 129 (180)
T ss_dssp -------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-----
T ss_pred -------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-----
Confidence 245555555443100 0000 224689999998888776655 78999999999998
Q ss_pred CceEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeeec
Q 023457 218 KKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 218 ~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
|.+++.... ......+...+...|....+... ..........|.+.++.
T Consensus 130 -G~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 178 (180)
T 1ej0_A 130 -GSFVVKVFQ---GEGFDEYLREIRSLFTKVKVRKP--DSSRARSREVYIVATGR 178 (180)
T ss_dssp -EEEEEEEES---STTHHHHHHHHHHHEEEEEEECC--TTSCTTCCEEEEEEEEE
T ss_pred -cEEEEEEec---CCcHHHHHHHHHHhhhhEEeecC--CcccccCceEEEEEccC
Confidence 555443322 22345566666655544333322 22222233455554443
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-11 Score=107.40 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=77.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
++++|||||||+|.+++.+++.+..+|+++|...+++.+++++..|+. .+++.+...+..+ +.....+||
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~-----~~~~~~~~D 107 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----SDKITLLRGKLED-----VHLPFPKVD 107 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----TTTEEEEESCTTT-----SCCSSSCEE
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCC-----CCCEEEEECchhh-----ccCCCCccc
Confidence 477999999999999999986644699999995589999999998874 4567777655444 222246899
Q ss_pred EEEEcCc---cCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDV---VYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~---ly~~~~~~~ll~~l~~ll~~g 212 (282)
+|++..+ +.+......++..+.++|+||
T Consensus 108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg 138 (328)
T 1g6q_1 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred EEEEeCchhhcccHHHHHHHHHHHHhhcCCC
Confidence 9999754 335667889999999999998
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=97.05 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=72.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~ 180 (282)
.+.+|||||||+|..++.+|... +.+|+++|+ +.++..+++|+..++. .++.+...|..+ +. ...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~-----l~~~~~~ 106 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADT-----LTDVFEP 106 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGG-----HHHHCCT
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHH-----HHhhcCc
Confidence 36789999999999999998765 479999999 9999999999988763 346665544332 22 124
Q ss_pred CCccEEEEcCccCCCC--------CHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDH--------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~g 212 (282)
..||.|++..+..+.. ....+++.+.++|+||
T Consensus 107 ~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg 146 (213)
T 2fca_A 107 GEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG 146 (213)
T ss_dssp TSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred CCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCC
Confidence 6799998753322111 1478999999999998
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-11 Score=99.09 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=74.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|..++.++... +.+|+++|+ +.+++.+++|+..++. .++.+...++.+.. ...+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~------~~~~ 132 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFP------SEPP 132 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSC------CCSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEecchhhCC------ccCC
Confidence 47799999999999999998664 479999999 9999999999988763 23777776665421 1357
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++..+ .....+++.+.++|+||
T Consensus 133 ~D~i~~~~~----~~~~~~l~~~~~~L~~g 158 (207)
T 1jsx_A 133 FDGVISRAF----ASLNDMVSWCHHLPGEQ 158 (207)
T ss_dssp EEEEECSCS----SSHHHHHHHHTTSEEEE
T ss_pred cCEEEEecc----CCHHHHHHHHHHhcCCC
Confidence 999997542 56789999999999998
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-12 Score=107.10 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch--hhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV--AVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~--~~~~~ 181 (282)
++.+|||||||+|..+..++.....+|+++|+ +.+++.++++...++ .++.+...++.+ + +....
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~~-----~~~~~~~~ 127 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWED-----VAPTLPDG 127 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHH-----HGGGSCTT
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-------CCeEEEecCHHH-----hhcccCCC
Confidence 37799999999999999997444459999999 999999999876543 245555544433 2 23357
Q ss_pred CccEEEE-cCccC----CCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILA-SDVVY----HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~-sd~ly----~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|++ ...+. +....+.+++.+.++|+||
T Consensus 128 ~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg 163 (236)
T 1zx0_A 128 HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp CEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred ceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCC
Confidence 8999999 43321 2223457799999999998
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-10 Score=93.80 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=81.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||+|||+|..++.++.....+|+++|+ +.+++.++.|+..++. ++.+...|+.+ + ...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~-----~---~~~ 112 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------KFKVFIGDVSE-----F---NSR 112 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------SEEEEESCGGG-----C---CCC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECchHH-----c---CCC
Confidence 357899999999999999998664468999999 9999999999887652 45555544332 2 348
Q ss_pred ccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 183 FDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 183 fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
||+|+++.+++.. .....+++.+.+++ + .+++++ .........+.+.+. .+|.++.+.
T Consensus 113 ~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~-------~~~~~~--~~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 113 VDIVIMNPPFGSQRKHADRPFLLKAFEIS--D-------VVYSIH--LAKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp CSEEEECCCCSSSSTTTTHHHHHHHHHHC--S-------EEEEEE--ECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCEEEEcCCCccccCCchHHHHHHHHHhc--C-------cEEEEE--eCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 9999998776543 24456677777666 4 433333 112222333444443 477776543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=104.74 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=76.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++. .+.+|+++|+ +.+++.++.+. ++.+...|+.+ ++...++|
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------------~~~~~~~d~~~-----~~~~~~~f 95 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP------------QVEWFTGYAEN-----LALPDKSV 95 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT------------TEEEECCCTTS-----CCSCTTCB
T ss_pred CCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc------------CCEEEECchhh-----CCCCCCCE
Confidence 478999999999999999984 5689999999 88877665421 45555544433 33335789
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
|+|++..++++..+...+++.+.++|+ | |.++++..
T Consensus 96 D~v~~~~~l~~~~~~~~~l~~~~~~Lk-g------G~~~~~~~ 131 (261)
T 3ege_A 96 DGVISILAIHHFSHLEKSFQEMQRIIR-D------GTIVLLTF 131 (261)
T ss_dssp SEEEEESCGGGCSSHHHHHHHHHHHBC-S------SCEEEEEE
T ss_pred eEEEEcchHhhccCHHHHHHHHHHHhC-C------cEEEEEEc
Confidence 999999999999999999999999999 8 66666554
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-10 Score=98.73 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=83.0
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
.-.++..++..+. ..++.+|||+|||+|..++.++... ..+|+++|+ +.+++.+++|+..+
T Consensus 103 qd~~s~l~~~~l~----------------~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~ 166 (315)
T 1ixk_A 103 QEASSMYPPVALD----------------PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL 166 (315)
T ss_dssp CCHHHHHHHHHHC----------------CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHhC----------------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh
Confidence 3456666666662 2347899999999999999998765 379999999 99999999999987
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCc------cCCCCC----------------HHHHHHHHHHH
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDV------VYHDHL----------------FDPLLVTLRLF 208 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~------ly~~~~----------------~~~ll~~l~~l 208 (282)
+. .++.+...|.. .+......||+|++..+ +...++ ...+++.+.++
T Consensus 167 g~------~~v~~~~~D~~-----~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~ 235 (315)
T 1ixk_A 167 GV------LNVILFHSSSL-----HIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV 235 (315)
T ss_dssp TC------CSEEEESSCGG-----GGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CeEEEEECChh-----hcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 74 24555543332 22223568999998432 221111 15889999999
Q ss_pred HhcCCCCCCCceEEEEEE
Q 023457 209 LNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 209 l~~g~~~~~~g~~~il~~ 226 (282)
|+|| |.+++..+
T Consensus 236 LkpG------G~lv~stc 247 (315)
T 1ixk_A 236 LKPG------GILVYSTC 247 (315)
T ss_dssp EEEE------EEEEEEES
T ss_pred CCCC------CEEEEEeC
Confidence 9998 56555443
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-10 Score=100.26 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=85.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|..++.++... ..+|+++|+ +.+++.+++|+..++. .++.+...|+.. .+ ...+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~v~~~~~d~~~----~~--~~~~ 176 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFS----AL--AGQQ 176 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTG----GG--TTCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEcchhh----hc--ccCC
Confidence 36799999999999999998655 479999999 9999999999988763 256666655543 11 1468
Q ss_pred ccEEEEcCccCCC-------------------------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHH
Q 023457 183 FDVILASDVVYHD-------------------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVF 237 (282)
Q Consensus 183 fD~Ii~sd~ly~~-------------------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f 237 (282)
||+|+++.+.... ..+..+++.+.++|+|| |.+++. .. +.....+
T Consensus 177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg------G~l~~~-~~---~~~~~~~ 246 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG------GFLLLE-HG---WQQGEAV 246 (276)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE------EEEEEE-CC---SSCHHHH
T ss_pred ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC------CEEEEE-EC---chHHHHH
Confidence 9999998544322 23467888889999998 444443 22 2223344
Q ss_pred HHHHh-hcCceEEEc
Q 023457 238 FKKAK-KLFDVETIH 251 (282)
Q Consensus 238 ~~~~~-~~f~ve~v~ 251 (282)
.+.++ .+|....+.
T Consensus 247 ~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 247 RQAFILAGYHDVETC 261 (276)
T ss_dssp HHHHHHTTCTTCCEE
T ss_pred HHHHHHCCCcEEEEE
Confidence 44443 478644333
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.7e-10 Score=93.69 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=70.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..+..++... ..+|+++|+ +.+++.+.+++..+ .++.+...|..+ ...++...
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------~~v~~~~~d~~~--~~~~~~~~ 145 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------TNIIPVIEDARH--PHKYRMLI 145 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------TTEEEECSCTTC--GGGGGGGC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------CCeEEEEcccCC--hhhhcccC
Confidence 457899999999999999999775 379999999 88888888777764 245555444333 11123335
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..||+|++..+ .......++..+.++|+||
T Consensus 146 ~~~D~V~~~~~--~~~~~~~~~~~~~~~Lkpg 175 (233)
T 2ipx_A 146 AMVDVIFADVA--QPDQTRIVALNAHTFLRNG 175 (233)
T ss_dssp CCEEEEEECCC--CTTHHHHHHHHHHHHEEEE
T ss_pred CcEEEEEEcCC--CccHHHHHHHHHHHHcCCC
Confidence 68999998544 3333456788899999998
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-10 Score=100.87 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=79.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|..++.++... ..+|+++|+ +.+++.++.|+..++. . ++.+...|+.+ ++...
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~-----~-~i~~~~~D~~~-----~~~~~ 270 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL-----S-WIRFLRADARH-----LPRFF 270 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC-----T-TCEEEECCGGG-----GGGTC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC-----C-ceEEEeCChhh-----Ccccc
Confidence 357799999999999999999765 279999999 9999999999998774 2 56666655443 33334
Q ss_pred CCccEEEEcCccCCCC--------CHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 181 REFDVILASDVVYHDH--------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
..||+|+++.+..... .+..+++.+.++|+|| |.++++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkpg------G~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPG------GRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTT------CEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCC------cEEEEEeC
Confidence 5689999976643211 1367889999999998 67666543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=100.27 Aligned_cols=121 Identities=10% Similarity=-0.036 Sum_probs=82.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|.+++.+++.+. .+|+++|+ +.+++.+++|+..|++ .+++.+...|..+ .+. ...+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~I~v~~gD~l~----~~~-~~~~ 90 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----TEQIDVRKGNGLA----VIE-KKDA 90 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGG----GCC-GGGC
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEecchhh----ccC-cccc
Confidence 478999999999999999986653 58999999 9999999999999985 4567777655433 111 1125
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCce
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~v 247 (282)
||+|+.+.+.- ..+..++......|+++ ..+++.. .......+.++. +.||.+
T Consensus 91 ~D~IviagmGg--~lI~~IL~~~~~~L~~~-------~~lIlq~-~~~~~~lr~~L~--~~Gf~i 143 (244)
T 3gnl_A 91 IDTIVIAGMGG--TLIRTILEEGAAKLAGV-------TKLILQP-NIAAWQLREWSE--QNNWLI 143 (244)
T ss_dssp CCEEEEEEECH--HHHHHHHHHTGGGGTTC-------CEEEEEE-SSCHHHHHHHHH--HHTEEE
T ss_pred ccEEEEeCCch--HHHHHHHHHHHHHhCCC-------CEEEEEc-CCChHHHHHHHH--HCCCEE
Confidence 99988764432 23566777777777665 4445444 333333333333 358877
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-11 Score=99.11 Aligned_cols=97 Identities=21% Similarity=0.228 Sum_probs=70.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.++.. +..|+++|+ +.+++.+++|+..++. ++.+...|+.+. .........+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~-~~~~~~~~~~~ 111 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL-------GARVVALPVEVF-LPEAKAQGERF 111 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC-------CCEEECSCHHHH-HHHHHHTTCCE
T ss_pred CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC-------ceEEEeccHHHH-HHhhhccCCce
Confidence 4779999999999999999855 566999999 9999999999988752 344444333220 00111112479
Q ss_pred cEEEEcCccCCCCCHHHHHHHHH--HHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLR--LFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~--~ll~~g 212 (282)
|+|+++.+++ ...+.+++.+. ++|+|+
T Consensus 112 D~i~~~~~~~--~~~~~~~~~~~~~~~L~~g 140 (171)
T 1ws6_A 112 TVAFMAPPYA--MDLAALFGELLASGLVEAG 140 (171)
T ss_dssp EEEEECCCTT--SCTTHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCc--hhHHHHHHHHHhhcccCCC
Confidence 9999987754 66777888887 889998
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.4e-11 Score=101.09 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=84.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|.+++.+|+.+. .+|+++|+ +.+++.+++|+..|+. .+++.+...|+.. .++. ..+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~i~~~~~d~l~----~l~~-~~~ 84 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----KEKIQVRLANGLA----AFEE-TDQ 84 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGG----GCCG-GGC
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECchhh----hccc-CcC
Confidence 477999999999999999996653 58999999 9999999999999985 4568877755533 1111 126
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVET 249 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~ 249 (282)
||+|+.+.+-- ..+..++......|+++ +.+++.. .........++. +.||.+..
T Consensus 85 ~D~IviaG~Gg--~~i~~Il~~~~~~L~~~-------~~lVlq~-~~~~~~vr~~L~--~~Gf~i~~ 139 (225)
T 3kr9_A 85 VSVITIAGMGG--RLIARILEEGLGKLANV-------ERLILQP-NNREDDLRIWLQ--DHGFQIVA 139 (225)
T ss_dssp CCEEEEEEECH--HHHHHHHHHTGGGCTTC-------CEEEEEE-SSCHHHHHHHHH--HTTEEEEE
T ss_pred CCEEEEcCCCh--HHHHHHHHHHHHHhCCC-------CEEEEEC-CCCHHHHHHHHH--HCCCEEEE
Confidence 99998765431 23567777777778776 4344443 333222333332 35787753
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=98.13 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++... .+|+++|+ +.+++.++++.. ++.+...|+.+ ++. ..+|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~d~~~-----~~~-~~~~ 101 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRLP-----------DATLHQGDMRD-----FRL-GRKF 101 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHCT-----------TCEEEECCTTT-----CCC-SSCE
T ss_pred CCCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhCC-----------CCEEEECCHHH-----ccc-CCCC
Confidence 36799999999999999998665 59999999 999999887531 34555544443 121 4689
Q ss_pred cEEEE-cCccCCC---CCHHHHHHHHHHHHhcC
Q 023457 184 DVILA-SDVVYHD---HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~-sd~ly~~---~~~~~ll~~l~~ll~~g 212 (282)
|+|++ .+++++. .....+++.+.++|+||
T Consensus 102 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 134 (239)
T 3bxo_A 102 SAVVSMFSSVGYLKTTEELGAAVASFAEHLEPG 134 (239)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEE
T ss_pred cEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCC
Confidence 99995 5577765 45678999999999998
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=99.36 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=70.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..+..+ +. +|+++|+ +.+++.++++. .++.+...+..+ ++....+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~-----~~~~~~~ 95 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEA-----LPFPGES 95 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTS-----CCSCSSC
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEccccc-----CCCCCCc
Confidence 5789999999999988766 55 9999999 99999998765 123344333322 2333568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++..+...+++.+.++|+||
T Consensus 96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 125 (211)
T 2gs9_A 96 FDVVLLFTTLEFVEDVERVLLEARRVLRPG 125 (211)
T ss_dssp EEEEEEESCTTTCSCHHHHHHHHHHHEEEE
T ss_pred EEEEEEcChhhhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-10 Score=95.38 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=84.2
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..|....+....+.... ..++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++++..
T Consensus 58 ~~~~~~~~~~~~~~~~~-------------~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 124 (215)
T 2yxe_A 58 QTISAIHMVGMMCELLD-------------LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124 (215)
T ss_dssp EEECCHHHHHHHHHHTT-------------CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH
T ss_pred cEeCcHHHHHHHHHhhC-------------CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 45655555555554332 23478999999999999999987775 79999999 9999999999887
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
++. .++.+...+... .+. ...+||+|+++.++++.. +.+.++|+|| |.+++.+.
T Consensus 125 ~~~------~~v~~~~~d~~~----~~~-~~~~fD~v~~~~~~~~~~------~~~~~~L~pg------G~lv~~~~ 178 (215)
T 2yxe_A 125 LGY------DNVIVIVGDGTL----GYE-PLAPYDRIYTTAAGPKIP------EPLIRQLKDG------GKLLMPVG 178 (215)
T ss_dssp HTC------TTEEEEESCGGG----CCG-GGCCEEEEEESSBBSSCC------HHHHHTEEEE------EEEEEEES
T ss_pred cCC------CCeEEEECCccc----CCC-CCCCeeEEEECCchHHHH------HHHHHHcCCC------cEEEEEEC
Confidence 653 246665544422 111 135799999999887654 4788899998 56555543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.9e-11 Score=99.31 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=73.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCC-CcEEEEEEEeCCCCccchhhc-C
Q 023457 106 QLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRG-GSVHVAPLRWGEAEANDVAVV-G 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~-~~v~~~~ld~~~~~~~~~~~~-~ 180 (282)
+.+|||||||+|..++.+|... +++|+++|+ +.+++.+++|+..++. . .++.+...|..+ .++.. .
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~~i~~~~gda~~----~l~~~~~ 127 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----SPSRVRFLLSRPLD----VMSRLAN 127 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHH----HGGGSCT
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcCcEEEEEcCHHH----HHHHhcC
Confidence 4499999999999999998765 479999999 9999999999998774 3 466666533222 12222 4
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|++... ......+++.+.++|+||
T Consensus 128 ~~fD~V~~d~~---~~~~~~~l~~~~~~LkpG 156 (221)
T 3dr5_A 128 DSYQLVFGQVS---PMDLKALVDAAWPLLRRG 156 (221)
T ss_dssp TCEEEEEECCC---TTTHHHHHHHHHHHEEEE
T ss_pred CCcCeEEEcCc---HHHHHHHHHHHHHHcCCC
Confidence 68999998532 356778999999999998
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=99.51 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~ 181 (282)
++++|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++. ..++.+...|..+ .++ ....
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~~~~~~~~ 141 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----ENQVRIIEGNALE----QFENVNDK 141 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGG----CHHHHTTS
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHH----HHHhhccC
Confidence 46799999999999999998643 579999999 9999999999988764 3467777655443 223 2357
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|++.. ....+..+++.+.++|+||
T Consensus 142 ~fD~V~~~~---~~~~~~~~l~~~~~~Lkpg 169 (232)
T 3ntv_A 142 VYDMIFIDA---AKAQSKKFFEIYTPLLKHQ 169 (232)
T ss_dssp CEEEEEEET---TSSSHHHHHHHHGGGEEEE
T ss_pred CccEEEEcC---cHHHHHHHHHHHHHhcCCC
Confidence 899999753 2466888999999999998
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-10 Score=101.14 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=73.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|.+|||+|||+|..++.+|+.++++|+++|+ +.+++.+++|+..|++ .+++.+.+.|..+ +. ....|
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----~~~v~~~~~D~~~-----~~-~~~~~ 193 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRD-----FP-GENIA 193 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTT-----CC-CCSCE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCcHHH-----hc-cccCC
Confidence 48899999999999999999776689999999 9999999999999996 5677777655433 21 14679
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|.|+++.+.+.. .++..+.+++++|
T Consensus 194 D~Vi~~~p~~~~----~~l~~a~~~lk~g 218 (278)
T 3k6r_A 194 DRILMGYVVRTH----EFIPKALSIAKDG 218 (278)
T ss_dssp EEEEECCCSSGG----GGHHHHHHHEEEE
T ss_pred CEEEECCCCcHH----HHHHHHHHHcCCC
Confidence 999998665433 4556666788987
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=102.51 Aligned_cols=127 Identities=10% Similarity=-0.010 Sum_probs=79.5
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
-|-.+..+.+|+..... ...++.+|||||||+|.....++...+.+|+++|+ +.|++.+++.....+.
T Consensus 28 n~vks~li~~~~~~~~~-----------~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~ 96 (302)
T 2vdw_A 28 NYVKTLLISMYCSKTFL-----------DDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS 96 (302)
T ss_dssp HHHHHHHHHHHTCTTTS-----------SCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhhhh-----------ccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccc
Confidence 46666666665533211 01247899999999997655555455679999999 9999999987765431
Q ss_pred ccccCCCcEEEEEEEeCCCCc--cchh--hcCCCccEEEEcCccCC---CCCHHHHHHHHHHHHhcC
Q 023457 153 LISLRGGSVHVAPLRWGEAEA--NDVA--VVGREFDVILASDVVYH---DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~--~~~~--~~~~~fD~Ii~sd~ly~---~~~~~~ll~~l~~ll~~g 212 (282)
......-.+.+...+... +. ..+. ...++||+|++..++++ ......+++.+.++|+||
T Consensus 97 ~~~~~~~~~~f~~~d~~~-d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG 162 (302)
T 2vdw_A 97 GIKTKYYKFDYIQETIRS-DTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG 162 (302)
T ss_dssp ----CCCEEEEEECCTTS-SSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred cccccccccchhhhhccc-chhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence 100000012333322211 11 1121 12468999999888753 356789999999999998
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-10 Score=94.38 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=74.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC-
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG- 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~- 180 (282)
++++|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++. ..++.+...+..+ .++...
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~~~~~~~ 134 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----SDKIGLRLSPAKD----TLAELIH 134 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHH----HHHHHHT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeCCHHH----HHHHhhh
Confidence 36799999999999999998654 479999999 9999999999988774 3457776654432 111111
Q ss_pred ----CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 ----REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ----~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|++... ......+++.+.++|+||
T Consensus 135 ~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pg 167 (225)
T 3tr6_A 135 AGQAWQYDLIYIDAD---KANTDLYYEESLKLLREG 167 (225)
T ss_dssp TTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEE
T ss_pred ccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCC
Confidence 68999996432 356788999999999998
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-11 Score=100.61 Aligned_cols=123 Identities=13% Similarity=0.018 Sum_probs=84.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|.+++.+++.+. .+|+++|+ +.+++.+++|+..|++ .+++.+...|+.+. + ....+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----~~~I~~~~gD~l~~----~-~~~~~ 90 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----TSKIDVRLANGLSA----F-EEADN 90 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGG----C-CGGGC
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhc----c-ccccc
Confidence 578999999999999999986653 58999999 9999999999999985 45788877554431 1 11236
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVET 249 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~ 249 (282)
||+|+.+.+.- ..+..++......++++ +.+++.+ ..+....+.++ .+.+|.+..
T Consensus 91 ~D~IviaGmGg--~lI~~IL~~~~~~l~~~-------~~lIlqp-~~~~~~lr~~L--~~~Gf~i~~ 145 (230)
T 3lec_A 91 IDTITICGMGG--RLIADILNNDIDKLQHV-------KTLVLQP-NNREDDLRKWL--AANDFEIVA 145 (230)
T ss_dssp CCEEEEEEECH--HHHHHHHHHTGGGGTTC-------CEEEEEE-SSCHHHHHHHH--HHTTEEEEE
T ss_pred cCEEEEeCCch--HHHHHHHHHHHHHhCcC-------CEEEEEC-CCChHHHHHHH--HHCCCEEEE
Confidence 99988765542 34566777777777765 4445544 33322233333 235787753
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-10 Score=95.22 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=69.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..+|.+|||||||+|..+..+|...+ ++|+++|+ +.+++.+....... .++.+...|... +......
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------~nv~~i~~Da~~--~~~~~~~ 143 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------PNIFPLLADARF--PQSYKSV 143 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------TTEEEEECCTTC--GGGTTTT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCeEEEEccccc--chhhhcc
Confidence 45689999999999999999986653 69999999 88876554443321 245555544332 1111122
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
...||+|++.-.. ......+...+.++|+|| |.+++.+
T Consensus 144 ~~~~D~I~~d~a~--~~~~~il~~~~~~~LkpG------G~lvisi 181 (232)
T 3id6_C 144 VENVDVLYVDIAQ--PDQTDIAIYNAKFFLKVN------GDMLLVI 181 (232)
T ss_dssp CCCEEEEEECCCC--TTHHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred ccceEEEEecCCC--hhHHHHHHHHHHHhCCCC------eEEEEEE
Confidence 4689999986433 333445566677799998 6666553
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-10 Score=113.29 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=92.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++|||+|||||..++.++..++.+|+++|+ +.+++.+++|+..|+.. ..++.+...|..+ .+.....+|
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~~----~l~~~~~~f 610 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCLA----WLREANEQF 610 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHHH----HHHHCCCCE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHH----HHHhcCCCc
Confidence 37899999999999999998655567999999 99999999999999852 2467766644332 122235689
Q ss_pred cEEEEcCccCC-----------CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEcc
Q 023457 184 DVILASDVVYH-----------DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHA 252 (282)
Q Consensus 184 D~Ii~sd~ly~-----------~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~ 252 (282)
|+|++..+.+. ...+..++..+.++|+|| |. ++++...+........+.. .+|+++.+..
T Consensus 611 D~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkpg------G~-L~~s~~~~~~~~~~~~l~~--~g~~~~~i~~ 681 (703)
T 3v97_A 611 DLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAG------GT-IMFSNNKRGFRMDLDGLAK--LGLKAQEITQ 681 (703)
T ss_dssp EEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEE------EE-EEEEECCTTCCCCHHHHHH--TTEEEEECTT
T ss_pred cEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCC------cE-EEEEECCcccccCHHHHHH--cCCceeeeee
Confidence 99999765442 234677899999999998 44 4455544444444433332 3566666654
Q ss_pred c
Q 023457 253 D 253 (282)
Q Consensus 253 ~ 253 (282)
.
T Consensus 682 ~ 682 (703)
T 3v97_A 682 K 682 (703)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=99.95 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=85.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.++.+|||+|||+|..++.++... +.+|+++|+ +.+++.+++|+..+ +. .++.+...|+.+ .+ .
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------~~v~~~~~d~~~----~~--~ 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------GNVRTSRSDIAD----FI--S 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------TTEEEECSCTTT----CC--C
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------CcEEEEECchhc----cC--c
Confidence 457899999999999999998663 579999999 99999999999876 52 356666555443 11 2
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEE
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETI 250 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v 250 (282)
...||+|++ +......+++.+.++|+|| |.+++... .......+.+.+. .+|....+
T Consensus 177 ~~~fD~Vi~-----~~~~~~~~l~~~~~~Lkpg------G~l~i~~~---~~~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 177 DQMYDAVIA-----DIPDPWNHVQKIASMMKPG------SVATFYLP---NFDQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp SCCEEEEEE-----CCSCGGGSHHHHHHTEEEE------EEEEEEES---SHHHHHHHHHHSGGGTEEEEEE
T ss_pred CCCccEEEE-----cCcCHHHHHHHHHHHcCCC------CEEEEEeC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 357999998 3346678899999999998 55544432 2223345555554 47765444
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=92.61 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=73.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|..++.++...+ .+|+++|+ +.+++.+++++..+ .++.+...|... ...+....
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------~~v~~~~~d~~~--~~~~~~~~ 141 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------RNIVPILGDATK--PEEYRALV 141 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------TTEEEEECCTTC--GGGGTTTC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------CCCEEEEccCCC--cchhhccc
Confidence 4578999999999999999987753 79999999 99999998887653 256666655443 11111123
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
..||+|++..+ .......++..+.++|+|| |.+++.
T Consensus 142 ~~~D~v~~~~~--~~~~~~~~l~~~~~~Lkpg------G~l~~~ 177 (227)
T 1g8a_A 142 PKVDVIFEDVA--QPTQAKILIDNAEVYLKRG------GYGMIA 177 (227)
T ss_dssp CCEEEEEECCC--STTHHHHHHHHHHHHEEEE------EEEEEE
T ss_pred CCceEEEECCC--CHhHHHHHHHHHHHhcCCC------CEEEEE
Confidence 57999997544 2223345599999999998 565555
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=97.56 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=74.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++.+.. .+...+..+. ..+....+|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~~-------------~~~~~d~~~~---~~~~~~~~f 94 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKLD-------------HVVLGDIETM---DMPYEEEQF 94 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTSS-------------EEEESCTTTC---CCCSCTTCE
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC-------------cEEEcchhhc---CCCCCCCcc
Confidence 4779999999999999999865 689999999 889888875321 2333333221 112224689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++++..+...+++.+.++|+|| |.+++..
T Consensus 95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~g------G~l~~~~ 130 (230)
T 3cc8_A 95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQN------GVILASI 130 (230)
T ss_dssp EEEEEESCGGGSSCHHHHHHHTGGGEEEE------EEEEEEE
T ss_pred CEEEECChhhhcCCHHHHHHHHHHHcCCC------CEEEEEe
Confidence 99999999999999999999999999998 5555543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=103.87 Aligned_cols=108 Identities=16% Similarity=0.002 Sum_probs=76.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc-cCCCcEEEEEEEeCCCCcc-chhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS-LRGGSVHVAPLRWGEAEAN-DVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~-~~~~~v~~~~ld~~~~~~~-~~~~~~~ 181 (282)
++.+|||||||+|..+..++...+.+|+++|+ +.+++.++++...+..... ....++.+...|....... .+.....
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 46799999999999999888655679999999 9999999998865421000 0022566666555442100 1111234
Q ss_pred CccEEEEcCccCCC----CCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHD----HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~----~~~~~ll~~l~~ll~~g 212 (282)
+||+|+++.++++. .....+++.+.++|+||
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 148 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC
Confidence 89999999999765 34578999999999998
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.6e-11 Score=100.28 Aligned_cols=114 Identities=15% Similarity=0.136 Sum_probs=79.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~ 182 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++. .++.+...|+.+ .++.. ..+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~----~~~~~~~~~ 111 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANA-----------PHADVYEWNGKG----ELPAGLGAP 111 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCS----SCCTTCCCC
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhC-----------CCceEEEcchhh----ccCCcCCCC
Confidence 4779999999999999999854 789999999 99999998871 145666666643 22223 468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETI 250 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v 250 (282)
||+|+++ .....+++.+.++|+|| |.++ .. ........+...+. .||.+..+
T Consensus 112 fD~v~~~------~~~~~~l~~~~~~Lkpg------G~l~-~~---~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 112 FGLIVSR------RGPTSVILRLPELAAPD------AHFL-YV---GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp EEEEEEE------SCCSGGGGGHHHHEEEE------EEEE-EE---ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred EEEEEeC------CCHHHHHHHHHHHcCCC------cEEE-Ee---CCcCCHHHHHHHHHHCCCeEEEE
Confidence 9999997 35667889999999998 4444 22 22223344444444 47766544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-10 Score=101.18 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=78.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..+..++... +.+|+++|++.+++.+++++..++. ..++.+...|+.+. + ....|
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-----~-~~~~~ 233 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGV-----ASRYHTIAGSAFEV-----D-YGNDY 233 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTC-----GGGEEEEESCTTTS-----C-CCSCE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----CcceEEEecccccC-----C-CCCCC
Confidence 46799999999999999998765 4699999999899999999887653 34678877666541 1 12359
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g 212 (282)
|+|++..++++. +....+++.+.++|+||
T Consensus 234 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg 264 (335)
T 2r3s_A 234 DLVLLPNFLHHFDVATCEQLLRKIKTALAVE 264 (335)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cEEEEcchhccCCHHHHHHHHHHHHHhCCCC
Confidence 999999999876 44579999999999998
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=104.72 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=76.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.++++|||||||+|.+++.+++....+|+++|...++..+++++..|+. ..++.+...++.+. . ...+|
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l-----~~~v~~~~~d~~~~-----~-~~~~~ 117 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----TDRIVVIPGKVEEV-----S-LPEQV 117 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----TTTEEEEESCTTTC-----C-CSSCE
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcchhhC-----C-CCCce
Confidence 4688999999999999999986655699999994488999999988874 45677777665541 1 13579
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g 212 (282)
|+|++..+.++. +.....+..+.++|+||
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkpg 148 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKPS 148 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEEE
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCCC
Confidence 999998887753 45667777888999998
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-10 Score=101.87 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=83.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..+++..+ .+++++|++.+++.+++++...+. ..++.+...|+.+ .+ ...|
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l-----~~~v~~~~~d~~~----~~---p~~~ 269 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGL-----ADRCEILPGDFFE----TI---PDGA 269 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----TTTEEEEECCTTT----CC---CSSC
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCc-----CCceEEeccCCCC----CC---CCCc
Confidence 467999999999999999987654 699999998899999999887653 4578888877653 11 2279
Q ss_pred cEEEEcCccCCCCCHH--HHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFD--PLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~--~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|++..++++..+.. .+++.+.++|+|| |.++++-
T Consensus 270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pg------G~l~i~e 307 (369)
T 3gwz_A 270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPD------SRLLVID 307 (369)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHTTCCTT------CEEEEEE
T ss_pred eEEEhhhhhccCCHHHHHHHHHHHHHHcCCC------CEEEEEE
Confidence 9999999998776654 7999999999998 5655544
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-10 Score=98.95 Aligned_cols=92 Identities=16% Similarity=0.078 Sum_probs=72.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|..++.+|+.. +.+|+++|+ +.+++.+++|+..|+. .++.+...|..+ .+ ....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~~~d~~~-----~~-~~~~ 186 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------NNVIPILADNRD-----VE-LKDV 186 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------SSEEEEESCGGG-----CC-CTTC
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEECChHH-----cC-ccCC
Confidence 47899999999999999999764 459999999 9999999999999874 245555544433 21 1458
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++..+. ....++..+.++|+|+
T Consensus 187 ~D~Vi~d~p~----~~~~~l~~~~~~Lkpg 212 (272)
T 3a27_A 187 ADRVIMGYVH----KTHKFLDKTFEFLKDR 212 (272)
T ss_dssp EEEEEECCCS----SGGGGHHHHHHHEEEE
T ss_pred ceEEEECCcc----cHHHHHHHHHHHcCCC
Confidence 9999997653 5667888888999998
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=99.09 Aligned_cols=121 Identities=13% Similarity=0.038 Sum_probs=86.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|..++.++... +.+|+++|+ +.+++.+++|+..++. .+++.+...|+.+. ...
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~------~~~ 160 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DDRVTIKLKDIYEG------IEE 160 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----TTTEEEECSCGGGC------CCC
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----CCceEEEECchhhc------cCC
Confidence 458899999999999999998763 579999999 9999999999998774 34577776555431 124
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hc--CceEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KL--FDVET 249 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~--f~ve~ 249 (282)
.+||+|++. ......+++.+.++|+|| |.+++... .......+.+.++ .+ |....
T Consensus 161 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~g------G~l~~~~~---~~~~~~~~~~~l~~~g~~f~~~~ 218 (255)
T 3mb5_A 161 ENVDHVILD-----LPQPERVVEHAAKALKPG------GFFVAYTP---CSNQVMRLHEKLREFKDYFMKPR 218 (255)
T ss_dssp CSEEEEEEC-----SSCGGGGHHHHHHHEEEE------EEEEEEES---SHHHHHHHHHHHHHTGGGBSCCE
T ss_pred CCcCEEEEC-----CCCHHHHHHHHHHHcCCC------CEEEEEEC---CHHHHHHHHHHHHHcCCCccccE
Confidence 579999983 345667899999999998 55544432 2223444555554 35 74433
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=97.09 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--C
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV--G 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~--~ 180 (282)
++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++. ..++.+...++.+ .++.. .
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~~~~~~~~ 124 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----ESRIELLFGDALQ----LGEKLELY 124 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCGGG----SHHHHTTS
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHH----HHHhcccC
Confidence 36799999999999999998765 479999999 9999999999988763 3456666544332 12222 4
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|++.... .....+++.+.++|+||
T Consensus 125 ~~fD~I~~~~~~---~~~~~~l~~~~~~L~pg 153 (233)
T 2gpy_A 125 PLFDVLFIDAAK---GQYRRFFDMYSPMVRPG 153 (233)
T ss_dssp CCEEEEEEEGGG---SCHHHHHHHHGGGEEEE
T ss_pred CCccEEEECCCH---HHHHHHHHHHHHHcCCC
Confidence 689999987654 47789999999999998
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=102.30 Aligned_cols=97 Identities=20% Similarity=0.091 Sum_probs=78.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++... ..+++++|++.+++.+++++..++. ..++.+...|+.+ .+ ...
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~~---~~~ 248 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----ADRVTVAEGDFFK----PL---PVT 248 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS----CC---SCC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCC-----CCceEEEeCCCCC----cC---CCC
Confidence 357899999999999999998766 3699999998899999999987663 3467887766543 12 234
Q ss_pred ccEEEEcCccCCCCCH--HHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLF--DPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~--~~ll~~l~~ll~~g 212 (282)
||+|+++.++++.... ..+++.+.++|+||
T Consensus 249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg 280 (374)
T 1qzz_A 249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPG 280 (374)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999876654 48999999999998
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=97.38 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=74.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
++++|||||||+|..++.++... +++|+++|+ +.+++.+++|+..++. ..++.+...+..+ .++..
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~----~l~~l~~ 149 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALP----VLDEMIK 149 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHH----HHHHHHH
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHH----HHHHHHh
Confidence 36799999999999999999765 479999999 9999999999988764 3456666543322 11211
Q ss_pred ----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 ----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|++... ......+++.+.++|+||
T Consensus 150 ~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpG 183 (247)
T 1sui_A 150 DEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVG 183 (247)
T ss_dssp SGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTT
T ss_pred ccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCC
Confidence 468999998532 356889999999999998
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=107.01 Aligned_cols=129 Identities=17% Similarity=0.133 Sum_probs=87.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++. .+.+|+++|+ +.+++.++++ +. ......+.......++...++
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~-~g~~v~gvD~s~~~~~~a~~~----~~---------~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQE-AGVRHLGFEPSSGVAAKAREK----GI---------RVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHH-TTCEEEEECCCHHHHHHHHTT----TC---------CEECSCCSHHHHHHHHHHHCC
T ss_pred CCCCEEEEecCCCCHHHHHHHH-cCCcEEEECCCHHHHHHHHHc----CC---------CcceeeechhhHhhcccCCCC
Confidence 3578999999999999999975 4679999999 8999888764 11 011111111111122333578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee----------------cCcccHHHHHHHHh-hcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL----------------RRWKKDSVFFKKAK-KLF 245 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~----------------~~~~~~~~f~~~~~-~~f 245 (282)
||+|++..+++|..+...+++.+.++|+|| |.+++..... ..+.....+...++ .||
T Consensus 172 fD~I~~~~vl~h~~d~~~~l~~~~r~Lkpg------G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf 245 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYVQSVLEGVDALLAPD------GVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGF 245 (416)
T ss_dssp EEEEEEESCGGGCTTHHHHHHHHHHHEEEE------EEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTE
T ss_pred EEEEEECChHHhcCCHHHHHHHHHHHcCCC------eEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999998 5555543320 01112345555554 488
Q ss_pred ceEEEcc
Q 023457 246 DVETIHA 252 (282)
Q Consensus 246 ~ve~v~~ 252 (282)
++..+..
T Consensus 246 ~~~~~~~ 252 (416)
T 4e2x_A 246 ELVDVQR 252 (416)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7766554
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-10 Score=102.21 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=82.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+|||||||+|..++.+++..+ .+|+++|++.+++.+++++...+. ..++.+...|+.+.. .+ ....|
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~---~~-~p~~~ 249 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG-----SERIHGHGANLLDRD---VP-FPTGF 249 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTT-----GGGEEEEECCCCSSS---CC-CCCCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCc-----ccceEEEEccccccC---CC-CCCCc
Confidence 467999999999999999987654 699999998899999998876553 357888887765511 01 12579
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|++..++++..+ ...+++.+.+.|+|| |.++++-
T Consensus 250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg------G~l~i~e 287 (363)
T 3dp7_A 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKD------SKVYIME 287 (363)
T ss_dssp SEEEEESCSTTSCHHHHHHHHHHHHHHCCTT------CEEEEEE
T ss_pred CEEEEechhhhCCHHHHHHHHHHHHHhcCCC------cEEEEEe
Confidence 99999999986554 457899999999998 5655543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-10 Score=100.52 Aligned_cols=102 Identities=15% Similarity=0.020 Sum_probs=82.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+|||||||+|..+..++...+ .+++++|++.+++.+++++...+. ..++.+...|+.+ .+ ...|
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~~---p~~~ 236 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGL-----SGRAQVVVGSFFD----PL---PAGA 236 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS----CC---CCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCc-----CcCeEEecCCCCC----CC---CCCC
Confidence 457999999999999999987654 689999998899999999887653 4578888876653 11 2279
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|+|++..++++..+ ...+++.+.++|+|| |.++++
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg------G~l~i~ 273 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSG------GVVLVI 273 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTT------CEEEEE
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCC------CEEEEE
Confidence 99999999987766 488999999999998 565554
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.8e-10 Score=94.48 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..+ +.+|+++|+ +. + +.+...+..+ ++.....|
T Consensus 67 ~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~-----------~----------~~~~~~d~~~-----~~~~~~~f 116 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI----RNPVHCFDLASL-----------D----------PRVTVCDMAQ-----VPLEDESV 116 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC----CSCEEEEESSCS-----------S----------TTEEESCTTS-----CSCCTTCE
T ss_pred CCCeEEEECCcCCHHHHHh----hccEEEEeCCCC-----------C----------ceEEEecccc-----CCCCCCCE
Confidence 4679999999999988765 479999999 55 1 1122222222 22234689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEcccCCCCCcccc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIHADLPCNGARVG 262 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~~~~~~~~~~~ 262 (282)
|+|+++.++++ .....+++.+.++|+|| |. +++.....+......+...++ .||.+..+.... ..
T Consensus 117 D~v~~~~~l~~-~~~~~~l~~~~~~L~~g------G~-l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~------~~ 182 (215)
T 2zfu_A 117 DVAVFCLSLMG-TNIRDFLEEANRVLKPG------GL-LKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTN------SH 182 (215)
T ss_dssp EEEEEESCCCS-SCHHHHHHHHHHHEEEE------EE-EEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCS------TT
T ss_pred eEEEEehhccc-cCHHHHHHHHHHhCCCC------eE-EEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCC------Ce
Confidence 99999999974 78999999999999998 44 444444444445566666665 488887654321 12
Q ss_pred eEEEEEeeecCC
Q 023457 263 VVVYRMTGKAKS 274 (282)
Q Consensus 263 ~~v~~~~~~~~~ 274 (282)
..++.++|....
T Consensus 183 ~~~~~~~k~~~~ 194 (215)
T 2zfu_A 183 FFLFDFQKTGPP 194 (215)
T ss_dssp CEEEEEEECSSC
T ss_pred EEEEEEEecCcc
Confidence 345666655433
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-11 Score=104.13 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=74.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|+..++. ..++.+...|+.+ +. ...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-----~~-~~~~~ 145 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGI-----ADKIEFICGDFLL-----LA-SFLKA 145 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHH-----HG-GGCCC
T ss_pred CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC-----CcCeEEEECChHH-----hc-ccCCC
Confidence 4789999999999999999854 599999999 9999999999998764 2367777655443 22 24689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|+++.++++.......+..+.++|+|+
T Consensus 146 D~v~~~~~~~~~~~~~~~~~~~~~~L~pg 174 (241)
T 3gdh_A 146 DVVFLSPPWGGPDYATAETFDIRTMMSPD 174 (241)
T ss_dssp SEEEECCCCSSGGGGGSSSBCTTTSCSSC
T ss_pred CEEEECCCcCCcchhhhHHHHHHhhcCCc
Confidence 99999988877665554556667777776
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.10 E-value=9.9e-10 Score=96.03 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=77.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-C-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-G-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.++.+|||+|||+|..++.++... + .+|+++|+ +.+++.+++|+..++. .++.+...|... +..
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~-----~~~~~ 150 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRK-----YKDYL 150 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHH-----HHHHH
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHh-----cchhh
Confidence 347899999999999999998654 3 79999999 9999999999998763 256665543322 221
Q ss_pred --cCCCccEEEEcCccCC------------------CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 179 --VGREFDVILASDVVYH------------------DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 179 --~~~~fD~Ii~sd~ly~------------------~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
....||+|++..+... ......+++.+.++|+|| |.+++..+.
T Consensus 151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~lv~stcs 213 (274)
T 3ajd_A 151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD------GELVYSTCS 213 (274)
T ss_dssp HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE------EEEEEEESC
T ss_pred hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC------CEEEEEECC
Confidence 1468999998533221 135678999999999998 666555443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.3e-10 Score=95.58 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=84.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.++.+|||+|||+|..++.++... +.+|+++|+ +.+++.+++++..+ + ..++.+...|+.+. +..
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g------~~~v~~~~~d~~~~-----~~~ 163 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ------VENVRFHLGKLEEA-----ELE 163 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------CCCEEEEESCGGGC-----CCC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC------CCCEEEEECchhhc-----CCC
Confidence 457899999999999999998764 479999999 99999999999876 5 23566666555431 112
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCce
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDV 247 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~v 247 (282)
...||+|++. ......+++.+.++|+|| |.+++.... ......+...++ .+|..
T Consensus 164 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~g------G~l~~~~~~---~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 164 EAAYDGVALD-----LMEPWKVLEKAALALKPD------RFLVAYLPN---ITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp TTCEEEEEEE-----SSCGGGGHHHHHHHEEEE------EEEEEEESC---HHHHHHHHHHHTTTTEEE
T ss_pred CCCcCEEEEC-----CcCHHHHHHHHHHhCCCC------CEEEEEeCC---HHHHHHHHHHHHHCCCce
Confidence 3579999983 345668899999999998 555554432 223345555554 36654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=99.35 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++...+ .+|+++|++.+++.+++++..++. .+++.+...|+.+. + ...+
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-----~--~~~~ 257 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----ADRMRGIAVDIYKE-----S--YPEA 257 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----TTTEEEEECCTTTS-----C--CCCC
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----CCCEEEEeCccccC-----C--CCCC
Confidence 467999999999999999987663 699999998899999999987663 44688877666541 1 2235
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++++..+ ...+++.+.++|+|| |.++++-
T Consensus 258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pg------G~l~i~e 295 (359)
T 1x19_A 258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSG------GRLLILD 295 (359)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHTTCCTT------CEEEEEE
T ss_pred CEEEEechhccCCHHHHHHHHHHHHHhcCCC------CEEEEEe
Confidence 99999999987765 788999999999998 5655544
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=95.70 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=66.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..++.. +++|+ +.+++.++.+ ++.+...+... ++.....||
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~-----~~~~~~~fD 104 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------------GVFVLKGTAEN-----LPLKDESFD 104 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------------TCEEEECBTTB-----CCSCTTCEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------------CCEEEEccccc-----CCCCCCCee
Confidence 779999999999998877522 99999 9999988875 12344433322 222346899
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+|++..++++..+...+++.+.++|+||
T Consensus 105 ~v~~~~~l~~~~~~~~~l~~~~~~L~pg 132 (219)
T 1vlm_A 105 FALMVTTICFVDDPERALKEAYRILKKG 132 (219)
T ss_dssp EEEEESCGGGSSCHHHHHHHHHHHEEEE
T ss_pred EEEEcchHhhccCHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999998
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.10 E-value=8.3e-11 Score=101.32 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~ 181 (282)
++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++|+..++. ..++.+...|..+.....+... ..
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESEI 139 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----CccEEEEEcchhhhhhhhhhcccCC
Confidence 47799999999999999888654 589999999 9999999999998874 3457777655332000011110 15
Q ss_pred CccEEEEcCccCC
Q 023457 182 EFDVILASDVVYH 194 (282)
Q Consensus 182 ~fD~Ii~sd~ly~ 194 (282)
+||+|+++.+.+.
T Consensus 140 ~fD~i~~npp~~~ 152 (254)
T 2h00_A 140 IYDFCMCNPPFFA 152 (254)
T ss_dssp CBSEEEECCCCC-
T ss_pred cccEEEECCCCcc
Confidence 7999999877654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-10 Score=102.65 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=83.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..+++..+ .+++++|++.+++.+++++...+. ..++.+...|+.+. .......||
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~----~~~~~~~~D 250 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDL-----GGRVEFFEKNLLDA----RNFEGGAAD 250 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----GGGEEEEECCTTCG----GGGTTCCEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCC-----CCceEEEeCCcccC----cccCCCCcc
Confidence 77999999999999999987654 699999998899999999887653 45688888776551 101245699
Q ss_pred EEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 185 VILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 185 ~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+|++..++++..+ ...+++.+.+.|+|| |.++++-
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg------G~l~i~e 287 (352)
T 3mcz_A 251 VVMLNDCLHYFDAREAREVIGHAAGLVKPG------GALLILT 287 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTEEEE------EEEEEEE
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHcCCC------CEEEEEE
Confidence 9999999987654 488999999999998 5555543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-10 Score=98.16 Aligned_cols=161 Identities=12% Similarity=-0.001 Sum_probs=98.0
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
.+-+++..|.+.|..... ..++++|||||||||.++..++..++++|+++|+ +.|++...++
T Consensus 65 yvsrg~~Kl~~~l~~~~~------------~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~----- 127 (291)
T 3hp7_A 65 YVSRGGLKLEKALAVFNL------------SVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ----- 127 (291)
T ss_dssp SSSTTHHHHHHHHHHTTC------------CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT-----
T ss_pred cccchHHHHHHHHHhcCC------------CccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----
Confidence 466788888888876542 3458899999999999999888665579999999 8888774331
Q ss_pred cccccCCCcEEEEE-EEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec-
Q 023457 152 GLISLRGGSVHVAP-LRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR- 229 (282)
Q Consensus 152 ~~~~~~~~~v~~~~-ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~- 229 (282)
..++.... .+........++ ...||+|++.-.+. .+..++..+.++|+|| |.++++.-+.-
T Consensus 128 ------~~rv~~~~~~ni~~l~~~~l~--~~~fD~v~~d~sf~---sl~~vL~e~~rvLkpG------G~lv~lvkPqfe 190 (291)
T 3hp7_A 128 ------DDRVRSMEQYNFRYAEPVDFT--EGLPSFASIDVSFI---SLNLILPALAKILVDG------GQVVALVKPQFE 190 (291)
T ss_dssp ------CTTEEEECSCCGGGCCGGGCT--TCCCSEEEECCSSS---CGGGTHHHHHHHSCTT------CEEEEEECGGGT
T ss_pred ------CcccceecccCceecchhhCC--CCCCCEEEEEeeHh---hHHHHHHHHHHHcCcC------CEEEEEECcccc
Confidence 11221111 111110011111 23499999854443 4588999999999999 67766632100
Q ss_pred ---C------c---c-----cHHHHHHHHh-hcCceEEEcccCC-CCCcccceEEEE
Q 023457 230 ---R------W---K-----KDSVFFKKAK-KLFDVETIHADLP-CNGARVGVVVYR 267 (282)
Q Consensus 230 ---~------~---~-----~~~~f~~~~~-~~f~ve~v~~~~~-~~~~~~~~~v~~ 267 (282)
. . . ....+...+. .||.+..+...+. ...+...+.+|.
T Consensus 191 ~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~ 247 (291)
T 3hp7_A 191 AGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHL 247 (291)
T ss_dssp SCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEEEEE
T ss_pred cChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHHHHh
Confidence 0 0 0 1233334333 5898887776543 233444455543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-10 Score=96.91 Aligned_cols=94 Identities=13% Similarity=0.009 Sum_probs=72.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
+++|||||||+|..++.++... +.+|+++|+ +.+++.+++|+..++. ..++.+...++.+ .++....
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~~~~~~~- 126 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----IDRVELQVGDPLG----IAAGQRD- 126 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----GGGEEEEESCHHH----HHTTCCS-
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CceEEEEEecHHH----HhccCCC-
Confidence 6699999999999999998654 479999999 9999999999987664 3356666544322 1122245
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.. .......+++.+.++|+||
T Consensus 127 fD~v~~~~---~~~~~~~~l~~~~~~Lkpg 153 (210)
T 3c3p_A 127 IDILFMDC---DVFNGADVLERMNRCLAKN 153 (210)
T ss_dssp EEEEEEET---TTSCHHHHHHHHGGGEEEE
T ss_pred CCEEEEcC---ChhhhHHHHHHHHHhcCCC
Confidence 99999862 2467889999999999998
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-10 Score=103.05 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=72.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHH-------HHHHHhcccccccCCCcEEEEEE-EeCCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNL-------QFNVDANAGLISLRGGSVHVAPL-RWGEAEA 173 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~-------~~n~~~n~~~~~~~~~~v~~~~l-d~~~~~~ 173 (282)
.++.+|||||||+|.+++.+|...+ .+|+++|+ +.+++.+ +.|+..+++. ..++.+... ++.. .
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----~~nV~~i~gD~~~~--~ 314 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----LNNVEFSLKKSFVD--N 314 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----CCCEEEEESSCSTT--C
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----CCceEEEEcCcccc--c
Confidence 4578999999999999999997655 58999999 8888887 8888776531 135555432 1111 0
Q ss_pred cchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 174 NDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 174 ~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+......||+|+++.+++. .....+++.+.+.|+||
T Consensus 315 ~~~~~~~~~FDvIvvn~~l~~-~d~~~~L~el~r~LKpG 352 (433)
T 1u2z_A 315 NRVAELIPQCDVILVNNFLFD-EDLNKKVEKILQTAKVG 352 (433)
T ss_dssp HHHHHHGGGCSEEEECCTTCC-HHHHHHHHHHHTTCCTT
T ss_pred cccccccCCCCEEEEeCcccc-ccHHHHHHHHHHhCCCC
Confidence 011112367999999877743 56777889999999998
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=109.42 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=75.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.++++|||||||+|.+++.+++....+|+++|++.+++.+++++..|++ ..++.+...++.+. . ...+|
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl-----~~~v~~~~~d~~~~-----~-~~~~f 225 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----TDRIVVIPGKVEEV-----S-LPEQV 225 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTC-----TTTEEEEESCTTTC-----C-CSSCE
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCC-----CCcEEEEECchhhC-----c-cCCCe
Confidence 3578999999999999999986545699999993399999999998874 45788887776552 1 13579
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g 212 (282)
|+|+++.++|+. +.....+..+.++|+||
T Consensus 226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkpg 256 (480)
T 3b3j_A 226 DIIISEPMGYMLFNERMLESYLHAKKYLKPS 256 (480)
T ss_dssp EEEECCCCHHHHTCHHHHHHHHHGGGGEEEE
T ss_pred EEEEEeCchHhcCcHHHHHHHHHHHHhcCCC
Confidence 999998776754 33455666778899998
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=97.87 Aligned_cols=104 Identities=15% Similarity=0.077 Sum_probs=71.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH--h-CCEEEEEeh-HhHHHHHHHHHHhc---cccccc--------------------C
Q 023457 105 CQLNILELGSGTGLVGMAAAAI--L-GAKVTVTDL-PHVLTNLQFNVDAN---AGLISL--------------------R 157 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~--~-~~~V~~tD~-~~~l~~~~~n~~~n---~~~~~~--------------------~ 157 (282)
++.+|||+|||+|..++.++.. . +.+|+++|+ +.+++.++.|+..+ +..... .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999999999865 2 468999999 99999999998766 321000 0
Q ss_pred CCcEE-------------EEEEEeCCCCccchhh----cCCCccEEEEcCccCCCC---------CHHHHHHHHHHHHhc
Q 023457 158 GGSVH-------------VAPLRWGEAEANDVAV----VGREFDVILASDVVYHDH---------LFDPLLVTLRLFLNS 211 (282)
Q Consensus 158 ~~~v~-------------~~~ld~~~~~~~~~~~----~~~~fD~Ii~sd~ly~~~---------~~~~ll~~l~~ll~~ 211 (282)
..++. +...|+.+ .... ...+||+|+++.++.... ....+++.+.++|+|
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~----~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 206 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFD----PRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA 206 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTC----GGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred hhhhhhhccccccccccceeeccccc----ccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC
Confidence 00023 55544433 1110 234799999986654332 245889999999999
Q ss_pred C
Q 023457 212 G 212 (282)
Q Consensus 212 g 212 (282)
|
T Consensus 207 g 207 (250)
T 1o9g_A 207 H 207 (250)
T ss_dssp T
T ss_pred C
Confidence 8
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-10 Score=93.10 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.+++++..++ ++.+...|... .+. ...+|
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--------~v~~~~~d~~~----~~~-~~~~f 135 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN--------NIKLILGDGTL----GYE-EEKPY 135 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS--------SEEEEESCGGG----CCG-GGCCE
T ss_pred CCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC--------CeEEEECCccc----ccc-cCCCc
Confidence 4779999999999999999865 489999999 999999999886532 45555544433 111 24689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|++..++++.. ..+.++|+|| |.+++..
T Consensus 136 D~v~~~~~~~~~~------~~~~~~L~pg------G~l~~~~ 165 (231)
T 1vbf_A 136 DRVVVWATAPTLL------CKPYEQLKEG------GIMILPI 165 (231)
T ss_dssp EEEEESSBBSSCC------HHHHHTEEEE------EEEEEEE
T ss_pred cEEEECCcHHHHH------HHHHHHcCCC------cEEEEEE
Confidence 9999999987653 4678899998 5555544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.2e-10 Score=101.60 Aligned_cols=102 Identities=19% Similarity=0.084 Sum_probs=75.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+++|||+|||+|..++.+|..++.+|+++|+ +.+++.+++|+..|+.. ..++.+...|..+.. ..+.....+||
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~----~~~v~~~~~D~~~~~-~~~~~~~~~fD 295 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLL-RTYRDRGEKFD 295 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCHHHHH-HHHHHTTCCEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHHHHH-HHHHhcCCCCC
Confidence 7799999999999999998655579999999 99999999999998740 125666654433210 01111145899
Q ss_pred EEEEcCccCCC---------CCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHD---------HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g 212 (282)
+|++..+.+.. ..+..++..+.++|+|+
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 332 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEG 332 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEE
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99997654432 45778888999999997
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-10 Score=97.97 Aligned_cols=123 Identities=14% Similarity=0.029 Sum_probs=85.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|..++.++... +.+|+++|+ +.+++.+++|+..++. ..++.+...|+.+. + ..
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~----~--~~ 179 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISEG----F--DE 179 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGGC----C--SC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHc----c--cC
Confidence 457899999999999999998763 479999999 9999999999988763 23566665544431 1 23
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
..||+|++. ......+++.+.++|+|+ |.+++.... ......+.+.++ .+|....+.
T Consensus 180 ~~~D~V~~~-----~~~~~~~l~~~~~~L~pg------G~l~~~~~~---~~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 180 KDVDALFLD-----VPDPWNYIDKCWEALKGG------GRFATVCPT---TNQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp CSEEEEEEC-----CSCGGGTHHHHHHHEEEE------EEEEEEESS---HHHHHHHHHHHHHSSEEEEEEE
T ss_pred CccCEEEEC-----CcCHHHHHHHHHHHcCCC------CEEEEEeCC---HHHHHHHHHHHHHCCCceeEEE
Confidence 579999983 345568899999999998 555544322 122344444444 467654443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=99.49 Aligned_cols=95 Identities=18% Similarity=0.055 Sum_probs=70.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc-hhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND-VAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~-~~~~~~~ 182 (282)
+|++|||+|||||..++.+|.. ++.|+++|+ +.+++.+++|+..|+.. .+ +.. ++ ..+ +......
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~-----~~--~~~---~D--~~~~l~~~~~~ 280 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR-----VD--IRH---GE--ALPTLRGLEGP 280 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC-----CE--EEE---SC--HHHHHHTCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC-----Cc--EEE---cc--HHHHHHHhcCC
Confidence 3889999999999999999854 566999999 99999999999999852 22 222 22 211 1122345
Q ss_pred ccEEEEcCccCCC---------CCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHD---------HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g 212 (282)
||+|++..+.+.. ..+..++..+.++|+||
T Consensus 281 fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpG 319 (393)
T 4dmg_A 281 FHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEE 319 (393)
T ss_dssp EEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEE
T ss_pred CCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999997655432 24567888889999998
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.07 E-value=7e-10 Score=94.89 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=74.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
++++|||||||+|..++.++... +.+|+++|+ +.+++.+++|+..++. ..++.+...|..+ .++..
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~----~l~~l~~ 140 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----EHKINFIESDAML----ALDNLLQ 140 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHH----HHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHH----HHHHHHh
Confidence 36799999999999999998765 479999999 9999999999988764 3457666544322 11111
Q ss_pred ----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 ----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|++.. .......+++.+.++|+||
T Consensus 141 ~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~pG 174 (237)
T 3c3y_A 141 GQESEGSYDFGFVDA---DKPNYIKYHERLMKLVKVG 174 (237)
T ss_dssp STTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEE
T ss_pred ccCCCCCcCEEEECC---chHHHHHHHHHHHHhcCCC
Confidence 46899999852 2456788999999999998
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.2e-10 Score=95.61 Aligned_cols=148 Identities=17% Similarity=0.074 Sum_probs=89.1
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
.+-+++..|.+.|..... ...+++|||||||||..+..+++.+..+|+++|+ +.|++.++++...
T Consensus 17 yvsrg~~kL~~~L~~~~~------------~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~-- 82 (232)
T 3opn_A 17 YVSRGGLKLEKALKEFHL------------EINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER-- 82 (232)
T ss_dssp SSSTTHHHHHHHHHHTTC------------CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT--
T ss_pred ccCCcHHHHHHHHHHcCC------------CCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc--
Confidence 466788888888876542 3457899999999999999998664469999999 8898886653221
Q ss_pred cccccCCCcEEEEE-EEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee--
Q 023457 152 GLISLRGGSVHVAP-LRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL-- 228 (282)
Q Consensus 152 ~~~~~~~~~v~~~~-ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~-- 228 (282)
+.... .++......++. ...||.+.+ |+++. .+..++..+.++|+|| |.++++....
T Consensus 83 ---------~~~~~~~~~~~~~~~~~~--~~~~d~~~~-D~v~~--~l~~~l~~i~rvLkpg------G~lv~~~~p~~e 142 (232)
T 3opn_A 83 ---------VVVMEQFNFRNAVLADFE--QGRPSFTSI-DVSFI--SLDLILPPLYEILEKN------GEVAALIKPQFE 142 (232)
T ss_dssp ---------EEEECSCCGGGCCGGGCC--SCCCSEEEE-CCSSS--CGGGTHHHHHHHSCTT------CEEEEEECHHHH
T ss_pred ---------ccccccceEEEeCHhHcC--cCCCCEEEE-EEEhh--hHHHHHHHHHHhccCC------CEEEEEECcccc
Confidence 11110 011100011111 112565544 33332 2378999999999999 6766653110
Q ss_pred cC------------c----ccHHHHHHHHh-hcCceEEEcccC
Q 023457 229 RR------------W----KKDSVFFKKAK-KLFDVETIHADL 254 (282)
Q Consensus 229 ~~------------~----~~~~~f~~~~~-~~f~ve~v~~~~ 254 (282)
.. . .....+...++ .||.+..+...+
T Consensus 143 ~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 143 AGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp SCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECS
T ss_pred cCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEcc
Confidence 00 0 01234444444 499998877654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=98.75 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=68.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++... . +...+..+ ++...++|
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~----------~--~~~~d~~~-----~~~~~~~f 115 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVK----------N--VVEAKAED-----LPFPSGAF 115 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTCS----------C--EEECCTTS-----CCSCTTCE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcCC----------C--EEECcHHH-----CCCCCCCE
Confidence 4779999999999999999754 689999999 9999998876431 1 23323222 22235689
Q ss_pred cEEEEcCccCC-CCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYH-DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~-~~~~~~ll~~l~~ll~~g 212 (282)
|+|++..++++ ..+...+++.+.++|+||
T Consensus 116 D~v~~~~~~~~~~~~~~~~l~~~~~~Lkpg 145 (260)
T 2avn_A 116 EAVLALGDVLSYVENKDKAFSEIRRVLVPD 145 (260)
T ss_dssp EEEEECSSHHHHCSCHHHHHHHHHHHEEEE
T ss_pred EEEEEcchhhhccccHHHHHHHHHHHcCCC
Confidence 99999876554 467999999999999998
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=96.05 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=73.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++. ..++.+...+..+ .++..
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~----~~~~~~~ 130 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----ENKIFLKLGSALE----TLQVLID 130 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHH----HHHHHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHH----HHHHHHh
Confidence 36799999999999999998775 479999999 9999999999987763 2346666544322 11111
Q ss_pred -------------C-CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 -------------G-REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 -------------~-~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
. .+||+|++... ......+++.+.++|+||
T Consensus 131 ~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pg 174 (239)
T 2hnk_A 131 SKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPG 174 (239)
T ss_dssp CSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEE
T ss_pred hcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCC
Confidence 1 68999998633 456778999999999998
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=111.09 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~~ 181 (282)
++.+|||||||+|.++..+| +.|+.|+++|. +.+++.++.....++. .++.+...+ .+++. ...+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la-~~ga~V~giD~~~~~i~~a~~~a~~~~~------~~~~~~~~~-----~~~~~~~~~~~ 133 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLA-SKGATIVGIDFQQENINVCRALAEENPD------FAAEFRVGR-----IEEVIAALEEG 133 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTSTT------SEEEEEECC-----HHHHHHHCCTT
T ss_pred CCCeEEEECCCCcHHHHHHH-hCCCEEEEECCCHHHHHHHHHHHHhcCC------CceEEEECC-----HHHHhhhccCC
Confidence 46799999999999999998 56799999999 9999999998876652 234444432 33332 1256
Q ss_pred CccEEEEcCccCCCCCHHHH--HHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPL--LVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~l--l~~l~~ll~~g 212 (282)
+||+|++..+++|..+...+ +..+.+.++++
T Consensus 134 ~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~ 166 (569)
T 4azs_A 134 EFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADV 166 (569)
T ss_dssp SCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEECcchhcCCCHHHHHHHHHHHHHhccc
Confidence 89999999999987654322 22344445565
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=100.65 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=84.6
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
...++..++..+. ..++.+|||+|||+|..++.++...+ .+|+++|+ +.+++.+++|+..+
T Consensus 244 qd~~s~l~~~~l~----------------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~ 307 (450)
T 2yxl_A 244 QEEASAVASIVLD----------------PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM 307 (450)
T ss_dssp CCHHHHHHHHHHC----------------CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred cCchhHHHHHhcC----------------CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence 3456677777662 23477999999999999999987653 69999999 99999999999987
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEc------CccCCCCCH----------------HHHHHHHHHH
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILAS------DVVYHDHLF----------------DPLLVTLRLF 208 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~s------d~ly~~~~~----------------~~ll~~l~~l 208 (282)
+. .++.+...|...... . .....||+|++. .++...++. ..+++.+.++
T Consensus 308 g~------~~v~~~~~D~~~~~~-~--~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~ 378 (450)
T 2yxl_A 308 GI------KIVKPLVKDARKAPE-I--IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARL 378 (450)
T ss_dssp TC------CSEEEECSCTTCCSS-S--SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTT
T ss_pred CC------CcEEEEEcChhhcch-h--hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 63 245555544433110 0 112579999962 223322222 5788999999
Q ss_pred HhcCCCCCCCceEEEEEEe
Q 023457 209 LNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 209 l~~g~~~~~~g~~~il~~~ 227 (282)
|+|| |.+++..+.
T Consensus 379 LkpG------G~lvy~tcs 391 (450)
T 2yxl_A 379 VKPG------GRLLYTTCS 391 (450)
T ss_dssp EEEE------EEEEEEESC
T ss_pred cCCC------cEEEEEeCC
Confidence 9998 666655444
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=97.82 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=78.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++...+ .+++++|++.+++.+++++..++. ..++.+...|+.+ .+ ...
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~~---~~~ 249 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----SDRVDVVEGDFFE----PL---PRK 249 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----TTTEEEEECCTTS----CC---SSC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCC-----CCceEEEeCCCCC----CC---CCC
Confidence 3577999999999999999987654 689999998899999999987663 3468888766654 12 234
Q ss_pred ccEEEEcCccCCCCCH--HHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLF--DPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~--~~ll~~l~~ll~~g 212 (282)
||+|+++.++++.... ..+++.+.++|+||
T Consensus 250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg 281 (360)
T 1tw3_A 250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPG 281 (360)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred ccEEEEcccccCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999876554 58999999999998
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.1e-10 Score=99.17 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=70.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++. |+ .+.+|+++|+ +.+++.+++|+..|+. ..++.+...|..+ + ...|
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l-----~~~v~~~~~D~~~-----~---~~~f 259 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKL-----EHKIIPILSDVRE-----V---DVKG 259 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGG-----C---CCCE
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECChHH-----h---cCCC
Confidence 578999999999999999 85 6789999999 9999999999999984 3456666654433 1 1689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++..+-+ ...++..+.++++++
T Consensus 260 D~Vi~dpP~~----~~~~l~~~~~~L~~g 284 (336)
T 2yx1_A 260 NRVIMNLPKF----AHKFIDKALDIVEEG 284 (336)
T ss_dssp EEEEECCTTT----GGGGHHHHHHHEEEE
T ss_pred cEEEECCcHh----HHHHHHHHHHHcCCC
Confidence 9999954432 237788888999997
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-09 Score=97.07 Aligned_cols=125 Identities=15% Similarity=0.079 Sum_probs=83.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.+|.. +.+|+++|+ +.+++.+++|+..|+. .++.+...|+.+... .++....+|
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~d~~~~l~-~~~~~~~~f 357 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVT-KQPWAKNGF 357 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCS-SSGGGTTCC
T ss_pred CCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEECCHHHHhh-hhhhhcCCC
Confidence 4679999999999999999854 789999999 9999999999998874 267777766655211 112224579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHH-HHHHHHhhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDS-VFFKKAKKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~-~f~~~~~~~f~ve~v~ 251 (282)
|+|++... |.. ...+++.+.. ++++ +++++.+. ..... ......+.+|.++.+.
T Consensus 358 D~Vv~dPP-r~g--~~~~~~~l~~-~~p~-------~ivyvsc~---p~tlard~~~l~~~Gy~~~~~~ 412 (433)
T 1uwv_A 358 DKVLLDPA-RAG--AAGVMQQIIK-LEPI-------RIVYVSCN---PATLARDSEALLKAGYTIARLA 412 (433)
T ss_dssp SEEEECCC-TTC--CHHHHHHHHH-HCCS-------EEEEEESC---HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEECCC-Ccc--HHHHHHHHHh-cCCC-------eEEEEECC---hHHHHhhHHHHHHCCcEEEEEE
Confidence 99998544 332 2355665544 4454 66666543 22222 2222334689887654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-09 Score=97.99 Aligned_cols=122 Identities=17% Similarity=0.131 Sum_probs=83.9
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
...++..++..+. ..++.+|||+|||+|..++.++...+ .+|+++|+ +.+++.+++|+..++
T Consensus 231 qd~~s~~~~~~l~----------------~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g 294 (429)
T 1sqg_A 231 QDASAQGCMTWLA----------------PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 294 (429)
T ss_dssp CCHHHHTHHHHHC----------------CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred eCHHHHHHHHHcC----------------CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC
Confidence 3457777777762 23478999999999999999987664 69999999 999999999999876
Q ss_pred cccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcC------ccCCCCCH----------------HHHHHHHHHHH
Q 023457 152 GLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASD------VVYHDHLF----------------DPLLVTLRLFL 209 (282)
Q Consensus 152 ~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd------~ly~~~~~----------------~~ll~~l~~ll 209 (282)
. .+.+...|.... .. ......||+|++.. ++.+.++. ..+++.+.++|
T Consensus 295 ~-------~~~~~~~D~~~~--~~-~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~L 364 (429)
T 1sqg_A 295 M-------KATVKQGDGRYP--SQ-WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL 364 (429)
T ss_dssp C-------CCEEEECCTTCT--HH-HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE
T ss_pred C-------CeEEEeCchhhc--hh-hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 244444443331 10 01236899999732 22222222 47788889999
Q ss_pred hcCCCCCCCceEEEEEEe
Q 023457 210 NSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 210 ~~g~~~~~~g~~~il~~~ 227 (282)
+|| |.+++..+.
T Consensus 365 kpG------G~lvystcs 376 (429)
T 1sqg_A 365 KTG------GTLVYATCS 376 (429)
T ss_dssp EEE------EEEEEEESC
T ss_pred CCC------CEEEEEECC
Confidence 998 566554443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-10 Score=102.89 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=82.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCC-cEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGG-SVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~-~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++++|||+|||+|..++.+|...+.+|+++|+ +.+++.+++|+..|+. .. ++.+...|..+. ...+.....+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----~~~~v~~~~~D~~~~-l~~~~~~~~~ 285 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDY-FKYARRHHLT 285 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHH-HHHHHHTTCC
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHH-HHHHHHhCCC
Confidence 37799999999999999998655569999999 9999999999999985 22 566666443320 0011111358
Q ss_pred ccEEEEcCccCC-----CC----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH
Q 023457 183 FDVILASDVVYH-----DH----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA 241 (282)
Q Consensus 183 fD~Ii~sd~ly~-----~~----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~ 241 (282)
||+|++..+.+. .. .+..++..+.++|+|+ +.++++...... ....|.+.+
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pg-------G~l~~~~~~~~~-~~~~~~~~i 345 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-------GLIIASTNAANM-TVSQFKKQI 345 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-------EEEEEEECCTTS-CHHHHHHHH
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCC-------cEEEEEeCCCcC-CHHHHHHHH
Confidence 999999655542 11 2445677778999998 445554433332 334555444
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-09 Score=96.30 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|..++.++...+ .+|+++|+ +.+++.+++++..++. .++.+...|+.+. . ....
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~v~~~~~d~~~~----~-~~~~ 143 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYG----V-PEFS 143 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGC----C-GGGC
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEECChhhc----c-ccCC
Confidence 578999999999999999987654 46999999 9999999999988763 2466666554431 1 1246
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||+|++..++++.. +.+.++|+|| |.+++.+
T Consensus 144 ~fD~Iv~~~~~~~~~------~~~~~~Lkpg------G~lvi~~ 175 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP------ETWFTQLKEG------GRVIVPI 175 (317)
T ss_dssp CEEEEEECSBBSCCC------HHHHHHEEEE------EEEEEEB
T ss_pred CeEEEEEcCCHHHHH------HHHHHhcCCC------cEEEEEE
Confidence 799999999987654 5778899998 5555543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=93.04 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=76.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|...++. ..++.+...|+.+. . .....
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~----~-~~~~~ 158 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNL-----GKNVKFFNVDFKDA----E-VPEGI 158 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTC-----CTTEEEECSCTTTS----C-CCTTC
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC-----CCcEEEEEcChhhc----c-cCCCc
Confidence 35789999999999999999876 889999999 9999999999987653 24566655444431 1 01357
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|+++ ......+++.+.++|+++ |.+++...
T Consensus 159 ~D~v~~~-----~~~~~~~l~~~~~~L~~g------G~l~~~~~ 191 (248)
T 2yvl_A 159 FHAAFVD-----VREPWHYLEKVHKSLMEG------APVGFLLP 191 (248)
T ss_dssp BSEEEEC-----SSCGGGGHHHHHHHBCTT------CEEEEEES
T ss_pred ccEEEEC-----CcCHHHHHHHHHHHcCCC------CEEEEEeC
Confidence 9999984 335667889999999998 56655543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.5e-10 Score=98.24 Aligned_cols=126 Identities=14% Similarity=0.041 Sum_probs=84.4
Q ss_pred CcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCCCc
Q 023457 107 LNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGREF 183 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~~f 183 (282)
.+|||||||+|.++..+++.. +.+|+++|+ +.+++.+++++..+. ..++.+..-|... .+.. ...+|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~------~~rv~v~~~Da~~----~l~~~~~~~f 160 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR------APRVKIRVDDARM----VAESFTPASR 160 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC------TTTEEEEESCHHH----HHHTCCTTCE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC------CCceEEEECcHHH----HHhhccCCCC
Confidence 499999999999999998644 469999999 999999999875432 3466666533222 1111 14689
Q ss_pred cEEEEcCccCC---CCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEE
Q 023457 184 DVILASDVVYH---DHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~---~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~ 249 (282)
|+||+. +... ... ...+++.++++|+++ |.+++.............+...+.+.|....
T Consensus 161 DvIi~D-~~~~~~~~~~L~t~efl~~~~r~Lkpg------Gvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~ 224 (317)
T 3gjy_A 161 DVIIRD-VFAGAITPQNFTTVEFFEHCHRGLAPG------GLYVANCGDHSDLRGAKSELAGMMEVFEHVA 224 (317)
T ss_dssp EEEEEC-CSTTSCCCGGGSBHHHHHHHHHHEEEE------EEEEEEEEECTTCHHHHHHHHHHHHHCSEEE
T ss_pred CEEEEC-CCCccccchhhhHHHHHHHHHHhcCCC------cEEEEEecCCcchHHHHHHHHHHHHHCCceE
Confidence 999984 2221 111 268999999999998 5555544322222234566777777785433
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-09 Score=98.58 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=85.0
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..-.++..++.++. ..++.+|||+|||+|..++.+|...+ ++|+++|+ +.+++.+++|+..
T Consensus 85 vQd~ss~l~a~~L~----------------~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r 148 (464)
T 3m6w_A 85 IQEPSAQAVGVLLD----------------PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER 148 (464)
T ss_dssp ECCTTTHHHHHHHC----------------CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHhcC----------------cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 44557777777772 23578999999999999999987653 69999999 9999999999998
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchh-hcCCCccEEEEcCc------cCCCCC----------------HHHHHHHHH
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVA-VVGREFDVILASDV------VYHDHL----------------FDPLLVTLR 206 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~fD~Ii~sd~------ly~~~~----------------~~~ll~~l~ 206 (282)
++. . +.+...| ...+. .....||+|++..+ +...++ ...+++.+.
T Consensus 149 ~G~------~-v~~~~~D-----a~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~ 216 (464)
T 3m6w_A 149 WGA------P-LAVTQAP-----PRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQAS 216 (464)
T ss_dssp HCC------C-CEEECSC-----HHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHH
T ss_pred cCC------e-EEEEECC-----HHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 874 1 4443322 22233 13578999996322 221111 267888899
Q ss_pred HHHhcCCCCCCCceEEEEEEee
Q 023457 207 LFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 207 ~ll~~g~~~~~~g~~~il~~~~ 228 (282)
++|+|| |.+++..+..
T Consensus 217 ~~LkpG------G~LvysTCs~ 232 (464)
T 3m6w_A 217 RLLGPG------GVLVYSTCTF 232 (464)
T ss_dssp TTEEEE------EEEEEEESCC
T ss_pred HhcCCC------cEEEEEeccC
Confidence 999998 6666654443
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=98.50 Aligned_cols=106 Identities=9% Similarity=0.069 Sum_probs=79.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~ 180 (282)
.++++||||| |+|.+++.++...+ .+|+++|+ +.+++.+++|+..++. . ++.+...|+.+. ++. ..
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~-----~-~v~~~~~D~~~~----l~~~~~ 239 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-----E-DIEIFTFDLRKP----LPDYAL 239 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC-----C-CEEEECCCTTSC----CCTTTS
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----C-CEEEEEChhhhh----chhhcc
Confidence 3578999999 99999999986655 79999999 9999999999998874 2 566666554431 221 23
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
..||+|+++.++... ....+++.+.++|+|| |+++++...
T Consensus 240 ~~fD~Vi~~~p~~~~-~~~~~l~~~~~~Lkpg------G~~~~~~~~ 279 (373)
T 2qm3_A 240 HKFDTFITDPPETLE-AIRAFVGRGIATLKGP------RCAGYFGIT 279 (373)
T ss_dssp SCBSEEEECCCSSHH-HHHHHHHHHHHTBCST------TCEEEEEEC
T ss_pred CCccEEEECCCCchH-HHHHHHHHHHHHcccC------CeEEEEEEe
Confidence 579999997654333 3678899999999998 655444433
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-09 Score=99.23 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=86.7
Q ss_pred ceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHH
Q 023457 72 FKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 72 ~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~ 148 (282)
...-.++..++..+. ..++.+|||+|||+|..++.+|...+ ++|+++|+ +.+++.+++|+.
T Consensus 88 ~vQd~ss~l~~~~L~----------------~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~ 151 (456)
T 3m4x_A 88 YSQEPSAMIVGTAAA----------------AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIE 151 (456)
T ss_dssp EECCTTTHHHHHHHC----------------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHcC----------------CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 345667788887772 23478999999999999999986653 69999999 999999999999
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchh-hcCCCccEEEEcCcc------CCCC----------------CHHHHHHHH
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGREFDVILASDVV------YHDH----------------LFDPLLVTL 205 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~fD~Ii~sd~l------y~~~----------------~~~~ll~~l 205 (282)
.++. .++.+...| ...+. .....||+|++..+. ...+ ....++..+
T Consensus 152 r~g~------~nv~v~~~D-----a~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a 220 (456)
T 3m4x_A 152 RWGV------SNAIVTNHA-----PAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSA 220 (456)
T ss_dssp HHTC------SSEEEECCC-----HHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHH
T ss_pred HcCC------CceEEEeCC-----HHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHH
Confidence 8874 245544422 22222 235789999984331 1111 122678888
Q ss_pred HHHHhcCCCCCCCceEEEEEEee
Q 023457 206 RLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 206 ~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
.++|+|| |.+++..+..
T Consensus 221 ~~~LkpG------G~LvYsTCs~ 237 (456)
T 3m4x_A 221 IKMLKNK------GQLIYSTCTF 237 (456)
T ss_dssp HHTEEEE------EEEEEEESCC
T ss_pred HHhcCCC------cEEEEEEeec
Confidence 9999998 6666655443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.1e-10 Score=95.47 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=84.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..+|||||||+|.+++.++.. ..++|+++|+ +.+++.++.|+..|+. ...+...|... ..+..+|
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-------~~~~~v~D~~~------~~p~~~~ 199 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-------PHRTNVADLLE------DRLDEPA 199 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-------CEEEEECCTTT------SCCCSCC
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------CceEEEeeecc------cCCCCCc
Confidence 569999999999999998754 2479999999 9999999999999875 24444433332 1235789
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEe--e--cCccc----HHHHHHHHh-hcCceEEEcc
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAH--L--RRWKK----DSVFFKKAK-KLFDVETIHA 252 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~--~--~~~~~----~~~f~~~~~-~~f~ve~v~~ 252 (282)
|+|+++.++.+-+. -..++ .+...|+++ ++++.+.. . |.... ...|...+. +++.++++..
T Consensus 200 DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~-------~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~ 271 (281)
T 3lcv_B 200 DVTLLLKTLPCLETQQRGSGW-EVIDIVNSP-------NIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEI 271 (281)
T ss_dssp SEEEETTCHHHHHHHSTTHHH-HHHHHSSCS-------EEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred chHHHHHHHHHhhhhhhHHHH-HHHHHhCCC-------CEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeee
Confidence 99999998875432 22444 566677776 55554443 1 22221 233333343 6888888764
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.9e-10 Score=100.65 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=72.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHH-------hcccccccCCCcEEEEEEEeCCCCcc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVD-------ANAGLISLRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~-------~n~~~~~~~~~~v~~~~ld~~~~~~~ 174 (282)
.++.+|||||||+|.+.+.+|...+. +|+++|+ +.+++.+++|++ .++. ...++.+...|..+ .
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl----~~~rVefi~GD~~~--l- 244 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK----KHAEYTLERGDFLS--E- 244 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB----CCCEEEEEECCTTS--H-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC----CCCCeEEEECcccC--C-
Confidence 35889999999999999999866665 5999999 899999988764 2332 12467776655444 1
Q ss_pred chhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 175 DVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+......||+|+++.+++ .+.....+..+.+.|+||
T Consensus 245 p~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPG 281 (438)
T 3uwp_A 245 EWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEG 281 (438)
T ss_dssp HHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTT
T ss_pred ccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCC
Confidence 1111114699999987665 456667778888999998
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=93.12 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++...+.+|+++|+ +.+++.+++++..++. .++.+...|+.. .++. ..+|
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~----~~~~-~~~f 159 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSK----GFPP-KAPY 159 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGG----CCGG-GCCE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEECCccc----CCCC-CCCc
Confidence 47799999999999999998776689999999 9999999999987663 235655544311 1111 2359
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++.+.. ..+.++|+|| |.+++.+
T Consensus 160 D~Ii~~~~~~~~~------~~~~~~L~pg------G~lvi~~ 189 (235)
T 1jg1_A 160 DVIIVTAGAPKIP------EPLIEQLKIG------GKLIIPV 189 (235)
T ss_dssp EEEEECSBBSSCC------HHHHHTEEEE------EEEEEEE
T ss_pred cEEEECCcHHHHH------HHHHHhcCCC------cEEEEEE
Confidence 9999988876543 3677899998 5555544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.9e-10 Score=94.21 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=73.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC-
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG- 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~- 180 (282)
++++|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++. ..++.+...+..+. ...+....
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~-~~~~~~~~~ 142 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALET-LDELLAAGE 142 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHH-HHHHHHTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CCeEEEEEcCHHHH-HHHHHhcCC
Confidence 46799999999999999998654 479999999 9999999999988764 34666665443220 00111111
Q ss_pred -CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 -REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 -~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|++... ......+++.+.++|+||
T Consensus 143 ~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pg 172 (229)
T 2avd_A 143 AGTFDVAVVDAD---KENCSAYYERCLQLLRPG 172 (229)
T ss_dssp TTCEEEEEECSC---STTHHHHHHHHHHHEEEE
T ss_pred CCCccEEEECCC---HHHHHHHHHHHHHHcCCC
Confidence 68999998543 456788999999999998
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=107.74 Aligned_cols=103 Identities=11% Similarity=0.031 Sum_probs=76.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|.+++.++...+ .+|+++|+ +.+++.+++++............++.+...|..+ ++....
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d-----Lp~~d~ 795 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE-----FDSRLH 795 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS-----CCTTSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh-----CCcccC
Confidence 478999999999999999985543 79999999 9999999987764321000012356666544433 333357
Q ss_pred CccEEEEcCccCCCCCHH--HHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFD--PLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~--~ll~~l~~ll~~g 212 (282)
.||+|++..++++..... .+++.+.++|+||
T Consensus 796 sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 796 DVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp SCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 899999999999877544 5899999999985
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-10 Score=102.48 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=75.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|..+..+|+++|+ +.+++.+++|+..|+. ..++.+...|+.+.. ..+.....+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~-----~~~v~~~~~d~~~~~-~~~~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEM-EKLQKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHH-HHHHHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEECCHHHHH-HHHHhhCCCC
Confidence 47899999999999999998654569999999 9999999999999874 225666664443200 0111114689
Q ss_pred cEEEEcCccCCC---------CCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHD---------HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g 212 (282)
|+|++..+.+.. ..+..++..+.++|+||
T Consensus 291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 328 (396)
T 2as0_A 291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG 328 (396)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999996655442 34667888888999998
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-09 Score=86.51 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=93.0
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLI 154 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~ 154 (282)
+++..|.+.+.+... ..++.+|||||||+|..+..++.. +++|+++|+ +..
T Consensus 8 Ra~~KL~ei~~~~~~------------~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~--------------- 59 (191)
T 3dou_A 8 RAAFKLEFLLDRYRV------------VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME--------------- 59 (191)
T ss_dssp HHHHHHHHHHHHHCC------------SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC---------------
T ss_pred cHHHHHHHHHHHcCC------------CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc---------------
Confidence 466777777766541 235889999999999999999855 789999999 531
Q ss_pred ccCCCcEEEEEEEeCCCCccc-h-hhcC----CCccEEEEcCccCCCC-----------CHHHHHHHHHHHHhcCCCCCC
Q 023457 155 SLRGGSVHVAPLRWGEAEAND-V-AVVG----REFDVILASDVVYHDH-----------LFDPLLVTLRLFLNSGEPEPK 217 (282)
Q Consensus 155 ~~~~~~v~~~~ld~~~~~~~~-~-~~~~----~~fD~Ii~sd~ly~~~-----------~~~~ll~~l~~ll~~g~~~~~ 217 (282)
...++.+.+.|+.+..... + .... .+||+|++........ ....+++.+.++|+||
T Consensus 60 --~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG----- 132 (191)
T 3dou_A 60 --EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG----- 132 (191)
T ss_dssp --CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-----
T ss_pred --cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC-----
Confidence 0224666666655421100 0 0011 4899999854322111 1356778888999998
Q ss_pred CceEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeeecCC
Q 023457 218 KKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKAKS 274 (282)
Q Consensus 218 ~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~~~ 274 (282)
|.+++... +. .....+...++..|.--.+. .|.........+|.+-+..+.
T Consensus 133 -G~lv~k~~--~~-~~~~~~~~~l~~~F~~v~~~--kP~asR~~s~E~y~v~~~~~~ 183 (191)
T 3dou_A 133 -GNVLLKQF--QG-DMTNDFIAIWRKNFSSYKIS--KPPASRGSSSEIYIMFFGFKA 183 (191)
T ss_dssp -EEEEEEEE--CS-THHHHHHHHHGGGEEEEEEE--CC------CCEEEEEEEEECC
T ss_pred -CEEEEEEc--CC-CCHHHHHHHHHHhcCEEEEE--CCCCccCCCceEEEEEeeecc
Confidence 56554332 22 23456777777666433333 233222233456776665443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.9e-10 Score=96.95 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=71.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc-
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF- 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f- 183 (282)
+.+|||||||+|..++.++...+.+|+++|+ +.+++.+++|+..++. .+++.+...||.+ .+ ..+|
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-----~~~v~~~~~D~~~----~~---~~~f~ 191 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLE----PF---KEKFA 191 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTG----GG---GGGTT
T ss_pred CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcchh----hc---ccccC
Confidence 5699999999999999998663579999999 9999999999998874 3457887766654 11 1368
Q ss_pred --cEEEEcCccCC-----------CC--------CHHHHHHHHH-HHHhcC
Q 023457 184 --DVILASDVVYH-----------DH--------LFDPLLVTLR-LFLNSG 212 (282)
Q Consensus 184 --D~Ii~sd~ly~-----------~~--------~~~~ll~~l~-~ll~~g 212 (282)
|+|+++.+... .+ +-..+++.+. +.++||
T Consensus 192 ~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pg 242 (284)
T 1nv8_A 192 SIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG 242 (284)
T ss_dssp TCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred CCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence 99999743221 11 1126788888 888887
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=92.34 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=75.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++++..++.... ...++.+...|...... ...
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~-~~~ 157 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL-KIDNFKIIHKNIYQVNE-EEK 157 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG-SSTTEEEEECCGGGCCH-HHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc-ccCCEEEEECChHhccc-ccC
Confidence 478999999999999999987654 59999999 9999999999987652000 02356666655443110 000
Q ss_pred hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 178 VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
....+||+|++..++.+ +++.+.++|+|| |.+++...
T Consensus 158 ~~~~~fD~I~~~~~~~~------~~~~~~~~Lkpg------G~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASE------LPEILVDLLAEN------GKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSS------CCHHHHHHEEEE------EEEEEEEE
T ss_pred ccCCCcCEEEECCchHH------HHHHHHHhcCCC------cEEEEEEc
Confidence 12467999999887764 357788999998 56555544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=98.76 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=73.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|.. +.+|+++|+ +.+++.+++|+..|+. . ++.+...|..+.. ..+.....+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~-----~-~~~~~~~d~~~~~-~~~~~~~~~f 280 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL-----G-NVRVLEANAFDLL-RRLEKEGERF 280 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC-----T-TEEEEESCHHHHH-HHHHHTTCCE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-----C-CceEEECCHHHHH-HHHHhcCCCe
Confidence 4779999999999999999866 789999999 9999999999999984 2 3555554332200 0011114689
Q ss_pred cEEEEcCccCCC---------CCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHD---------HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g 212 (282)
|+|++..+.+.. ..+..++..+.++|+||
T Consensus 281 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 318 (382)
T 1wxx_A 281 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG 318 (382)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred eEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999986554432 23567888899999998
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-09 Score=91.31 Aligned_cols=99 Identities=13% Similarity=-0.014 Sum_probs=70.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+|||||||+|.+++.++ .+.+|+++|+ +.+++.+++++..++. ...+...|... ..+..+|
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~-------~~~~~v~D~~~------~~~~~~~ 169 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW-------DFTFALQDVLC------APPAEAG 169 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC-------EEEEEECCTTT------SCCCCBC
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC-------CceEEEeeccc------CCCCCCc
Confidence 46799999999999999886 6689999999 9999999999988763 34445444332 1124689
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
|+|++..++++-+. ...++ .+...|+++ ++++-++
T Consensus 170 DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~-------~vvVsfP 206 (253)
T 3frh_A 170 DLALIFKLLPLLEREQAGSAM-ALLQSLNTP-------RMAVSFP 206 (253)
T ss_dssp SEEEEESCHHHHHHHSTTHHH-HHHHHCBCS-------EEEEEEE
T ss_pred chHHHHHHHHHhhhhchhhHH-HHHHHhcCC-------CEEEEcC
Confidence 99999988775322 22333 454566665 5555554
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.8e-09 Score=85.71 Aligned_cols=132 Identities=16% Similarity=0.079 Sum_probs=80.3
Q ss_pred hHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 77 AATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
++..|.+.+..... ..++.+|||||||+|..++.++...+ .+|+++|+ +.. .
T Consensus 6 ~~~kl~~~~~~~~~------------~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~- 61 (201)
T 2plw_A 6 AAYKLIELDNKYLF------------LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P- 61 (201)
T ss_dssp THHHHHHHHHHHCC------------CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-
T ss_pred HHHHHHHHHHHcCC------------CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-
Confidence 55666776655431 23477999999999999999987764 79999999 521 0
Q ss_pred ccccCCCcEEEEEEEeCCCCc------------------cchh--hcCCCccEEEEcCccCCCC----CH-------HHH
Q 023457 153 LISLRGGSVHVAPLRWGEAEA------------------NDVA--VVGREFDVILASDVVYHDH----LF-------DPL 201 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~------------------~~~~--~~~~~fD~Ii~sd~ly~~~----~~-------~~l 201 (282)
..++.+...|+.+... ..+. ....+||+|++..+++... +. ..+
T Consensus 62 -----~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~ 136 (201)
T 2plw_A 62 -----IPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSI 136 (201)
T ss_dssp -----CTTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred -----CCCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHH
Confidence 1234555555443210 0000 1246899999976655431 11 237
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCc
Q 023457 202 LVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFD 246 (282)
Q Consensus 202 l~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ 246 (282)
++.+.++|+|| |.+++.... ......+...+...|.
T Consensus 137 l~~~~~~Lkpg------G~lv~~~~~---~~~~~~l~~~l~~~f~ 172 (201)
T 2plw_A 137 THFMEQYINIG------GTYIVKMYL---GSQTNNLKTYLKGMFQ 172 (201)
T ss_dssp HHHHHHHEEEE------EEEEEEEEC---STTHHHHHHHHHTTEE
T ss_pred HHHHHHHccCC------CEEEEEEeC---CCCHHHHHHHHHHHHh
Confidence 88899999998 565543322 1234555666655554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=97.96 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=79.3
Q ss_pred CcEEEeCCCCCHHHHHHHHHh-CCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 107 LNILELGSGTGLVGMAAAAIL-GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~-~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
.+|||+|||+|..+..++... ..+++++|++.+++.+++++..++. ..++.+...|+.+ .+ ...||+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~~---~~~~D~ 236 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLA-----GERVSLVGGDMLQ----EV---PSNGDI 236 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHH-----TTSEEEEESCTTT----CC---CSSCSE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCC-----CCcEEEecCCCCC----CC---CCCCCE
Confidence 799999999999999998765 3699999998889999988876553 3467777766544 11 357999
Q ss_pred EEEcCccCCCCCH--HHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 186 ILASDVVYHDHLF--DPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 186 Ii~sd~ly~~~~~--~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|++..++++.... ..+++.+.++|+|| |.+++.
T Consensus 237 v~~~~vl~~~~~~~~~~~l~~~~~~L~pg------G~l~i~ 271 (334)
T 2ip2_A 237 YLLSRIIGDLDEAASLRLLGNCREAMAGD------GRVVVI 271 (334)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHHHSCTT------CEEEEE
T ss_pred EEEchhccCCCHHHHHHHHHHHHHhcCCC------CEEEEE
Confidence 9999999865544 48999999999998 565554
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.9e-10 Score=94.55 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=73.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC-
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG- 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~- 180 (282)
++++|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++. ..++.+...+..+. ...+....
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~-l~~l~~~~~ 145 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----AEKISLRLGPALAT-LEQLTQGKP 145 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHH-HHHHHTSSS
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHH-HHHHHhcCC
Confidence 36799999999999999998665 369999999 9999999999987764 33566665433210 00111112
Q ss_pred -CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 -REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 -~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|++... ...+..+++.+.++|+||
T Consensus 146 ~~~fD~V~~d~~---~~~~~~~l~~~~~~Lkpg 175 (232)
T 3cbg_A 146 LPEFDLIFIDAD---KRNYPRYYEIGLNLLRRG 175 (232)
T ss_dssp CCCEEEEEECSC---GGGHHHHHHHHHHTEEEE
T ss_pred CCCcCEEEECCC---HHHHHHHHHHHHHHcCCC
Confidence 68999997543 356788999999999998
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-09 Score=87.78 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=59.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.++.....+|+++|+ +.+++.+++|+. ++.+...|..+ + ...|
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~~-----~---~~~~ 111 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSE-----I---SGKY 111 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGG-----C---CCCE
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHHH-----C---CCCe
Confidence 47799999999999999998653458999999 999999988764 23444433322 2 2689
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHH
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFL 209 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll 209 (282)
|+|+++.++++... ...+++.+.+++
T Consensus 112 D~v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 112 DTWIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp EEEEECCCC-------CHHHHHHHHHHE
T ss_pred eEEEECCCchhccCchhHHHHHHHHHhc
Confidence 99999988776543 234555555555
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=91.47 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=70.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~ 179 (282)
.++.+|||||||+|..++.+|...+ ..|+++|+ +.+++.+++++............++.+...|... .++ ..
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~----~l~~~~~ 120 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMK----HLPNFFY 120 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTT----CHHHHCC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHH----hhhhhCC
Confidence 3466899999999999999986653 68999999 9999999988764210000012456766655433 122 22
Q ss_pred CCCccEEEEcCccCCCC--------CHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDH--------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~g 212 (282)
...||.|++...--+.. ....+++.+.++|+||
T Consensus 121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG 161 (235)
T 3ckk_A 121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG 161 (235)
T ss_dssp TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEE
T ss_pred CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence 56899998753221111 1257999999999998
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.2e-09 Score=90.62 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=77.9
Q ss_pred CCcEEEeCCCC---CHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch----
Q 023457 106 QLNILELGSGT---GLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV---- 176 (282)
Q Consensus 106 g~~VLELGcGt---G~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~---- 176 (282)
..+|||||||+ |.....++... +.+|+++|+ +.|++.+++++.. ..++.+...|..+. ...
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~v~~~~~D~~~~--~~~~~~~ 147 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--------DPNTAVFTADVRDP--EYILNHP 147 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--------CTTEEEEECCTTCH--HHHHHSH
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--------CCCeEEEEeeCCCc--hhhhccc
Confidence 46999999999 98876665443 479999999 9999999988743 23677777665541 100
Q ss_pred ---hhc-CCCccEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 177 ---AVV-GREFDVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 177 ---~~~-~~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
... ..+||+|+++.++++..+ ...+++.+.++|+|| |.+++...
T Consensus 148 ~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG------G~l~i~~~ 197 (274)
T 2qe6_A 148 DVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG------SYLFMTSL 197 (274)
T ss_dssp HHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT------CEEEEEEE
T ss_pred hhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC------cEEEEEEe
Confidence 011 247999999999998665 899999999999998 56555443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.6e-09 Score=93.68 Aligned_cols=151 Identities=11% Similarity=-0.024 Sum_probs=94.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
++.+|||+|||+|...+.++.... .+|+++|+ +.+++.++.|+..++. ++.+...|+...
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------~~~i~~~D~l~~------ 196 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLLHQDGLAN------ 196 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCTTSC------
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------CceEEECCCCCc------
Confidence 467999999999999999986654 68999999 9999999999987763 234444333221
Q ss_pred hcCCCccEEEEcCccCCCCC-----------------H-HHHHHHHHHHHhcCCCCCCCceEEEEEEeec-CcccHHHHH
Q 023457 178 VVGREFDVILASDVVYHDHL-----------------F-DPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR-RWKKDSVFF 238 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~~-----------------~-~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~-~~~~~~~f~ 238 (282)
....+||+|+++.++.+... . ..++..+.++|+++ |.++++++..- +......+.
T Consensus 197 ~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~g------G~~~~v~p~~~~~~~~~~~ir 270 (344)
T 2f8l_A 197 LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG------GYLFFLVPDAMFGTSDFAKVD 270 (344)
T ss_dssp CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE------EEEEEEEEGGGGGSTTHHHHH
T ss_pred cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCC------CEEEEEECchhcCCchHHHHH
Confidence 12468999999988532211 1 25788888999998 67777664321 111234444
Q ss_pred HHHhh-cCceEEEcccC-CCCCcccceEEEEEeeecCC
Q 023457 239 KKAKK-LFDVETIHADL-PCNGARVGVVVYRMTGKAKS 274 (282)
Q Consensus 239 ~~~~~-~f~ve~v~~~~-~~~~~~~~~~v~~~~~~~~~ 274 (282)
+.+.+ ++....+.... .+...+....++.+.|++..
T Consensus 271 ~~l~~~~~~~~ii~lp~~~F~~~~~~~~i~vl~k~~~~ 308 (344)
T 2f8l_A 271 KFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADVD 308 (344)
T ss_dssp HHHHHHEEEEEEEECCGGGSCC-CCCEEEEEEEECCTT
T ss_pred HHHHhCCeEEEeeeCChhhccCCCCceEEEEEECCCCC
Confidence 44433 33222232221 22233455667777776543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=94.08 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=80.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.++.+|||+|||+|.+++.++... +.+|+++|+ +.+++.+++|+..+ +. ...++.+...|..+ ....
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~----~~~~v~~~~~d~~~-----~~~~ 168 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ----PPDNWRLVVSDLAD-----SELP 168 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS----CCTTEEEECSCGGG-----CCCC
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC----CCCcEEEEECchHh-----cCCC
Confidence 457899999999999999998654 479999999 99999999999876 31 02356665544433 1112
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
...||+|++. ......+++.+.++|+|| |.+++.... ......+...+.
T Consensus 169 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~pg------G~l~~~~~~---~~~~~~~~~~l~ 217 (280)
T 1i9g_A 169 DGSVDRAVLD-----MLAPWEVLDAVSRLLVAG------GVLMVYVAT---VTQLSRIVEALR 217 (280)
T ss_dssp TTCEEEEEEE-----SSCGGGGHHHHHHHEEEE------EEEEEEESS---HHHHHHHHHHHH
T ss_pred CCceeEEEEC-----CcCHHHHHHHHHHhCCCC------CEEEEEeCC---HHHHHHHHHHHH
Confidence 4679999983 235568899999999998 555554432 223344444444
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.97 E-value=4.3e-09 Score=90.29 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhccccccc--CCCcEEEEEEEeCCCCccchh--h
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISL--RGGSVHVAPLRWGEAEANDVA--V 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~--~~~~v~~~~ld~~~~~~~~~~--~ 178 (282)
++.+|||||||+|..++.+|...+ ..|+++|+ +.+++.+++|+..+...... ...++.+...|..+. ++ .
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~----l~~~~ 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF----LPNFF 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC----GGGTS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH----HHHhc
Confidence 577999999999999999987664 58999999 99999999998876211000 023566666554431 22 1
Q ss_pred cCCCccEEEEcC--ccCCCC------CHHHHHHHHHHHHhcC
Q 023457 179 VGREFDVILASD--VVYHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~sd--~ly~~~------~~~~ll~~l~~ll~~g 212 (282)
....+|.|+... ..+... ....+++.+.++|+||
T Consensus 125 ~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg 166 (246)
T 2vdv_E 125 EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG 166 (246)
T ss_dssp CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEE
T ss_pred cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCC
Confidence 246789888642 221110 1258999999999998
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.3e-09 Score=94.97 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=83.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|..++.++.... ++|+++|+ +.+++.++.|+..++. ..++.+...|..+ ++.....
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----~~~i~~~~~D~~~-----~~~~~~~ 286 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV-----LDKIKFIQGDATQ-----LSQYVDS 286 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC-----GGGCEEEECCGGG-----GGGTCSC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhh-----CCcccCC
Confidence 477999999999999999985543 39999999 9999999999998874 3456666655443 3333468
Q ss_pred ccEEEEcCccCCC----CC----HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEE
Q 023457 183 FDVILASDVVYHD----HL----FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETI 250 (282)
Q Consensus 183 fD~Ii~sd~ly~~----~~----~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v 250 (282)
||+|+++.++... .. +..+++.+.+++ + |+.+++... ...+.+.+. .||.+...
T Consensus 287 fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~------g~~~~i~~~------~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 287 VDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--E------KRGVFITTE------KKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp EEEEEEECCCC------CCHHHHHHHHHHHHHHHE--E------EEEEEEESC------HHHHHHHHHHTTEEEEEE
T ss_pred cCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--C------CeEEEEECC------HHHHHHHHHHcCCEEEEE
Confidence 9999997664321 12 356777777777 3 365665432 233333443 47776543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=91.18 Aligned_cols=106 Identities=9% Similarity=-0.026 Sum_probs=69.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..+..++... +.+|+++|+ +.+++.+.++...+.... ...++.+...|..+ ++.....
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~--~~~~v~~~~~d~~~-----l~~~~~~ 99 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKG--GLPNLLYLWATAER-----LPPLSGV 99 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGT--CCTTEEEEECCSTT-----CCSCCCE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhc--CCCceEEEecchhh-----CCCCCCC
Confidence 47799999999999999998765 579999999 888886554443321110 12357776655544 2222233
Q ss_pred ccEEEEcCc---cC--CCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 183 FDVILASDV---VY--HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 183 fD~Ii~sd~---ly--~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|.|+..-. .+ +..+...+++.+.++|+|| |.+++.
T Consensus 100 -d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~ 139 (218)
T 3mq2_A 100 -GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPG------ASFLVA 139 (218)
T ss_dssp -EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEE------EEEEEE
T ss_pred -CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCC------cEEEEE
Confidence 66663211 11 3334478999999999998 565553
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-09 Score=88.92 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=73.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++++..++.... ...++.+...|... .....
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~-----~~~~~ 149 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-SSGRVQLVVGDGRM-----GYAEE 149 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-HTSSEEEEESCGGG-----CCGGG
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc-CCCcEEEEECCccc-----CcccC
Confidence 3578999999999999999987654 69999999 9999999999887542000 02356666654432 11124
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.+||+|++..++.+ +++.+.++|+|| |.+++..
T Consensus 150 ~~fD~i~~~~~~~~------~~~~~~~~Lkpg------G~lv~~~ 182 (226)
T 1i1n_A 150 APYDAIHVGAAAPV------VPQALIDQLKPG------GRLILPV 182 (226)
T ss_dssp CCEEEEEECSBBSS------CCHHHHHTEEEE------EEEEEEE
T ss_pred CCcCEEEECCchHH------HHHHHHHhcCCC------cEEEEEE
Confidence 57999999877643 346788999998 5555544
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.1e-09 Score=94.00 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=68.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhc-------ccccccCCCcEEEEEEEeCCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDAN-------AGLISLRGGSVHVAPLRWGEAEA 173 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n-------~~~~~~~~~~v~~~~ld~~~~~~ 173 (282)
.++.+|||+|||+|.+++.++...+ .+|+++|+ +.+++.+++|+... +.. ....++.+...|..+..
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~--~~~~~v~~~~~d~~~~~- 180 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE--EWPDNVDFIHKDISGAT- 180 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS--CCCCCEEEEESCTTCCC-
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc--ccCCceEEEECChHHcc-
Confidence 3578999999999999999987654 79999999 99999999998852 210 01235666665544310
Q ss_pred cchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 174 NDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 174 ~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.......||+|++... ....++..+.++|+||
T Consensus 181 --~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~Lkpg 212 (336)
T 2b25_A 181 --EDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHG 212 (336)
T ss_dssp ---------EEEEEECSS-----STTTTHHHHGGGEEEE
T ss_pred --cccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCC
Confidence 0112357999998532 2233788899999998
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=92.68 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=84.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhc--ccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDAN--AGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n--~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+++|||||||+|.++..+++.. ..+|+++|+ +.+++.+++++... +. ...++.+..-|... .+....
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~----~~~rv~v~~~D~~~----~l~~~~ 146 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL----DDPRVDVQVDDGFM----HIAKSE 146 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT----TSTTEEEEESCSHH----HHHTCC
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHH----HHhhCC
Confidence 36799999999999999998553 479999999 99999999987542 21 13466666533221 122234
Q ss_pred CCccEEEEcCccCCCC-----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec--CcccHHHHHHHHhhcCceEE
Q 023457 181 REFDVILASDVVYHDH-----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR--RWKKDSVFFKKAKKLFDVET 249 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~--~~~~~~~f~~~~~~~f~ve~ 249 (282)
.+||+|++ |+.+... ....+++.+.++|+|| |.+ ++..... .........+.+++.|....
T Consensus 147 ~~fD~Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L~pg------G~l-v~~~~~~~~~~~~~~~~~~~l~~~F~~v~ 214 (275)
T 1iy9_A 147 NQYDVIMV-DSTEPVGPAVNLFTKGFYAGIAKALKED------GIF-VAQTDNPWFTPELITNVQRDVKEIFPITK 214 (275)
T ss_dssp SCEEEEEE-SCSSCCSCCCCCSTTHHHHHHHHHEEEE------EEE-EEECCCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred CCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCC------cEE-EEEcCCccccHHHHHHHHHHHHHhCCCeE
Confidence 68999998 4443211 1367899999999998 443 3332211 12224555666667775443
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-09 Score=88.51 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=73.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
.++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++++..++...- ...++.+...|..+ .
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~----~ 157 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-DSGQLLIVEGDGRK----G 157 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-HHTSEEEEESCGGG----C
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc-CCCceEEEECCccc----C
Confidence 3477999999999999999987554 59999999 9999999999876541000 01245665544433 1
Q ss_pred hhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 176 VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 176 ~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
++ ...+||+|++..++++. .+.+.++|+|| |.+++.+
T Consensus 158 ~~-~~~~fD~I~~~~~~~~~------~~~~~~~Lkpg------G~lvi~~ 194 (227)
T 1r18_A 158 YP-PNAPYNAIHVGAAAPDT------PTELINQLASG------GRLIVPV 194 (227)
T ss_dssp CG-GGCSEEEEEECSCBSSC------CHHHHHTEEEE------EEEEEEE
T ss_pred CC-cCCCccEEEECCchHHH------HHHHHHHhcCC------CEEEEEE
Confidence 11 12679999998887653 36788899998 5555544
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-09 Score=92.87 Aligned_cols=133 Identities=9% Similarity=-0.031 Sum_probs=83.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--cC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--VG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--~~ 180 (282)
++++|||||||+|..+..+++.. ..+|+++|+ +.+++.+++++....... ...++.+...|... +.. ..
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~--~~~~v~~~~~D~~~-----~~~~~~~ 167 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSL--ADPRATVRVGDGLA-----FVRQTPD 167 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--GCTTEEEEESCHHH-----HHHSSCT
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhccc--CCCcEEEEECcHHH-----HHHhccC
Confidence 46799999999999999998553 369999999 999999999874311000 13467766644332 211 25
Q ss_pred CCccEEEEcCccCCCCCH----HHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc--ccHHHHHHHHhh-cCceEEEc
Q 023457 181 REFDVILASDVVYHDHLF----DPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW--KKDSVFFKKAKK-LFDVETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~----~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~--~~~~~f~~~~~~-~f~ve~v~ 251 (282)
.+||+|++....+..... ..+++.+.++|+|| |.+++. ...... .....+.+.+++ ||....+.
T Consensus 168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg------G~lv~~-~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD------GICCNQ-GESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp TCEEEEEEECC---------CCHHHHHHHHHHEEEE------EEEEEE-ECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC------cEEEEe-cCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 689999995443321111 68899999999998 454443 222111 234556666655 69754443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=93.26 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=76.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-C---
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-G--- 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~--- 180 (282)
+.+|||+|||+|..++.+|. .+.+|+++|+ +.+++.+++|+..|+. .++.+...|..+ .+... .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~d~~~----~~~~~~~~~~ 282 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI------DNVQIIRMAAEE----FTQAMNGVRE 282 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC------CSEEEECCCSHH----HHHHHSSCCC
T ss_pred CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECCHHH----HHHHHhhccc
Confidence 56899999999999999874 5689999999 9999999999999874 245555433221 11111 1
Q ss_pred -----------CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEE
Q 023457 181 -----------REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVET 249 (282)
Q Consensus 181 -----------~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~ 249 (282)
..||+|+...+-. .. ...+.++++++ |+++++.+. +.....=+..+..+|.++.
T Consensus 283 ~~~l~~~~~~~~~fD~Vv~dPPr~--g~----~~~~~~~l~~~------g~ivyvsc~---p~t~ard~~~l~~~y~~~~ 347 (369)
T 3bt7_A 283 FNRLQGIDLKSYQCETIFVDPPRS--GL----DSETEKMVQAY------PRILYISCN---PETLCKNLETLSQTHKVER 347 (369)
T ss_dssp CTTGGGSCGGGCCEEEEEECCCTT--CC----CHHHHHHHTTS------SEEEEEESC---HHHHHHHHHHHHHHEEEEE
T ss_pred cccccccccccCCCCEEEECcCcc--cc----HHHHHHHHhCC------CEEEEEECC---HHHHHHHHHHHhhCcEEEE
Confidence 3799999854422 12 23344455565 577776653 2222222222234688876
Q ss_pred Ec
Q 023457 250 IH 251 (282)
Q Consensus 250 v~ 251 (282)
+.
T Consensus 348 ~~ 349 (369)
T 3bt7_A 348 LA 349 (369)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-08 Score=92.90 Aligned_cols=123 Identities=14% Similarity=0.117 Sum_probs=84.7
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
.-.++..++..|... ..++.+|||+|||+|..++.+|...+ +.|+++|+ +.+++.+++|+..+
T Consensus 100 Qd~~s~l~~~~L~~~--------------~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~ 165 (479)
T 2frx_A 100 QEASSMLPVAALFAD--------------GNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC 165 (479)
T ss_dssp CCHHHHHHHHHHTTT--------------TCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHhCcc--------------cCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 345667777766321 11478999999999999999987653 79999999 99999999999987
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhh-cCCCccEEEEcCc------cCCCCC----------------HHHHHHHHHH
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAV-VGREFDVILASDV------VYHDHL----------------FDPLLVTLRL 207 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~~fD~Ii~sd~------ly~~~~----------------~~~ll~~l~~ 207 (282)
+. .++.+...|.. .+.. ....||+|++..+ +...++ ...+++.+.+
T Consensus 166 g~------~nv~~~~~D~~-----~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~ 234 (479)
T 2frx_A 166 GI------SNVALTHFDGR-----VFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFH 234 (479)
T ss_dssp TC------CSEEEECCCST-----THHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CcEEEEeCCHH-----HhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHH
Confidence 74 24555543332 2322 3468999998322 221111 2468888999
Q ss_pred HHhcCCCCCCCceEEEEEEe
Q 023457 208 FLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 208 ll~~g~~~~~~g~~~il~~~ 227 (282)
+|+|| |.+++..+.
T Consensus 235 ~LkpG------G~LvysTcs 248 (479)
T 2frx_A 235 ALRPG------GTLVYSTCT 248 (479)
T ss_dssp HEEEE------EEEEEEESC
T ss_pred hcCCC------CEEEEeccc
Confidence 99998 666665444
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=96.12 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=83.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHh--cccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDA--NAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~--n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+++|||||||+|..++.+++.. ..+|+++|+ +.+++.+++|+.. ++. ...++.+...|+.+ .+.....
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~----~~~~v~~~~~D~~~----~l~~~~~ 188 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY----EDKRVNVFIEDASK----FLENVTN 188 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG----GSTTEEEEESCHHH----HHHHCCS
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----CCCcEEEEEccHHH----HHhhcCC
Confidence 5799999999999999998553 479999999 9999999998765 221 13467766644322 1222256
Q ss_pred CccEEEEcCc--cCCCCC-H-HHHHHHHHHHHhcCCCCCCCceEEEEEEeec--CcccHHHHHHHHhhcCceE
Q 023457 182 EFDVILASDV--VYHDHL-F-DPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR--RWKKDSVFFKKAKKLFDVE 248 (282)
Q Consensus 182 ~fD~Ii~sd~--ly~~~~-~-~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~--~~~~~~~f~~~~~~~f~ve 248 (282)
+||+|++... +..... . ..+++.+.++|+|| |.+++. .... .......+.+.+++.|...
T Consensus 189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg------G~lv~~-~~~~~~~~~~~~~~~~~l~~~F~~v 254 (321)
T 2pt6_A 189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN------GYCVAQ-CESLWIHVGTIKNMIGYAKKLFKKV 254 (321)
T ss_dssp CEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEE------EEEEEE-ECCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred CceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCC------cEEEEE-cCCcccCHHHHHHHHHHHHHHCCCe
Confidence 8999998432 111111 1 78999999999998 444443 2222 1123456666666667543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.7e-09 Score=90.75 Aligned_cols=132 Identities=15% Similarity=0.032 Sum_probs=81.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccccc-----ccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLI-----SLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~-----~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
.+++|||||||+|..+..+++....+|+++|+ +.+++.+++++ ...... .....++.+...|..+ .+..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~----~l~~ 149 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE----FIKN 149 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH----HHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH----Hhcc
Confidence 36799999999999999998663369999999 99999999987 321000 0013456665533211 1222
Q ss_pred cCCCccEEEEcCccCCC---CC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEee-cCcccHHHHHHHHhhcCceEE
Q 023457 179 VGREFDVILASDVVYHD---HL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL-RRWKKDSVFFKKAKKLFDVET 249 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~---~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~-~~~~~~~~f~~~~~~~f~ve~ 249 (282)
..+||+|++. ..+.. .. ...+++.+.++|+|| |.+++..... ..........+.+...|....
T Consensus 150 -~~~fD~Ii~d-~~~~~~~~~~l~~~~~l~~~~~~L~pg------G~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~ 218 (281)
T 1mjf_A 150 -NRGFDVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNP------GIYVTQAGSVYLFTDELISAYKEMKKVFDRVY 218 (281)
T ss_dssp -CCCEEEEEEE-CCCCC-----TTSHHHHHHHHHHEEEE------EEEEEEEEETTTSHHHHHHHHHHHHHHCSEEE
T ss_pred -cCCeeEEEEC-CCCCCCcchhhhHHHHHHHHHHhcCCC------cEEEEEcCCcccCHHHHHHHHHHHHHHCCceE
Confidence 5689999984 33211 11 367899999999998 4544432221 122223455555656675433
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-09 Score=93.60 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=83.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++++|||||||+|..+..+++.. ..+|+++|+ +.+++.+++++..++... ...++.+...|... .+.....+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~--~~~~v~~~~~D~~~----~l~~~~~~ 151 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY--EDKRVNVFIEDASK----FLENVTNT 151 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG--GSTTEEEEESCHHH----HHHHCCSC
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcccc--CCCcEEEEECChHH----HHHhCCCC
Confidence 46799999999999999998554 379999999 999999999876432110 13466666543322 12222568
Q ss_pred ccEEEEc--CccCCCCCH--HHHHHHHHHHHhcCCCCCCCceEEEEEEeec--CcccHHHHHHHHhhcCce
Q 023457 183 FDVILAS--DVVYHDHLF--DPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR--RWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 183 fD~Ii~s--d~ly~~~~~--~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~--~~~~~~~f~~~~~~~f~v 247 (282)
||+|++. +.+...... ..+++.+.++|+|| |.+ ++..... .......+.+.+++.|..
T Consensus 152 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg------G~l-v~~~~~~~~~~~~~~~~~~~l~~~F~~ 215 (283)
T 2i7c_A 152 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN------GYC-VAQCESLWIHVGTIKNMIGYAKKLFKK 215 (283)
T ss_dssp EEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE------EEE-EEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred ceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC------cEE-EEECCCcccCHHHHHHHHHHHHHHCCc
Confidence 9999983 222111122 68999999999998 444 3332211 112245566666777764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=98.61 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=74.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..+++..+ .+++++|++.++. ++++...+ ...++.+...|+.+ .+ . .
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~-----~~~~v~~~~~d~~~----~~---p-~ 247 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPD-----VAGRWKVVEGDFLR----EV---P-H 247 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGG-----GTTSEEEEECCTTT----CC---C-C
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccC-----CCCCeEEEecCCCC----CC---C-C
Confidence 3477999999999999999987664 5899999965554 32222222 14568888766542 11 2 7
Q ss_pred ccEEEEcCccCCCCCH--HHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLF--DPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~--~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++..++|+..+. ..+++.+.++|+|| |.++++-
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkpg------G~l~i~e 286 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAH------GRVLVID 286 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTT------CEEEEEE
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCC------CEEEEEE
Confidence 9999999999987766 69999999999998 5655543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.6e-09 Score=91.60 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=84.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHh-cccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDA-NAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~-n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+++|||||||+|..+..+++.. ..+|+++|+ +.+++.+++++.. |.... ...++.+...|... .+.....
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~--~~~~v~~~~~D~~~----~l~~~~~ 150 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF--DDPRAVLVIDDARA----YLERTEE 150 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG--GCTTEEEEESCHHH----HHHHCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc--cCCceEEEEchHHH----HHHhcCC
Confidence 35799999999999999998653 469999999 9999999998754 21000 13466666543322 1222356
Q ss_pred CccEEEEcCccCC---C--CC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEee--cCcccHHHHHHHHhhcCce
Q 023457 182 EFDVILASDVVYH---D--HL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL--RRWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 182 ~fD~Ii~sd~ly~---~--~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~--~~~~~~~~f~~~~~~~f~v 247 (282)
+||+|++...... . .. ...+++.+.++|+|| |.+++..... .+........+.++.-|..
T Consensus 151 ~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg------G~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~ 219 (314)
T 1uir_A 151 RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG------GVMGMQTGMILLTHHRVHPVVHRTVREAFRY 219 (314)
T ss_dssp CEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE------EEEEEEEEEECC---CHHHHHHHHHHTTCSE
T ss_pred CccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCC------cEEEEEccCccccCHHHHHHHHHHHHHHCCc
Confidence 8999999543322 1 01 478899999999998 5555443221 1122345566666666754
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-09 Score=92.25 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=81.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHh--cccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDA--NAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~--n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+++|||||||+|..+..+++.. ..+|+++|+ +.+++.+++|+.. ++. ...++.+...|... .+.....
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~----~~~~v~~~~~D~~~----~l~~~~~ 162 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF----DDPRAEIVIANGAE----YVRKFKN 162 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHH----HGGGCSS
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHH----HHhhCCC
Confidence 5799999999999999998653 479999999 9999999998754 221 13466666544322 1122246
Q ss_pred CccEEEEcCccCC-CC-----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee-cCcccHHHHHHHHhhcCce
Q 023457 182 EFDVILASDVVYH-DH-----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL-RRWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 182 ~fD~Ii~sd~ly~-~~-----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~-~~~~~~~~f~~~~~~~f~v 247 (282)
+||+|++. +... .. ....+++.+.++|+|| |.+++..... ..........+.+.+.|..
T Consensus 163 ~fD~Ii~d-~~~~~~~~~~~l~~~~~l~~~~~~Lkpg------G~lv~~~~~~~~~~~~~~~~~~~l~~~F~~ 228 (296)
T 1inl_A 163 EFDVIIID-STDPTAGQGGHLFTEEFYQACYDALKED------GVFSAETEDPFYDIGWFKLAYRRISKVFPI 228 (296)
T ss_dssp CEEEEEEE-C----------CCSHHHHHHHHHHEEEE------EEEEEECCCTTTTHHHHHHHHHHHHHHCSE
T ss_pred CceEEEEc-CCCcccCchhhhhHHHHHHHHHHhcCCC------cEEEEEccCcccCHHHHHHHHHHHHHHCCc
Confidence 79999973 2211 11 2368899999999998 4444432111 1122245556666666754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-08 Score=81.32 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC----------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEE-EEEeCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG----------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVA-PLRWGEA 171 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~----------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~-~ld~~~~ 171 (282)
.++.+|||||||+|..++.+++..+ .+|+++|+ +.. . ..++.+. ..|+...
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~------~~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P------LEGATFLCPADVTDP 83 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C------CTTCEEECSCCTTSH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c------CCCCeEEEeccCCCH
Confidence 3478999999999999999997754 78999999 521 0 1123333 3332220
Q ss_pred Cccc-h-h-hcCCCccEEEEcCccCCCCC----H-------HHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHH
Q 023457 172 EAND-V-A-VVGREFDVILASDVVYHDHL----F-------DPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVF 237 (282)
Q Consensus 172 ~~~~-~-~-~~~~~fD~Ii~sd~ly~~~~----~-------~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f 237 (282)
.... . . ....+||+|++...++.... . ..+++.+.++|+|| |.+++.... ......+
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~lv~~~~~---~~~~~~~ 154 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG------GTFLCKTWA---GSQSRRL 154 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE------EEEEEEECC---SGGGHHH
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC------CEEEEEecC---CccHHHH
Confidence 0000 0 0 11347999999654433221 1 47889999999998 555443321 1234556
Q ss_pred HHHHhhcCc
Q 023457 238 FKKAKKLFD 246 (282)
Q Consensus 238 ~~~~~~~f~ 246 (282)
...+...|.
T Consensus 155 ~~~l~~~f~ 163 (196)
T 2nyu_A 155 QRRLTEEFQ 163 (196)
T ss_dssp HHHHHHHEE
T ss_pred HHHHHHHhc
Confidence 666655553
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-09 Score=91.11 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=67.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..+..++... +.+|+++|+ +.+++.++++.. ++.+...++.. ++....+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~~-----~~~~~~~ 148 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSHR-----LPFSDTS 148 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTS-----CSBCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcchhh-----CCCCCCc
Confidence 47799999999999999998664 579999999 999998877531 33444444332 2223468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||+|++..+. ..++.+.++|+|| |.++++..
T Consensus 149 fD~v~~~~~~-------~~l~~~~~~L~pg------G~l~~~~~ 179 (269)
T 1p91_A 149 MDAIIRIYAP-------CKAEELARVVKPG------GWVITATP 179 (269)
T ss_dssp EEEEEEESCC-------CCHHHHHHHEEEE------EEEEEEEE
T ss_pred eeEEEEeCCh-------hhHHHHHHhcCCC------cEEEEEEc
Confidence 9999987652 2478899999998 56555443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-09 Score=91.98 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=81.7
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
.+=.++..|.+.+... ...++.+|||||||+|..+..++.. ++|+++|+ + ++..++.+ .
T Consensus 63 ~~sR~a~KL~~i~~~~-------------~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~----~ 122 (276)
T 2wa2_A 63 AVSRGTAKLAWIDERG-------------GVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEK----P 122 (276)
T ss_dssp --CHHHHHHHHHHHTT-------------SCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCC----C
T ss_pred cCchHHHHHHHHHHcC-------------CCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhc----h
Confidence 4555667777777552 1235889999999999999999854 79999999 6 53222111 1
Q ss_pred cccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCH----H---HHHHHHHHHHhcCCCCCCCc--eEE
Q 023457 152 GLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLF----D---PLLVTLRLFLNSGEPEPKKK--KMN 222 (282)
Q Consensus 152 ~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~----~---~ll~~l~~ll~~g~~~~~~g--~~~ 222 (282)
........++.+.. ...+...++ ..+||+|++.-. +..... . .+++.+.++|+|| | .++
T Consensus 123 ~~~~~~~~~v~~~~---~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG------G~~~~v 190 (276)
T 2wa2_A 123 RLVETFGWNLITFK---SKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYN------QGCGFC 190 (276)
T ss_dssp CCCCCTTGGGEEEE---CSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHS------TTCEEE
T ss_pred hhhhhcCCCeEEEe---ccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccC------CCcEEE
Confidence 00000011333330 011122232 468999999655 332221 1 3688899999999 6 554
Q ss_pred EEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 223 FVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 223 il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
+-. ..........++..++..|....+.
T Consensus 191 ~~~-~~~~~~~~~~~l~~l~~~f~~v~v~ 218 (276)
T 2wa2_A 191 VKV-LNPYSCDVLEALMKMQARFGGGLIR 218 (276)
T ss_dssp EEE-SCCCSHHHHHHHHHHHHHHCCEEEC
T ss_pred EEe-CCCCchhHHHHHHHHHHHcCCEEEE
Confidence 422 2222211235666666666555444
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-09 Score=92.93 Aligned_cols=131 Identities=12% Similarity=0.012 Sum_probs=81.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHh--cccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDA--NAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~--n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+++|||||||+|..++.+++..+ .+|+++|+ +.+++.+++++.. ++. ...++.+...|..+ .+....
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~----~~~rv~v~~~Da~~----~l~~~~ 166 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY----SSSKLTLHVGDGFE----FMKQNQ 166 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHH----HHHTCS
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc----CCCcEEEEECcHHH----HHhhCC
Confidence 467999999999999999985543 79999999 9999999998765 222 13456666533211 122235
Q ss_pred CCccEEEEcCccCCCC-----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee-cCcccHHHHHHHHhhcCceEEE
Q 023457 181 REFDVILASDVVYHDH-----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL-RRWKKDSVFFKKAKKLFDVETI 250 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~-~~~~~~~~f~~~~~~~f~ve~v 250 (282)
.+||+|++. ...... ....+++.+.++|+|| |.+++-.... ..........+.++.-|....+
T Consensus 167 ~~fD~Ii~d-~~~~~~~~~~l~~~~~l~~~~~~Lkpg------G~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~ 235 (304)
T 2o07_A 167 DAFDVIITD-SSDPMGPAESLFKESYYQLMKTALKED------GVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAY 235 (304)
T ss_dssp SCEEEEEEE-CC-----------CHHHHHHHHHEEEE------EEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEC-CCCCCCcchhhhHHHHHHHHHhccCCC------eEEEEecCCcccchHHHHHHHHHHHHhCCCcee
Confidence 689999984 322111 2356899999999998 4443332111 1111234444555566754433
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.2e-09 Score=92.86 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=70.3
Q ss_pred CCcEEEeCCCCCH----HHHHHHHHhC-----CEEEEEeh-HhHHHHHHHHHHhcc------------------------
Q 023457 106 QLNILELGSGTGL----VGMAAAAILG-----AKVTVTDL-PHVLTNLQFNVDANA------------------------ 151 (282)
Q Consensus 106 g~~VLELGcGtG~----~si~la~~~~-----~~V~~tD~-~~~l~~~~~n~~~n~------------------------ 151 (282)
+.+|||+|||||- +++.++...+ .+|++||+ +.||+.+++++-...
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 5699999999998 5666665533 48999999 999999998752100
Q ss_pred cccc-cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 152 GLIS-LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 152 ~~~~-~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
..+. ....++.+...++.+. .++ ..++||+|+|..++.+.+ ....+++.+.+.|+||
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~---~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg 245 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEK---QYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 245 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCS---SCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred eeechhhcccCeEEecccCCC---CCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence 0000 0012567777666541 111 135799999998875443 3478999999999998
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-09 Score=93.89 Aligned_cols=93 Identities=19% Similarity=0.057 Sum_probs=69.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhc---------------ccccccCCCcEEEEEEEe
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDAN---------------AGLISLRGGSVHVAPLRW 168 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n---------------~~~~~~~~~~v~~~~ld~ 168 (282)
+.+|||+|||+|..++.+|+.. +.+|+++|+ +.+++.+++|++.| +. .++.+...|.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------~~i~v~~~Da 121 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------KTIVINHDDA 121 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------SEEEEEESCH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------CceEEEcCcH
Confidence 7799999999999999999774 468999999 99999999999998 42 1244444332
Q ss_pred CCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 169 GEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 169 ~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.. .+......||+|+. |+.+ ....++..+.++++++
T Consensus 122 ~~----~~~~~~~~fD~I~l-DP~~---~~~~~l~~a~~~lk~g 157 (378)
T 2dul_A 122 NR----LMAERHRYFHFIDL-DPFG---SPMEFLDTALRSAKRR 157 (378)
T ss_dssp HH----HHHHSTTCEEEEEE-CCSS---CCHHHHHHHHHHEEEE
T ss_pred HH----HHHhccCCCCEEEe-CCCC---CHHHHHHHHHHhcCCC
Confidence 22 11112357999995 6543 2367888888999997
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=92.71 Aligned_cols=96 Identities=23% Similarity=0.236 Sum_probs=70.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||+|||+|..++.+|. .+.+|+++|+ +.+++.+++|+..|+. . +.+...|..+ +. ...||
T Consensus 291 ~~~VLDlgcG~G~~sl~la~-~~~~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~d~~~-----~~--~~~fD 355 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAK-RGFNVKGFDSNEFAIEMARRNVEINNV------D-AEFEVASDRE-----VS--VKGFD 355 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHTC------C-EEEEECCTTT-----CC--CTTCS
T ss_pred CCEEEEeeccchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChHH-----cC--ccCCC
Confidence 67999999999999999985 4689999999 9999999999998874 2 5666555443 11 12799
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
+|++..+ +. ...+.+++.+.. ++|+ +++++++
T Consensus 356 ~Vv~dPP-r~-g~~~~~~~~l~~-l~p~-------givyvsc 387 (425)
T 2jjq_A 356 TVIVDPP-RA-GLHPRLVKRLNR-EKPG-------VIVYVSC 387 (425)
T ss_dssp EEEECCC-TT-CSCHHHHHHHHH-HCCS-------EEEEEES
T ss_pred EEEEcCC-cc-chHHHHHHHHHh-cCCC-------cEEEEEC
Confidence 9999654 21 233456777754 7776 6666654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-09 Score=93.59 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++... ..+|+++|++.+++.+++ ..++.+...|+.+ .+ ..|
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~v~~~~~d~~~----~~----p~~ 247 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG------------SNNLTYVGGDMFT----SI----PNA 247 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------BTTEEEEECCTTT----CC----CCC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc------------CCCcEEEeccccC----CC----CCc
Confidence 45799999999999999998765 368999999777765543 1236666655433 11 249
Q ss_pred cEEEEcCccCCCCCHH--HHHHHHHHHHhc---CCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFD--PLLVTLRLFLNS---GEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~--~ll~~l~~ll~~---g~~~~~~g~~~il~ 225 (282)
|+|+++.++++..+.. .+++.+.++|+| | |.+++.-
T Consensus 248 D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~g------G~l~i~e 288 (352)
T 1fp2_A 248 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKR------GKVTIID 288 (352)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCC------CEEEEEE
T ss_pred cEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCC------cEEEEEE
Confidence 9999999999887766 999999999999 8 5655543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=90.84 Aligned_cols=95 Identities=20% Similarity=0.163 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||||||+|..+..+++..+ .+++++|++.+++.++. ..++.+...|+.+ .+ ..|
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~v~~~~~d~~~----~~----~~~ 252 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------------NENLNFVGGDMFK----SI----PSA 252 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------------CSSEEEEECCTTT----CC----CCC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------------CCCcEEEeCccCC----CC----CCc
Confidence 356999999999999999987764 58999999777655432 1236666655443 11 259
Q ss_pred cEEEEcCccCCCCCHH--HHHHHHHHHHhc---CCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHLFD--PLLVTLRLFLNS---GEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~--~ll~~l~~ll~~---g~~~~~~g~~~il~ 225 (282)
|+|+++.++++..+.. .+++.+.+.|+| | |.++++-
T Consensus 253 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~g------G~l~i~e 293 (358)
T 1zg3_A 253 DAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKD------GKVIIID 293 (358)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGG------CEEEEEE
T ss_pred eEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCC------cEEEEEE
Confidence 9999999999887755 999999999999 8 5655543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=90.01 Aligned_cols=94 Identities=21% Similarity=0.130 Sum_probs=71.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||||||+|..+..+++..+ .+++++|++.+++.++. ..++.+...|+.+ .++ ..
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~v~~~~~d~~~----~~p---~~- 262 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA------------FSGVEHLGGDMFD----GVP---KG- 262 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------CTTEEEEECCTTT----CCC---CC-
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh------------cCCCEEEecCCCC----CCC---CC-
Confidence 467999999999999999987664 68999999777765542 2467777766544 121 23
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|+|++..++|+..+ ...+++.+.+.|+|| |.++++
T Consensus 263 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg------G~l~i~ 299 (368)
T 3reo_A 263 DAIFIKWICHDWSDEHCLKLLKNCYAALPDH------GKVIVA 299 (368)
T ss_dssp SEEEEESCGGGBCHHHHHHHHHHHHHHSCTT------CEEEEE
T ss_pred CEEEEechhhcCCHHHHHHHHHHHHHHcCCC------CEEEEE
Confidence 99999999986554 458899999999998 565554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.4e-08 Score=90.24 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=85.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||+|||+|..++.++... ..+|+++|+ +.+++.+ .++.+...|+... . ...
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~~-----~-~~~ 97 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLW-----E-PGE 97 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGC-----C-CSS
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhhc-----C-ccC
Confidence 35699999999999999998664 479999999 8776554 1345555444331 1 135
Q ss_pred CccEEEEcCccCCCCC-----------------------------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-c
Q 023457 182 EFDVILASDVVYHDHL-----------------------------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-W 231 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~-----------------------------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-~ 231 (282)
+||+|+++.+...... ...+++.+.++|+++ |.++++.....- .
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~------G~~~~i~p~~~l~~ 171 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG------GVLVFVVPATWLVL 171 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEE------EEEEEEEEGGGGTC
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCC------CEEEEEEChHHhcC
Confidence 8999999877653322 125688888999998 677777654211 1
Q ss_pred ccHHHHHHHHh-hcCceEEEcccCCCCCcccceEEEEEeee
Q 023457 232 KKDSVFFKKAK-KLFDVETIHADLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 232 ~~~~~f~~~~~-~~f~ve~v~~~~~~~~~~~~~~v~~~~~~ 271 (282)
.....+.+.+. .++ ...+.......+......++.++|.
T Consensus 172 ~~~~~lr~~l~~~~~-~~i~~l~~~F~~~~~~~~il~~~k~ 211 (421)
T 2ih2_A 172 EDFALLREFLAREGK-TSVYYLGEVFPQKKVSAVVIRFQKS 211 (421)
T ss_dssp GGGHHHHHHHHHHSE-EEEEEEESCSTTCCCCEEEEEEESS
T ss_pred ccHHHHHHHHHhcCC-eEEEECCCCCCCCCccEEEEEEEeC
Confidence 12344444443 344 3333222233344445566666654
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=91.92 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=79.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+|||||||+|..++.++++.+ .+++..|.|.+++.+++++...+ .+++.+...|+... ....+
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~------~~rv~~~~gD~~~~-------~~~~~ 245 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE------EEQIDFQEGDFFKD-------PLPEA 245 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--------CCSEEEEESCTTTS-------CCCCC
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc------cCceeeecCccccC-------CCCCc
Confidence 456999999999999999997776 58889999999999988775433 46788888766541 13468
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|++..++|+..+ ...+++.+++.|+|| |+++++-
T Consensus 246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pg------g~lli~e 283 (353)
T 4a6d_A 246 DLYILARVLHDWADGKCSHLLERIYHTCKPG------GGILVIE 283 (353)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHHHHCCTT------CEEEEEE
T ss_pred eEEEeeeecccCCHHHHHHHHHHHHhhCCCC------CEEEEEE
Confidence 99999999997655 457899999999998 5655543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6.8e-09 Score=93.36 Aligned_cols=127 Identities=11% Similarity=0.061 Sum_probs=82.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhc--ccccccCCCcEEEEEEEeCCCCccchhh-c
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDAN--AGLISLRGGSVHVAPLRWGEAEANDVAV-V 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n--~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~ 179 (282)
.+++|||||||+|..++.+++.. ..+|+++|+ +.+++.+++|+... +. ...++.+...|+.. .+.. .
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl----~~~rv~~~~~D~~~----~l~~~~ 191 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY----EDPRVNLVIGDGVA----FLKNAA 191 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GSTTEEEEESCHHH----HHHTSC
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----CCCcEEEEECCHHH----HHHhcc
Confidence 36799999999999999998654 369999999 99999999988653 21 13467776654432 1111 1
Q ss_pred CCCccEEEEcCc--cCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEeec--CcccHHHHHHHHhhcCc
Q 023457 180 GREFDVILASDV--VYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR--RWKKDSVFFKKAKKLFD 246 (282)
Q Consensus 180 ~~~fD~Ii~sd~--ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~--~~~~~~~f~~~~~~~f~ 246 (282)
..+||+|++... ...... ...+++.+.++|+|| |. +++..... .........+.+++.|.
T Consensus 192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg------G~-lv~~~~~~~~~~~~~~~~~~~l~~~F~ 257 (334)
T 1xj5_A 192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG------GV-VCTQAESLWLHMDIIEDIVSNCREIFK 257 (334)
T ss_dssp TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE------EE-EEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC------cE-EEEecCCccccHHHHHHHHHHHHHhCc
Confidence 368999998432 221121 478999999999998 44 44321111 11123444555666776
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.2e-09 Score=87.91 Aligned_cols=91 Identities=11% Similarity=-0.046 Sum_probs=65.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHH----h-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 106 QLNILELGSGTGLVGMAAAAI----L-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~----~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
+.+|||||||+|..++.++.. . +++|+++|+ +.+++.++. ...++.+...|+.+. ..++..
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-----------~~~~v~~~~gD~~~~--~~l~~~ 148 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----------DMENITLHQGDCSDL--TTFEHL 148 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----------GCTTEEEEECCSSCS--GGGGGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-----------cCCceEEEECcchhH--HHHHhh
Confidence 569999999999999999865 2 589999999 888776651 124677776555441 002222
Q ss_pred C-CCccEEEEcCccCCCCCHHHHHHHHHH-HHhcC
Q 023457 180 G-REFDVILASDVVYHDHLFDPLLVTLRL-FLNSG 212 (282)
Q Consensus 180 ~-~~fD~Ii~sd~ly~~~~~~~ll~~l~~-ll~~g 212 (282)
. .+||+|++... + .....++..+.+ +|+||
T Consensus 149 ~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpG 180 (236)
T 2bm8_A 149 REMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEG 180 (236)
T ss_dssp SSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTT
T ss_pred ccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCC
Confidence 3 37999997543 2 367889999997 99998
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-09 Score=90.06 Aligned_cols=102 Identities=11% Similarity=-0.067 Sum_probs=63.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-Hh-HHHHH---HHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PH-VLTNL---QFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~-~l~~~---~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
++.+|||||||+|..++.+++.. +.+|+++|+ +. |++.+ ++++..++. .++.+...+... ++.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v~~~~~d~~~-----l~~ 92 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------SNVVFVIAAAES-----LPF 92 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSEEEECCBTTB-----CCG
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCeEEEEcCHHH-----hhh
Confidence 37799999999999999988543 468999999 44 55555 666555442 245555544333 221
Q ss_pred -cCCCccEEEEcCccCC-----CCCHHHHHHHHHHHHhcCCCCCCCceEEE
Q 023457 179 -VGREFDVILASDVVYH-----DHLFDPLLVTLRLFLNSGEPEPKKKKMNF 223 (282)
Q Consensus 179 -~~~~fD~Ii~sd~ly~-----~~~~~~ll~~l~~ll~~g~~~~~~g~~~i 223 (282)
....+|.|.++..... ......+++.+.++|+|| |.+++
T Consensus 93 ~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpG------G~l~i 137 (225)
T 3p2e_A 93 ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKE------AHFEF 137 (225)
T ss_dssp GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEE------EEEEE
T ss_pred hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCC------cEEEE
Confidence 1134555554432111 112356889999999998 56655
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.78 E-value=7.2e-08 Score=89.92 Aligned_cols=153 Identities=17% Similarity=0.057 Sum_probs=96.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--------------CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEe
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--------------GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRW 168 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--------------~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~ 168 (282)
..+.+|||.|||+|...+.++... ..+++++|+ +.++..++.|+..++.. ...+.+...|.
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----~~~~~i~~gD~ 245 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCEDS 245 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECCT
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----cCCCCEeeCCC
Confidence 457799999999999999887653 368999999 99999999999887641 01233343332
Q ss_pred CCCCccchhhcCCCccEEEEcCccCCCCC-----------------HHHHHHHHHHHHhcCCCCCCCceEEEEEEee--c
Q 023457 169 GEAEANDVAVVGREFDVILASDVVYHDHL-----------------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL--R 229 (282)
Q Consensus 169 ~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~-----------------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~--~ 229 (282)
... . ...+||+|+++.++..... ...++..+.++|++| |.++++.+.. -
T Consensus 246 l~~-----~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~g------G~~a~V~p~~~L~ 313 (445)
T 2okc_A 246 LEK-----E-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG------GRAAVVLPDNVLF 313 (445)
T ss_dssp TTS-----C-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE------EEEEEEEEHHHHH
T ss_pred CCC-----c-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccC------CEEEEEECCcccc
Confidence 221 1 1248999999987764221 136788889999998 7888877642 1
Q ss_pred CcccHHHHHHHHhhcCceEEEcccC--CCCCcccceEEEEEeeec
Q 023457 230 RWKKDSVFFKKAKKLFDVETIHADL--PCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 230 ~~~~~~~f~~~~~~~f~ve~v~~~~--~~~~~~~~~~v~~~~~~~ 272 (282)
+......+.+.+.+.+.++.+-.-+ .+........++.+.|++
T Consensus 314 ~~~~~~~iR~~L~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~~ 358 (445)
T 2okc_A 314 EAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQ 358 (445)
T ss_dssp CSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred cCcHHHHHHHHHHhcCcEEEEEeCCCCCccCCCCCEEEEEEECCC
Confidence 1112233444333344555443222 222334455666676654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=91.15 Aligned_cols=101 Identities=19% Similarity=0.091 Sum_probs=66.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+++|||||||+|..+..+++.. ..+|+++|+ +.+++.+++++....... ...++.+...|... .+.....+|
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~--~~~rv~~~~~D~~~----~l~~~~~~f 182 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--SHPKLDLFCGDGFE----FLKNHKNEF 182 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--GCTTEEEECSCHHH----HHHHCTTCE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc--CCCCEEEEEChHHH----HHHhcCCCc
Confidence 5799999999999999998554 379999999 999999999876431000 13456665433221 122235689
Q ss_pred cEEEEcCccCC--CC-CH-HHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYH--DH-LF-DPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~--~~-~~-~~ll~~l~~ll~~g 212 (282)
|+|++...-.. .. .+ ..+++.+.++|+||
T Consensus 183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg 215 (314)
T 2b2c_A 183 DVIITDSSDPVGPAESLFGQSYYELLRDALKED 215 (314)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEE
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC
Confidence 99998432111 11 12 68899999999998
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=93.54 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=70.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-C-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCc-EEEEEEEeCCCCccchh-hcC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-G-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGS-VHVAPLRWGEAEANDVA-VVG 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~-v~~~~ld~~~~~~~~~~-~~~ 180 (282)
|.+|||++||+|..++.+|+.. + ++|+++|+ +.+++.+++|++.|++ .++ +.+...|..+ -+. ...
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----~~~~v~v~~~Da~~----~l~~~~~ 123 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----PEDRYEIHGMEANF----FLRKEWG 123 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHH----HHHSCCS
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCceEEEEeCCHHH----HHHHhhC
Confidence 7799999999999999998753 3 68999999 9999999999999985 233 6555433211 111 123
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..||+|++.. | .....++..+.++++++
T Consensus 124 ~~fD~V~lDP--~--g~~~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 124 FGFDYVDLDP--F--GTPVPFIESVALSMKRG 151 (392)
T ss_dssp SCEEEEEECC--S--SCCHHHHHHHHHHEEEE
T ss_pred CCCcEEEECC--C--cCHHHHHHHHHHHhCCC
Confidence 5799999854 4 23456888888999987
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=88.66 Aligned_cols=139 Identities=10% Similarity=0.006 Sum_probs=79.2
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
.+=.++..|.+.+.... ..++.+|||||||+|..+..++.. ++|+++|+ + ++..++. +.
T Consensus 55 ~~sR~a~KL~~i~~~~~-------------~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~----~~ 114 (265)
T 2oxt_A 55 SVSRGTAKLAWMEERGY-------------VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHE----VP 114 (265)
T ss_dssp CSSTHHHHHHHHHHHTS-------------CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCC----CC
T ss_pred ccchHHHHHHHHHHcCC-------------CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhh----hh
Confidence 34456777777776621 235889999999999999999854 79999999 6 4322111 00
Q ss_pred cccccCCCcEEEE--EEEeCCCCccchhhcCCCccEEEEcCccCCCCCH----H---HHHHHHHHHHhcCCCCCCCc--e
Q 023457 152 GLISLRGGSVHVA--PLRWGEAEANDVAVVGREFDVILASDVVYHDHLF----D---PLLVTLRLFLNSGEPEPKKK--K 220 (282)
Q Consensus 152 ~~~~~~~~~v~~~--~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~----~---~ll~~l~~ll~~g~~~~~~g--~ 220 (282)
........++.+. ..| ...++ ..+||+|++... +..... . .++..+.++|+|| | .
T Consensus 115 ~~~~~~~~~v~~~~~~~D-----~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG------G~~~ 180 (265)
T 2oxt_A 115 RITESYGWNIVKFKSRVD-----IHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKN------PSAD 180 (265)
T ss_dssp CCCCBTTGGGEEEECSCC-----TTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHC------TTCE
T ss_pred hhhhccCCCeEEEecccC-----HhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccC------CCeE
Confidence 0000001133333 222 22222 468999999654 332221 1 2788889999999 6 4
Q ss_pred EEEEEEeecCcccHHHHHHHHhhcCc
Q 023457 221 MNFVMAHLRRWKKDSVFFKKAKKLFD 246 (282)
Q Consensus 221 ~~il~~~~~~~~~~~~f~~~~~~~f~ 246 (282)
+++-. ..........++..+...|.
T Consensus 181 fv~kv-~~~~~~~~~~~l~~l~~~f~ 205 (265)
T 2oxt_A 181 FVVKV-LCPYSVEVMERLSVMQRKWG 205 (265)
T ss_dssp EEEEE-SCTTSHHHHHHHHHHHHHHC
T ss_pred EEEEe-CCCCChhHHHHHHHHHHHcC
Confidence 44422 22222112256666666564
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.6e-08 Score=89.06 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=72.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---------------------------------------CEEEEEeh-HhHHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---------------------------------------AKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---------------------------------------~~V~~tD~-~~~l~~~~ 144 (282)
++.+|||+|||+|.+.+.+|.... .+|+++|+ +.+++.++
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 578999999999999999986542 46999999 99999999
Q ss_pred HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC----CCCHHHHHHHHHHHHhc
Q 023457 145 FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH----DHLFDPLLVTLRLFLNS 211 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~~ 211 (282)
.|+..++. .+.+.+...|+.+ +.. ..+||+|+++.+... ......+.+.+.+.+++
T Consensus 275 ~Na~~~gl-----~~~i~~~~~D~~~-----l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 275 ENAEIAGV-----DEYIEFNVGDATQ-----FKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp HHHHHHTC-----GGGEEEEECCGGG-----CCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-----CCceEEEECChhh-----cCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence 99999885 3467777765544 111 357999999877532 23456677777778876
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-08 Score=92.79 Aligned_cols=94 Identities=17% Similarity=0.071 Sum_probs=71.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++...+ .+++++|++.+++.++. ..++.+...|+.+ .+ ..|
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------------~~~v~~~~~d~~~----~~----~~~ 268 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP------------LSGIEHVGGDMFA----SV----PQG 268 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------CTTEEEEECCTTT----CC----CCE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh------------cCCCEEEeCCccc----CC----CCC
Confidence 467999999999999999987664 58899999777765542 1246666655543 11 239
Q ss_pred cEEEEcCccCCCCCHH--HHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 184 DVILASDVVYHDHLFD--PLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~--~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|+|+++.++++..+.. .+++.+.++|+|| |.+++.
T Consensus 269 D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pg------G~l~i~ 305 (372)
T 1fp1_D 269 DAMILKAVCHNWSDEKCIEFLSNCHKALSPN------GKVIIV 305 (372)
T ss_dssp EEEEEESSGGGSCHHHHHHHHHHHHHHEEEE------EEEEEE
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHhcCCC------CEEEEE
Confidence 9999999999887766 9999999999998 565554
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.4e-08 Score=88.08 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=76.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---------------------------------------CEEEEEeh-HhHHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---------------------------------------AKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---------------------------------------~~V~~tD~-~~~l~~~~ 144 (282)
++.+|||.+||+|.+.+.+|.... .+|+++|+ +.+++.++
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 477999999999999999985543 35999999 99999999
Q ss_pred HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC----CCHHHHHHHHHHHHhcCCCCCCCce
Q 023457 145 FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD----HLFDPLLVTLRLFLNSGEPEPKKKK 220 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~----~~~~~ll~~l~~ll~~g~~~~~~g~ 220 (282)
.|+..++. .+.+.+...|+.+ +.. ..+||+|+++.+.... .....+.+.+.+.+++-+ ++.
T Consensus 281 ~Na~~~gl-----~~~I~~~~~D~~~-----~~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~----g~~ 345 (393)
T 3k0b_A 281 QNAVEAGL-----GDLITFRQLQVAD-----FQT-EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMP----TWS 345 (393)
T ss_dssp HHHHHTTC-----TTCSEEEECCGGG-----CCC-CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCT----TCE
T ss_pred HHHHHcCC-----CCceEEEECChHh-----CCC-CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCC----CCE
Confidence 99999885 3456776655544 111 3589999998775321 345567777777777621 146
Q ss_pred EEEEEE
Q 023457 221 MNFVMA 226 (282)
Q Consensus 221 ~~il~~ 226 (282)
++++..
T Consensus 346 ~~iit~ 351 (393)
T 3k0b_A 346 VYVLTS 351 (393)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 555543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5e-08 Score=88.61 Aligned_cols=94 Identities=23% Similarity=0.138 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+|||||||+|..+..+++..+ .+++++|++.+++.++. ..++.+...|+.+ .++ ..
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~v~~~~~D~~~----~~p---~~- 260 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ------------FPGVTHVGGDMFK----EVP---SG- 260 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------CTTEEEEECCTTT----CCC---CC-
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh------------cCCeEEEeCCcCC----CCC---CC-
Confidence 467999999999999999987664 68999999777665542 2467777766554 121 23
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|+|++..++|+.. ....+++.+++.|+|| |.++++
T Consensus 261 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pg------G~l~i~ 297 (364)
T 3p9c_A 261 DTILMKWILHDWSDQHCATLLKNCYDALPAH------GKVVLV 297 (364)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHSCTT------CEEEEE
T ss_pred CEEEehHHhccCCHHHHHHHHHHHHHHcCCC------CEEEEE
Confidence 9999999998654 4568999999999998 565554
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-07 Score=85.66 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=77.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---------------------------------------CEEEEEeh-HhHHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---------------------------------------AKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---------------------------------------~~V~~tD~-~~~l~~~~ 144 (282)
++..|||.+||+|.+.+.+|.... .+|+++|+ +.+++.++
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 477999999999999999985443 35999999 99999999
Q ss_pred HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC----CCCHHHHHHHHHHHHhcCCCCCCCce
Q 023457 145 FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH----DHLFDPLLVTLRLFLNSGEPEPKKKK 220 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~~g~~~~~~g~ 220 (282)
.|+..++. .+.+.+...|+.+ +.. ...||+|+++.+... ......+.+.+.+.+++-+ ++.
T Consensus 274 ~Na~~~gl-----~~~I~~~~~D~~~-----l~~-~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~----g~~ 338 (384)
T 3ldg_A 274 KNAREVGL-----EDVVKLKQMRLQD-----FKT-NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK----TWS 338 (384)
T ss_dssp HHHHHTTC-----TTTEEEEECCGGG-----CCC-CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT----TSE
T ss_pred HHHHHcCC-----CCceEEEECChHH-----CCc-cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC----CcE
Confidence 99999885 4467777655544 111 347999999877542 2346677777888887611 156
Q ss_pred EEEEEE
Q 023457 221 MNFVMA 226 (282)
Q Consensus 221 ~~il~~ 226 (282)
++++..
T Consensus 339 ~~iit~ 344 (384)
T 3ldg_A 339 QFILTN 344 (384)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 555543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-08 Score=85.54 Aligned_cols=122 Identities=9% Similarity=-0.006 Sum_probs=77.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh--cccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA--NAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~--n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+++|||||||+|..+..+++. +.+|+++|+ +.+++.+++++.. ++. ...++.+.. ++ ...+ . .
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~----~~~rv~~~~---~D--~~~~--~-~ 138 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVK----NNKNFTHAK---QL--LDLD--I-K 138 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHH----TCTTEEEES---SG--GGSC--C-C
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhcccc----CCCeEEEEe---ch--HHHH--H-h
Confidence 3579999999999999988766 589999999 9999999876532 111 123555543 22 1111 1 6
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc--cHHHHHHHHhhcCceEEEc
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK--KDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~--~~~~f~~~~~~~f~ve~v~ 251 (282)
+||+|++. . .+...+++.+.++|+|| |.+++ ........ ........++..|......
T Consensus 139 ~fD~Ii~d-~----~dp~~~~~~~~~~L~pg------G~lv~-~~~~~~~~~~~~~~~~~~l~~~F~~~~~~ 198 (262)
T 2cmg_A 139 KYDLIFCL-Q----EPDIHRIDGLKRMLKED------GVFIS-VAKHPLLEHVSMQNALKNMGGVFSVAMPF 198 (262)
T ss_dssp CEEEEEES-S----CCCHHHHHHHHTTEEEE------EEEEE-EEECTTTCHHHHHHHHHHHHTTCSEEEEE
T ss_pred hCCEEEEC-C----CChHHHHHHHHHhcCCC------cEEEE-EcCCcccCHHHHHHHHHHHHHhCCceEEE
Confidence 79999985 2 23345899999999998 44433 32222111 2334445555667655444
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-08 Score=87.46 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=58.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H-------hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-P-------HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~-------~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~ 176 (282)
++.+|||+|||+|..++.+|.. +++|+++|+ + .+++.++.|+..|+. ..++.+...|..+ .+
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----~~ri~~~~~d~~~----~l 152 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT-----AARINLHFGNAAE----QM 152 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----HTTEEEEESCHHH----HH
T ss_pred CcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----ccCeEEEECCHHH----HH
Confidence 3679999999999999999864 689999999 9 899999999888774 2346666644332 11
Q ss_pred hhc-C--CCccEEEEcCccC
Q 023457 177 AVV-G--REFDVILASDVVY 193 (282)
Q Consensus 177 ~~~-~--~~fD~Ii~sd~ly 193 (282)
... . ..||+|++..++.
T Consensus 153 ~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 153 PALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHCCCSEEEECCCC-
T ss_pred HhhhccCCCccEEEECCCCC
Confidence 211 2 6899999865543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-07 Score=80.29 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=66.4
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..-.++..++.++. ..+|.+|||+|||+|..++.+|... .++|+++|+ +.+++.+++|+..
T Consensus 86 ~Qd~~s~l~~~~l~----------------~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r 149 (309)
T 2b9e_A 86 LQDRASCLPAMLLD----------------PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR 149 (309)
T ss_dssp ECCTGGGHHHHHHC----------------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHhC----------------CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 34456777777772 2347899999999999999998764 379999999 9999999999998
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEE
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILA 188 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~ 188 (282)
++. .++.+...|+.+.... .. ....||.|++
T Consensus 150 ~g~------~~v~~~~~D~~~~~~~-~~-~~~~fD~Vl~ 180 (309)
T 2b9e_A 150 AGV------SCCELAEEDFLAVSPS-DP-RYHEVHYILL 180 (309)
T ss_dssp TTC------CSEEEEECCGGGSCTT-CG-GGTTEEEEEE
T ss_pred cCC------CeEEEEeCChHhcCcc-cc-ccCCCCEEEE
Confidence 774 2566666555432110 00 0147999997
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-07 Score=82.62 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=57.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++++.. ..++.+...|+... ......|
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l~~-----~~~~~~f 115 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDALKV-----DLNKLDF 115 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTTTS-----CGGGSCC
T ss_pred CcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchhhC-----CcccCCc
Confidence 4779999999999999999855 789999999 9999999998873 23567766555442 1123469
Q ss_pred cEEEEcCccC
Q 023457 184 DVILASDVVY 193 (282)
Q Consensus 184 D~Ii~sd~ly 193 (282)
|+|+++-+.+
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9999875543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-07 Score=75.67 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=75.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---c
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV---V 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~---~ 179 (282)
.+|.+|||||||. +.+|+ +.|++.++++... .+.+...+..+ ++. .
T Consensus 11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----------~~~~~~~d~~~-----~~~~~~~ 60 (176)
T 2ld4_A 11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----------EGRVSVENIKQ-----LLQSAHK 60 (176)
T ss_dssp CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----------TSEEEEEEGGG-----GGGGCCC
T ss_pred CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----------CcEEEEechhc-----CccccCC
Confidence 4688999999996 23899 8999999876532 24555555543 222 3
Q ss_pred CCCccEEEEcCccCCC-CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec-----Cc-ccHHHHHHHHh-hcCceE
Q 023457 180 GREFDVILASDVVYHD-HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR-----RW-KKDSVFFKKAK-KLFDVE 248 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~-~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~-----~~-~~~~~f~~~~~-~~f~ve 248 (282)
..+||+|+++.++++. .+...+++.+.++|+|| |.+++...... .+ .....+...++ .|| ++
T Consensus 61 ~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~Lkpg------G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTTLHSAEILAEIARILRPG------GCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp SSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEE------EEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred CCCEeEEEECChhhhcccCHHHHHHHHHHHCCCC------EEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 5789999999999988 88899999999999998 56555322111 11 12455656555 489 76
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.9e-07 Score=85.29 Aligned_cols=158 Identities=11% Similarity=-0.062 Sum_probs=97.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-------------------CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEE
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-------------------GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVA 164 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-------------------~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~ 164 (282)
++.+|||.+||+|...+.++... ...++++|+ +.++..++.|+..++..... ...+.+.
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~-~~~~~I~ 247 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL-DHGGAIR 247 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBG-GGTBSEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccc-cccCCeE
Confidence 47799999999999998887543 147999999 99999999999887642100 0012333
Q ss_pred EEEeCCCCccchhhcCCCccEEEEcCccCCCCC--------------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeec-
Q 023457 165 PLRWGEAEANDVAVVGREFDVILASDVVYHDHL--------------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR- 229 (282)
Q Consensus 165 ~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~--------------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~- 229 (282)
. ++... .......+||+|+++.++..... ...++..+.++|+++ |+++++++...
T Consensus 248 ~---gDtL~-~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g------Gr~a~V~p~~~L 317 (541)
T 2ar0_A 248 L---GNTLG-SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG------GRAAVVVPDNVL 317 (541)
T ss_dssp E---SCTTS-HHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE------EEEEEEEEHHHH
T ss_pred e---CCCcc-cccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC------CEEEEEecCcce
Confidence 2 33111 11112468999999987653321 236788888999998 78888876431
Q ss_pred -CcccHHHHHHHHhhcCceEEEcccC--CCCCcccceEEEEEeeecC
Q 023457 230 -RWKKDSVFFKKAKKLFDVETIHADL--PCNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 230 -~~~~~~~f~~~~~~~f~ve~v~~~~--~~~~~~~~~~v~~~~~~~~ 273 (282)
+......+.+.+.+.+.++.+-.-+ .+........|+.+.|++.
T Consensus 318 ~~~~~~~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~~ 364 (541)
T 2ar0_A 318 FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 364 (541)
T ss_dssp HCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred ecCcHHHHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECCCC
Confidence 1112334444444445555433222 2333345567788877654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.59 E-value=8e-08 Score=88.37 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=57.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhc--ccccccCCCcEEEEEEEeCCCCccchhh-cCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDAN--AGLISLRGGSVHVAPLRWGEAEANDVAV-VGR 181 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n--~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~ 181 (282)
|.+|||||||+|..++.++ ..+.+|+++|+ +.+++.++.|+..+ +. .++.+...|..+. +.. ...
T Consensus 94 g~~VLDLgcG~G~~al~LA-~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl------~~i~~i~~Da~~~----L~~~~~~ 162 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALM-SKASQGIYIERNDETAVAARHNIPLLLNEG------KDVNILTGDFKEY----LPLIKTF 162 (410)
T ss_dssp TCEEEESSCSSSHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHSCTT------CEEEEEESCGGGS----HHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHH-hcCCEEEEEECCHHHHHHHHHhHHHhccCC------CcEEEEECcHHHh----hhhccCC
Confidence 7899999999999999987 45689999999 99999999999987 52 3566666544331 111 124
Q ss_pred CccEEEEcCc
Q 023457 182 EFDVILASDV 191 (282)
Q Consensus 182 ~fD~Ii~sd~ 191 (282)
.||+|++...
T Consensus 163 ~fDvV~lDPP 172 (410)
T 3ll7_A 163 HPDYIYVDPA 172 (410)
T ss_dssp CCSEEEECCE
T ss_pred CceEEEECCC
Confidence 7999998544
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=83.46 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=55.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++++..++. .++.+...|+.. ++ ...|
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~------~~v~~~~~D~~~-----~~--~~~~ 107 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY------NNLEVYEGDAIK-----TV--FPKF 107 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC------CCEEC----CCS-----SC--CCCC
T ss_pred CcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECchhh-----CC--cccC
Confidence 4779999999999999999844 689999999 9999999999876552 356666555443 11 2479
Q ss_pred cEEEEcCccC
Q 023457 184 DVILASDVVY 193 (282)
Q Consensus 184 D~Ii~sd~ly 193 (282)
|+|+++.+.+
T Consensus 108 D~Vv~n~py~ 117 (299)
T 2h1r_A 108 DVCTANIPYK 117 (299)
T ss_dssp SEEEEECCGG
T ss_pred CEEEEcCCcc
Confidence 9999865443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-07 Score=80.01 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++++..++. ..++.+...|..+. + ...|
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~D~~~~-----~--~~~f 94 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKT-----D--LPFF 94 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTS-----C--CCCC
T ss_pred CCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcceecc-----c--chhh
Confidence 4779999999999999999855 679999999 9999999998865442 23566666554431 1 2379
Q ss_pred cEEEEcCccC
Q 023457 184 DVILASDVVY 193 (282)
Q Consensus 184 D~Ii~sd~ly 193 (282)
|+|+++-+.+
T Consensus 95 D~vv~nlpy~ 104 (285)
T 1zq9_A 95 DTCVANLPYQ 104 (285)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEecCcc
Confidence 9999965554
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9.6e-08 Score=87.27 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=63.3
Q ss_pred CCCcEEEeCCC------CCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 105 CQLNILELGSG------TGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 105 ~g~~VLELGcG------tG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
++.+||||||| +|..++.+++.. .++|+++|+ +.|. . ...++.+...|..+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-------~~~rI~fv~GDa~d----- 275 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-------DELRIRTIQGDQND----- 275 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-------CBTTEEEEECCTTC-----
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-------cCCCcEEEEecccc-----
Confidence 57899999999 777777777553 579999999 7752 1 13467776654433
Q ss_pred hhhc------CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 176 VAVV------GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 176 ~~~~------~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
++.. .++||+|++. ..++..+....++.+.++|+||
T Consensus 276 lpf~~~l~~~d~sFDlVisd-gsH~~~d~~~aL~el~rvLKPG 317 (419)
T 3sso_A 276 AEFLDRIARRYGPFDIVIDD-GSHINAHVRTSFAALFPHVRPG 317 (419)
T ss_dssp HHHHHHHHHHHCCEEEEEEC-SCCCHHHHHHHHHHHGGGEEEE
T ss_pred cchhhhhhcccCCccEEEEC-CcccchhHHHHHHHHHHhcCCC
Confidence 2222 4789999985 4455567788999999999998
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-07 Score=79.45 Aligned_cols=77 Identities=9% Similarity=0.119 Sum_probs=55.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.++..++.. +++|+++|+ +.+++.+++++.. ..++.+...|........+. ...+|
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~-~~~~~ 98 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ--------QKNITIYQNDALQFDFSSVK-TDKPL 98 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT--------CTTEEEEESCTTTCCGGGSC-CSSCE
T ss_pred CcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh--------CCCcEEEEcchHhCCHHHhc-cCCCe
Confidence 4779999999999999999854 589999999 9999999998764 23567776665543221110 02467
Q ss_pred cEEEEcCcc
Q 023457 184 DVILASDVV 192 (282)
Q Consensus 184 D~Ii~sd~l 192 (282)
| |+++-+.
T Consensus 99 ~-vv~NlPY 106 (255)
T 3tqs_A 99 R-VVGNLPY 106 (255)
T ss_dssp E-EEEECCH
T ss_pred E-EEecCCc
Confidence 7 7776444
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=4.4e-07 Score=80.50 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=77.2
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-----HhHHHHHHHHH
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-----PHVLTNLQFNV 147 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-----~~~l~~~~~n~ 147 (282)
.+=.++..|.+.+.. . ...++.+|||||||+|..+..+++. ++|+++|+ +.+++.+.
T Consensus 63 ~~sR~a~KL~~i~~~-~------------~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--- 124 (305)
T 2p41_A 63 AVSRGSAKLRWFVER-N------------LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--- 124 (305)
T ss_dssp CSSTHHHHHHHHHHT-T------------SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC---
T ss_pred ccccHHHHHHHHHHc-C------------CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH---
Confidence 344566777776655 2 1235789999999999999999854 68999998 33321110
Q ss_pred HhcccccccCCCcEEEEEE-EeCCCCccchhhcCCCccEEEEcCccC---CCCCHH---HHHHHHHHHHhcCCCCCCCce
Q 023457 148 DANAGLISLRGGSVHVAPL-RWGEAEANDVAVVGREFDVILASDVVY---HDHLFD---PLLVTLRLFLNSGEPEPKKKK 220 (282)
Q Consensus 148 ~~n~~~~~~~~~~v~~~~l-d~~~~~~~~~~~~~~~fD~Ii~sd~ly---~~~~~~---~ll~~l~~ll~~g~~~~~~g~ 220 (282)
.+.. ....+.+... |.. .+ ...+||+|++.-.+. +..+.. .++..+.++|+|| |.
T Consensus 125 -~~~~----~~~~v~~~~~~D~~-----~l--~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpG------G~ 186 (305)
T 2p41_A 125 -MSTY----GWNLVRLQSGVDVF-----FI--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN------TQ 186 (305)
T ss_dssp -CCST----TGGGEEEECSCCTT-----TS--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT------CE
T ss_pred -hhhc----CCCCeEEEeccccc-----cC--CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCC------CE
Confidence 0000 0124554432 222 12 145899999954332 111111 4677888999998 54
Q ss_pred EEEEEEeecCc-ccHHHHHHHHhhcCce
Q 023457 221 MNFVMAHLRRW-KKDSVFFKKAKKLFDV 247 (282)
Q Consensus 221 ~~il~~~~~~~-~~~~~f~~~~~~~f~v 247 (282)
+++ ...... .....++..+...|.-
T Consensus 187 ~v~--kv~~~~~~~~~~~l~~l~~~f~~ 212 (305)
T 2p41_A 187 FCV--KVLNPYMSSVIEKMEALQRKHGG 212 (305)
T ss_dssp EEE--EESCCCSHHHHHHHHHHHHHHCC
T ss_pred EEE--EeCCCCCchHHHHHHHHHHHcCC
Confidence 443 222222 2235666666555543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.6e-07 Score=79.56 Aligned_cols=99 Identities=18% Similarity=0.127 Sum_probs=66.9
Q ss_pred CcEEEeCCCC---CHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch--hhc
Q 023457 107 LNILELGSGT---GLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV--AVV 179 (282)
Q Consensus 107 ~~VLELGcGt---G~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~--~~~ 179 (282)
..|||||||+ |.+...+... ..++|+++|. +.|+..++.++..+. ..++.+...|..+... .+ +..
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------~~~~~~v~aD~~~~~~-~l~~~~~ 152 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------EGRTAYVEADMLDPAS-ILDAPEL 152 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------SSEEEEEECCTTCHHH-HHTCHHH
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------CCcEEEEEecccChhh-hhccccc
Confidence 5899999997 3343333222 2479999999 999999998776432 2357777766655110 00 000
Q ss_pred CCCcc-----EEEEcCccCCCCC---HHHHHHHHHHHHhcC
Q 023457 180 GREFD-----VILASDVVYHDHL---FDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD-----~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g 212 (282)
...|| .|+++-++++..+ ...+++.+.+.|+||
T Consensus 153 ~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG 193 (277)
T 3giw_A 153 RDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG 193 (277)
T ss_dssp HTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred ccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence 13344 5888899998766 468999999999998
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=9.8e-07 Score=76.91 Aligned_cols=74 Identities=16% Similarity=0.060 Sum_probs=54.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++ +|||||||+|.++..++.. +++|+++|+ +.+++.+++++.. .++.+...|....+ ++. ...+
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~---------~~v~vi~~D~l~~~---~~~-~~~~ 111 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG---------LPVRLVFQDALLYP---WEE-VPQG 111 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT---------SSEEEEESCGGGSC---GGG-SCTT
T ss_pred CC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC---------CCEEEEECChhhCC---hhh-ccCc
Confidence 47 9999999999999999855 589999999 9999999987652 25666665544321 111 1268
Q ss_pred cEEEEcCccC
Q 023457 184 DVILASDVVY 193 (282)
Q Consensus 184 D~Ii~sd~ly 193 (282)
|.|+++-+.+
T Consensus 112 ~~iv~NlPy~ 121 (271)
T 3fut_A 112 SLLVANLPYH 121 (271)
T ss_dssp EEEEEEECSS
T ss_pred cEEEecCccc
Confidence 9888876554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-06 Score=77.86 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=101.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA- 177 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~- 177 (282)
..+.+|||.+||+|.+.+.++... ...++++|+ +.++..++.|+..++.. ...+.+...|.-.. +.+
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~~~~I~~gDtL~~---d~p~ 292 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----IENQFLHNADTLDE---DWPT 292 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCTTTS---CSCC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----cCccceEecceecc---cccc
Confidence 467899999999999988887654 468999999 99999999999887742 13445544332221 111
Q ss_pred hcCCCccEEEEcCccCCCC-----------------------CHHHHHHHHHHHHh-cCCCCCCCceEEEEEEeec--Cc
Q 023457 178 VVGREFDVILASDVVYHDH-----------------------LFDPLLVTLRLFLN-SGEPEPKKKKMNFVMAHLR--RW 231 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~-----------------------~~~~ll~~l~~ll~-~g~~~~~~g~~~il~~~~~--~~ 231 (282)
....+||+||++.++.... .--.++..+.++|+ ++ |+++++++..- +.
T Consensus 293 ~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g------Gr~a~VlP~g~Lf~~ 366 (542)
T 3lkd_A 293 QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN------GVMAIVLPHGVLFRG 366 (542)
T ss_dssp SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT------CEEEEEEETHHHHCC
T ss_pred cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc------eeEEEEecchHhhCC
Confidence 1246899999987763210 01237888888899 88 78888887531 11
Q ss_pred ccHHHHHHHHhhcCceEEEcccCC--CCCcccceEEEEEeeec
Q 023457 232 KKDSVFFKKAKKLFDVETIHADLP--CNGARVGVVVYRMTGKA 272 (282)
Q Consensus 232 ~~~~~f~~~~~~~f~ve~v~~~~~--~~~~~~~~~v~~~~~~~ 272 (282)
.....+.+.+.+.+.++.|-.-+. +.+......|+.+.|++
T Consensus 367 ~~~~~iRk~Lle~~~l~~II~LP~~lF~~t~i~t~Ilvl~K~k 409 (542)
T 3lkd_A 367 NAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKNR 409 (542)
T ss_dssp THHHHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred chhHHHHHHHHhCCceeEEEEccccccCCCCCcEEEEEEecCC
Confidence 223455555555566665543322 33455556778787765
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.6e-07 Score=79.10 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=59.1
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccC---CCcEEEEEEEeCCCCccchhhcCCC
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLR---GGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~---~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|||+|||+|..++.+|.. +++|+++|. +.+...++.|+.......... ..++.+..-|..+ -+......
T Consensus 90 ~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~----~L~~~~~~ 164 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT----ALTDITPR 164 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH----HSTTCSSC
T ss_pred CEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH----HHHhCccc
Confidence 79999999999999999865 678999999 888888877765322100000 1245555533221 11222346
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++. +.|....-..+++...+++++.
T Consensus 165 fDvV~lD-P~y~~~~~saavkk~~~~lr~l 193 (258)
T 2oyr_A 165 PQVVYLD-PMFPHKQKSALVKKEMRVFQSL 193 (258)
T ss_dssp CSEEEEC-CCCCCCCC-----HHHHHHHHH
T ss_pred CCEEEEc-CCCCCcccchHHHHHHHHHHHh
Confidence 9999985 4444333234444444555544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=7.8e-07 Score=85.90 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CC--EEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GA--KVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~--~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
.++++||++|||+|.++..++++. +. +|+|++-..+...+++.+..|+ +.++|++..-+..+..
T Consensus 356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~-----~~dkVtVI~gd~eev~------ 424 (637)
T 4gqb_A 356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEE-----WGSQVTVVSSDMREWV------ 424 (637)
T ss_dssp TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHT-----TGGGEEEEESCTTTCC------
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhcc-----CCCeEEEEeCcceecc------
Confidence 457799999999999965555433 33 7899999445667777888888 4778999886665521
Q ss_pred cCCCccEEEEc---CccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 VGREFDVILAS---DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~s---d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+.+.|+||+= ..+.+. .+...+....++|+|+
T Consensus 425 LPEKVDIIVSEwMG~fLl~E-~mlevL~Ardr~LKPg 460 (637)
T 4gqb_A 425 APEKADIIVSELLGSFADNE-LSPECLDGAQHFLKDD 460 (637)
T ss_dssp CSSCEEEEECCCCBTTBGGG-CHHHHHHHHGGGEEEE
T ss_pred CCcccCEEEEEcCccccccc-CCHHHHHHHHHhcCCC
Confidence 24689999973 222233 3456778888999987
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=73.20 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=44.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWG 169 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~ 169 (282)
++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++++.. ..++.+...|+.
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~--------~~~v~~~~~D~~ 86 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDIL 86 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGG
T ss_pred CCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhcc--------CCCeEEEEChHH
Confidence 5779999999999999999855 589999999 9999999987753 135565554443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=4e-06 Score=82.47 Aligned_cols=156 Identities=12% Similarity=0.030 Sum_probs=94.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC----CEEEEEeh-HhHHHHH--HHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG----AKVTVTDL-PHVLTNL--QFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~----~~V~~tD~-~~~l~~~--~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
.+.+|||.|||+|.+.+.++...+ .+++++|+ +.++..+ +.|+..|..... .....+..-++... ..
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG--i~~~~I~~dD~L~~----~~ 394 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS--NNAPTITGEDVCSL----NP 394 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT--TBCCEEECCCGGGC----CG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC--CCcceEEecchhcc----cc
Confidence 477999999999999999886653 47999999 8899888 667665443211 11112222111110 01
Q ss_pred hcCCCccEEEEcCccCCCC-----------------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 178 VVGREFDVILASDVVYHDH-----------------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~-----------------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
....+||+||++.+..... ....++..+.++|+++ |.++++++..
T Consensus 395 ~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpG------GrLAfIlP~s 468 (878)
T 3s1s_A 395 EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDG------TVISAIMPKQ 468 (878)
T ss_dssp GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTT------CEEEEEEETH
T ss_pred cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCC------cEEEEEEChH
Confidence 1246899999998873211 1334677788888888 7888888753
Q ss_pred cCc---ccHHHHHHHHhhcCceEEEcccCC---CCCcccceEEEEEeeec
Q 023457 229 RRW---KKDSVFFKKAKKLFDVETIHADLP---CNGARVGVVVYRMTGKA 272 (282)
Q Consensus 229 ~~~---~~~~~f~~~~~~~f~ve~v~~~~~---~~~~~~~~~v~~~~~~~ 272 (282)
--. .....+.+.+.+.+.++.+..-+. +........++.+.|.+
T Consensus 469 ~Lf~sg~~~kkLRk~LLe~~~I~aIIdLP~~~~F~~asv~T~ILIlrK~k 518 (878)
T 3s1s_A 469 YLTAQGNESKAFREFLVGNFGLEHIFLYPREGLFEEVIKDTVVFVGRKGS 518 (878)
T ss_dssp HHHCCSHHHHHHHHHHTTTTCEEEEEECCBCCSSCSCBCCEEEEEEETTC
T ss_pred HhccCChHHHHHHHHHHhCCCeEEEEECCCccccCCCCCcEEEEEEEcCC
Confidence 211 124555555556677765543322 23333345566666553
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.7e-06 Score=81.95 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=75.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-------------------------------------------CCEEEEEeh-HhHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-------------------------------------------GAKVTVTDL-PHVL 140 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-------------------------------------------~~~V~~tD~-~~~l 140 (282)
++.+|||.+||+|.+.+.+|... ..+|+++|+ +.++
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 46799999999999999988543 147999999 9999
Q ss_pred HHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC----CCCHHHHHHHHHHHHh---cCC
Q 023457 141 TNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH----DHLFDPLLVTLRLFLN---SGE 213 (282)
Q Consensus 141 ~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~---~g~ 213 (282)
+.++.|+..+++ .+.+.+.+.|+.+... +...+.||+|+++.+.-. ......+.+.+.+.++ +|
T Consensus 270 ~~A~~N~~~agv-----~~~i~~~~~D~~~~~~---~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g- 340 (703)
T 3v97_A 270 QRARTNARLAGI-----GELITFEVKDVAQLTN---PLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG- 340 (703)
T ss_dssp HHHHHHHHHTTC-----GGGEEEEECCGGGCCC---SCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHcCC-----CCceEEEECChhhCcc---ccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCC-
Confidence 999999999885 3457777765544111 111237999999877532 2245666777766665 45
Q ss_pred CCCCCceEEEEE
Q 023457 214 PEPKKKKMNFVM 225 (282)
Q Consensus 214 ~~~~~g~~~il~ 225 (282)
+.++++.
T Consensus 341 -----~~~~ilt 347 (703)
T 3v97_A 341 -----WNLSLFS 347 (703)
T ss_dssp -----CEEEEEE
T ss_pred -----CeEEEEe
Confidence 5655554
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=76.92 Aligned_cols=151 Identities=10% Similarity=0.042 Sum_probs=96.0
Q ss_pred cEEEeCCCCCHHHHHHHHHh----------------CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 108 NILELGSGTGLVGMAAAAIL----------------GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~----------------~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
+|||.+||+|.+.+.++... ...++++|+ +.++..++.|+..++.. ..+.+ ..++
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-----~~i~i---~~gD 318 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID-----FNFGK---KNAD 318 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC-----CBCCS---SSCC
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC-----cccce---eccc
Confidence 99999999999887775432 358999999 99999999999987742 11111 1122
Q ss_pred CCccchhhcCCCccEEEEcCccCCCC-----------------------------CHHHHHHHHHHHHhcCCCCCCCceE
Q 023457 171 AEANDVAVVGREFDVILASDVVYHDH-----------------------------LFDPLLVTLRLFLNSGEPEPKKKKM 221 (282)
Q Consensus 171 ~~~~~~~~~~~~fD~Ii~sd~ly~~~-----------------------------~~~~ll~~l~~ll~~g~~~~~~g~~ 221 (282)
..... .....+||+||++.++.... .--.++..+.++|+++ |++
T Consensus 319 tL~~~-~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g------Gr~ 391 (544)
T 3khk_A 319 SFLDD-QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT------GSM 391 (544)
T ss_dssp TTTSC-SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEE------EEE
T ss_pred hhcCc-ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccC------ceE
Confidence 10000 11246899999998765310 0125788888999998 788
Q ss_pred EEEEEeec--Cc-ccHHHHHHHHhhcCceEEEcccCC--CCCcccceEEEEEeeecC
Q 023457 222 NFVMAHLR--RW-KKDSVFFKKAKKLFDVETIHADLP--CNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 222 ~il~~~~~--~~-~~~~~f~~~~~~~f~ve~v~~~~~--~~~~~~~~~v~~~~~~~~ 273 (282)
+++++..- +. .....+.+.+.+.+.++.|-.-+. +.+......|+.+.|++.
T Consensus 392 aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 392 ALLLANGSMSSNTNNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKN 448 (544)
T ss_dssp EEEEETHHHHCCGGGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCCS
T ss_pred EEEecchhhhcCcchHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCCC
Confidence 88876421 11 234555555555566665543322 334555677888887764
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.2e-06 Score=75.78 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=56.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc-hhhc-C
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND-VAVV-G 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~-~~~~-~ 180 (282)
++.+|||+|||+|..++.++... +.+|+++|. +.+++.+++|+..++ .++.+...++.+ ... +... .
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-------~~v~~v~~d~~~--l~~~l~~~g~ 96 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------DRVSLFKVSYRE--ADFLLKTLGI 96 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------TTEEEEECCGGG--HHHHHHHTTC
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEECCHHH--HHHHHHhcCC
Confidence 47899999999999999998775 579999999 999999999987654 356777655543 111 1111 1
Q ss_pred CCccEEEEc
Q 023457 181 REFDVILAS 189 (282)
Q Consensus 181 ~~fD~Ii~s 189 (282)
.+||.|++.
T Consensus 97 ~~~D~Vl~D 105 (301)
T 1m6y_A 97 EKVDGILMD 105 (301)
T ss_dssp SCEEEEEEE
T ss_pred CCCCEEEEc
Confidence 479999874
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=5.8e-06 Score=71.08 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=37.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFN 146 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n 146 (282)
++.+|||||||+|.++..++...+.+|+++|+ +.+++.++++
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI 73 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS
T ss_pred CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc
Confidence 47799999999999999998553489999999 9999999876
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.8e-06 Score=80.14 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--------------CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL--------------GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~--------------~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
++.|||+|||+|.++..++.+. ..+|+++|. +.++..++.... |+ +.++|++..-+..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng-----~~d~VtVI~gd~ee 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT-----WKRRVTIIESDMRS 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT-----TTTCSEEEESCGGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC-----CCCeEEEEeCchhh
Confidence 5689999999999975443221 239999999 766665555544 66 46778887754433
Q ss_pred CCccchhhc-----CCCccEEEEcCccC--CCCCHHHHHHHHHHHHhcC
Q 023457 171 AEANDVAVV-----GREFDVILASDVVY--HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 171 ~~~~~~~~~-----~~~fD~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g 212 (282)
+..+ ..+.|+||+--+-| ..+..+..+..+.++|+|+
T Consensus 484 -----v~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~ 527 (745)
T 3ua3_A 484 -----LPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPT 527 (745)
T ss_dssp -----HHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTT
T ss_pred -----cccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCC
Confidence 3321 47899999843333 2346677888888999998
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.7e-06 Score=71.50 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCE----EEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAK----VTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~----V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
++.+|||||||+|.++..++... .. |+++|+ +.+++.++++. . .++.+...|...
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~-~~~~~~V~avDid~~~l~~a~~~~--~--------~~v~~i~~D~~~ 101 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARL-ATPGSPLHAVELDRDLIGRLEQRF--G--------ELLELHAGDALT 101 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHH-CBTTBCEEEEECCHHHHHHHHHHH--G--------GGEEEEESCGGG
T ss_pred CcCEEEEEccccHHHHHHHHHhC-CCcCCeEEEEECCHHHHHHHHHhc--C--------CCcEEEECChhc
Confidence 47799999999999999998665 44 999999 99999999883 1 146666655544
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.6e-05 Score=64.81 Aligned_cols=97 Identities=21% Similarity=0.148 Sum_probs=62.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCC------Cc----c
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEA------EA----N 174 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~------~~----~ 174 (282)
.++|||+||| .-++.+|+..+++|+.+|. ++..+.+++|++.++.. ..+++.+...+..+. .. .
T Consensus 31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---EGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---TTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCCceEEEEeCchhhhcccccccchhhh
Confidence 5699999984 6778777533689999999 99999999999987731 034566665442221 00 0
Q ss_pred chh-------hc--CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 175 DVA-------VV--GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 175 ~~~-------~~--~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++ .. ..+||+|+.--- .....+..+.++|++|
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~G 147 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRP 147 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSC
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCC
Confidence 011 11 268999998321 1224444455888887
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-06 Score=74.07 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=41.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCE--EEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAK--VTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~--V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
++.+|||||||+|.++. ++ . +.+ |+++|+ +.+++.+++++..+ .++.+...|...
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~--------~~v~~i~~D~~~ 78 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG--------PKLTIYQQDAMT 78 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG--------GGEEEECSCGGG
T ss_pred CcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC--------CceEEEECchhh
Confidence 47799999999999999 65 4 466 999999 99999998766431 245665544433
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-07 Score=81.59 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=50.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~ 182 (282)
++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++++.. ..++.+...|+.+ ++.. ..+
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~-----~~~~~~~~ 94 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQ-----FQFPNKQR 94 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTT-----TTCCCSSE
T ss_pred CCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECChhh-----cCcccCCC
Confidence 4779999999999999999865 589999999 8888888766541 2345555444433 2211 246
Q ss_pred ccEEEEcCccC
Q 023457 183 FDVILASDVVY 193 (282)
Q Consensus 183 fD~Ii~sd~ly 193 (282)
| .|+++.+.+
T Consensus 95 f-~vv~n~Py~ 104 (245)
T 1yub_A 95 Y-KIVGNIPYH 104 (245)
T ss_dssp E-EEEEECCSS
T ss_pred c-EEEEeCCcc
Confidence 7 666655443
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.2e-06 Score=71.36 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=64.4
Q ss_pred CCCCcEEEeCCCC------CHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEE-EEEEeCCCCc
Q 023457 104 GCQLNILELGSGT------GLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHV-APLRWGEAEA 173 (282)
Q Consensus 104 ~~g~~VLELGcGt------G~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~-~~ld~~~~~~ 173 (282)
.++.+|||||||+ |. ..++...+ ++|+++|+ +. + . ++.+ ...|+.+
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~---------~v~~~i~gD~~~--- 117 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------S---------DADSTLIGDCAT--- 117 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------C---------SSSEEEESCGGG---
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------C---------CCEEEEECcccc---
Confidence 4578999999955 55 44444544 79999999 65 1 0 2334 4444433
Q ss_pred cchhhcCCCccEEEEcCccCC-----------CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 174 NDVAVVGREFDVILASDVVYH-----------DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 174 ~~~~~~~~~fD~Ii~sd~ly~-----------~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
+. ...+||+|+++..... ...++.+++.+.++|+|| |.+++...... ....+.+.++
T Consensus 118 --~~-~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG------G~~v~~~~~~~---~~~~l~~~l~ 185 (290)
T 2xyq_A 118 --VH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG------GSIAVKITEHS---WNADLYKLMG 185 (290)
T ss_dssp --CC-CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE------EEEEEEECSSS---CCHHHHHHHT
T ss_pred --CC-ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC------cEEEEEEeccC---CHHHHHHHHH
Confidence 11 1357999998532111 122468899999999998 56555332211 2346666666
Q ss_pred h-cCc
Q 023457 243 K-LFD 246 (282)
Q Consensus 243 ~-~f~ 246 (282)
+ +|.
T Consensus 186 ~~GF~ 190 (290)
T 2xyq_A 186 HFSWW 190 (290)
T ss_dssp TEEEE
T ss_pred HcCCc
Confidence 5 464
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=3e-05 Score=66.94 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=72.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-------C------CEEEEEeh-H---hHHH-----------HHHHHHHhccccc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-------G------AKVTVTDL-P---HVLT-----------NLQFNVDANAGLI-- 154 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-------~------~~V~~tD~-~---~~l~-----------~~~~n~~~n~~~~-- 154 (282)
++.+|||+|+|+|+..+.++... + .+|+++|. + +.+. .++.++..-....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 45799999999999998876542 2 37999998 6 3333 3444444310000
Q ss_pred ----ccCCCcEEEEEEEeCCCCccc-hhhcC----CCccEEEEcCccC---CCC-CHHHHHHHHHHHHhcCCCCCCCceE
Q 023457 155 ----SLRGGSVHVAPLRWGEAEAND-VAVVG----REFDVILASDVVY---HDH-LFDPLLVTLRLFLNSGEPEPKKKKM 221 (282)
Q Consensus 155 ----~~~~~~v~~~~ld~~~~~~~~-~~~~~----~~fD~Ii~sd~ly---~~~-~~~~ll~~l~~ll~~g~~~~~~g~~ 221 (282)
......+. ..+-+++ ..+ ++... ..||+|+. |.+- +++ ..+.+++.+.++|+|| |.+
T Consensus 140 ~~r~~~~~~~~~-l~l~~GD--a~~~l~~~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~pG------G~l 209 (257)
T 2qy6_A 140 CHRLLLDEGRVT-LDLWFGD--INELISQLDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPG------GTL 209 (257)
T ss_dssp EEEEEEC--CEE-EEEEESC--HHHHGGGSCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEEEE------EEE
T ss_pred hhheeccCCceE-EEEEECc--HHHHHhhcccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcCCC------cEE
Confidence 00011111 1233344 222 22222 27999998 5432 222 2467999999999998 333
Q ss_pred EEEEEeecCcccHHHHHHHHh-hcCceEEEccc
Q 023457 222 NFVMAHLRRWKKDSVFFKKAK-KLFDVETIHAD 253 (282)
Q Consensus 222 ~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~~ 253 (282)
+. .. ....+...+. .||.|++++..
T Consensus 210 -~t-ys-----aa~~vrr~L~~aGF~v~~~~g~ 235 (257)
T 2qy6_A 210 -AT-FT-----SAGFVRRGLQEAGFTMQKRKGF 235 (257)
T ss_dssp -EE-SC-----CBHHHHHHHHHHTEEEEEECCS
T ss_pred -EE-Ee-----CCHHHHHHHHHCCCEEEeCCCC
Confidence 32 11 1123334333 58999987643
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.86 E-value=7.3e-06 Score=71.29 Aligned_cols=122 Identities=11% Similarity=0.050 Sum_probs=86.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+..+||+=+|||.+++.+.+ .+.+++++|. +..++.+++|+.. ..++.+...|-... ...+.....+|
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~-L~~l~~~~~~f 160 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSK-LNALLPPPEKR 160 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHH-HHHHCSCTTSC
T ss_pred cCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHH-HHHhcCCCCCc
Confidence 366799999999999999975 5689999999 9999999998864 23566655332110 00111123479
Q ss_pred cEEEEcCccCC-CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYH-DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~-~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
|+|++ |+-|. ...++.+++.+....+.-+ ++++++.+..........|.+.++
T Consensus 161 dLVfi-DPPYe~k~~~~~vl~~L~~~~~r~~-----~Gi~v~WYPi~~~~~~~~~~~~l~ 214 (283)
T 2oo3_A 161 GLIFI-DPSYERKEEYKEIPYAIKNAYSKFS-----TGLYCVWYPVVNKAWTEQFLRKMR 214 (283)
T ss_dssp EEEEE-CCCCCSTTHHHHHHHHHHHHHHHCT-----TSEEEEEEEESSHHHHHHHHHHHH
T ss_pred cEEEE-CCCCCCCcHHHHHHHHHHHhCccCC-----CeEEEEEEeccchHHHHHHHHHHH
Confidence 99999 77776 5688889988887554331 466777777776666778888775
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.5e-05 Score=62.40 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=41.6
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCC-HHHHHHHHHhCCEEEEEeh-HhHHH
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTG-LVGMAAAAILGAKVTVTDL-PHVLT 141 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG-~~si~la~~~~~~V~~tD~-~~~l~ 141 (282)
+.+.|+ .|++||.+... .+.+|||||||.| .++..++...+..|++||+ +.+++
T Consensus 18 ~~~m~e---~LaeYI~~~~~--------------~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 18 GSHMWN---DLAVYIIRCSG--------------PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG 73 (153)
T ss_dssp CCHHHH---HHHHHHHHHSC--------------SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred hhhHHH---HHHHHHHhcCC--------------CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence 455654 58999976542 2569999999999 5999998657889999999 65544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=62.68 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=92.4
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
|...=+++.-|.+..++.. ..++.+|||||||+|-.+..++...+ ..|++.|+ -++....
T Consensus 53 ~~YrSRaA~KL~ei~ek~~-------------l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~p----- 114 (277)
T 3evf_A 53 GVAVSRGTAKLRWFHERGY-------------VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKP----- 114 (277)
T ss_dssp CBCSSTHHHHHHHHHHTTS-------------SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCC-----
T ss_pred CCccccHHHHHHHHHHhCC-------------CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccc-----
Confidence 5566679999999998833 23477999999999999998875433 47888887 3320000
Q ss_pred hcccccccCC-CcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCC-----HH--HHHHHHHHHHhcCCCCCCCce
Q 023457 149 ANAGLISLRG-GSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHL-----FD--PLLVTLRLFLNSGEPEPKKKK 220 (282)
Q Consensus 149 ~n~~~~~~~~-~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~-----~~--~ll~~l~~ll~~g~~~~~~g~ 220 (282)
.... ... ..+.+ . .. .........+||+|++ |+..+... .. .|++.+.++|+||+ |.
T Consensus 115 i~~~---~~g~~ii~~-~---~~--~dv~~l~~~~~DlVls-D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~-----G~ 179 (277)
T 3evf_A 115 MNVQ---SLGWNIITF-K---DK--TDIHRLEPVKCDTLLC-DIGESSSSSVTEGERTVRVLDTVEKWLACGV-----DN 179 (277)
T ss_dssp CCCC---BTTGGGEEE-E---CS--CCTTTSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCC-----SE
T ss_pred cccC---cCCCCeEEE-e---cc--ceehhcCCCCccEEEe-cCccCcCchHHHHHHHHHHHHHHHHHhCCCC-----Ce
Confidence 0000 000 11221 1 11 1111222568999998 44333221 11 35677788999872 23
Q ss_pred EEEEEEeecC-cccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeeec
Q 023457 221 MNFVMAHLRR-WKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 221 ~~il~~~~~~-~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
|++-..+. -.....|++.+++.|.--.+..+ -.......+|.+-+.+
T Consensus 180 --FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KP---aSR~~S~E~Y~V~~~r 227 (277)
T 3evf_A 180 --FCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP---LSRNSTHEMYYVSGAR 227 (277)
T ss_dssp --EEEEESCTTSHHHHHHHHHHHHHHCCEEECCT---TSCTTCCCEEEESSCC
T ss_pred --EEEEecCCCCccHHHHHHHHHHhcCCEEEEeC---CCCCCCCceEEEEecC
Confidence 33333332 23457888888887865444432 2233334577766543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00067 Score=61.21 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=89.1
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGL 153 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~ 153 (282)
.+|++.+..| ...+|.+|||+.||.|.=++.+|.... ..|++.|+ +.-+..+++|+...+..
T Consensus 135 ~aS~l~~~~L----------------~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~ 198 (359)
T 4fzv_A 135 AASLLPVLAL----------------GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPE 198 (359)
T ss_dssp GGGHHHHHHH----------------CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHh----------------CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhh
Confidence 6777777766 234588999999999999988875543 47999999 88899999999876642
Q ss_pred cccCCCcEEEEEEEeCCCCccchh-hcCCCccEEEEc----C---ccCC-CC----------------CHHHHHHHHHHH
Q 023457 154 ISLRGGSVHVAPLRWGEAEANDVA-VVGREFDVILAS----D---VVYH-DH----------------LFDPLLVTLRLF 208 (282)
Q Consensus 154 ~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~fD~Ii~s----d---~ly~-~~----------------~~~~ll~~l~~l 208 (282)
......++.+...|.. .+. .....||.|+.- . .+.. .. ....++....++
T Consensus 199 ~~~~~~~v~v~~~D~~-----~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~ 273 (359)
T 4fzv_A 199 EIRDGNQVRVTSWDGR-----KWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLA 273 (359)
T ss_dssp TTTTSSSEEEECCCGG-----GHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHT
T ss_pred hhccCCceEEEeCchh-----hcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhc
Confidence 1111235555543322 222 124689999962 1 1111 11 123577778888
Q ss_pred HhcCCCCCCCceEEEEEEeecCccc---HHHHHHHH
Q 023457 209 LNSGEPEPKKKKMNFVMAHLRRWKK---DSVFFKKA 241 (282)
Q Consensus 209 l~~g~~~~~~g~~~il~~~~~~~~~---~~~f~~~~ 241 (282)
++|| |.+++..+.....+. ...|++..
T Consensus 274 lkpG------G~LVYsTCSl~~~ENE~vV~~~L~~~ 303 (359)
T 4fzv_A 274 TKPG------GHVVYSTCSLSHLQNEYVVQGAIELL 303 (359)
T ss_dssp EEEE------EEEEEEESCCCTTTTHHHHHHHHHHH
T ss_pred CCCC------cEEEEEeCCCchhhCHHHHHHHHHhC
Confidence 9998 777776665443333 35555543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00088 Score=60.42 Aligned_cols=87 Identities=14% Similarity=0.047 Sum_probs=56.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+|++||||||++|-.+..+++ .+++|+++|...+-..+. . ..+|.+..-|-.. +.....+|
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~-rg~~V~aVD~~~l~~~l~----~--------~~~V~~~~~d~~~-----~~~~~~~~ 271 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVK-RNMWVYSVDNGPMAQSLM----D--------TGQVTWLREDGFK-----FRPTRSNI 271 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHH-TTCEEEEECSSCCCHHHH----T--------TTCEEEECSCTTT-----CCCCSSCE
T ss_pred CCCCEEEEeCcCCCHHHHHHHH-CCCEEEEEEhhhcChhhc----c--------CCCeEEEeCcccc-----ccCCCCCc
Confidence 4689999999999999999974 468999999833222221 1 2345554432221 22224579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++ |+.. ....+...+.+++..+
T Consensus 272 D~vvs-Dm~~---~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 272 SWMVC-DMVE---KPAKVAALMAQWLVNG 296 (375)
T ss_dssp EEEEE-CCSS---CHHHHHHHHHHHHHTT
T ss_pred CEEEE-cCCC---ChHHhHHHHHHHHhcc
Confidence 99988 6653 4566777777777766
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.001 Score=58.28 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=83.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHh-cccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDA-NAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~-n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..++||=||.|.|.+...+++..+ .+|+++|+ +.+++.+++-+.. +.... ...++.+..-|-.. -+.....
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~--~dpRv~v~~~Dg~~----~l~~~~~ 156 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSY--DDPRFKLVIDDGVN----FVNQTSQ 156 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG--GCTTEEEEESCTTT----TTSCSSC
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccccccc--CCCcEEEEechHHH----HHhhccc
Confidence 367999999999999988875443 69999999 9999999887642 22111 24567776544333 2223357
Q ss_pred CccEEEE--cCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc--ccHHHHHHHHhhcCceEEE
Q 023457 182 EFDVILA--SDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW--KKDSVFFKKAKKLFDVETI 250 (282)
Q Consensus 182 ~fD~Ii~--sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~--~~~~~f~~~~~~~f~ve~v 250 (282)
+||+||. .|...... .-..+++.+++.|+|+ ++++.-....-+ .......+.+.+-|..-..
T Consensus 157 ~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~-------Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~ 224 (294)
T 3o4f_A 157 TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPG-------GIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF 224 (294)
T ss_dssp CEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEE-------EEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEE
T ss_pred cCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCC-------CEEEEecCCcccChHHHHHHHHHHHhhCCceee
Confidence 8999996 23222111 1357889999999998 433333222222 2234455666667755433
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0048 Score=58.53 Aligned_cols=155 Identities=13% Similarity=-0.029 Sum_probs=93.0
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh--------------CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEE
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL--------------GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLR 167 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~--------------~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld 167 (282)
...+.+|+|-.||||..-+.+.... ...+++.|+ +.+...++-|+..++.. .. .+.
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~----~~-----~I~ 285 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE----YP-----RID 285 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS----CC-----EEE
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc----cc-----ccc
Confidence 4567799999999999887776432 246999999 99999999999887742 11 233
Q ss_pred eCCCCccchh--hcCCCccEEEEcCccCCCC---------------C-HHHHHHHHHHHHh-------cCCCCCCCceEE
Q 023457 168 WGEAEANDVA--VVGREFDVILASDVVYHDH---------------L-FDPLLVTLRLFLN-------SGEPEPKKKKMN 222 (282)
Q Consensus 168 ~~~~~~~~~~--~~~~~fD~Ii~sd~ly~~~---------------~-~~~ll~~l~~ll~-------~g~~~~~~g~~~ 222 (282)
+++....... ....+||+||++.++-... . .-.++..+.+.|+ +| |+++
T Consensus 286 ~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g------Gr~a 359 (530)
T 3ufb_A 286 PENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG------GRAA 359 (530)
T ss_dssp CSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC------CEEE
T ss_pred ccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC------ceEE
Confidence 4442111111 1134799999998874211 1 1235566666665 45 7888
Q ss_pred EEEEee--cCcccHHHHHHHHhhcCceEEEcccCC--C-CCcccceEEEEEeeec
Q 023457 223 FVMAHL--RRWKKDSVFFKKAKKLFDVETIHADLP--C-NGARVGVVVYRMTGKA 272 (282)
Q Consensus 223 il~~~~--~~~~~~~~f~~~~~~~f~ve~v~~~~~--~-~~~~~~~~v~~~~~~~ 272 (282)
+++++. -+......+-+.+.+.+.++.|-.-+. + ........|+.+.|++
T Consensus 360 vVlP~g~Lf~~~~~~~iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~Il~~~K~~ 414 (530)
T 3ufb_A 360 VVVPNGTLFSDGISARIKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFFDRSG 414 (530)
T ss_dssp EEEEHHHHHCCTHHHHHHHHHHHHSEEEEEEECCTTTTTTTCCCCEEEEEEESSS
T ss_pred EEecchhhhccchHHHHHHHHhhcCEEEEEEECCcccCcCCCCCcEEEEEEECCC
Confidence 888752 121223444444545567765543222 1 1133445677777654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00027 Score=62.06 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=40.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
.+|..|||++||+|..+++++ ..+.+++++|+ +.+++.+++|+...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~-~~g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAA-RWGRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 458899999999999999987 56789999999 99999999998753
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0035 Score=54.19 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=93.1
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
|...=+++.-|.+..++..- .++.+|||||||+|-.+..++...+ ..|+++|+ ..+....
T Consensus 69 g~YrSRAAfKL~ei~eK~~L-------------k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~p----- 130 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERGYV-------------KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKP----- 130 (282)
T ss_dssp SBCSSTHHHHHHHHHHTTSC-------------CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCC-----
T ss_pred CCEecHHHHHHHHHHHhcCC-------------CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccc-----
Confidence 55566799999999987532 3477999999999999999874444 57889998 4321000
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCC-----H--HHHHHHHHHHHhcCCCCCCCceE
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHL-----F--DPLLVTLRLFLNSGEPEPKKKKM 221 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~-----~--~~ll~~l~~ll~~g~~~~~~g~~ 221 (282)
........++.... .. .........++|+|++ |+..+... . -.|+..+..+|+||+ ++
T Consensus 131 ---i~~~~~g~~ii~~~---~~--~dv~~l~~~~~DvVLS-DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~-----~G- 195 (282)
T 3gcz_A 131 ---IMRTTLGWNLIRFK---DK--TDVFNMEVIPGDTLLC-DIGESSPSIAVEEQRTLRVLNCAKQWLQEGN-----YT- 195 (282)
T ss_dssp ---CCCCBTTGGGEEEE---CS--CCGGGSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHC-----CC-
T ss_pred ---cccccCCCceEEee---CC--cchhhcCCCCcCEEEe-cCccCCCChHHHHHHHHHHHHHHHHHcCCCC-----CC-
Confidence 00000011111110 01 0111223568999998 44443222 1 135667778898861 13
Q ss_pred EEEEEeecC-cccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeeec
Q 023457 222 NFVMAHLRR-WKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 222 ~il~~~~~~-~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
.|++-..+. ......|++.+++.|.--.+..+ -.......+|.+-+.+
T Consensus 196 ~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KP---aSR~~S~E~Y~V~~~r 244 (282)
T 3gcz_A 196 EFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVP---LSRNSTHEMYWVSGTR 244 (282)
T ss_dssp EEEEEESCCCSHHHHHHHHHHHHHHCCEEECCT---TSCTTCCCEEEETTCC
T ss_pred cEEEEEecCCCccHHHHHHHHHHhcCCEEEEcC---CCcccCcceeEEEecC
Confidence 344433342 23457888888887765444432 2233334577766543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00041 Score=62.93 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHH--------Hh--------CCEEEEEeh-HhHHHHHHHHHHhccccc------ccCCCcE
Q 023457 105 CQLNILELGSGTGLVGMAAAA--------IL--------GAKVTVTDL-PHVLTNLQFNVDANAGLI------SLRGGSV 161 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~--------~~--------~~~V~~tD~-~~~l~~~~~n~~~n~~~~------~~~~~~v 161 (282)
+..+|+|||||+|..++.++. .+ ..+|...|+ ......+=+.+....... .......
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 467999999999999988732 11 247889998 554444444333211000 0000000
Q ss_pred EEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC--------------------------------------CHHHHHH
Q 023457 162 HVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH--------------------------------------LFDPLLV 203 (282)
Q Consensus 162 ~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~--------------------------------------~~~~ll~ 203 (282)
.+....=+... ....+..+||+|+++-++++.. ++..+++
T Consensus 132 ~f~~gvpgSFy--~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~ 209 (374)
T 3b5i_A 132 YFVAGVPGSFY--RRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR 209 (374)
T ss_dssp SEEEEEESCTT--SCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhh--cccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 1112367999999999999855 3445688
Q ss_pred HHHHHHhcCCCCCCCceEEEEEEeec
Q 023457 204 TLRLFLNSGEPEPKKKKMNFVMAHLR 229 (282)
Q Consensus 204 ~l~~ll~~g~~~~~~g~~~il~~~~~ 229 (282)
...+.|+|| |++++.+....
T Consensus 210 ~ra~eL~pG------G~mvl~~~gr~ 229 (374)
T 3b5i_A 210 ARAAEVKRG------GAMFLVCLGRT 229 (374)
T ss_dssp HHHHHEEEE------EEEEEEEEECC
T ss_pred HHHHHhCCC------CEEEEEEecCC
Confidence 889999999 77777666443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.01 Score=50.70 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=85.7
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
|...=+++.-|.+.-++.. ..++.+||||||+.|..+..++...+ ..|.+.++ .+. .
T Consensus 52 g~yRSRAayKL~EIdeK~l-------------ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~------- 110 (269)
T 2px2_A 52 GHPVSRGTAKLRWLVERRF-------------VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H------- 110 (269)
T ss_dssp SCCSSTHHHHHHHHHHTTS-------------CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------
T ss_pred CCcccHHHHHHHHHHHcCC-------------CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------
Confidence 5556678888988887742 24589999999999999999986521 23334433 110 0
Q ss_pred hcccccccC--C-CcEEEEEE-EeCCCCccchhhcCCCccEEEEcCccCCCCC----HH---HHHHHHHHHHhcCCCCCC
Q 023457 149 ANAGLISLR--G-GSVHVAPL-RWGEAEANDVAVVGREFDVILASDVVYHDHL----FD---PLLVTLRLFLNSGEPEPK 217 (282)
Q Consensus 149 ~n~~~~~~~--~-~~v~~~~l-d~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~----~~---~ll~~l~~ll~~g~~~~~ 217 (282)
.+. .... . .-+.+... |+.. + ...++|+|++ |+--.... .. .++..+.+.|+++
T Consensus 111 ~~P--~~~~~~Gv~~i~~~~G~Df~~-----~--~~~~~DvVLS-DMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~g----- 175 (269)
T 2px2_A 111 EEP--MLMQSYGWNIVTMKSGVDVFY-----K--PSEISDTLLC-DIGESSPSAEIEEQRTLRILEMVSDWLSRG----- 175 (269)
T ss_dssp CCC--CCCCSTTGGGEEEECSCCGGG-----S--CCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred cCC--CcccCCCceEEEeeccCCccC-----C--CCCCCCEEEe-CCCCCCCccHHHHHHHHHHHHHHHHHhhcC-----
Confidence 000 0000 0 11222221 3322 1 1357999997 44333221 11 1466667889998
Q ss_pred Cc-eEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeee
Q 023457 218 KK-KMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 218 ~g-~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~ 271 (282)
| .+++ =...........|++.+++.|..-.+ .+| ........+|.+-+.
T Consensus 176 -G~~Fvv-KVFqg~~~~~~~~l~~lk~~F~~vkv--k~p-aSR~~S~E~YlVa~~ 225 (269)
T 2px2_A 176 -PKEFCI-KILCPYMPKVIEKLESLQRRFGGGLV--RVP-LSRNSNHEMYWVSGA 225 (269)
T ss_dssp -CSEEEE-EESCTTSHHHHHHHHHHHHHHCCEEE--CCT-TSCTTCCCEEEETTC
T ss_pred -CcEEEE-EECCCCchHHHHHHHHHHHHcCCEEE--ECC-CCCCCCccEEEEecc
Confidence 5 3333 22222223456667788887866554 222 323333456766554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0034 Score=57.06 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=64.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHH-------------h----C-CEEEEEehH-h----HHHHH---HHHHH-hcccccccCC
Q 023457 106 QLNILELGSGTGLVGMAAAAI-------------L----G-AKVTVTDLP-H----VLTNL---QFNVD-ANAGLISLRG 158 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~-------------~----~-~~V~~tD~~-~----~l~~~---~~n~~-~n~~~~~~~~ 158 (282)
..+|+||||++|..++.+... . + .+|+..|+| . +...+ ...+. .++.. .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~----~ 128 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRK----I 128 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCC----T
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCC----C
Confidence 568999999999999988755 1 1 478999984 2 22222 22221 11110 1
Q ss_pred CcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHH---------------------------------------
Q 023457 159 GSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFD--------------------------------------- 199 (282)
Q Consensus 159 ~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~--------------------------------------- 199 (282)
..+-+.. .=+.. .....+..++|+|+++.+++|....+
T Consensus 129 ~~~f~~g-vpgSF--y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~ 205 (384)
T 2efj_A 129 GSCLIGA-MPGSF--YSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT 205 (384)
T ss_dssp TSEEEEE-CCSCT--TSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred CceEEEe-cchhh--hhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence 1121111 11111 11122367899999999999744322
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEEEeecC
Q 023457 200 PLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR 230 (282)
Q Consensus 200 ~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~ 230 (282)
.+++...+-|+|| |++++.+....+
T Consensus 206 ~FL~~Ra~eL~pG------G~mvl~~~gr~~ 230 (384)
T 2efj_A 206 TFLRIHSEELISR------GRMLLTFICKED 230 (384)
T ss_dssp HHHHHHHHHEEEE------EEEEEEEECCCT
T ss_pred HHHHHHHHHhccC------CeEEEEEecCCC
Confidence 1255668899999 787777765444
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0013 Score=59.51 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh-ccccc-ccCCCcEEEEEEEeCCCCcc--chhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA-NAGLI-SLRGGSVHVAPLRWGEAEAN--DVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~-n~~~~-~~~~~~v~~~~ld~~~~~~~--~~~~~ 179 (282)
+.++||=||.|.|.....+.+....+|+++|+ +.+++.+++-... ++... .+...++++.. +++... .....
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii---~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLI---EDCIPVLKRYAKE 281 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEE---SCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeeh---HHHHHHHHhhhhc
Confidence 46899999999999998887655679999999 9999999876432 11000 00122344443 331100 11122
Q ss_pred CCCccEEEEcCccC---CC-----C---CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc-ccHHHHHHHHhhcCc
Q 023457 180 GREFDVILASDVVY---HD-----H---LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW-KKDSVFFKKAKKLFD 246 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly---~~-----~---~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~-~~~~~f~~~~~~~f~ 246 (282)
..+||+||. |+.- .. . -...+++.+++.|+++ ++++.-...... .....+.+.+++-|.
T Consensus 282 ~~~yDvIIv-Dl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~-------GVlv~Q~~s~~~~~~~~~i~~tl~~vF~ 352 (381)
T 3c6k_A 282 GREFDYVIN-DLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD-------GKYFTQGNCVNLTEALSLYEEQLGRLYC 352 (381)
T ss_dssp TCCEEEEEE-ECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE-------EEEEEEEEETTCHHHHHHHHHHHTTSSS
T ss_pred cCceeEEEE-CCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC-------CEEEEecCCCcchhHHHHHHHHHHHhCC
Confidence 468999997 3321 10 0 1246778889999998 433332222221 224555666666553
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.021 Score=49.65 Aligned_cols=149 Identities=13% Similarity=0.041 Sum_probs=84.9
Q ss_pred ccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-Hh-HH-HHHHH
Q 023457 70 LSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PH-VL-TNLQF 145 (282)
Q Consensus 70 ~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~-~l-~~~~~ 145 (282)
.|..+=+++.-|.+...+... .++.+||||||++|-.+..++...+ ..|+++|+ .. -. ..+..
T Consensus 72 ~g~y~SR~~~KL~ei~~~~~l-------------~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ 138 (321)
T 3lkz_A 72 GGHPVSRGTAKLRWLVERRFL-------------EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQ 138 (321)
T ss_dssp SCCCSSTHHHHHHHHHHTTSC-------------CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCC
T ss_pred CCCccchHHHHHHHHHHhcCC-------------CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhh
Confidence 366677789999988877432 3477999999999999998775544 57999998 32 10 00000
Q ss_pred HHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHH-------HHHHHHHHHHhcCCCCCCC
Q 023457 146 NVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFD-------PLLVTLRLFLNSGEPEPKK 218 (282)
Q Consensus 146 n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~-------~ll~~l~~ll~~g~~~~~~ 218 (282)
.+. + .-+.+..- .+ ...+. ..++|+|+| |+-....... .+|+.+...|++++
T Consensus 139 ql~--------w-~lV~~~~~--~D--v~~l~--~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~----- 197 (321)
T 3lkz_A 139 SYG--------W-NIVTMKSG--VD--VFYRP--SECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGP----- 197 (321)
T ss_dssp BTT--------G-GGEEEECS--CC--TTSSC--CCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred hcC--------C-cceEEEec--cC--HhhCC--CCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCC-----
Confidence 000 0 11222211 00 11111 256999887 5554433311 25556677888772
Q ss_pred ceEEEEEEeecCc-ccHHHHHHHHhhcCceEEEcccC
Q 023457 219 KKMNFVMAHLRRW-KKDSVFFKKAKKLFDVETIHADL 254 (282)
Q Consensus 219 g~~~il~~~~~~~-~~~~~f~~~~~~~f~ve~v~~~~ 254 (282)
+.+++ =-...| +...++++.++..|.--.+.-+.
T Consensus 198 ~~f~~--KVl~pY~~~v~e~l~~lq~~fgg~lvr~P~ 232 (321)
T 3lkz_A 198 REFCV--KVLCPYMPKVIEKMELLQRRYGGGLVRNPL 232 (321)
T ss_dssp CEEEE--EESCTTSHHHHHHHHHHHHHHCCEEECCTT
T ss_pred CcEEE--EEcCCCChHHHHHHHHHHHHhCCEeEeCCC
Confidence 33333 122222 34568888888877666655443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=55.76 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=40.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
.+|..|||..||+|..+++++ ..+.+++++|+ +.+++.+++|+..++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~-~~gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred CCCCEEEECCCCCCHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 357899999999999999986 67899999999 999999999988664
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.017 Score=50.26 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=92.0
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
|...=+++.-|.+..++ . ...++++||||||++|..+..++...+ ..|+++|+ ..+..
T Consensus 60 g~yrSRaa~KL~ei~ek-~------------l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~------- 119 (300)
T 3eld_A 60 GISVSRGAAKIRWLHER-G------------YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE------- 119 (300)
T ss_dssp CCCSSTTHHHHHHHHHH-T------------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC-------
T ss_pred CCccchHHHHHHHHHHh-C------------CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc-------
Confidence 55566789999999987 3 124689999999999999999985433 57889998 43210
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCH-------HHHHHHHHHHHhcCCCCCCCceE
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLF-------DPLLVTLRLFLNSGEPEPKKKKM 221 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~-------~~ll~~l~~ll~~g~~~~~~g~~ 221 (282)
...........+... . .. .........++|+|++ |+.-+.... -.|+..+..+|++|+ +
T Consensus 120 -~P~~~~~~~~~iv~~--~-~~--~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~------G- 185 (300)
T 3eld_A 120 -KPIHMQTLGWNIVKF--K-DK--SNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNT------E- 185 (300)
T ss_dssp -CCCCCCBTTGGGEEE--E-CS--CCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTC------C-
T ss_pred -ccccccccCCceEEe--e-cC--ceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCC------C-
Confidence 000000001111111 1 00 0111112468999998 555443221 245777778898871 2
Q ss_pred EEEEEeecC-cccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeee
Q 023457 222 NFVMAHLRR-WKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 222 ~il~~~~~~-~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~ 271 (282)
.|++-..+. ......|+..++..|.--.+..+ -.......+|.+-+.
T Consensus 186 ~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~KP---aSR~~S~E~Y~V~~~ 233 (300)
T 3eld_A 186 NFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP---FSRNSTHEMYYISGA 233 (300)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHHHCCEEECCT---TSCTTCCCEEEESSC
T ss_pred cEEEEeccccCccHHHHHHHHHHhCCcEEEEeC---CCCCCChHHeeeccC
Confidence 344433332 23457788888887765444422 222233456766544
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0024 Score=55.67 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=65.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh------CCEEEEEeh-Hh--------------------------HHHHHHHHHHhccc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL------GAKVTVTDL-PH--------------------------VLTNLQFNVDANAG 152 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~------~~~V~~tD~-~~--------------------------~l~~~~~n~~~n~~ 152 (282)
.++|||+|+..|..++.+|..+ ..+|+++|. .. .++.+++|++..+.
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 5599999999999998887543 478999995 21 35678888887764
Q ss_pred ccccCCCcEEEEEEEeCCCCccchhhc-CCCccEEEEcCc-cCCCCCHHHHHHHHHHHHhcC
Q 023457 153 LISLRGGSVHVAPLRWGEAEANDVAVV-GREFDVILASDV-VYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~fD~Ii~sd~-ly~~~~~~~ll~~l~~ll~~g 212 (282)
. .+++.+...+..+ .++.. ..+||+|+. |+ .| ......++.+..+|++|
T Consensus 187 ~----~~~I~li~Gda~e----tL~~~~~~~~d~vfI-DaD~y--~~~~~~Le~~~p~L~pG 237 (282)
T 2wk1_A 187 L----DEQVRFLPGWFKD----TLPTAPIDTLAVLRM-DGDLY--ESTWDTLTNLYPKVSVG 237 (282)
T ss_dssp C----STTEEEEESCHHH----HSTTCCCCCEEEEEE-CCCSH--HHHHHHHHHHGGGEEEE
T ss_pred C----cCceEEEEeCHHH----HHhhCCCCCEEEEEE-cCCcc--ccHHHHHHHHHhhcCCC
Confidence 1 2567777644432 22222 358999998 33 22 22345677788888887
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0018 Score=56.22 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=36.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.++..+||.+||.|..+..++.. +++|+++|. +.+++.+++
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh
Confidence 35789999999999999999866 789999999 999999887
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.023 Score=50.79 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..+||||.||+|.+++.+...+ ...|+++|+ +.+++..+.|..
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~ 47 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP 47 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence 3489999999999999997554 247999999 899998888764
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=57.61 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=69.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH----------------h-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEE
Q 023457 105 CQLNILELGSGTGLVGMAAAAI----------------L-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPL 166 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~----------------~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~l 166 (282)
...+|+||||++|..++.+... . ..+|+..|+ ......+-+++..... ....+ +...
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~----~~~~~-f~~g 125 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND----VDGVC-FING 125 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS----CTTCE-EEEE
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc----cCCCE-EEEe
Confidence 3468999999999988765432 0 147999999 6666666555432110 00111 1111
Q ss_pred EeCCCCccchhhcCCCccEEEEcCccCCCCC---------------------------------HHHHHHHHHHHHhcCC
Q 023457 167 RWGEAEANDVAVVGREFDVILASDVVYHDHL---------------------------------FDPLLVTLRLFLNSGE 213 (282)
Q Consensus 167 d~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~---------------------------------~~~ll~~l~~ll~~g~ 213 (282)
.=+... ....+..++|+|+++.+++|-.. +..+++...+-|+||
T Consensus 126 vpgSFy--~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pG- 202 (359)
T 1m6e_X 126 VPGSFY--GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG- 202 (359)
T ss_dssp EESCSS--SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT-
T ss_pred cchhhh--hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 112211 11223678999999999887432 234588889999999
Q ss_pred CCCCCceEEEEEEeecC
Q 023457 214 PEPKKKKMNFVMAHLRR 230 (282)
Q Consensus 214 ~~~~~g~~~il~~~~~~ 230 (282)
|++++.+....+
T Consensus 203 -----G~mvl~~~gr~~ 214 (359)
T 1m6e_X 203 -----GRMVLTILGRRS 214 (359)
T ss_dssp -----CEEEEEEEECSS
T ss_pred -----ceEEEEEecCCC
Confidence 788777765444
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0013 Score=72.79 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=42.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
+..+|||||+|+|..+..+...+. .+++.||+ +...+.+++....- .+. .-.|....+ ..
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------di~--~~~~d~~~~--~~ 1306 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------HVT--QGQWDPANP--AP 1306 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------TEE--EECCCSSCC--CC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------ccc--ccccccccc--cc
Confidence 467999999999976554443432 37999999 76666665544321 111 111211001 01
Q ss_pred hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 178 VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.....||+||++.+++...+....+..++++|+|+
T Consensus 1307 ~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~ 1341 (2512)
T 2vz8_A 1307 GSLGKADLLVCNCALATLGDPAVAVGNMAATLKEG 1341 (2512)
T ss_dssp -----CCEEEEECC--------------------C
T ss_pred CCCCceeEEEEcccccccccHHHHHHHHHHhcCCC
Confidence 12357999999999998888889999999999998
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.15 Score=46.06 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=49.6
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---cCCC
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV---VGRE 182 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~---~~~~ 182 (282)
.+||||-||+|.+++.+..++...|.++|+ +.+++..+.|... ..+...|..+....++.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR-----------SLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT-----------SEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC-----------CceEecChhhcCHHHHHhhcccCCC
Confidence 489999999999999987655456789999 8888888877431 122222333321111110 1357
Q ss_pred ccEEEEcCccC
Q 023457 183 FDVILASDVVY 193 (282)
Q Consensus 183 fD~Ii~sd~ly 193 (282)
+|+|+++.+.-
T Consensus 72 ~D~i~ggpPCQ 82 (376)
T 3g7u_A 72 IDGIIGGPPCQ 82 (376)
T ss_dssp CCEEEECCCCC
T ss_pred eeEEEecCCCC
Confidence 99999986643
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.036 Score=50.73 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=40.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHH-HHhC--CEEEEEeh-HhHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAA-AILG--AKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la-~~~~--~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.++.+|+|+||+.|..++.++ +..+ ++|++++. +...+.+++|+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 578899999999999999887 4443 69999999 9999999999998
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.02 Score=51.42 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=37.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~ 147 (282)
++.+|||||.|.|.++..++... +++|+++++ +.++..++...
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~ 102 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 102 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence 36789999999999999998654 579999999 88888888765
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.015 Score=49.00 Aligned_cols=159 Identities=11% Similarity=0.064 Sum_probs=87.4
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
|..+=+++.-|.+...+... .++.+||||||++|-.+..++...+ .+|+++|+ ..--
T Consensus 57 g~yrSRa~~KL~ei~ek~~l-------------~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-------- 115 (267)
T 3p8z_A 57 HHAVSRGSAKLQWFVERNMV-------------IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-------- 115 (267)
T ss_dssp SCCSSTHHHHHHHHHHTTSS-------------CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS--------
T ss_pred CCccchHHHHHHHHHHhcCC-------------CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc--------
Confidence 55566688888888877632 3477999999999999998875544 57999998 4210
Q ss_pred hccccc-ccCCCcEEEEEE-EeCCCCccchhhcCCCccEEEEcCccCCCCCHH----H---HHHHHHHHHhcCCCCCCCc
Q 023457 149 ANAGLI-SLRGGSVHVAPL-RWGEAEANDVAVVGREFDVILASDVVYHDHLFD----P---LLVTLRLFLNSGEPEPKKK 219 (282)
Q Consensus 149 ~n~~~~-~~~~~~v~~~~l-d~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~----~---ll~~l~~ll~~g~~~~~~g 219 (282)
.+.... ...-+.+.+... |. ......++|+|+| |+-....... . +++.+.+.|+++
T Consensus 116 e~P~~~~s~gwn~v~fk~gvDv-------~~~~~~~~Dtllc-DIgeSs~~~~vE~~RtlrvLela~~wL~~~------- 180 (267)
T 3p8z_A 116 EEPVPMSTYGWNIVKLMSGKDV-------FYLPPEKCDTLLC-DIGESSPSPTVEESRTIRVLKMVEPWLKNN------- 180 (267)
T ss_dssp CCCCCCCCTTTTSEEEECSCCG-------GGCCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHGGGCSSC-------
T ss_pred cCcchhhhcCcCceEEEeccce-------eecCCccccEEEE-ecCCCCCChhhhhhHHHHHHHHHHHhcccC-------
Confidence 000000 000122333331 21 1112367999998 5544333321 1 344445556654
Q ss_pred eEEEEEEeecCcc-cHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEee
Q 023457 220 KMNFVMAHLRRWK-KDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTG 270 (282)
Q Consensus 220 ~~~il~~~~~~~~-~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~ 270 (282)
.+++ =-...+. ...++++.++..|.--.+.-+.... ..-.+|-+..
T Consensus 181 ~fc~--KVl~py~p~v~e~l~~lq~~fgg~lVR~P~SRn---sThEMY~Vsg 227 (267)
T 3p8z_A 181 QFCI--KVLNPYMPTVIEHLERLQRKHGGMLVRNPLSRN---STHEMYWISN 227 (267)
T ss_dssp EEEE--EESCCCSHHHHHHHHHHHHHHCCEEECCTTSCT---TCCCEEEESS
T ss_pred CEEE--EEccCCChhHHHHHHHHHHHhCCEeEeCCCCCC---CcceEEEEec
Confidence 3333 1122232 2468888888777666655444322 2234666543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.48 Score=41.30 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=59.4
Q ss_pred CCCCcEEEeCCC----CCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch
Q 023457 104 GCQLNILELGSG----TGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 104 ~~g~~VLELGcG----tG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~ 176 (282)
..|.+||||||| +..-+.++.+.++ +.|+++|+ +-. . ...+. ...|... .
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~-s----------------da~~~-IqGD~~~-----~ 164 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFV-S----------------DADST-LIGDCAT-----V 164 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCB-C----------------SSSEE-EESCGGG-----E
T ss_pred cCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccc-c----------------CCCeE-EEccccc-----c
Confidence 348899999984 2222344443444 48999998 421 0 01111 2222111 1
Q ss_pred hhcCCCccEEEEcCccC------------CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhc
Q 023457 177 AVVGREFDVILASDVVY------------HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKL 244 (282)
Q Consensus 177 ~~~~~~fD~Ii~sd~ly------------~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~ 244 (282)
....+||+||+ |+-- .....+.++.-+.+.|++| |.+++=+ .... .. .++..+.+.
T Consensus 165 -~~~~k~DLVIS-DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpG------GsFvVKV-FQGs--g~-~~L~~lrk~ 232 (344)
T 3r24_A 165 -HTANKWDLIIS-DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG------GSIAVKI-TEHS--WN-ADLYKLMGH 232 (344)
T ss_dssp -EESSCEEEEEE-CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEE------EEEEEEE-CSSS--CC-HHHHHHHTT
T ss_pred -ccCCCCCEEEe-cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCC------CEEEEEE-ecCC--CH-HHHHHHHhh
Confidence 12468999997 2211 1124677888888999998 5544422 2222 23 445555566
Q ss_pred CceEE
Q 023457 245 FDVET 249 (282)
Q Consensus 245 f~ve~ 249 (282)
|..-+
T Consensus 233 F~~VK 237 (344)
T 3r24_A 233 FSWWT 237 (344)
T ss_dssp EEEEE
T ss_pred CCeEE
Confidence 75433
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.53 Score=41.68 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=70.1
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 107 LNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+++||-||.|.+++.+...+. ..|.++|+ +.+.+..+.|.... .+..-|+.+....+++ ...+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~-----------~~~~~DI~~~~~~~~~--~~~~ 70 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPET-----------NLLNRNIQQLTPQVIK--KWNV 70 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS-----------CEECCCGGGCCHHHHH--HTTC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCC-----------ceeccccccCCHHHhc--cCCC
Confidence 4899999999999988865442 46889999 88888877765321 1122233332222222 2368
Q ss_pred cEEEEcCccCCC---------CC-HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCccc---HHHHHHHHhh-cCceEE
Q 023457 184 DVILASDVVYHD---------HL-FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKK---DSVFFKKAKK-LFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~~---------~~-~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~---~~~f~~~~~~-~f~ve~ 249 (282)
|+|+++.+.-.. .+ ...++..+.++++.-. +.. +|++-...+... ...+.+.+++ ||.+..
T Consensus 71 D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~----~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~ 145 (333)
T 4h0n_A 71 DTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLD----NVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQE 145 (333)
T ss_dssp CEEEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCT----TCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhc----CCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEE
Confidence 999987554321 11 1124444555554320 012 555555555432 4555555553 777754
Q ss_pred E
Q 023457 250 I 250 (282)
Q Consensus 250 v 250 (282)
.
T Consensus 146 ~ 146 (333)
T 4h0n_A 146 F 146 (333)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=93.42 E-value=0.12 Score=45.71 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=37.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..+.+||||.||+|.+++.+...+...|.++|+ +.+++..+.|..
T Consensus 9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~ 54 (327)
T 2c7p_A 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG 54 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence 456799999999999999987555457889999 889888888864
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.15 E-value=2 Score=37.79 Aligned_cols=125 Identities=13% Similarity=0.064 Sum_probs=72.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC--CEE-EEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILG--AKV-TVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~--~~V-~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+++||-||.|.+++.+...+- ..| .++|+ +.+.+..+.|.... +...|..+....+++ ..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------~~~~DI~~~~~~~i~--~~ 75 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------VQVKNLDSISIKQIE--SL 75 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------CBCCCTTTCCHHHHH--HT
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------cccCChhhcCHHHhc--cC
Confidence 45899999999999998864431 456 79999 88888888876421 111122221122222 13
Q ss_pred CccEEEEcCccCCC-----------CC-HHHHHHHHHH-HHhcC--CCCCCCceEEEEEEeecCccc---HHHHHHHHhh
Q 023457 182 EFDVILASDVVYHD-----------HL-FDPLLVTLRL-FLNSG--EPEPKKKKMNFVMAHLRRWKK---DSVFFKKAKK 243 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~-----------~~-~~~ll~~l~~-ll~~g--~~~~~~g~~~il~~~~~~~~~---~~~f~~~~~~ 243 (282)
.+|+|+++.+.-.. .+ ...|+..+.+ +++.- . .. ++++-...+... ...+.+.+++
T Consensus 76 ~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~-----P~-~~~lENV~gl~~~~~~~~i~~~l~~ 149 (327)
T 3qv2_A 76 NCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINK-----PK-HIFIENVPLFKESLVFKEIYNILIK 149 (327)
T ss_dssp CCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSC-----CS-EEEEEECGGGGGSHHHHHHHHHHHH
T ss_pred CCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccC-----CC-EEEEEchhhhcChHHHHHHHHHHHh
Confidence 68999987653322 12 2346666666 66532 1 13 454544444432 4455555543
Q ss_pred -cCceEEE
Q 023457 244 -LFDVETI 250 (282)
Q Consensus 244 -~f~ve~v 250 (282)
||.+...
T Consensus 150 ~GY~v~~~ 157 (327)
T 3qv2_A 150 NQYYIKDI 157 (327)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 7877643
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.1 Score=46.73 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCc-cchhh-
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEA-NDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~-~~~~~- 178 (282)
.+|.+||-+|||. |...+.+|+..++ +|+++|. ++-++.+++. + . . ..++..+.+. ..+..
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----G------a-~---~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G------A-T---HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T------C-S---EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C------C-C---EEecCCccCHHHHHHHh
Confidence 4588999999985 8888888877777 7999998 7777776542 1 1 1 1122222111 01111
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
....+|+||-+-. ....+....++++++ |+++++
T Consensus 255 ~~gg~D~vid~~g------~~~~~~~~~~~l~~~------G~iv~~ 288 (371)
T 1f8f_A 255 TDGGVNFALESTG------SPEILKQGVDALGIL------GKIAVV 288 (371)
T ss_dssp TTSCEEEEEECSC------CHHHHHHHHHTEEEE------EEEEEC
T ss_pred cCCCCcEEEECCC------CHHHHHHHHHHHhcC------CEEEEe
Confidence 1237999985421 235567777888887 565544
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.89 Score=39.68 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=45.2
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
++||||-||.|.+++.+-+.+-..|.++|+ +.+.+..+.|.. . .+..-|..+....+ ....|+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----------~--~~~~~DI~~i~~~~----~~~~D~ 64 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----------A--KLIKGDISKISSDE----FPKCDG 64 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----------S--EEEESCGGGCCGGG----SCCCSE
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----------C--CcccCChhhCCHhh----CCcccE
Confidence 379999999999998885443356779999 888887777632 1 12222332211111 346899
Q ss_pred EEEcCcc
Q 023457 186 ILASDVV 192 (282)
Q Consensus 186 Ii~sd~l 192 (282)
|+++.+.
T Consensus 65 l~ggpPC 71 (331)
T 3ubt_Y 65 IIGGPPS 71 (331)
T ss_dssp EECCCCG
T ss_pred EEecCCC
Confidence 9987554
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.31 Score=42.85 Aligned_cols=89 Identities=12% Similarity=0.071 Sum_probs=56.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chhhcC
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~~~~ 180 (282)
.+|.+||=+|||. |...+.+|+..+++|+++|. ++-++.+++ .+ .. ..++..+.+.. .+....
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lG-------a~---~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LG-------AE---VAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TT-------CS---EEEETTTSCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cC-------CC---EEEeCCCcCHHHHHHHhC
Confidence 4688999999975 88999998888899999999 777776654 11 11 11233321111 111112
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+.+|+|+-+- -....++...++++++
T Consensus 231 g~~d~vid~~------g~~~~~~~~~~~l~~~ 256 (340)
T 3s2e_A 231 GGAHGVLVTA------VSPKAFSQAIGMVRRG 256 (340)
T ss_dssp SSEEEEEESS------CCHHHHHHHHHHEEEE
T ss_pred CCCCEEEEeC------CCHHHHHHHHHHhccC
Confidence 3789888542 1245677777888887
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.17 Score=45.02 Aligned_cols=42 Identities=33% Similarity=0.477 Sum_probs=33.5
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||-+|||. |+..+.+|+..++ +|+++|. ++-++.+++
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4588999999975 8888888877777 9999998 766666653
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.63 Score=40.72 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=66.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHH---hC--C--EEEEEeh-H--------hHHHHHHHHHHhcccccccCCCcEEEEEEEeC
Q 023457 106 QLNILELGSGTGLVGMAAAAI---LG--A--KVTVTDL-P--------HVLTNLQFNVDANAGLISLRGGSVHVAPLRWG 169 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~---~~--~--~V~~tD~-~--------~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~ 169 (282)
.-+|||+|=|||+..+.+... .. . +++.+|. + ..+..+...+..+.... ...++.. .+-|+
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~--~~~~v~L-~l~~G 173 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY--EGERLSL-KVLLG 173 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE--ECSSEEE-EEEES
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc--cCCcEEE-EEEec
Confidence 458999999999987654422 12 3 3455553 1 11222222222211111 1234433 34556
Q ss_pred CCCccchhhc-CCCccEEEEcCccCCCCC----HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH-hh
Q 023457 170 EAEANDVAVV-GREFDVILASDVVYHDHL----FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA-KK 243 (282)
Q Consensus 170 ~~~~~~~~~~-~~~fD~Ii~sd~ly~~~~----~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~-~~ 243 (282)
+. ...++.. ...||+|+. |.+--..+ -+.+++.+.+++++| +.+. .+. . ....-..+ ..
T Consensus 174 Da-~~~l~~l~~~~~Da~fl-DgFsP~kNPeLWs~e~f~~l~~~~~pg-------g~la-TYt-a----ag~VRR~L~~a 238 (308)
T 3vyw_A 174 DA-RKRIKEVENFKADAVFH-DAFSPYKNPELWTLDFLSLIKERIDEK-------GYWV-SYS-S----SLSVRKSLLTL 238 (308)
T ss_dssp CH-HHHGGGCCSCCEEEEEE-CCSCTTTSGGGGSHHHHHHHHTTEEEE-------EEEE-ESC-C----CHHHHHHHHHT
T ss_pred hH-HHHHhhhcccceeEEEe-CCCCcccCcccCCHHHHHHHHHHhCCC-------cEEE-EEe-C----cHHHHHHHHHC
Confidence 52 1123332 247898887 55432222 258999999999998 3222 211 1 12222233 36
Q ss_pred cCceEEEcc
Q 023457 244 LFDVETIHA 252 (282)
Q Consensus 244 ~f~ve~v~~ 252 (282)
||.|++++-
T Consensus 239 GF~V~k~~G 247 (308)
T 3vyw_A 239 GFKVGSSRE 247 (308)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEecCC
Confidence 999999874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.50 E-value=0.75 Score=40.58 Aligned_cols=42 Identities=33% Similarity=0.404 Sum_probs=33.5
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||-+|+|. |...+.+|+..+++|+++|. ++-++.+++
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 4588999999874 77788888777888999998 776666653
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.42 Score=41.62 Aligned_cols=77 Identities=8% Similarity=-0.002 Sum_probs=48.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCE--EEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAK--VTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~--V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.....+|+||-||.|.+++.+...+... |.++|+ +.+.+..+.|... ..+..-|..+....+++.
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~-----------~~~~~~DI~~i~~~~i~~- 80 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG-----------KIMYVGDVRSVTQKHIQE- 80 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT-----------CEEEECCGGGCCHHHHHH-
T ss_pred cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC-----------CceeCCChHHccHHHhcc-
Confidence 3456799999999999998886443233 689999 8887777766421 122223333322222221
Q ss_pred CCCccEEEEcCc
Q 023457 180 GREFDVILASDV 191 (282)
Q Consensus 180 ~~~fD~Ii~sd~ 191 (282)
...+|+|+++.+
T Consensus 81 ~~~~Dll~ggpP 92 (295)
T 2qrv_A 81 WGPFDLVIGGSP 92 (295)
T ss_dssp TCCCSEEEECCC
T ss_pred cCCcCEEEecCC
Confidence 247999998754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.07 E-value=1.6 Score=39.11 Aligned_cols=107 Identities=19% Similarity=0.074 Sum_probs=64.5
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhc
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDAN 150 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n 150 (282)
..+.|+++ -+||.++.... ..+.+||-|+.+.|.++..++. . .-...+|.--....++.|+..|
T Consensus 18 ~l~a~da~---d~~ll~~~~~~-----------~~~~~~~~~~d~~gal~~~~~~-~-~~~~~~ds~~~~~~~~~n~~~~ 81 (375)
T 4dcm_A 18 PLQAWEAA---DEYLLQQLDDT-----------EIRGPVLILNDAFGALSCALAE-H-KPYSIGDSYISELATRENLRLN 81 (375)
T ss_dssp SCCSCCHH---HHHHHHTTTTC-----------CCCSCEEEECCSSSHHHHHTGG-G-CCEEEESCHHHHHHHHHHHHHT
T ss_pred CCCccchH---HHHHHHhhhhc-----------cCCCCEEEECCCCCHHHHhhcc-C-CceEEEhHHHHHHHHHHHHHHc
Confidence 35799988 45554443211 1356899999999999988763 2 2234467533446788999999
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHh
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLN 210 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~ 210 (282)
++. ...+.+. +..+ .....||+|+. +.++....+...+..++.
T Consensus 82 ~~~----~~~~~~~--~~~~-------~~~~~~~~v~~----~lpk~~~~l~~~L~~l~~ 124 (375)
T 4dcm_A 82 GID----ESSVKFL--DSTA-------DYPQQPGVVLI----KVPKTLALLEQQLRALRK 124 (375)
T ss_dssp TCC----GGGSEEE--ETTS-------CCCSSCSEEEE----ECCSCHHHHHHHHHHHHT
T ss_pred CCC----ccceEec--cccc-------ccccCCCEEEE----EcCCCHHHHHHHHHHHHh
Confidence 863 2223332 2211 22467999887 455666655555555543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.63 E-value=0.25 Score=43.46 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=38.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.+|..|||--||+|..++++. .++.+.+++|+ +...+.++.++..
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~-~~gr~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred CCCCEEEECCCCCCHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 468899999999999999885 67899999999 8888888876653
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=91.49 E-value=0.53 Score=42.62 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=28.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--------CCEEEEEehHhHHHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAIL--------GAKVTVTDLPHVLTNLQF 145 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~--------~~~V~~tD~~~~l~~~~~ 145 (282)
..+|+|+|+|.|.+..-+...+ ..+|+++|.+..+...|+
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~ 128 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ 128 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHH
Confidence 4579999999999976665332 238999999444444444
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.83 Score=40.45 Aligned_cols=97 Identities=22% Similarity=0.146 Sum_probs=59.4
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--- 177 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--- 177 (282)
.+|.+||=+|+|. |...+.+|+..+++ |+++|. ++-++.+++. .. ..+... .......++.
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~---------~~~~~~---~~~~~~~~~~~~v 244 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP---------EVVTHK---VERLSAEESAKKI 244 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT---------TCEEEE---CCSCCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch---------hccccc---ccccchHHHHHHH
Confidence 4588999999975 88888888877876 999998 7777777653 21 111111 1110011111
Q ss_pred -h--cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 178 -V--VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 178 -~--~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
. ....+|+||-+ + --+..+....++++++ |+++++.
T Consensus 245 ~~~t~g~g~Dvvid~--~----g~~~~~~~~~~~l~~~------G~iv~~G 283 (363)
T 3m6i_A 245 VESFGGIEPAVALEC--T----GVESSIAAAIWAVKFG------GKVFVIG 283 (363)
T ss_dssp HHHTSSCCCSEEEEC--S----CCHHHHHHHHHHSCTT------CEEEECC
T ss_pred HHHhCCCCCCEEEEC--C----CChHHHHHHHHHhcCC------CEEEEEc
Confidence 1 13479999853 2 1234567777888888 6666543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.38 E-value=0.34 Score=42.63 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=37.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H---hHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-P---HVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~---~~l~~~~~n~~~ 149 (282)
.+|..|||--||+|..++++. .++.+.+++|+ + ..++.+++++..
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~-~~~r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAI-QEGRNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHH-HHTCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCCCEEEecCCCCCHHHHHHH-HcCCcEEEEECCccHHHHHHHHHHHHHH
Confidence 358899999999999999886 66899999999 8 888888887764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.43 Score=42.63 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=58.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chh--
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVA-- 177 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~-- 177 (282)
.+|.+||=+|+|. |...+.+|+..++ +|+++|. ++-++.+++. +. . ..++....+.. .+.
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga-------~---~vi~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GA-------T---ATVDPSAGDVVEAIAGP 246 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TC-------S---EEECTTSSCHHHHHHST
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC-------C---EEECCCCcCHHHHHHhh
Confidence 4588999999975 8888888877787 8999999 7767766541 11 1 11222221110 111
Q ss_pred --hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 178 --VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 178 --~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
...+.+|+||-+ . -....+....++++++ |+++++
T Consensus 247 ~~~~~gg~Dvvid~--~----G~~~~~~~~~~~l~~~------G~vv~~ 283 (370)
T 4ej6_A 247 VGLVPGGVDVVIEC--A----GVAETVKQSTRLAKAG------GTVVIL 283 (370)
T ss_dssp TSSSTTCEEEEEEC--S----CCHHHHHHHHHHEEEE------EEEEEC
T ss_pred hhccCCCCCEEEEC--C----CCHHHHHHHHHHhccC------CEEEEE
Confidence 112379999853 1 2245677777888887 565554
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=90.74 E-value=1.2 Score=39.42 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=64.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHH-hCCEEEEEehHhHHHHHHHHHHhcccccc---------------cCCCcEEEEEEEeC
Q 023457 106 QLNILELGSGTGLVGMAAAAI-LGAKVTVTDLPHVLTNLQFNVDANAGLIS---------------LRGGSVHVAPLRWG 169 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~-~~~~V~~tD~~~~l~~~~~n~~~n~~~~~---------------~~~~~v~~~~ld~~ 169 (282)
...|+.||||.......+... .+..++=+|.|++++.=++.+..++.... ....+......|..
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~ 177 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 177 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence 568999999999998888643 23567777878888777776665421000 01246677776665
Q ss_pred CCCcc-c-hhh--cCCCccEEEEcCccCC--CCCHHHHHHHHHHHH
Q 023457 170 EAEAN-D-VAV--VGREFDVILASDVVYH--DHLFDPLLVTLRLFL 209 (282)
Q Consensus 170 ~~~~~-~-~~~--~~~~fD~Ii~sd~ly~--~~~~~~ll~~l~~ll 209 (282)
+.+.. . +.. ......++++-.++++ .+....+++.+....
T Consensus 178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~ 223 (334)
T 1rjd_A 178 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF 223 (334)
T ss_dssp CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC
Confidence 52110 0 111 1235677777666654 445778888888776
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=0.7 Score=40.64 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=55.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.+|.+||=+|+|. |+..+.+|+.. +++|+++|. ++-++.+++ .+ ... .++........+..
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lG-------a~~---~i~~~~~~~~~v~~~t 235 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VG-------ADA---AVKSGAGAADAIRELT 235 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TT-------CSE---EEECSTTHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC-------CCE---EEcCCCcHHHHHHHHh
Confidence 4688999999975 88888888776 689999999 777776654 11 111 12222200111111
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
....+|+|+-+ + --...+....++++++
T Consensus 236 ~g~g~d~v~d~--~----G~~~~~~~~~~~l~~~ 263 (345)
T 3jv7_A 236 GGQGATAVFDF--V----GAQSTIDTAQQVVAVD 263 (345)
T ss_dssp GGGCEEEEEES--S----CCHHHHHHHHHHEEEE
T ss_pred CCCCCeEEEEC--C----CCHHHHHHHHHHHhcC
Confidence 12379999853 1 1234677777888887
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.32 E-value=1 Score=39.96 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred CCCcEEEeC-CC-CCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-c
Q 023457 105 CQLNILELG-SG-TGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-V 179 (282)
Q Consensus 105 ~g~~VLELG-cG-tG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~ 179 (282)
+|.+||=+| +| .|...+.+|+. .+++|+++|. ++-++.+++ .+ .+. .++..+.....+.. .
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lG------ad~----vi~~~~~~~~~v~~~~ 236 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LG------AHH----VIDHSKPLAAEVAALG 236 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TT------CSE----EECTTSCHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cC------CCE----EEeCCCCHHHHHHHhc
Confidence 588999998 65 48899999876 4789999999 776776654 12 111 12222210111111 1
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
...+|+|+-+ .--...+....++++++ |+++++
T Consensus 237 ~~g~Dvvid~------~g~~~~~~~~~~~l~~~------G~iv~~ 269 (363)
T 4dvj_A 237 LGAPAFVFST------THTDKHAAEIADLIAPQ------GRFCLI 269 (363)
T ss_dssp SCCEEEEEEC------SCHHHHHHHHHHHSCTT------CEEEEC
T ss_pred CCCceEEEEC------CCchhhHHHHHHHhcCC------CEEEEE
Confidence 3479988853 22345677788889988 666554
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.12 E-value=1.1 Score=40.41 Aligned_cols=42 Identities=26% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|+|. |+..+.+|+..++ +|+++|. +.-++.+++
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~ 256 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE 256 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4688999999975 7788888877787 9999998 777776654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=87.66 E-value=0.92 Score=39.93 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCCcEEEe-CCC-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cC
Q 023457 105 CQLNILEL-GSG-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VG 180 (282)
Q Consensus 105 ~g~~VLEL-GcG-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~ 180 (282)
+|.+||=+ |+| .|+..+.+|+..+++|+++|. ++-++.+++. + .+. .++..+.....+.. ..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----G------a~~----vi~~~~~~~~~~~~~~~ 215 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----G------ADI----VLNHKESLLNQFKTQGI 215 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----T------CSE----EECTTSCHHHHHHHHTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----C------CcE----EEECCccHHHHHHHhCC
Confidence 58899999 455 488888888878899999999 7777776651 1 111 11221100111111 13
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+|+|+-+ ..-...+..+.++++++
T Consensus 216 ~g~Dvv~d~------~g~~~~~~~~~~~l~~~ 241 (346)
T 3fbg_A 216 ELVDYVFCT------FNTDMYYDDMIQLVKPR 241 (346)
T ss_dssp CCEEEEEES------SCHHHHHHHHHHHEEEE
T ss_pred CCccEEEEC------CCchHHHHHHHHHhccC
Confidence 479999863 12345667777888887
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=87.40 E-value=1.3 Score=39.23 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=53.9
Q ss_pred CcEEEeCCCC-CHHH-HHHH-HHhCCE-EEEEeh-Hh---HHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 107 LNILELGSGT-GLVG-MAAA-AILGAK-VTVTDL-PH---VLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 107 ~~VLELGcGt-G~~s-i~la-~~~~~~-V~~tD~-~~---~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
.+||=+|+|. |+.. +.+| +..+++ |+++|. ++ -++.+++ .+ . ... +..+.+...+..
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lG-------a--~~v--~~~~~~~~~i~~ 238 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LD-------A--TYV--DSRQTPVEDVPD 238 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TT-------C--EEE--ETTTSCGGGHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cC-------C--ccc--CCCccCHHHHHH
Confidence 8999999864 7777 7777 666776 999999 66 6666653 11 1 111 333211111111
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
..+.+|+||-+ . -....+....++++++ |+++++.
T Consensus 239 ~~gg~Dvvid~--~----g~~~~~~~~~~~l~~~------G~iv~~g 273 (357)
T 2b5w_A 239 VYEQMDFIYEA--T----GFPKHAIQSVQALAPN------GVGALLG 273 (357)
T ss_dssp HSCCEEEEEEC--S----CCHHHHHHHHHHEEEE------EEEEECC
T ss_pred hCCCCCEEEEC--C----CChHHHHHHHHHHhcC------CEEEEEe
Confidence 12378998853 2 1234566777788887 5655543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.25 E-value=0.56 Score=42.26 Aligned_cols=41 Identities=34% Similarity=0.399 Sum_probs=33.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~ 144 (282)
.+|.+||-+|||. |+..+.+|+..++ +|+++|. ++-++.++
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 4688999999986 8888888877787 9999998 77666664
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.60 E-value=0.8 Score=40.60 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=35.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~ 144 (282)
.+|..++|..||.|--+..++...+ ++|+++|. +.+++.++
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 4588999999999999999986653 69999999 99998874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=85.49 E-value=1.5 Score=38.89 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=57.9
Q ss_pred CCCCcEEEeC-CC-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chhh-
Q 023457 104 GCQLNILELG-SG-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVAV- 178 (282)
Q Consensus 104 ~~g~~VLELG-cG-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~~- 178 (282)
.+|.+||=+| +| .|...+.+|+..+++|+++|. ++-++.+++ .+ . . ..++..+.+.. .+..
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~G------a-~---~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LG------C-D---RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TT------C-S---EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cC------C-c---EEEecCChhHHHHHHHh
Confidence 4588999999 34 688888888888899999998 766666654 11 1 1 11232221111 1111
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
....+|+||-+-. . ..+..+.++++++ |+++++.
T Consensus 228 ~~~g~D~vid~~g-----~--~~~~~~~~~l~~~------G~iv~~g 261 (362)
T 2c0c_A 228 YPEGVDVVYESVG-----G--AMFDLAVDALATK------GRLIVIG 261 (362)
T ss_dssp CTTCEEEEEECSC-----T--HHHHHHHHHEEEE------EEEEECC
T ss_pred cCCCCCEEEECCC-----H--HHHHHHHHHHhcC------CEEEEEe
Confidence 1346999986422 1 4566777788887 5655543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.71 E-value=4.8 Score=34.76 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=31.9
Q ss_pred CCCCcEEEeC-CC-CCHHHHHHHHHhCCEEEEEehHhHHHHHHH
Q 023457 104 GCQLNILELG-SG-TGLVGMAAAAILGAKVTVTDLPHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELG-cG-tG~~si~la~~~~~~V~~tD~~~~l~~~~~ 145 (282)
.+|.+||=+| +| .|+..+.+|+..+++|++++.+.-++.+++
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~ 194 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKA 194 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHH
Confidence 4688999997 66 488898998888899999987333555543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.25 E-value=1.3 Score=39.63 Aligned_cols=100 Identities=22% Similarity=0.234 Sum_probs=60.4
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCC--ccchhh
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAE--ANDVAV 178 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~--~~~~~~ 178 (282)
.+|.+||=+|||. |+..+.+|+..++ .|+++|. ++-++.+++ .+ . . .++....+ ...+..
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lG-------a--~--~i~~~~~~~~~~~v~~ 248 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QG-------F--E--IADLSLDTPLHEQIAA 248 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TT-------C--E--EEETTSSSCHHHHHHH
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cC-------C--c--EEccCCcchHHHHHHH
Confidence 4688999999975 8888888877777 7999998 777777654 11 1 1 23333211 011111
Q ss_pred -c-CCCccEEEEcCcc---------CCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 179 -V-GREFDVILASDVV---------YHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 179 -~-~~~fD~Ii~sd~l---------y~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
. ...+|+||-+-.. ++.......+....++++++ |+++++
T Consensus 249 ~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------G~iv~~ 299 (398)
T 1kol_A 249 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA------GKIGIP 299 (398)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE------EEEEEC
T ss_pred HhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC------CEEEEe
Confidence 1 2469999854221 11222334677777888887 565544
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.04 E-value=1.4 Score=39.31 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=33.8
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||-+|+|. |+..+.+|+..+++|+++|. ++-++.+++
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4588999999975 78888888778889999998 776666654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=81.68 E-value=1.6 Score=38.20 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=33.8
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHh--CCEEEEEeh-HhHHHHHHH
Q 023457 105 CQLNILELGSGT-GLVGMAAAAIL--GAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~--~~~V~~tD~-~~~l~~~~~ 145 (282)
+|.+||-+|+|. |+..+.+|+.. +++|+++|. ++-++.+++
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~ 214 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE 214 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence 588999999974 88888888888 899999998 776666654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.38 E-value=1.3 Score=39.04 Aligned_cols=42 Identities=21% Similarity=0.174 Sum_probs=34.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|+|. |+..+.+|+..+++|+++|. ++-++.+++
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 218 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS 218 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence 4588999999975 88888888888899999998 766666654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=81.37 E-value=4.2 Score=34.32 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+.+||++|==|++.|+ |..+|+. .+++|+++|. ++.++.+.+.+...+ .++.....|..+ ..+...
T Consensus 4 sL~gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g-------~~~~~~~~Dvt~--~~~v~~ 73 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG-------KEVLGVKADVSK--KKDVEE 73 (254)
T ss_dssp GGTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTS--HHHHHH
T ss_pred CCCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEccCCC--HHHHHH
Confidence 4579999999988776 4444333 3689999999 777777777766543 356666666665 322221
Q ss_pred -------cCCCccEEEEcCc
Q 023457 179 -------VGREFDVILASDV 191 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~ 191 (282)
.-++.|+++.+--
T Consensus 74 ~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 74 FVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCc
Confidence 1357899997643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=81.19 E-value=1.9 Score=38.16 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=34.4
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|+|. |+..+.+|+..+++|+++|. ++-++.+++
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH
Confidence 4688999999875 88888888888899999998 776666644
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.09 E-value=4.4 Score=35.25 Aligned_cols=96 Identities=21% Similarity=0.198 Sum_probs=56.6
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--- 177 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--- 177 (282)
.+|.+||=.|+|. |...+.+|+..++ .++++|. ++-++.+++ .+ .. ..++..+.+..+..
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lG-------a~---~~i~~~~~~~~~~~~~~ 224 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FG-------AM---QTFNSSEMSAPQMQSVL 224 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TT-------CS---EEEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cC-------Ce---EEEeCCCCCHHHHHHhh
Confidence 4688999999975 7777777777765 5689998 776666654 11 11 11233331111111
Q ss_pred hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 178 VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.....+|+|+-+- -....++...++++++ |+++++.
T Consensus 225 ~~~~g~d~v~d~~------G~~~~~~~~~~~l~~~------G~~v~~g 260 (346)
T 4a2c_A 225 RELRFNQLILETA------GVPQTVELAVEIAGPH------AQLALVG 260 (346)
T ss_dssp GGGCSSEEEEECS------CSHHHHHHHHHHCCTT------CEEEECC
T ss_pred cccCCcccccccc------cccchhhhhhheecCC------eEEEEEe
Confidence 1134678877531 2345666777888887 5655543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=80.88 E-value=5.4 Score=28.18 Aligned_cols=68 Identities=25% Similarity=0.305 Sum_probs=40.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHH---hC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 106 QLNILELGSGTGLVGMAAAAI---LG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~---~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
+++|+=+|+ |..|..++.. .+ .+|+++|. +.-++.+. .. .+.....+..+ ...+....
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~---------~~~~~~~d~~~--~~~~~~~~ 67 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RM---------GVATKQVDAKD--EAGLAKAL 67 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TT---------TCEEEECCTTC--HHHHHHHT
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hC---------CCcEEEecCCC--HHHHHHHH
Confidence 568999998 6666555533 35 68999999 66555443 11 23334444443 22333334
Q ss_pred CCccEEEEcC
Q 023457 181 REFDVILASD 190 (282)
Q Consensus 181 ~~fD~Ii~sd 190 (282)
..+|+||.+-
T Consensus 68 ~~~d~vi~~~ 77 (118)
T 3ic5_A 68 GGFDAVISAA 77 (118)
T ss_dssp TTCSEEEECS
T ss_pred cCCCEEEECC
Confidence 5789999764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=80.64 E-value=6 Score=38.24 Aligned_cols=34 Identities=21% Similarity=0.077 Sum_probs=25.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh----------C---CEEEEEeh-Hh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL----------G---AKVTVTDL-PH 138 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~----------~---~~V~~tD~-~~ 138 (282)
+..+|+|+|-|+|+..+.+.+.. . -+++.++. |-
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~ 105 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPL 105 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCC
Confidence 35699999999999998886542 1 25788886 53
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=80.53 E-value=2.6 Score=36.45 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=54.1
Q ss_pred cEEEeCC-C-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 108 NILELGS-G-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 108 ~VLELGc-G-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+||=+|| | .|...+.+|+..+++|++++. ++-++.+++. + .+. .++..+... ........+|
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----G------a~~----vi~~~~~~~-~~~~~~~~~d 213 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----G------ANR----ILSRDEFAE-SRPLEKQLWA 213 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----T------CSE----EEEGGGSSC-CCSSCCCCEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----C------CCE----EEecCCHHH-HHhhcCCCcc
Confidence 4999997 4 588999999888899999998 7766666541 1 111 112221110 0001134789
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+|+-+ + - ...+....++++++ |+++.+
T Consensus 214 ~v~d~--~----g-~~~~~~~~~~l~~~------G~iv~~ 240 (324)
T 3nx4_A 214 GAIDT--V----G-DKVLAKVLAQMNYG------GCVAAC 240 (324)
T ss_dssp EEEES--S----C-HHHHHHHHHTEEEE------EEEEEC
T ss_pred EEEEC--C----C-cHHHHHHHHHHhcC------CEEEEE
Confidence 88753 2 1 23677777888887 565554
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=80.28 E-value=1.6 Score=38.70 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=33.2
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|+|. |+..+.+|+..++ +|+++|. ++-++.+++
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 234 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 234 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 4588999999875 8888888877777 8999998 766666653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=80.13 E-value=26 Score=30.08 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=50.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...+++||=.|++.|+ |..+++.+ +.+|++++. ..-++.+...+...+. ..++.+..+|..+ ...+..
T Consensus 5 ~l~~k~vlVTGas~gI-G~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dl~~--~~~v~~ 76 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGV-GIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS-----GPEVMGVQLDVAS--REGFKM 76 (319)
T ss_dssp CCTTCEEEEETTTSTH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEECCTTC--HHHHHH
T ss_pred CCCCCEEEEcCCchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCeEEEEECCCCC--HHHHHH
Confidence 3468899999987665 44444333 689999999 7666666665554331 2256777777665 222211
Q ss_pred -------cCCCccEEEEcCcc
Q 023457 179 -------VGREFDVILASDVV 192 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~l 192 (282)
..+..|++|.+-.+
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~ 97 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGV 97 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCC
T ss_pred HHHHHHHhCCCCCEEEECCCc
Confidence 13578999976544
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=80.04 E-value=1.5 Score=38.85 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=33.5
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||-+|+|. |+..+.+|+..+++|+++|. ++-++.+++
T Consensus 178 ~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 178 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK 221 (360)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4588999999964 77888888778889999998 666666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 282 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 0.004 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.9 bits (82), Expect = 0.004
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 109 ILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDAN 150
+L++GSGTG++ M AA KV + + V AN
Sbjct: 37 VLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKAN 78
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.75 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.65 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.63 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.62 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.61 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.6 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.54 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.51 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.49 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.47 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.47 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.44 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.44 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.43 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.43 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.42 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.42 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.41 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.41 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.39 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.39 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.38 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.38 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.38 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.38 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.37 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.37 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.35 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.33 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.32 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.32 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.31 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.31 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.25 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.25 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.24 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.23 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.22 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.21 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.19 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.19 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.18 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.16 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.15 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.15 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.14 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.13 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.12 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.11 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.1 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.09 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.06 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.04 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.04 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.03 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.0 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.98 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.97 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.95 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.9 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.86 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.81 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.8 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.74 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.7 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.68 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.67 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.64 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.57 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.56 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.43 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.31 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.3 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.22 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.2 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.11 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.09 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.02 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.99 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.94 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.94 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.91 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.77 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.76 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.74 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.73 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.73 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.72 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.69 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.65 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.58 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.48 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.34 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.33 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.7 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.66 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.57 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.45 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.44 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.33 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.76 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.38 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.36 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.96 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.79 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.51 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.15 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.14 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.1 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.98 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.93 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.9 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.87 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.77 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 93.09 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.0 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.97 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 92.73 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.18 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.82 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.99 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.84 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.7 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.15 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.81 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.63 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 88.17 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.68 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 86.82 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.57 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 85.93 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 85.9 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 85.76 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 84.86 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.52 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.16 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 83.73 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.12 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 83.12 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.76 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 82.57 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.11 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 81.61 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 81.09 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 80.95 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 80.63 |
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=2.1e-17 Score=135.87 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=124.4
Q ss_pred ccCCCCCCCccceeeecCCCCceEEEEEeCCCCc--cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCC
Q 023457 37 TQDTLTSSSSETEQHYMPSIESTLVIRQLPSQGL--SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGS 114 (282)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~--g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGc 114 (282)
+..|.++.+.......+.+ ..+.+. +..|+ ...++.++.+|.+.+. ..++++||||||
T Consensus 2 ~~~p~~~~~~~~~~~~~~g--~~~~~~--t~~gvF~~~~~d~~t~lLi~~l~----------------~~~~~~VLDiGc 61 (194)
T d1dusa_ 2 SEKPTTKSDVKIVEDILRG--KKLKFK--TDSGVFSYGKVDKGTKILVENVV----------------VDKDDDILDLGC 61 (194)
T ss_dssp CCCCCSCCCEEEEEEEETT--EEEEEE--EETTSTTTTSCCHHHHHHHHHCC----------------CCTTCEEEEETC
T ss_pred CCCCCCccceEEEEEEECC--eeEEEE--cCCCccCCCCcCHHHHHHHHhCC----------------cCCCCeEEEEee
Confidence 3345555666666666654 223333 33333 3467788888887762 235889999999
Q ss_pred CCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccC
Q 023457 115 GTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVY 193 (282)
Q Consensus 115 GtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly 193 (282)
|+|..++.++ ..+.+|+++|+ +.+++.+++|+..|+.. ..++.+...|+.+ .+ .+..||+|+++.++|
T Consensus 62 G~G~~~~~la-~~~~~v~~iD~s~~~i~~a~~n~~~~~l~----~~~i~~~~~d~~~----~~--~~~~fD~Ii~~~p~~ 130 (194)
T d1dusa_ 62 GYGVIGIALA-DEVKSTTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLYE----NV--KDRKYNKIITNPPIR 130 (194)
T ss_dssp TTSHHHHHHG-GGSSEEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTTT----TC--TTSCEEEEEECCCST
T ss_pred cCChhHHHHH-hhccccceeeeccccchhHHHHHHHhCCc----cceEEEEEcchhh----hh--ccCCceEEEEcccEE
Confidence 9999999997 45689999999 99999999999998752 3456665544433 11 246899999998887
Q ss_pred CCCC-HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhc-CceEEEcccCCCCCcccceEEEEEee
Q 023457 194 HDHL-FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKL-FDVETIHADLPCNGARVGVVVYRMTG 270 (282)
Q Consensus 194 ~~~~-~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~-f~ve~v~~~~~~~~~~~~~~v~~~~~ 270 (282)
.... .+.+++.+.++|+|| |.++++.... .....+...+++. ..++.+.. ..+++|++.+|
T Consensus 131 ~~~~~~~~~l~~~~~~Lkpg------G~l~i~~~~~---~~~~~~~~~l~~~f~~~~~~~~-------~~gf~vl~a~K 193 (194)
T d1dusa_ 131 AGKEVLHRIIEEGKELLKDN------GEIWVVIQTK---QGAKSLAKYMKDVFGNVETVTI-------KGGYRVLKSKK 193 (194)
T ss_dssp TCHHHHHHHHHHHHHHEEEE------EEEEEEEEST---HHHHHHHHHHHHHHSCCEEEEE-------ETTEEEEEEEC
T ss_pred ecchhhhhHHHHHHHhcCcC------cEEEEEEeCc---CCHHHHHHHHHHhCCcEEEEEe-------cCCcEEEEEEE
Confidence 6554 578999999999998 5655544322 2234444444443 36676663 34556555443
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.65 E-value=9.6e-16 Score=128.36 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++. .+++|+++|+ +.+++.+++++..++ ..++.+.+.++.+ ++...++
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~i~~A~~~~~~~~------~~~i~~~~~d~~~-----l~~~~~~ 81 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAP-FVKKVVAFDLTEDILKVARAFIEGNG------HQQVEYVQGDAEQ-----MPFTDER 81 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTT------CCSEEEEECCC-C-----CCSCTTC
T ss_pred CCcCEEEEecccCcHHHHHHHH-hCCEEEEEECCHHHHhhhhhcccccc------ccccccccccccc-----ccccccc
Confidence 3478999999999999999984 4689999999 999999999998766 3467777766554 3333678
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++..++++..+...+++.+.++|+|| |.+++..
T Consensus 82 fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg------G~l~i~~ 118 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPASFVSEAYRVLKKG------GQLLLVD 118 (231)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred cccccccccccccCCHHHHHHHHHHhcCCC------cEEEEEe
Confidence 999999999999999999999999999998 5655543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=2e-15 Score=127.12 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=81.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|.+|||||||+|..+..++. .+++|+++|+ +.|++.+++++..++. .++.+...|.. +++..+++
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~-~~~~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d~~-----~~~~~~~~ 82 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAE-----SLPFPDDS 82 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTT-----BCCSCTTC
T ss_pred CCCCEEEEeCCcCcHHHHHHHH-hCCeEEEEeCChhhhhhhhhhhccccc------ccccccccccc-----cccccccc
Confidence 4588999999999999999985 4589999999 9999999999987763 35666654443 33334678
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++..+...+++.+.++|+||
T Consensus 83 fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg 112 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDVRKAVREVARVLKQD 112 (234)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred cceeeeeceeecccCHHHHHHHHHHeeCCC
Confidence 999999999999999999999999999998
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=2e-15 Score=128.94 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=106.3
Q ss_pred eEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H
Q 023457 59 TLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-P 137 (282)
Q Consensus 59 ~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~ 137 (282)
.+.|.-.++..+|+...+.+..+.++|.... .+|++|||+|||+|.+++.++ +.+++|+++|+ +
T Consensus 88 ~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~--------------~~g~~VLDiGcGsG~l~i~aa-~~g~~V~gvDis~ 152 (254)
T d2nxca1 88 EIPLVIEPGMAFGTGHHETTRLALKALARHL--------------RPGDKVLDLGTGSGVLAIAAE-KLGGKALGVDIDP 152 (254)
T ss_dssp SEEEECCCC-----CCSHHHHHHHHHHHHHC--------------CTTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCG
T ss_pred ceEEEEccccccCccccchhhHHHHHHHhhc--------------CccCEEEEcccchhHHHHHHH-hcCCEEEEEECCh
Confidence 3556667877788889999999999997754 348899999999999999887 56789999999 9
Q ss_pred hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCC
Q 023457 138 HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPK 217 (282)
Q Consensus 138 ~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~ 217 (282)
.+++.+++|++.|+.. +.+...++.. .....+||+|+++-.. ..+..++..+.++|+||
T Consensus 153 ~av~~A~~na~~n~~~-------~~~~~~d~~~------~~~~~~fD~V~ani~~---~~l~~l~~~~~~~LkpG----- 211 (254)
T d2nxca1 153 MVLPQAEANAKRNGVR-------PRFLEGSLEA------ALPFGPFDLLVANLYA---ELHAALAPRYREALVPG----- 211 (254)
T ss_dssp GGHHHHHHHHHHTTCC-------CEEEESCHHH------HGGGCCEEEEEEECCH---HHHHHHHHHHHHHEEEE-----
T ss_pred HHHHHHHHHHHHcCCc-------eeEEeccccc------cccccccchhhhcccc---ccHHHHHHHHHHhcCCC-----
Confidence 9999999999998852 2333322211 1224689999987332 34678889999999998
Q ss_pred CceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 218 KKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 218 ~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
|. ++++..... ....+.+.++ .||.+....
T Consensus 212 -G~-lilSgil~~--~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 212 -GR-ALLTGILKD--RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp -EE-EEEEEEEGG--GHHHHHHHHHHTTCEEEEEE
T ss_pred -cE-EEEEecchh--hHHHHHHHHHHCCCEEEEEE
Confidence 44 444433222 2345555554 478775544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.9e-15 Score=128.17 Aligned_cols=107 Identities=20% Similarity=0.080 Sum_probs=90.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+|.+|||||||+|..+..+++..+.+|+++|+ +.+++.++++...+++ .+++.+...|+.+. ..+.
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl-----~~~v~~~~~d~~~~------~~~~ 99 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGY------VANE 99 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTC------CCSS
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc-----cccchhhhhHHhhc------cccC
Confidence 3568999999999999999998777889999999 9999999999988874 56788887666551 1257
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
+||+|++..++++..+...+++.+.++|+|| |.+++...
T Consensus 100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG------G~l~i~~~ 138 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGFAGAEELLAQSLKPG------GIMLIGEP 138 (245)
T ss_dssp CEEEEEEESCGGGTSSSHHHHHHHTTSEEEE------EEEEEEEE
T ss_pred ceeEEEEEehhhccCCHHHHHHHHHHHcCcC------cEEEEEec
Confidence 8999999999999999999999999999998 66655443
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.60 E-value=7.7e-15 Score=127.00 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=90.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.+++..+.+|+++|+ +.+++.++++....++ .+++.+...++.+ ++...++
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----~~~v~~~~~d~~~-----l~~~~~s 135 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLE-----IPCEDNS 135 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTS-----CSSCTTC
T ss_pred CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----ccccccccccccc-----ccccccc
Confidence 468899999999999999999777889999999 9999999999887764 4578888766655 3334578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++..+++|.++...+++.+.++|+|| |.+++..
T Consensus 136 fD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg------G~l~~~~ 172 (282)
T d2o57a1 136 YDFIWSQDAFLHSPDKLKVFQECARVLKPR------GVMAITD 172 (282)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred cchhhccchhhhccCHHHHHHHHHHhcCCC------cEEEEEE
Confidence 999999999999999999999999999998 5655543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.4e-14 Score=118.61 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=94.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..+.+|||||||+|..+..++...+.+|+++|+ +.|++.+++++..++. .++.+.+.++.+ +.....+
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~------~~~~f~~~d~~~-----~~~~~~~ 127 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQD-----FTPEPDS 127 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGG-----CCCCSSC
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc------cccccccccccc-----ccccccc
Confidence 456799999999999998876566789999999 9999999998876552 245555544433 3333578
Q ss_pred ccEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc-----------ccHHHHHHHHhh-cCceE
Q 023457 183 FDVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW-----------KKDSVFFKKAKK-LFDVE 248 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~-----------~~~~~f~~~~~~-~f~ve 248 (282)
||+|++..++++... ...+++.+.++|+|+ |.+++........ .....+.+.+++ ||++.
T Consensus 128 fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~------G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN------GIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE------EEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred ccccccccccccchhhhhhhHHHHHHHhcCCc------ceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEE
Confidence 999999999998764 457999999999998 5554433211110 124566666654 89876
Q ss_pred EEcc
Q 023457 249 TIHA 252 (282)
Q Consensus 249 ~v~~ 252 (282)
....
T Consensus 202 ~~~~ 205 (222)
T d2ex4a1 202 AEER 205 (222)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=4.3e-14 Score=117.26 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=78.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.+++ .+.+|+++|+ +.|++.++++....+. .+.....| ..+++...+.|
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~-------~~~~~~~d-----~~~l~~~~~~f 103 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRES-------NVEFIVGD-----ARKLSFEDKTF 103 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC-------CCEEEECC-----TTSCCSCTTCE
T ss_pred CCCEEEEECCCcchhhhhHhh-hhcccccccccccchhhhhhhhccccc-------cccccccc-----cccccccCcCc
Confidence 356999999999999999984 5689999999 9999999988776442 23333322 22344446789
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|++..++++.+ +...+++.+.++|+|| |.+++..
T Consensus 104 D~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg------G~lii~~ 141 (226)
T d1ve3a1 104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPS------GKFIMYF 141 (226)
T ss_dssp EEEEEESCGGGCCHHHHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred eEEEEecchhhCChhHHHHHHHHHHHHcCcC------cEEEEEE
Confidence 9999999999864 6778999999999998 6655543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.49 E-value=3.2e-13 Score=115.10 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=96.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||+|||+|.++..++......|+++|. +.+++.++++... ...+.+...+.. ++.....+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------~~~~~~~~~d~~-----~~~~~~~~ 158 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASME-----TATLPPNT 158 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGG-----GCCCCSSC
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------cccceeEEcccc-----ccccCCCc
Confidence 457799999999999999887677789999999 9999999876543 223444443332 33333578
Q ss_pred ccEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc-------------ccHHHHHHHHh-hcCc
Q 023457 183 FDVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW-------------KKDSVFFKKAK-KLFD 246 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~-------------~~~~~f~~~~~-~~f~ 246 (282)
||+|++..+++|..+ ...+++.+.++|+|+ |.+++ ....... .....+.+.++ .||+
T Consensus 159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg------G~iii-~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ 231 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPN------GYIFF-KENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVR 231 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE------EEEEE-EEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCC
T ss_pred cceEEeeccccccchhhhHHHHHHHHHhcCCC------cEEEE-EecCCCCCcceecccCCceeCCHHHHHHHHHHcCCE
Confidence 999999999998765 458899999999998 55444 3211110 02455666665 4898
Q ss_pred eEEEcccCCCCCcccceEEEEE
Q 023457 247 VETIHADLPCNGARVGVVVYRM 268 (282)
Q Consensus 247 ve~v~~~~~~~~~~~~~~v~~~ 268 (282)
+............--.|.+|.+
T Consensus 232 ii~~~~q~~fP~~l~~V~~~~l 253 (254)
T d1xtpa_ 232 VVKEAFQEEWPTDLFPLKMYAL 253 (254)
T ss_dssp EEEEEECTTCCTTSCCEEEEEE
T ss_pred EEEEEeeCCCCccceEEEEEEE
Confidence 8554433222222234666655
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.47 E-value=1.8e-13 Score=111.19 Aligned_cols=125 Identities=16% Similarity=0.178 Sum_probs=90.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.+|. .+++|+++|. +.+++.+++|++.+++ ..++.+...+.. +.......
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~-~~~~V~avD~~~~~l~~a~~n~~~~gl-----~~~v~~~~gda~-----~~~~~~~~ 100 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAP-----EALCKIPD 100 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHH-----HHHTTSCC
T ss_pred CCCCEEEEEECCeEcccccccc-cceEEEEecCCHHHHHHHHHHHHHcCC-----CcceEEEECchh-----hcccccCC
Confidence 4688999999999999999984 4689999999 9999999999999885 457777664332 23333578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
||+|++.... .....+++.+.+.|+|+ |.+++... ..+....+.+.+. .+|.++.+.
T Consensus 101 ~D~v~~~~~~---~~~~~~~~~~~~~Lkpg------G~lvi~~~---~~e~~~~~~~~l~~~~~~~~~~~ 158 (186)
T d1l3ia_ 101 IDIAVVGGSG---GELQEILRIIKDKLKPG------GRIIVTAI---LLETKFEAMECLRDLGFDVNITE 158 (186)
T ss_dssp EEEEEESCCT---TCHHHHHHHHHHTEEEE------EEEEEEEC---BHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCEEEEeCcc---ccchHHHHHHHHHhCcC------CEEEEEee---ccccHHHHHHHHHHcCCCeEEEE
Confidence 9999998665 45678999999999998 55544332 2223344444444 366665443
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=9e-13 Score=109.07 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=100.6
Q ss_pred cceeehhHH-HHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHH
Q 023457 71 SFKLWPAAT-TLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 71 g~~~W~~a~-~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~ 147 (282)
+++.|+.-. -|+..+..... . ...+|.+|||||||+|..+..+|...+ ++|+++|+ +.+++.+++++
T Consensus 31 ~~r~w~p~rsklaa~i~~g~~-l---------~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a 100 (209)
T d1nt2a_ 31 GYREWVPWRSKLAAMILKGHR-L---------KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100 (209)
T ss_dssp TEEECCGGGCHHHHHHHTSCC-C---------CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHH
T ss_pred ceeeeCCcchHHHHHHhcccc-C---------CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHh
Confidence 457887332 44444433221 2 346799999999999999999986654 68999999 99999999887
Q ss_pred HhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 148 DANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 148 ~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
...+ ++.....+... +.........+|+|+. + +++......+++.+.++|+|| |.+++ +..
T Consensus 101 ~~~~--------ni~~i~~d~~~--~~~~~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~Lkpg------G~l~i-~~~ 161 (209)
T d1nt2a_ 101 RERN--------NIIPLLFDASK--PWKYSGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLKEK------GEVVI-MVK 161 (209)
T ss_dssp HHCS--------SEEEECSCTTC--GGGTTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEE------EEEEE-EEE
T ss_pred hccC--------CceEEEeeccC--ccccccccceEEEEEe-c-ccChhhHHHHHHHHHHHhccC------CeEEE-EEE
Confidence 7633 34444322222 1111111234555544 3 556667889999999999998 55444 332
Q ss_pred ecCc----cc---HHHHHHHHhhcCceEEEcccCCCCCcccceEEEE
Q 023457 228 LRRW----KK---DSVFFKKAKKLFDVETIHADLPCNGARVGVVVYR 267 (282)
Q Consensus 228 ~~~~----~~---~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~ 267 (282)
.+.. +. .......++.+|++.+...-.|.+....-+-.||
T Consensus 162 ~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i~L~P~~~~H~~v~~~r 208 (209)
T d1nt2a_ 162 ARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIFIHAYR 208 (209)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTCTTEEEEEEEE
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCEEEEEEccCCCccCcEEEEEEe
Confidence 2211 11 2222334456898866543345443333344444
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=7.3e-13 Score=110.95 Aligned_cols=172 Identities=12% Similarity=0.004 Sum_probs=108.4
Q ss_pred hHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc
Q 023457 77 AATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS 155 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~ 155 (282)
....|.+++..... ..++.+|||+|||+|..++.+| ..|.+|+++|+ +.+++.++++.........
T Consensus 29 ~~~~l~~~~~~~l~------------~~~~~rvLd~GCG~G~~a~~LA-~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~ 95 (229)
T d2bzga1 29 GHQLLKKHLDTFLK------------GKSGLRVFFPLCGKAVEMKWFA-DRGHSVVGVEISELGIQEFFTEQNLSYSEEP 95 (229)
T ss_dssp CCHHHHHHHHHHHT------------TCCSCEEEETTCTTCTHHHHHH-HTTCEEEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHhcC------------CCCCCEEEEeCCCCcHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHhhccccccc
Confidence 44667777755432 2357899999999999999998 45789999999 9999988876554321100
Q ss_pred -----------cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEE
Q 023457 156 -----------LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMN 222 (282)
Q Consensus 156 -----------~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~ 222 (282)
....++.+...|+.. ........||+|+...++++. +..+..++.+.++|+|| |.++
T Consensus 96 ~~~~~~~~~~~~~~~~v~~~~~d~~~----l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg------G~~~ 165 (229)
T d2bzga1 96 ITEIPGTKVFKSSSGNISLYCCSIFD----LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK------FQYL 165 (229)
T ss_dssp CTTSTTCEEEEETTSSEEEEESCGGG----GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE------EEEE
T ss_pred hhcccccceeeecCCcEEEEEcchhh----ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc------ceEE
Confidence 012344444433322 111225689999999888764 57789999999999998 5655
Q ss_pred EEEEeecC-------c-ccHHHHHHHHhhcCceEEEcccC--CCCCcccc-----eEEEEEeee
Q 023457 223 FVMAHLRR-------W-KKDSVFFKKAKKLFDVETIHADL--PCNGARVG-----VVVYRMTGK 271 (282)
Q Consensus 223 il~~~~~~-------~-~~~~~f~~~~~~~f~ve~v~~~~--~~~~~~~~-----~~v~~~~~~ 271 (282)
++...... + -......+.+..+|.++.+.... .......| -.+|++.||
T Consensus 166 l~~~~~~~~~~~gpp~~~~~~el~~lf~~~~~i~~le~~~~~~~~~~~~gl~~l~e~~y~l~~k 229 (229)
T d2bzga1 166 LCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIRCLEKVDAFEERHKSWGIDCLFEKLYLLTEK 229 (229)
T ss_dssp EEEEECCTTTCCCSSCCCCHHHHHHHHTTTEEEEEEEEEECCCGGGGGGTCSCCEEEEEEEEEC
T ss_pred EEEcccCCCCCCCCCCCCCHHHHHHHhcCCCEEEEEEEecccCcchhhcCcchHhheeEEEeeC
Confidence 55433211 1 12344555566778887665321 11111112 258888875
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=2.4e-12 Score=111.27 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=87.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+|.+|||||||+|.+++.+|+..+++|+++++ +.-++.+++.+...+. .+++.+...|+.+ .+.
T Consensus 60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-----~~~v~~~~~d~~~--------~~~ 126 (285)
T d1kpga_ 60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWEQ--------FDE 126 (285)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGGG--------CCC
T ss_pred CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-----hhhhHHHHhhhhc--------ccc
Confidence 4579999999999999999999888999999999 8899999998887764 5677777666543 246
Q ss_pred CccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||.|++..++.|. .....+++.+.++|+|| |++++-.
T Consensus 127 ~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg------G~~~l~~ 166 (285)
T d1kpga_ 127 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD------GVMLLHT 166 (285)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT------CEEEEEE
T ss_pred cccceeeehhhhhcCchhHHHHHHHHHhhcCCC------CcEEEEE
Confidence 89999999999886 46789999999999999 6766533
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.43 E-value=2e-13 Score=114.10 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||+|..+..++ ..+.+|+++|+ +++++.++++.. ..+.+...++.+ +. .+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~-~~g~~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~~-----~~-~~~~ 81 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQ-EHFNDITCVEASEEAISHAQGRLK----------DGITYIHSRFED-----AQ-LPRR 81 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHT-TTCSCEEEEESCHHHHHHHHHHSC----------SCEEEEESCGGG-----CC-CSSC
T ss_pred CCCCcEEEEeCCCcHHHHHHH-HcCCeEEEEeCcHHHhhhhhcccc----------cccccccccccc-----cc-cccc
Confidence 457799999999999999987 44679999999 999999987532 235555433332 22 2578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHH-HHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLR-LFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~-~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++.++++|..+...++..+. ++|+|| |.+++.+
T Consensus 82 fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~g------G~l~i~~ 119 (225)
T d2p7ia1 82 YDNIVLTHVLEHIDDPVALLKRINDDWLAEG------GRLFLVC 119 (225)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTTEEEE------EEEEEEE
T ss_pred cccccccceeEecCCHHHHHHHHHHHhcCCC------ceEEEEe
Confidence 999999999999999999999997 789998 5555544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=1.5e-13 Score=115.29 Aligned_cols=90 Identities=24% Similarity=0.278 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||+|||+|..+..++. .+.+|+++|+ +.|++.++++...+ ... ++ ..+++...++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~------------~~~---~~--~~~l~~~~~~f 103 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQE-RGFEVVLVDPSKEMLEVAREKGVKN------------VVE---AK--AEDLPFPSGAF 103 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHT-TTCEEEEEESCHHHHHHHHHHTCSC------------EEE---CC--TTSCCSCTTCE
T ss_pred CCCEEEEECCCCchhcccccc-cceEEEEeecccccccccccccccc------------ccc---cc--ccccccccccc
Confidence 467999999999999999984 5689999999 99999998753211 111 11 33444446789
Q ss_pred cEEEEc-CccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILAS-DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~s-d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++. +++++.++...+++.+.++|+||
T Consensus 104 D~ii~~~~~~~~~~d~~~~l~~i~r~Lk~g 133 (246)
T d2avna1 104 EAVLALGDVLSYVENKDKAFSEIRRVLVPD 133 (246)
T ss_dssp EEEEECSSHHHHCSCHHHHHHHHHHHEEEE
T ss_pred cceeeecchhhhhhhHHHHHHHHHhhcCcC
Confidence 999984 78888899999999999999998
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.42 E-value=5.1e-13 Score=109.31 Aligned_cols=95 Identities=23% Similarity=0.282 Sum_probs=76.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.+++ .+.+|+++|+ +.+++.++++....+. ..+.+...|+... . .++.|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~~-----~-~~~~f 96 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNTL-----T-FDGEY 96 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTTC-----C-CCCCE
T ss_pred CCCcEEEECCCCCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccc------cchhhhheecccc-----c-ccccc
Confidence 355999999999999999985 5689999999 9999999998887653 3456655554431 1 25789
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
|+|++..++++.. ....+++.+.++|+|+
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg 127 (198)
T d2i6ga1 97 DFILSTVVMMFLEAQTIPGLIANMQRCTKPG 127 (198)
T ss_dssp EEEEEESCGGGSCTTHHHHHHHHHHHTEEEE
T ss_pred cEEEEeeeeecCCHHHHHHHHHHHHHHcCCC
Confidence 9999999998753 4678999999999998
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=1.1e-12 Score=113.34 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+|.+|||||||+|.+++.+++..+++|+++|+ +..++.+++++...++ ...+.+...|+.+ ...
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l-----~~~~~~~~~d~~~--------~~~ 116 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWED--------FAE 116 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGG--------CCC
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc-----ccchhhhhhhhhh--------hcc
Confidence 3568999999999999999998888899999999 9999999999887764 3445554433222 357
Q ss_pred CccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||.|++..+++|. ..++.+++.+.++|+|| |.+++-.
T Consensus 117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg------G~~~i~~ 156 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD------GRMTVQS 156 (280)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT------CEEEEEE
T ss_pred chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC------ceEEEEE
Confidence 89999999999986 45689999999999999 6766533
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.41 E-value=4.4e-12 Score=106.37 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=87.6
Q ss_pred CccceeehhHH-HHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHH
Q 023457 69 GLSFKLWPAAT-TLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 69 g~g~~~W~~a~-~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~ 145 (282)
+..++.|+.-. -|+.-|....... ...+|.+|||||||+|..+..+|...+ +.|+++|+ +.|++.++.
T Consensus 46 ~~e~r~w~p~rsklaA~i~~gl~~l---------~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~ 116 (230)
T d1g8sa_ 46 DEEYRIWNPNKSKLAAAIIKGLKVM---------PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD 116 (230)
T ss_dssp TEEEEECCTTTCHHHHHHHTTCCCC---------CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred CceeeeECCCccHHHHHHHhhHHhC---------CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence 34568898443 5555554443322 456799999999999999999987653 69999999 999999988
Q ss_pred HHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 146 NVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 146 n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
++..+. ++.....+... +. ......+|++++...+++..+.+.++..+.++|+||
T Consensus 117 ~a~~~~--------ni~~i~~d~~~--~~--~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg 171 (230)
T d1g8sa_ 117 ACAERE--------NIIPILGDANK--PQ--EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKG 171 (230)
T ss_dssp HTTTCT--------TEEEEECCTTC--GG--GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE
T ss_pred HHhhhc--------ccceEEEeecc--Cc--ccccccceeEEeeccccchHHHHHHHHHHHHhcccC
Confidence 765432 34443333332 21 222456788777777888888999999999999998
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.41 E-value=6.5e-13 Score=107.50 Aligned_cols=139 Identities=6% Similarity=-0.019 Sum_probs=90.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc------cCCCcEEEEEEEeCCCCccch
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS------LRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~------~~~~~v~~~~ld~~~~~~~~~ 176 (282)
.+|.+|||+|||+|..++.+|. .|.+|+++|+ +.|++.++++......... .....+.+...++....
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~-~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~---- 93 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT---- 93 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHH-HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST----
T ss_pred CCCCEEEEecCcCCHHHHHHHH-cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc----
Confidence 4588999999999999999985 4799999999 9999999988754332110 00122334443443311
Q ss_pred hhcCCCccEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-------cc-cHHHHHHHHhhcCc
Q 023457 177 AVVGREFDVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-------WK-KDSVFFKKAKKLFD 246 (282)
Q Consensus 177 ~~~~~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-------~~-~~~~f~~~~~~~f~ 246 (282)
......||+|+++.++++.. ....+++.+.++|+|| |.+++....... +. ....+.+.+..+|+
T Consensus 94 ~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg------G~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~ 167 (201)
T d1pjza_ 94 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA------CSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWE 167 (201)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE------EEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEE
T ss_pred cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC------cEEEEEEcccccccCCCccccCCHHHHHHHhCCCcE
Confidence 11235799999998888654 4678999999999998 565554432111 11 12333444456788
Q ss_pred eEEEccc
Q 023457 247 VETIHAD 253 (282)
Q Consensus 247 ve~v~~~ 253 (282)
++.+...
T Consensus 168 i~~~~~~ 174 (201)
T d1pjza_ 168 VTKVGGQ 174 (201)
T ss_dssp EEEEEES
T ss_pred EEEEEEe
Confidence 8766544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=7.1e-13 Score=111.87 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=73.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||||..++.+++ .+.+|+++|+ +.|++.+++++..++. ++.+.+.++.+ ++. ..+
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~-------~i~~~~~d~~~-----l~~-~~~ 105 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNL-------KIEFLQGDVLE-----IAF-KNE 105 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC-------CCEEEESCGGG-----CCC-CSC
T ss_pred CCCCEEEEeCCCCCccchhhcc-cceEEEEEeeccccccccccccccccc-------cchheehhhhh-----ccc-ccc
Confidence 3467999999999999999985 5689999999 9999999999887543 45555544433 332 458
Q ss_pred ccEEEEc-CccCCC--CCHHHHHHHHHHHHhcC
Q 023457 183 FDVILAS-DVVYHD--HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~s-d~ly~~--~~~~~ll~~l~~ll~~g 212 (282)
||+|++. .++++. ++...+++.+.++|+||
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg 138 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG 138 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC
Confidence 9999986 455543 45668999999999998
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=2.4e-12 Score=111.62 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=83.5
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+|.+|||||||+|.+++.+|...+++|+++++ +..++.+++.+...++ ..++.+...|+. ..++
T Consensus 59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l-----~~~v~~~~~d~~--------~~~~ 125 (291)
T d1kpia_ 59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGWE--------EFDE 125 (291)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC-----SSCEEEEECCGG--------GCCC
T ss_pred CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc-----chhhhhhhhccc--------cccc
Confidence 3569999999999999999999888999999999 8889999998887764 445665544332 2357
Q ss_pred CccEEEEcCccCCCCC---------HHHHHHHHHHHHhcCCCCCCCceEEE
Q 023457 182 EFDVILASDVVYHDHL---------FDPLLVTLRLFLNSGEPEPKKKKMNF 223 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~---------~~~ll~~l~~ll~~g~~~~~~g~~~i 223 (282)
+||.|++..++.|... ++.+++.+.++|+|| |++++
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg------G~~~l 170 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD------GRMLL 170 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT------CEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC------CceEE
Confidence 8999999999987643 789999999999999 66665
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.38 E-value=2.7e-13 Score=106.66 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+|++|||+|||||.+|+.++.+++++|+++|. +.+++.+++|++.++. .+++.+.+.|+.. .+.....
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----~~~~~ii~~D~~~----~l~~~~~ 82 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAER----AIDCLTG 82 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHH----HHHHBCS
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----ccchhhhcccccc----ccccccc
Confidence 3569999999999999999998777789999999 9999999999998874 4567776655433 2334467
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHH--HHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRL--FLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~--ll~~g 212 (282)
+||+|++ |+-|........+..+.. +|+++
T Consensus 83 ~fDiIf~-DPPy~~~~~~~~l~~i~~~~~L~~~ 114 (152)
T d2esra1 83 RFDLVFL-DPPYAKETIVATIEALAAKNLLSEQ 114 (152)
T ss_dssp CEEEEEE-CCSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccceeEe-chhhccchHHHHHHHHHHCCCcCCC
Confidence 8999999 666766667777777754 46666
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.38 E-value=8.3e-13 Score=114.09 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=78.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..++.++... +.+|+++|+ +.+++.+++++..++. ++.+...|... ++. .
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-------~~~f~~~d~~~-----~~~-~ 92 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-------DSEFLEGDATE-----IEL-N 92 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-------EEEEEESCTTT-----CCC-S
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-------ccccccccccc-----ccc-c
Confidence 457799999999999999998554 368999999 9999999999886542 45555544333 222 4
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|+++.++++.++...+++.+.++|+||
T Consensus 93 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 124 (281)
T d2gh1a1 93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKG 124 (281)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE
T ss_pred CCceEEEEehhhhcCCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999999999999998
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.38 E-value=6.2e-13 Score=112.91 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=76.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++++|||||||+|.....++....++|+|+|+ +.+++.++++...++. ..++.+...|.... ......+|
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----~~~v~f~~~D~~~~----~~~~~~~f 94 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGR----HMDLGKEF 94 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTS----CCCCSSCE
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----CcceEEEEcchhhh----cccccccc
Confidence 47899999999999888887665679999999 9999999988776542 33566666554321 11124689
Q ss_pred cEEEEcCccCCC----CCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHD----HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~----~~~~~ll~~l~~ll~~g 212 (282)
|+|++..++++. .....+++.+.++|+||
T Consensus 95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g 127 (252)
T d1ri5a_ 95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127 (252)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eEEEEcceeeecCCCHHHHHHHHHHHhceeCCC
Confidence 999999998764 34668999999999998
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.38 E-value=2e-12 Score=107.78 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=74.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
++.+|||||||||..++.+++.. +.+|+++|+ +.|++.+++++..... ..++.+..-+. .++ ..
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----~~~~~~~~~d~-----~~~--~~ 106 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDI-----RHV--EI 106 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----SSCEEEECSCT-----TTC--CC
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----cchhhhccchh-----hcc--cc
Confidence 47799999999999999998643 479999999 9999999999886553 23344333221 112 24
Q ss_pred CCccEEEEcCccCCC--CCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHD--HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g 212 (282)
..+|+|+++.++++. ++...+++.+.+.|+||
T Consensus 107 ~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg 140 (225)
T d1im8a_ 107 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN 140 (225)
T ss_dssp CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE
T ss_pred ccceeeEEeeeccccChhhHHHHHHHHHHhCCCC
Confidence 678999999998875 57889999999999998
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.37 E-value=1.8e-12 Score=105.96 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=55.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+..|++|||+|||+|.+++.++..++.+|+++|+ +.+++.+++|+.. +.+..-|+ .....
T Consensus 46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~-----------~~~~~~D~--------~~l~~ 106 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG-----------VNFMVADV--------SEISG 106 (197)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT-----------SEEEECCG--------GGCCC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc-----------ccEEEEeh--------hhcCC
Confidence 4579999999999999999988666678999999 9999999988642 33333332 22357
Q ss_pred CccEEEEcCcc
Q 023457 182 EFDVILASDVV 192 (282)
Q Consensus 182 ~fD~Ii~sd~l 192 (282)
+||+||++.++
T Consensus 107 ~fD~Vi~NPPf 117 (197)
T d1ne2a_ 107 KYDTWIMNPPF 117 (197)
T ss_dssp CEEEEEECCCC
T ss_pred cceEEEeCccc
Confidence 89999998775
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.37 E-value=4.5e-12 Score=107.68 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=81.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
...++|||||||+|..++.++++.+ .+++++|++.+++.+++++...+. ..++.+...|+.+ . ...+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----~~rv~~~~~D~~~----~---~~~~ 146 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----SDRVDVVEGDFFE----P---LPRK 146 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----TTTEEEEECCTTS----C---CSSC
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhc-----ccchhhccccchh----h---cccc
Confidence 3457999999999999999997764 689999998899999999987764 5678887765533 1 1357
Q ss_pred ccEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 183 FDVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
||+|+++.++++..+ ...+++.+.+.|+|| |.+++.
T Consensus 147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG------G~l~i~ 184 (253)
T d1tw3a2 147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPG------GRILIH 184 (253)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE------EEEEEE
T ss_pred hhheeeccccccCCchhhHHHHHHHHHhcCCC------cEEEEE
Confidence 999999999987654 357899999999998 565553
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=6.1e-13 Score=112.67 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=89.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccC----------C-----------Cc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLR----------G-----------GS 160 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~----------~-----------~~ 160 (282)
..++++|||||||+|..++.++...+.+|+++|+ +.+++.+++++..+....... . .+
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 3568899999999999988777555568999999 999999999987654321000 0 00
Q ss_pred EEEEEEEeCCC--CccchhhcCCCccEEEEcCccCCC----CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec-----
Q 023457 161 VHVAPLRWGEA--EANDVAVVGREFDVILASDVVYHD----HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR----- 229 (282)
Q Consensus 161 v~~~~ld~~~~--~~~~~~~~~~~fD~Ii~sd~ly~~----~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~----- 229 (282)
..+........ .....+...+.||+|++..++++. +.+..+++.+.++|+|| |.+++......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpG------G~li~~~~~~~~~~~~ 202 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG------GHLVTTVTLRLPSYMV 202 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE------EEEEEEEESSCCEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCC------cEEEEEEeccccccee
Confidence 01111111110 011112235689999999998765 35678999999999998 55444332111
Q ss_pred -------CcccHHHHHHHHh-hcCceEEEc
Q 023457 230 -------RWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 230 -------~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
.+-....+.+.++ .||++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 203 GKREFSCVALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccccCCCHHHHHHHHHHCCCEEEEEE
Confidence 1113455656565 499876653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.33 E-value=1.3e-12 Score=110.37 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=72.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||+|..++.+++ .+.+|+++|+ +.|++.+++++..++. ++.+...|+.+ +. ...+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~-------~v~~~~~d~~~-----~~-~~~~ 101 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGL-------KPRLACQDISN-----LN-INRK 101 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTC-------CCEEECCCGGG-----CC-CSCC
T ss_pred CCCCeEEEEeCcCCHHHHHHHH-hCCccEeeccchhhhhhccccccccCc-------cceeeccchhh-----hc-cccc
Confidence 3467999999999999999984 5689999999 9999999998876553 45555544433 22 2468
Q ss_pred ccEEEEc-CccCC---CCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILAS-DVVYH---DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~s-d~ly~---~~~~~~ll~~l~~ll~~g 212 (282)
||+|++. .++++ ..+...+++.+.++|+||
T Consensus 102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 135 (246)
T d1y8ca_ 102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp EEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred ccccceeeeeeeccCCHHHHHHHHHHHHHhCCCC
Confidence 9999985 55544 345677899999999998
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=3.2e-12 Score=112.76 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=79.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+|++|||||||+|.+++.+|++++.+|+++|.+.++..+++++..|+. ..++.+...+..+ +.....+|
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~-----~~~i~~i~~~~~~-----l~~~~~~~ 106 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----SDKITLLRGKLED-----VHLPFPKV 106 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----TTTEEEEESCTTT-----SCCSSSCE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCc-----cccceEEEeehhh-----ccCcccce
Confidence 3588999999999999999987666799999996577888998888874 5567777654433 33335789
Q ss_pred cEEEEcCcc---CCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVV---YHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~l---y~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++..+. .+....+.++..+.++|+||
T Consensus 107 D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg 138 (328)
T d1g6q1_ 107 DIIISEWMGYFLLYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp EEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred eEEEEEecceeeccchhHHHHHHHHHhccCCC
Confidence 999986544 45677899999999999998
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=2.3e-12 Score=113.12 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=77.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+|++|||||||+|.+++.+|+.++.+|+++|.+.+...+++++..|+. .+++.+...+..+ +.....+|
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~-----~~~v~~~~~~~~~-----~~~~~~~~ 101 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----DHVVTIIKGKVEE-----VELPVEKV 101 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----TTTEEEEESCTTT-----CCCSSSCE
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC-----ccccceEeccHHH-----ccccccee
Confidence 4689999999999999999997666799999994455777788888874 5677777654443 33335789
Q ss_pred cEEEEcCc---cCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDV---VYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~---ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++.-+ +++...++.++..+.++|+||
T Consensus 102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~ 133 (316)
T d1oria_ 102 DIIISEWMGYCLFYESMLNTVLHARDKWLAPD 133 (316)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred EEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC
Confidence 99998544 345668999999999999998
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.8e-12 Score=110.28 Aligned_cols=107 Identities=14% Similarity=0.253 Sum_probs=78.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-------CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-------GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-------~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~ 176 (282)
+..+|||||||+|..+..++..+ ...++++|+ +.|++.+++++.... .+....++|.....+.+
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~ 111 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS--------NLENVKFAWHKETSSEY 111 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC--------SCTTEEEEEECSCHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc--------ccccccccchhhhhhhh
Confidence 34589999999999988876543 136899999 899999999876532 11222345544322211
Q ss_pred ------hhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 177 ------AVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 177 ------~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.....+||+|++..++|+.+++..+++.+.++|+|| |.++++.
T Consensus 112 ~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg------G~l~i~~ 160 (280)
T d1jqea_ 112 QSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN------AKMLIIV 160 (280)
T ss_dssp HHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE------EEEEEEE
T ss_pred cchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC------CEEEEEE
Confidence 123578999999999999999999999999999998 5555544
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.31 E-value=3.1e-11 Score=99.04 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=59.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+.+|++|||+|||||.+++.++..++.+|+++|+ +.+++.+++|+..++. ...+...|. .....
T Consensus 44 dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-------~~~~~~~d~--------~~~~~ 108 (201)
T d1wy7a1 44 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------KFKVFIGDV--------SEFNS 108 (201)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------SEEEEESCG--------GGCCC
T ss_pred CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-------CceEEECch--------hhhCC
Confidence 4579999999999999999988665579999999 9999999999887653 344443222 12357
Q ss_pred CccEEEEcCccC
Q 023457 182 EFDVILASDVVY 193 (282)
Q Consensus 182 ~fD~Ii~sd~ly 193 (282)
+||+||++.+..
T Consensus 109 ~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 109 RVDIVIMNPPFG 120 (201)
T ss_dssp CCSEEEECCCCS
T ss_pred cCcEEEEcCccc
Confidence 899999977754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=5.2e-11 Score=99.40 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=84.7
Q ss_pred CccceeehhH-HHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHH
Q 023457 69 GLSFKLWPAA-TTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 69 g~g~~~W~~a-~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~ 144 (282)
+..++.|+-- --|+..|..-.... ...+|.+|||||||+|..+..+|...+ ++|+++|+ +.+++.++
T Consensus 45 ~~e~R~w~p~rSKlaa~i~~~l~~l---------~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~ 115 (227)
T d1g8aa_ 45 GEEYRIWNPNRSKLGAAIMNGLKNF---------PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115 (227)
T ss_dssp TEEEEECCTTTCHHHHHHHTTCCCC---------CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred CeeEEEECCCccHHHHHHHcccccc---------ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH
Confidence 4567889832 23444444433222 456799999999999999999997764 79999999 99999999
Q ss_pred HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 145 FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+++..+ .+.....+-.. +.........+|+|+. | +.+......+++.+.++|+||
T Consensus 116 ~~a~~~~--------~~~~i~~d~~~--~~~~~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~Lkpg 171 (227)
T d1g8aa_ 116 PIVEERR--------NIVPILGDATK--PEEYRALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLKRG 171 (227)
T ss_dssp HHHSSCT--------TEEEEECCTTC--GGGGTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEE
T ss_pred HHHHhcC--------CceEEEEECCC--cccccccccceEEEEE-E-ccccchHHHHHHHHHHhcccC
Confidence 8876432 33333322222 3333333467888876 3 445667888999999999998
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.7e-11 Score=103.78 Aligned_cols=96 Identities=24% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+.+|||||||+|..++.+|...+ .+|+++|+ +.+++.+++|+..++. .++.+..-||.+ .+ ...+
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~------~~v~~~~~d~~~----~~--~~~~ 175 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFS----AL--AGQQ 175 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTG----GG--TTCC
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc------ccceeeeccccc----cc--CCCc
Confidence 356899999999999999987664 79999999 9999999999998874 357777766654 11 2468
Q ss_pred ccEEEEcCccCCCC-------------------------CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDH-------------------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~-------------------------~~~~ll~~l~~ll~~g 212 (282)
||+|+++.+..... .+..++....++|+++
T Consensus 176 fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~ 230 (274)
T d2b3ta1 176 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG 230 (274)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred eeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCC
Confidence 99999987754322 1455777777888887
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.25 E-value=1.6e-11 Score=104.00 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=87.7
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...+|.+|||+|||+|.+++.+|+..+ ++|+++|. +++++.+++|+..++. ..++.+...|+.+. +
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----~~nv~~~~~Di~~~----~-- 150 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADF----I-- 150 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTC----C--
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----CCceEEEEeeeecc----c--
Confidence 345799999999999999999997654 69999999 9999999999987653 45677766555441 1
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCc
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFD 246 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ 246 (282)
.+..||.|+.. ..+...++..+.++|+|| |.+++.+ ..........+.++ .+|.
T Consensus 151 ~~~~fD~V~ld-----~p~p~~~l~~~~~~LKpG------G~lv~~~---P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 151 SDQMYDAVIAD-----IPDPWNHVQKIASMMKPG------SVATFYL---PNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp CSCCEEEEEEC-----CSCGGGSHHHHHHTEEEE------EEEEEEE---SSHHHHHHHHHHSGGGTEE
T ss_pred ccceeeeeeec-----CCchHHHHHHHHHhcCCC------ceEEEEe---CCcChHHHHHHHHHHCCCc
Confidence 24679999872 345667899999999998 5555433 33334456666665 4674
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.7e-11 Score=107.15 Aligned_cols=99 Identities=22% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..++++|||||||+|.+++.+|++++.+|+++|. +.+. .+++++..|+. ..++.+...+..+ +.....
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~-----~~~i~~~~~~~~~-----l~~~~~ 101 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKL-----EDTITLIKGKIEE-----VHLPVE 101 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTC-----TTTEEEEESCTTT-----SCCSCS
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCC-----CccceEEEeeHHH-----hcCccc
Confidence 3578999999999999999999776679999999 6554 45666666663 5567776644333 333357
Q ss_pred CccEEEEcCccC---CCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVY---HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly---~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|++.-+.+ ....++.++....++|+||
T Consensus 102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~ 135 (311)
T d2fyta1 102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG 135 (311)
T ss_dssp CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred cceEEEEeeeeeecccccccHHHHHHHHhcCCCC
Confidence 899999854433 3445778888889999998
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=9.8e-12 Score=107.61 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=72.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+++|||||||+|..++.+|.. +.+|+++|+ +.||+.++++...++.... .....+...+|...+. .+ .....||
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~-~~~~~fd 131 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPA--FDKWVIEEANWLTLDK-DV-PAGDGFD 131 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHH--HHTCEEEECCGGGHHH-HS-CCTTCEE
T ss_pred CCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccc--cceeeeeecccccccc-cc-CCCCCce
Confidence 679999999999999999854 689999999 9999999998876553211 1123444555543110 11 1246899
Q ss_pred EEEEc-CccCCCC-------CHHHHHHHHHHHHhcC
Q 023457 185 VILAS-DVVYHDH-------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~s-d~ly~~~-------~~~~ll~~l~~ll~~g 212 (282)
+|++. +++.|.. +...+++.+.++|+||
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 167 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 167 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence 99975 4565432 3667999999999998
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.5e-12 Score=106.82 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=71.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++|||||||+|..+..+++..+++|+++|+ +.+++.++++..... ..+.....++.. ........+|
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~f 122 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWED---VAPTLPDGHF 122 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHH---HGGGSCTTCE
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-------cccccccccccc---cccccccccc
Confidence 48899999999999999998655679999999 999999998876533 234444333222 0112235689
Q ss_pred cEEEE-----cCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILA-----SDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~-----sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|.|+. ...+++..+.+.+++.+.++|+||
T Consensus 123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG 156 (229)
T d1zx0a1 123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 156 (229)
T ss_dssp EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred cceeecccccccccccccCHHHHHHHHHHHcCCC
Confidence 98874 444556667888999999999998
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=7.7e-12 Score=102.61 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=70.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..+..+ ++++++|+ +.+++.++++ .+.+...+ ..+++..+.+||
T Consensus 37 ~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~-------------~~~~~~~d-----~~~l~~~~~~fD 93 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR-------------GVFVLKGT-----AENLPLKDESFD 93 (208)
T ss_dssp SSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT-------------TCEEEECB-----TTBCCSCTTCEE
T ss_pred CCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc-------------cccccccc-----cccccccccccc
Confidence 558999999999876554 45789999 9999988752 23333322 223444467899
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
+|+++.++++.++...+++.+.++|+|| |.+++...
T Consensus 94 ~I~~~~~l~h~~d~~~~l~~~~~~L~pg------G~l~i~~~ 129 (208)
T d1vlma_ 94 FALMVTTICFVDDPERALKEAYRILKKG------GYLIVGIV 129 (208)
T ss_dssp EEEEESCGGGSSCHHHHHHHHHHHEEEE------EEEEEEEE
T ss_pred ccccccccccccccccchhhhhhcCCCC------ceEEEEec
Confidence 9999999999999999999999999998 56555543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=1.3e-10 Score=96.15 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=68.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+|.+|||||||+|..+..+|+..+ .+|+++|+ +.+++.++.|+...+. .++.+.. ++ ........
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------~n~~~~~---~d--~~~~~~~~ 142 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVC---GD--GYYGVPEF 142 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEE---SC--GGGCCGGG
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------ccccccc---Cc--hHHccccc
Confidence 4588999999999999999987765 58999999 9999999999987663 3444433 33 22222224
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|++...+++.. +.+.+.|+||
T Consensus 143 ~~fD~I~~~~~~~~~p------~~l~~~LkpG 168 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVP------ETWFTQLKEG 168 (213)
T ss_dssp CCEEEEEECSBBSCCC------HHHHHHEEEE
T ss_pred cchhhhhhhccHHHhH------HHHHHhcCCC
Confidence 6899999998886543 3456779998
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=8.5e-12 Score=106.59 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=86.5
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccccccc------------------------C
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISL------------------------R 157 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~------------------------~ 157 (282)
..+|.+|||||||+|..++..+.....+|+++|+ +.|++.+++++......... .
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 4568999999999998886665566679999999 99999999877543211000 0
Q ss_pred CCcEEEEEEEeCCCCcc-chhhcCCCccEEEEcCccCCCC----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec---
Q 023457 158 GGSVHVAPLRWGEAEAN-DVAVVGREFDVILASDVVYHDH----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR--- 229 (282)
Q Consensus 158 ~~~v~~~~ld~~~~~~~-~~~~~~~~fD~Ii~sd~ly~~~----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~--- 229 (282)
.....+...|....... ........||+|++..++++.. .+..+++.+.++|+|| |.+++......
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPG------G~li~~~~~~~~~~ 205 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG------GHLLLIGALEESWY 205 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE------EEEEEEEEESCCEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCC------CEEEEecccCCccc
Confidence 00011111122211110 1111245799999999987642 5788999999999998 55544332111
Q ss_pred --------Cc-ccHHHHHHHHh-hcCceEEEc
Q 023457 230 --------RW-KKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 230 --------~~-~~~~~f~~~~~-~~f~ve~v~ 251 (282)
.+ -..+.+.+.+. .||++..+.
T Consensus 206 ~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 206 LAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 11 12445555554 489876543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.2e-11 Score=97.50 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=73.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+||||+||+|.+|+.++.+++.+|+++|. +.+++.+++|+..++. .++.+...|... .+.....+|
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~------~~~~ii~~d~~~----~l~~~~~~f 112 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMS----FLAQKGTPH 112 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHH----HHSSCCCCE
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc------cceeeeeecccc----ccccccccc
Confidence 47799999999999999998777789999999 9999999999987653 244444322211 122235689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHH--HHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRL--FLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~--ll~~g 212 (282)
|+|++ |+-|.....+.++..+.. +|+++
T Consensus 113 DlIf~-DPPY~~~~~~~~l~~l~~~~~L~~~ 142 (183)
T d2fpoa1 113 NIVFV-DPPFRRGLLEETINLLEDNGWLADE 142 (183)
T ss_dssp EEEEE-CCSSSTTTHHHHHHHHHHTTCEEEE
T ss_pred CEEEE-cCccccchHHHHHHHHHHCCCCCCC
Confidence 99999 555777788888888876 47776
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=1e-10 Score=99.86 Aligned_cols=122 Identities=15% Similarity=0.045 Sum_probs=87.7
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...+|.+|||+|||+|.+++.+|+..+ ++|+++|. +++++.+++|+...+. ..++.+..-|... ..
T Consensus 100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----~~~v~~~~~d~~~------~~ 168 (266)
T d1o54a_ 100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISE------GF 168 (266)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGG------CC
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----ccCcEEEeccccc------cc
Confidence 346799999999999999999997654 69999999 9999999999998764 2345443322111 11
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh-cCceE
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK-LFDVE 248 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f~ve 248 (282)
....||.|+. +..+...+++.+.++|+|| |.+++.++ .........+.+++ +|...
T Consensus 169 ~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpG------G~lv~~~P---~~~Qv~~~~~~l~~~gF~~i 225 (266)
T d1o54a_ 169 DEKDVDALFL-----DVPDPWNYIDKCWEALKGG------GRFATVCP---TTNQVQETLKKLQELPFIRI 225 (266)
T ss_dssp SCCSEEEEEE-----CCSCGGGTHHHHHHHEEEE------EEEEEEES---SHHHHHHHHHHHHHSSEEEE
T ss_pred cccceeeeEe-----cCCCHHHHHHHHHhhcCCC------CEEEEEeC---cccHHHHHHHHHHHCCceeE
Confidence 2456888875 4467788999999999999 67666553 33344566666654 77533
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.16 E-value=1.5e-10 Score=98.56 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=73.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|.+|||+|||+|..++.+|+.++++|+++|+ +.+++.+++|+..|++ .+++.+.+.|..+ +. ....|
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----~~~v~~~~~D~~~-----~~-~~~~~ 175 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRD-----FP-GENIA 175 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTT-----CC-CCSCE
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----CceEEEEEcchHH-----hc-cCCCC
Confidence 48899999999999999999776679999999 9999999999999986 5677777655443 21 14579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|.|++..+-+.. .++....+++++|
T Consensus 176 D~Ii~~~p~~~~----~~l~~a~~~l~~g 200 (260)
T d2frna1 176 DRILMGYVVRTH----EFIPKALSIAKDG 200 (260)
T ss_dssp EEEEECCCSSGG----GGHHHHHHHEEEE
T ss_pred CEEEECCCCchH----HHHHHHHhhcCCC
Confidence 999997665433 4555666788887
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.15 E-value=7e-11 Score=100.62 Aligned_cols=122 Identities=14% Similarity=0.100 Sum_probs=87.6
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...+|.+|||+|||+|.+++.+|...+ ++|+++|. +++++.+++|+...... ...++.+...|.. +...
T Consensus 93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~---~~~nv~~~~~d~~-----~~~~ 164 (264)
T d1i9ga_ 93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---PPDNWRLVVSDLA-----DSEL 164 (264)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---CCTTEEEECSCGG-----GCCC
T ss_pred CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC---CCceEEEEecccc-----cccc
Confidence 345799999999999999999997764 69999999 99999999999864211 1345555543332 2223
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-h-cC
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-K-LF 245 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~-~f 245 (282)
.+..||.|+. +..+....+..+.++|+|| |.+++.+ .+....+...+.++ + +|
T Consensus 165 ~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpG------G~lv~~~---P~i~Qv~~~~~~l~~~~~f 219 (264)
T d1i9ga_ 165 PDGSVDRAVL-----DMLAPWEVLDAVSRLLVAG------GVLMVYV---ATVTQLSRIVEALRAKQCW 219 (264)
T ss_dssp CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEE------EEEEEEE---SSHHHHHHHHHHHHHHSSB
T ss_pred cCCCcceEEE-----ecCCHHHHHHHHHhccCCC------CEEEEEe---CccChHHHHHHHHHHcCCe
Confidence 3678999986 3456778899999999998 5655544 44444566666664 3 56
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.15 E-value=3.7e-11 Score=105.65 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=85.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++|||+|||+|..++.+|..++.+|+++|+ +.+++.+++|+..|++ ..++.+...|..+. ...+.....+|
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----~~~~~~~~~d~~~~-~~~~~~~~~~f 218 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEE-MEKLQKKGEKF 218 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHH-HHHHHHTTCCE
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----Cccceeeechhhhh-hHHHHhccCCC
Confidence 48899999999999999998666679999999 9999999999999996 34566555332210 00122235689
Q ss_pred cEEEEcCccCCCC---------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYHDH---------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~~~---------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
|+|++..+.+... .+..++..+.++|+|| +.++++.... .-..+.|.+.+.
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-------G~lv~~s~s~-~~~~~~f~~~v~ 278 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-------GILVTCSCSQ-HVDLQMFKDMII 278 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-------EEEEEEECCT-TSCHHHHHHHHH
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-------cEEEEEeCCc-cCCHHHHHHHHH
Confidence 9999865544321 2556777888889998 4444443222 234566766553
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.14 E-value=1.2e-10 Score=98.98 Aligned_cols=102 Identities=19% Similarity=0.101 Sum_probs=80.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..++|||||||+|..+..++++.+ .+++++|++++++.+++++...+. .+++.+...+... . ....|
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~-----~~ri~~~~~d~~~----~---~p~~~ 148 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----ADRVTVAEGDFFK----P---LPVTA 148 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS----C---CSCCE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCC-----cceeeeeeeeccc----c---ccccc
Confidence 346899999999999999997775 599999998899999999987764 4577777654433 1 13569
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|+|++..++|+..+ ...+++.+.+.|+|| |+++|+
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg------G~llI~ 185 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEPG------GRLLVL 185 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE------EEEEEE
T ss_pred hhhhccccccccCcHHHHHHHHHHHhhcCCc------ceeEEE
Confidence 99999999987653 457899999999998 565554
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.13 E-value=4.5e-11 Score=96.50 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=76.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..|.+||||+||+|.+|+.++.+++.+|+++|. +.++..+++|+..++. ..++.+...|.... ...+.....+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----~~~~~i~~~D~~~~-l~~~~~~~~~ 113 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRA-LEQFYEEKLQ 113 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHH-HHHHHHTTCC
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----ccccccccccchhh-hhhhcccCCC
Confidence 468899999999999999998777789999999 9999999999998774 34566666443220 0011222458
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHH--HHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRL--FLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~--ll~~g 212 (282)
||+|++ |+-|.......++..+.. +|+++
T Consensus 114 fDlIfl-DPPY~~~~~~~~l~~i~~~~~L~~~ 144 (182)
T d2fhpa1 114 FDLVLL-DPPYAKQEIVSQLEKMLERQLLTNE 144 (182)
T ss_dssp EEEEEE-CCCGGGCCHHHHHHHHHHTTCEEEE
T ss_pred cceEEe-chhhhhhHHHHHHHHHHHCCCCCCC
Confidence 999998 556777788888888754 57776
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.5e-10 Score=101.51 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=86.5
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccc-----cccCCCcEEEEEEEeCCCCcc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGL-----ISLRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~-----~~~~~~~v~~~~ld~~~~~~~ 174 (282)
..+|.+|||+|||+|.+++.+|+..+ ++|+++|+ +++++.+++|++..+.. .....+++.+...|.....
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~-- 173 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT-- 173 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc--
Confidence 35699999999999999999997764 69999999 99999999999865421 1113456666665544311
Q ss_pred chhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh---cCceEEEc
Q 023457 175 DVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK---LFDVETIH 251 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~---~f~ve~v~ 251 (282)
.......||.|+. |+ ......+..+.++|+|| |.+++.+ ..........+.++. +|..+++.
T Consensus 174 -~~~~~~~fD~V~L-D~----p~P~~~l~~~~~~LKpG------G~lv~~~---P~i~Qv~~~~~~l~~~~~~f~~i~~~ 238 (324)
T d2b25a1 174 -EDIKSLTFDAVAL-DM----LNPHVTLPVFYPHLKHG------GVCAVYV---VNITQVIELLDGIRTCELALSCEKIS 238 (324)
T ss_dssp --------EEEEEE-CS----SSTTTTHHHHGGGEEEE------EEEEEEE---SSHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred -cccCCCCcceEee-cC----cCHHHHHHHHHHhccCC------CEEEEEe---CCHHHHHHHHHHHHHcCCCceeeEEE
Confidence 1112457999987 44 34456788999999998 6655544 333344556665542 45444433
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.8e-10 Score=94.80 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=66.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch-hhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-AVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-~~~~~ 181 (282)
...+|||||||+|..++.+|... ..+|+++|+ +.+++.+++|++.|++ .+++.+...+|.......+ .....
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESEI 135 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----CcceeeeeeccHHhhhhhhhhcccC
Confidence 45689999999999999998665 579999999 9999999999999985 6678877766654221111 11245
Q ss_pred CccEEEEcCccCC
Q 023457 182 EFDVILASDVVYH 194 (282)
Q Consensus 182 ~fD~Ii~sd~ly~ 194 (282)
+||+|+++.+.|.
T Consensus 136 ~fD~ivsNPPY~~ 148 (250)
T d2h00a1 136 IYDFCMCNPPFFA 148 (250)
T ss_dssp CBSEEEECCCCC-
T ss_pred ceeEEEecCcccc
Confidence 7999999999885
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.10 E-value=9.5e-11 Score=102.69 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=87.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++|||++||+|..++.+| ..+++|+++|. +.+++.+++|+..|++ .++.+...|..+. ...+.....+|
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a-~g~~~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~-~~~~~~~~~~f 216 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLA-LGFREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDL-LRRLEKEGERF 216 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHH-HHEEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHH-HHHHHHTTCCE
T ss_pred CCCeeeccCCCCcHHHHHHH-hcCCcEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHH-hhhhHhhhcCC
Confidence 58899999999999999987 56789999999 9999999999999985 2455555443221 01122335689
Q ss_pred cEEEEcCccCCCC---------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-----hcCceEE
Q 023457 184 DVILASDVVYHDH---------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-----KLFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~~~---------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-----~~f~ve~ 249 (282)
|+|++..+.+... .+..++..+.++|+|| |. ++++.... .-....|.+.+. .+-+++.
T Consensus 217 D~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG------G~-Lv~~scs~-~~~~~~f~~~v~~a~~~a~~~~~~ 288 (318)
T d1wxxa2 217 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG------GI-LATASCSH-HMTEPLFYAMVAEAAQDAHRLLRV 288 (318)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE------EE-EEEEECCT-TSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC------CE-EEEEeCCc-ccCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999976654321 2456788888899998 44 44433222 223455555443 2445555
Q ss_pred Ec
Q 023457 250 IH 251 (282)
Q Consensus 250 v~ 251 (282)
+.
T Consensus 289 ~~ 290 (318)
T d1wxxa2 289 VE 290 (318)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=1.5e-10 Score=92.47 Aligned_cols=98 Identities=22% Similarity=0.249 Sum_probs=65.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|.+|||+|||+|..|+.++. .+++|+++|. +.+++.+++|++.++. ..++ ...+.... .........+|
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~-~ga~vv~vD~~~~a~~~~~~N~~~~~~-----~~~v--~~~~~d~~-~~~~~~~~~~f 111 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAAS-EGWEAVLVEKDPEAVRLLKENVRRTGL-----GARV--VALPVEVF-LPEAKAQGERF 111 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHH-TTCEEEEECCCHHHHHHHHHHHHHHTC-----CCEE--ECSCHHHH-HHHHHHTTCCE
T ss_pred CCCeEEEeccccchhhhhhhh-ccchhhhcccCHHHHhhhhHHHHhhcc-----ccce--eeeehhcc-cccccccCCcc
Confidence 478999999999999999875 4679999999 9999999999999875 2222 21111000 00112235689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHH-HHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLR-LFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~-~ll~~g 212 (282)
|+|++ |+-|.....+.+...+. .+++++
T Consensus 112 D~If~-DPPY~~~~~~~l~~l~~~~ll~~~ 140 (171)
T d1ws6a1 112 TVAFM-APPYAMDLAALFGELLASGLVEAG 140 (171)
T ss_dssp EEEEE-CCCTTSCTTHHHHHHHHHTCEEEE
T ss_pred ceeEE-ccccccCHHHHHHHHHHcCCcCCC
Confidence 99998 55566555444444443 357776
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.7e-10 Score=96.04 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=72.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+|.+|||||||+|..+..+|+..+ .+|+++|. +++++.+++|+...+.... ...++.+.. ++ ........
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~-~~~~~~~~~---gD--~~~~~~~~ 148 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-SSGRVQLVV---GD--GRMGYAEE 148 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-HTSSEEEEE---SC--GGGCCGGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccc-cccceEEEE---ee--cccccchh
Confidence 4688999999999999988886654 59999999 9999999999986553210 123444443 22 11112224
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
..||+|++...+.+.. ..+.+.|+|| |.+++..
T Consensus 149 ~~fD~I~~~~~~~~ip------~~l~~~LkpG------G~LV~pv 181 (224)
T d1i1na_ 149 APYDAIHVGAAAPVVP------QALIDQLKPG------GRLILPV 181 (224)
T ss_dssp CCEEEEEECSBBSSCC------HHHHHTEEEE------EEEEEEE
T ss_pred hhhhhhhhhcchhhcC------HHHHhhcCCC------cEEEEEE
Confidence 6899999988776532 3456788998 6665543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.04 E-value=4.6e-10 Score=97.38 Aligned_cols=115 Identities=19% Similarity=0.085 Sum_probs=81.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++++||||+||||..++.++ ..+++|+++|. +.+++.+++|++.|+.. ..++.+..-|.... .........+|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa-~~GA~V~~VD~s~~al~~a~~N~~ln~~~----~~~~~~i~~D~~~~-l~~~~~~~~~f 205 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAA-AAGAEVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAMKF-IQREERRGSTY 205 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHHHH-HHHHHHHTCCB
T ss_pred CCCeEEEecCCCcHHHHHHH-hCCCeEEEEeChHHHHHHHHHhhhhhccc----CCcEEEEeCCHHHh-HHHHhhcCCCC
Confidence 47899999999999999998 55679999999 99999999999999863 33455554332210 00111225789
Q ss_pred cEEEEcCccCCC----------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc
Q 023457 184 DVILASDVVYHD----------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 184 D~Ii~sd~ly~~----------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~ 231 (282)
|+||+..+-|.. ..+..++..+..+++++ |.++++.++..+.
T Consensus 206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~------g~~ll~t~~s~~~ 257 (309)
T d2igta1 206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK------ALGLVLTAYSIRA 257 (309)
T ss_dssp SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT------CCEEEEEECCTTS
T ss_pred CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC------CCEEEEecCCCCC
Confidence 999997665421 13566778888899998 5666666554443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.04 E-value=2.4e-10 Score=99.95 Aligned_cols=125 Identities=15% Similarity=0.032 Sum_probs=85.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++|||++||+|..|+.++..++.+|+++|. +.+++.+++|++.|++. ..++.+...|..+. ...+.....+|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----~~~~~~i~~d~~~~-l~~~~~~~~~f 218 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDY-FKYARRHHLTY 218 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHH-HHHHHHTTCCE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----CcceEEEEccHHHH-HHHHHhhcCCC
Confidence 48899999999999999987555568999999 99999999999999863 34566665332210 00112224689
Q ss_pred cEEEEcCccCCC---------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYHD---------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
|+||+-.+-+.. ..+..++..+.++++|| +.++++...... ....|...+.
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-------G~l~~~scs~~~-~~~~f~~~v~ 278 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-------GLIIASTNAANM-TVSQFKKQIE 278 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-------EEEEEEECCTTS-CHHHHHHHHH
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-------CEEEEEeCCccC-CHHHHHHHHH
Confidence 999997664421 13667888899999998 445544433333 3455655543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=4.7e-10 Score=95.80 Aligned_cols=86 Identities=15% Similarity=0.150 Sum_probs=64.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..+..++...+ .+|+++|+ +.+++.++++. .++.+...| ..+++..+.
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d-----~~~l~~~~~ 146 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVAS-----SHRLPFSDT 146 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECC-----TTSCSBCTT
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----------ccccceeee-----hhhccCCCC
Confidence 4577999999999999999986653 69999999 99998887642 234444433 333454578
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|++..+..+ ++.+.++|+||
T Consensus 147 sfD~v~~~~~~~~-------~~e~~rvLkpg 170 (268)
T d1p91a_ 147 SMDAIIRIYAPCK-------AEELARVVKPG 170 (268)
T ss_dssp CEEEEEEESCCCC-------HHHHHHHEEEE
T ss_pred CEEEEeecCCHHH-------HHHHHHHhCCC
Confidence 8999999776644 46788999998
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.00 E-value=5.5e-10 Score=90.02 Aligned_cols=101 Identities=22% Similarity=0.202 Sum_probs=73.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+||||.||||.+|+.++.+++.+|+++|. ..++..+++|++..+.. .....+...+... .........+|
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----~~~~~~~~~d~~~--~l~~~~~~~~f 116 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLD--FLKQPQNQPHF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHH--HTTSCCSSCCE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----ccccccccccccc--cccccccCCcc
Confidence 47799999999999999999888889999999 99999999999876531 2233333322111 00011113579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHH--HHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRL--FLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~--ll~~g 212 (282)
|+|++ |+-|.....+.++..+.. +|+++
T Consensus 117 DlIFl-DPPY~~~~~~~~l~~l~~~~~L~~~ 146 (183)
T d2ifta1 117 DVVFL-DPPFHFNLAEQAISLLCENNWLKPN 146 (183)
T ss_dssp EEEEE-CCCSSSCHHHHHHHHHHHTTCEEEE
T ss_pred cEEEe-chhHhhhhHHHHHHHHHHhCCcCCC
Confidence 99988 777887778888888865 57765
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.98 E-value=1.9e-09 Score=89.52 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=68.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|.+|||||||+|..+..+| .++++|+++|. +.+++.+++|... ..++.+...|-.. ..+ ...+
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La-~l~~~V~aiE~~~~~~~~A~~~~~~--------~~nv~~~~~d~~~----g~~-~~~p 134 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIA-EIVDKVVSVEINEKMYNYASKLLSY--------YNNIKLILGDGTL----GYE-EEKP 134 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHH-HHSSEEEEEESCHHHHHHHHHHHTT--------CSSEEEEESCGGG----CCG-GGCC
T ss_pred cccceEEEecCCCCHHHHHHH-HHhcccccccccHHHHHHHHHHHhc--------ccccccccCchhh----cch-hhhh
Confidence 458899999999999998887 45789999999 9999999887654 2356655533221 111 1467
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++...+.+. + ..+.+.|++| |++++..
T Consensus 135 fD~Iiv~~a~~~i--p----~~l~~qLk~G------GrLV~pv 165 (224)
T d1vbfa_ 135 YDRVVVWATAPTL--L----CKPYEQLKEG------GIMILPI 165 (224)
T ss_dssp EEEEEESSBBSSC--C----HHHHHTEEEE------EEEEEEE
T ss_pred HHHHHhhcchhhh--h----HHHHHhcCCC------CEEEEEE
Confidence 9999998776433 2 3455789998 6766543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.97 E-value=1.9e-09 Score=88.85 Aligned_cols=99 Identities=22% Similarity=0.255 Sum_probs=73.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..+|...+.+|+++|. +.+++.+++|+...+ ..++.+..-|.... . ....+
T Consensus 77 ~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g------~~nv~~~~gd~~~g----~-~~~~p 145 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG------VKNVHVILGDGSKG----F-PPKAP 145 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT------CCSEEEEESCGGGC----C-GGGCC
T ss_pred CccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC------CceeEEEECccccC----C-cccCc
Confidence 458899999999999999998766778999999 999999999999876 34666666443321 1 12578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||.|++...+... .+. +...|++| |++++..
T Consensus 146 fD~Iiv~~a~~~i--p~~----l~~qL~~g------GrLv~pv 176 (215)
T d1jg1a_ 146 YDVIIVTAGAPKI--PEP----LIEQLKIG------GKLIIPV 176 (215)
T ss_dssp EEEEEECSBBSSC--CHH----HHHTEEEE------EEEEEEE
T ss_pred ceeEEeecccccC--CHH----HHHhcCCC------CEEEEEE
Confidence 9999998777543 333 44567888 6665543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.95 E-value=4.8e-09 Score=85.82 Aligned_cols=96 Identities=13% Similarity=0.092 Sum_probs=73.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVGR 181 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~~ 181 (282)
+-.|||||||+|...+.+|+..+ ..|+++|+ +.++..+.+++..+++ .++.+...|... +. ....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~-----l~~~~~~~ 98 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADT-----LTDVFEPG 98 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGG-----HHHHCCTT
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhh-----hhcccCch
Confidence 34799999999999999997764 79999999 9999999999888763 356666544322 21 2367
Q ss_pred CccEEEEcCccCCCCC--------HHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHL--------FDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~--------~~~ll~~l~~ll~~g 212 (282)
.+|.|++..+..++.. ...+++.+.++|+||
T Consensus 99 ~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg 137 (204)
T d2fcaa1 99 EVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG 137 (204)
T ss_dssp SCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred hhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence 8999888765554432 268999999999998
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=2.8e-09 Score=95.69 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=73.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc--chhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN--DVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~--~~~~ 178 (282)
..+|.+|||||||+|.+.+.+|...+ ++|+|+|+ +.+++.+++++...+.....+..+.....+.+...... ....
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~ 293 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 293 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence 34688999999999999999987766 58999999 99999999988765422111112222223333321111 1111
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
....+|+|+++... +.+.+...+..+.+.|+||
T Consensus 294 ~~~~adVV~inn~~-f~~~l~~~L~ei~r~LKPG 326 (406)
T d1u2za_ 294 LIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVG 326 (406)
T ss_dssp HGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTT
T ss_pred ccccceEEEEeccc-CchHHHHHHHHHHHhcCCC
Confidence 13467899986544 5567788889999999998
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=3.8e-09 Score=90.01 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=62.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
..+|+|+|||+|..++.++....++|+++|+ +.++..+++|+..|+. ..++.+...+|.. .......+||
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~-----~~~~~i~~~~~~~----~~~~~~~~fD 181 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLE----PFKEKFASIE 181 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTG----GGGGGTTTCC
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC-----CceeEEeeccccc----ccccccCccc
Confidence 4589999999999999998665689999999 9999999999999885 5567777766655 2222246899
Q ss_pred EEEEcCc
Q 023457 185 VILASDV 191 (282)
Q Consensus 185 ~Ii~sd~ 191 (282)
+|+++.+
T Consensus 182 lIVsNPP 188 (271)
T d1nv8a_ 182 MILSNPP 188 (271)
T ss_dssp EEEECCC
T ss_pred EEEEccc
Confidence 9999855
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.81 E-value=3.7e-08 Score=80.37 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=73.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...|||||||+|-..+.+|+..+ ..++++|+ +.++..+.+++..++. .++.+...|... ..+. .....+
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~--l~~~-~~~~~~ 102 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSD--LTDY-FEDGEI 102 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSC--GGGT-SCTTCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHH--Hhhh-ccCCce
Confidence 34799999999999999997764 78999999 8999999888887763 367777655443 1111 135689
Q ss_pred cEEEEcCccCCCC--------CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDH--------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~g 212 (282)
|.|++..+-.++. ....+++.+.++|+||
T Consensus 103 ~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg 139 (204)
T d1yzha1 103 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN 139 (204)
T ss_dssp SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred ehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence 9998764443332 2378999999999998
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.80 E-value=2.6e-09 Score=88.63 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
.++.+|||||||+|..+..++...+ .+|+++|. +++++.+++|+..+..... ...++.+...|-..
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~-~~~nv~~~~~d~~~----- 152 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-DSGQLLIVEGDGRK----- 152 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-HHTSEEEEESCGGG-----
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhc-CccEEEEEeccccc-----
Confidence 4588999999999999988886543 48999999 9999999998865432100 02345555533222
Q ss_pred hhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 176 VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 176 ~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
......+||.|++.-.+...+ + .+.+.|++| |++++..
T Consensus 153 ~~~~~~~fD~Iiv~~a~~~~p--~----~l~~~Lk~g------G~lV~pv 190 (223)
T d1r18a_ 153 GYPPNAPYNAIHVGAAAPDTP--T----ELINQLASG------GRLIVPV 190 (223)
T ss_dssp CCGGGCSEEEEEECSCBSSCC--H----HHHHTEEEE------EEEEEEE
T ss_pred ccccccceeeEEEEeechhch--H----HHHHhcCCC------cEEEEEE
Confidence 111246899999987775432 2 456788998 5655543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=7.2e-09 Score=90.85 Aligned_cols=105 Identities=12% Similarity=0.001 Sum_probs=72.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccc---cCCCcEEEEEEEeCCCCccchhh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLIS---LRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~---~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
.++.+|||||||+|.+.+.+|+..+ .+++++|+ +.+++.++.++........ ....++.+...|+.+ . .+..
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~--~-~~~~ 226 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS--E-EWRE 226 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS--H-HHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc--c-cccc
Confidence 4588999999999999999987665 58999999 9999998887664321100 013456666655443 1 1111
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.....|+|+++... +.+.+...+..+.+.|+||
T Consensus 227 ~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpG 259 (328)
T d1nw3a_ 227 RIANTSVIFVNNFA-FGPEVDHQLKERFANMKEG 259 (328)
T ss_dssp HHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTT
T ss_pred ccCcceEEEEccee-cchHHHHHHHHHHHhCCCC
Confidence 11235888886554 4556778888999999998
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.4e-08 Score=80.79 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=74.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~ 180 (282)
+.++|||||||+|..++.+|...+ ++|+.+|. ++..+.++.++...+. ..++.+...+..+.....+. ...
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----~~~i~~~~Gda~e~l~~~~~~~~~ 133 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAGEA 133 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTCT
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----cceEEEEEeehhhcchhhhhhccc
Confidence 477999999999999999986653 79999999 9999999999998875 45676665332220000010 114
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|+.- .....+...+..+.++|++|
T Consensus 134 ~~fD~ifiD---~dk~~y~~~~~~~~~lL~~G 162 (219)
T d2avda1 134 GTFDVAVVD---ADKENCSAYYERCLQLLRPG 162 (219)
T ss_dssp TCEEEEEEC---SCSTTHHHHHHHHHHHEEEE
T ss_pred CCccEEEEe---CCHHHHHHHHHHHHHHhcCC
Confidence 689999983 24466788888999999997
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=5.6e-08 Score=79.86 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=67.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--cC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--VG 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--~~ 180 (282)
.++|||||||+|..++.+|..+ +++|+++|. +.+++.++.++...+. .+++.+...+..+.. ..+.. ..
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----~~~i~l~~Gd~~e~l-~~l~~~~~~ 130 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----QDKVTILNGASQDLI-PQLKKKYDV 130 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHG-GGHHHHSCC
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----Cccceeeeccccccc-cchhhcccc
Confidence 6799999999999999998654 379999999 9999999999998775 456777664433210 11111 13
Q ss_pred CCccEEEEcCccCCCCCHHH--HHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDP--LLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~--ll~~l~~ll~~g 212 (282)
..||+|+.- . +...... .+....++|+||
T Consensus 131 ~~~D~ifiD-~--~~~~~~~~~~l~~~~~lLkpG 161 (214)
T d2cl5a1 131 DTLDMVFLD-H--WKDRYLPDTLLLEKCGLLRKG 161 (214)
T ss_dssp CCEEEEEEC-S--CGGGHHHHHHHHHHTTCEEEE
T ss_pred cccceeeec-c--cccccccHHHHHHHhCccCCC
Confidence 579999973 2 2222222 244445678887
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=5.3e-07 Score=79.30 Aligned_cols=143 Identities=13% Similarity=0.044 Sum_probs=93.0
Q ss_pred ehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccc
Q 023457 75 WPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL 153 (282)
Q Consensus 75 W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~ 153 (282)
-..+..|.+.+..... ..++.+||||-||+|..|+.+| ..+++|+++|. +.+++.+++|+..|+.
T Consensus 194 ~~~~e~l~~~v~~~~~------------~~~~~~vlDLycG~G~fsl~La-~~~~~V~gvE~~~~ai~~A~~na~~n~i- 259 (358)
T d1uwva2 194 AGVNQKMVARALEWLD------------VQPEDRVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLNGL- 259 (358)
T ss_dssp HHHHHHHHHHHHHHHT------------CCTTCEEEEESCTTTTTHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHTTC-
T ss_pred hhhhhHHHHHHHHhhc------------cCCCceEEEecccccccchhcc-ccccEEEeccCcHHHHHHHHHhHHhccc-
Confidence 3456666666655432 2347799999999999999998 45689999999 9999999999999985
Q ss_pred cccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCccc
Q 023457 154 ISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKK 233 (282)
Q Consensus 154 ~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~ 233 (282)
.++.+...+-.... .........||+||.-.+= . . ....+..+.++ ++. +++++++. +.+
T Consensus 260 -----~n~~~~~~~~~~~~-~~~~~~~~~~d~vilDPPR-~-G-~~~~~~~l~~~-~~~-------~ivYVSCn---p~T 319 (358)
T d1uwva2 260 -----QNVTFYHENLEEDV-TKQPWAKNGFDKVLLDPAR-A-G-AAGVMQQIIKL-EPI-------RIVYVSCN---PAT 319 (358)
T ss_dssp -----CSEEEEECCTTSCC-SSSGGGTTCCSEEEECCCT-T-C-CHHHHHHHHHH-CCS-------EEEEEESC---HHH
T ss_pred -----ccceeeecchhhhh-hhhhhhhccCceEEeCCCC-c-c-HHHHHHHHHHc-CCC-------EEEEEeCC---HHH
Confidence 35555554333211 1122224679999884442 2 1 23466666553 343 77777764 223
Q ss_pred H-HHHHHHHhhcCceEEEc
Q 023457 234 D-SVFFKKAKKLFDVETIH 251 (282)
Q Consensus 234 ~-~~f~~~~~~~f~ve~v~ 251 (282)
. +..-...+.+|.++.+.
T Consensus 320 laRDl~~l~~~gy~l~~i~ 338 (358)
T d1uwva2 320 LARDSEALLKAGYTIARLA 338 (358)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCeEeEEE
Confidence 2 33333446789998775
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.64 E-value=3.6e-07 Score=79.51 Aligned_cols=154 Identities=12% Similarity=-0.000 Sum_probs=97.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~ 176 (282)
..+.+|||.|||+|...+.+..... .+++++|+ +.++..++.|...++. .......++..
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~------ 182 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLLHQDGLA------ 182 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCTTS------
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-------hhhhhcccccc------
Confidence 3467999999999999888865432 37999999 9999999998887653 22333322221
Q ss_pred hhcCCCccEEEEcCccCCCC------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec-CcccHHHH
Q 023457 177 AVVGREFDVILASDVVYHDH------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR-RWKKDSVF 237 (282)
Q Consensus 177 ~~~~~~fD~Ii~sd~ly~~~------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~-~~~~~~~f 237 (282)
.....+||+|+++.++.... ....++..+.++|+++ |.++++++..- +......+
T Consensus 183 ~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~------G~~~~I~p~~~l~~~~~~~l 256 (328)
T d2f8la1 183 NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG------GYLFFLVPDAMFGTSDFAKV 256 (328)
T ss_dssp CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE------EEEEEEEEGGGGGSTTHHHH
T ss_pred ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCC------CceEEEecCccccCchhHHH
Confidence 11246899999998863211 1334688888999998 78778776421 11223445
Q ss_pred HHHHhhcCceEEEcccC--CCCCcccceEEEEEeeecCCCC
Q 023457 238 FKKAKKLFDVETIHADL--PCNGARVGVVVYRMTGKAKSSK 276 (282)
Q Consensus 238 ~~~~~~~f~ve~v~~~~--~~~~~~~~~~v~~~~~~~~~~~ 276 (282)
.+.+.+.+.++.+-.-+ .+........++.+.|++....
T Consensus 257 R~~L~~~~~i~~ii~lp~~~F~~~~~~t~ilvl~K~~~~~~ 297 (328)
T d2f8la1 257 DKFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADVDVK 297 (328)
T ss_dssp HHHHHHHEEEEEEEECCGGGSCC-CCCEEEEEEEECCTTCC
T ss_pred HHHHHhCCcEEEEEECCccccCCCCCCeEEEEEECCCCCcC
Confidence 55555556666443221 2344455567888877654433
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.57 E-value=6.1e-07 Score=74.95 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=68.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
..+|||||||+|..++.++++.+ .++++.|+|.+++.. . ..+++.+...|+-+ . .+..|
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~-------~-----~~~ri~~~~gd~~~----~----~p~~D 141 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENA-------P-----PLSGIEHVGGDMFA----S----VPQGD 141 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTC-------C-----CCTTEEEEECCTTT----C----CCCEE
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhcc-------C-----CCCCeEEecCCccc----c----cccce
Confidence 46899999999999999997776 689999997765321 1 25678888766544 1 23569
Q ss_pred EEEEcCccCCCCC--HHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g 212 (282)
+|+.+.++|+..+ ...+++.+++.|+||
T Consensus 142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pg 171 (244)
T d1fp1d2 142 AMILKAVCHNWSDEKCIEFLSNCHKALSPN 171 (244)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EEEEehhhhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999997654 568899999999998
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.56 E-value=2.2e-07 Score=76.85 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=75.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--- 178 (282)
+.++|||||+++|.-++.+|..++ ++|+.+|. +...+.+++++...+. .+++.+...+..+ .++.
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----~~~i~~~~g~a~~----~L~~l~~ 129 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALP----VLDEMIK 129 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHH----HHHHHHH
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----ccceeeeehHHHH----HHHHHHh
Confidence 367999999999999999997664 79999999 9999999999998875 4567776643322 1211
Q ss_pred ---cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 ---VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ---~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
...+||+|+. |. +...+...++.+.++|++|
T Consensus 130 ~~~~~~~fD~iFi-Da--~k~~y~~~~e~~~~ll~~g 163 (227)
T d1susa1 130 DEKNHGSYDFIFV-DA--DKDNYLNYHKRLIDLVKVG 163 (227)
T ss_dssp CGGGTTCBSEEEE-CS--CSTTHHHHHHHHHHHBCTT
T ss_pred ccccCCceeEEEe-cc--chhhhHHHHHHHHhhcCCC
Confidence 1458999998 43 3466888999999999998
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=8.6e-07 Score=72.10 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=67.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|+|||+|.|.+|+.+|...+ .+|+.+|. ..=+..++.-+...++ .++.+..-...+ +. ...+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-----~~-~~~~ 132 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEE-----FP-SEPP 132 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTT-----SC-CCSC
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC------cceeeeccchhh-----hc-cccc
Confidence 356999999999999999997665 69999999 7767777666655442 356665533332 11 1457
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++--+ ..+..+++.+..+++++
T Consensus 133 fD~V~sRA~----~~~~~ll~~~~~~l~~~ 158 (207)
T d1jsxa_ 133 FDGVISRAF----ASLNDMVSWCHHLPGEQ 158 (207)
T ss_dssp EEEEECSCS----SSHHHHHHHHTTSEEEE
T ss_pred cceehhhhh----cCHHHHHHHHHHhcCCC
Confidence 999887433 56888999999999987
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.31 E-value=6.2e-07 Score=74.91 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
..+|||||||+|..++.++++.+ .++++.|++.+++.+. ..+++.+...|+.+ . ...+|
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~------------~~~rv~~~~gD~f~----~----~p~aD 140 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS------------GSNNLTYVGGDMFT----S----IPNAD 140 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC------------CBTTEEEEECCTTT----C----CCCCS
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCc------------ccCceEEEecCccc----C----CCCCc
Confidence 45899999999999999987775 6999999987654331 24678888766544 1 24689
Q ss_pred EEEEcCccCCCCC--HHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g 212 (282)
+++...++|+..+ ...+++.+++.|+||
T Consensus 141 ~~~l~~vLHdw~d~~~~~iL~~~~~al~pg 170 (244)
T d1fp2a2 141 AVLLKYILHNWTDKDCLRILKKCKEAVTND 170 (244)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHSGG
T ss_pred EEEEEeecccCChHHHHHHHHHHHHHcCcc
Confidence 9999999997654 457899999999997
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=3.2e-07 Score=73.92 Aligned_cols=110 Identities=19% Similarity=0.153 Sum_probs=76.4
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch--hh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV--AV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~--~~ 178 (282)
..++.+|||++||+|..+..++... ..+|+++|. +.+++.+++++... ..++.+.+.++.+ .... ..
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~--~~~~~~~~ 91 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYRE--ADFLLKTL 91 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGG--HHHHHHHT
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhh--HHHHHHHc
Confidence 3468899999999999998888765 479999999 99999999987653 3466666655544 1111 11
Q ss_pred cCCCccEEEEcCcc---------CCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 179 VGREFDVILASDVV---------YHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 179 ~~~~fD~Ii~sd~l---------y~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
...+||.|+.--.+ .........+....++|+++ |.++++..+
T Consensus 92 ~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g------G~l~ii~f~ 143 (192)
T d1m6ya2 92 GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG------GRIVVISFH 143 (192)
T ss_dssp TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE------EEEEEEESS
T ss_pred CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC------Ceeeeeccc
Confidence 14689999863222 11223567777888888998 676666543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.22 E-value=2.5e-06 Score=69.33 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=80.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||.|||+|.....+..... ..++++|+ +.++..++ ...+...++.. ....
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---------------~~~~~~~~~~~------~~~~ 76 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---------------WAEGILADFLL------WEPG 76 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---------------TEEEEESCGGG------CCCS
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---------------cceeeeeehhc------cccc
Confidence 4578999999999988777664443 57999999 65432221 12223222222 1124
Q ss_pred CCccEEEEcCccCCCC-----------------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-
Q 023457 181 REFDVILASDVVYHDH-----------------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR- 230 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~-----------------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~- 230 (282)
..||+|+++.+.-... ....++....++|+++ |.++++++..--
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~------G~~~~I~p~~~l~ 150 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG------GVLVFVVPATWLV 150 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEE------EEEEEEEEGGGGT
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccC------CceEEEEeeeecc
Confidence 6899999986642110 1345566777888888 787777753211
Q ss_pred cccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeeec
Q 023457 231 WKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 231 ~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
......+.+.+.+.+.++.......+.+......++.+.|++
T Consensus 151 ~~~~~~lR~~l~~~~~i~i~~~~~~F~~~~v~t~i~~~~k~~ 192 (223)
T d2ih2a1 151 LEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSG 192 (223)
T ss_dssp CGGGHHHHHHHHHHSEEEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred CcchHHHHHHHHhcCCEEEEcchhcCCCCCCcEEEEEEEeCC
Confidence 112344444444445554332222334445566777777653
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.20 E-value=1.2e-05 Score=66.55 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---hc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA---VV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~---~~ 179 (282)
.+.+|+|||+|.|.+|+.+|...+ .+|+.+|. ..=...++.-+..-++ .++.+..-. .+.+. ..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L------~n~~i~~~R-----~E~~~~~~~~ 138 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDR-----AETFGQRKDV 138 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESC-----HHHHTTCTTT
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC------CCcEEEeeh-----hhhccccccc
Confidence 467999999999999999997654 69999998 6655555554444332 234443321 11111 12
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
...||+|++--+ ..+..++.....+++++
T Consensus 139 ~~~~D~v~sRAv----a~l~~ll~~~~~~l~~~ 167 (239)
T d1xdza_ 139 RESYDIVTARAV----ARLSVLSELCLPLVKKN 167 (239)
T ss_dssp TTCEEEEEEECC----SCHHHHHHHHGGGEEEE
T ss_pred cccceEEEEhhh----hCHHHHHHHHhhhcccC
Confidence 457999998433 57889999999999987
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.11 E-value=1.2e-06 Score=73.03 Aligned_cols=93 Identities=17% Similarity=0.085 Sum_probs=69.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
..+|||||||+|..++.++++.+ .++++.|++.+++.++ ...++.....|+.+ .+ +..|
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~------------~~~r~~~~~~d~~~----~~----P~ad 141 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP------------SYPGVEHVGGDMFV----SI----PKAD 141 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCC------------CCTTEEEEECCTTT----CC----CCCS
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcc------------cCCceEEecccccc----cC----CCcc
Confidence 46899999999999999998776 6999999976543221 24577777766654 11 2357
Q ss_pred EEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 185 VILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 185 ~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+++...++++.. ....+++.+++.|+|+ |+++++
T Consensus 142 ~~~l~~vlh~~~d~~~~~iL~~~~~al~pg------g~~li~ 177 (243)
T d1kyza2 142 AVFMKWICHDWSDEHCLKFLKNCYEALPDN------GKVIVA 177 (243)
T ss_dssp CEECSSSSTTSCHHHHHHHHHHHHHHCCSS------SCEEEE
T ss_pred eEEEEEEeecCCHHHHHHHHHHHHHhcCCC------ceEEEE
Confidence 788888887654 4678999999999998 666554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.09 E-value=6.5e-06 Score=72.73 Aligned_cols=100 Identities=18% Similarity=-0.001 Sum_probs=69.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhccccccc---------CCCcEEEEEEEeCCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISL---------RGGSVHVAPLRWGEAEA 173 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~---------~~~~v~~~~ld~~~~~~ 173 (282)
++++|||..||||.-|+..|+..+ ..|++.|+ +.+++.+++|++.|+..... ....+.+...|+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~--- 121 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR--- 121 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH---
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhh---
Confidence 367999999999999998776554 58999999 99999999999999853110 01122233222211
Q ss_pred cchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 174 NDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 174 ~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+......||+|.. |++ ....++++...+.++.+
T Consensus 122 -~~~~~~~~fDvIDi-DPf---Gs~~pfldsAi~a~~~~ 155 (375)
T d2dula1 122 -LMAERHRYFHFIDL-DPF---GSPMEFLDTALRSAKRR 155 (375)
T ss_dssp -HHHHSTTCEEEEEE-CCS---SCCHHHHHHHHHHEEEE
T ss_pred -hhHhhcCcCCcccC-CCC---CCcHHHHHHHHHHhccC
Confidence 11122457999888 553 34567888888888877
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.02 E-value=1.1e-05 Score=69.54 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=81.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..++||.||.|.|.....+++..+ .+|+++|+ +.+++.+++..... .... ...++++..-|+.. -+.....
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~--~d~rv~i~~~Da~~----~l~~~~~ 150 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF--DDPRAVLVIDDARA----YLERTEE 150 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG--GCTTEEEEESCHHH----HHHHCCC
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCcc--CCCceEEEEchHHH----HhhhcCC
Confidence 367999999999998888765443 69999999 99999999876431 1111 24567666544332 2233467
Q ss_pred CccEEEE--cCccCCCC-----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee--cCcccHHHHHHHHhhcCceE
Q 023457 182 EFDVILA--SDVVYHDH-----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL--RRWKKDSVFFKKAKKLFDVE 248 (282)
Q Consensus 182 ~fD~Ii~--sd~ly~~~-----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~--~~~~~~~~f~~~~~~~f~ve 248 (282)
+||+||. .|...... .-..+++.+++.|+++ |.+++-+... ..........+.++..|..-
T Consensus 151 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~------Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V 220 (312)
T d1uira_ 151 RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG------GVMGMQTGMILLTHHRVHPVVHRTVREAFRYV 220 (312)
T ss_dssp CEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE------EEEEEEEEEECC---CHHHHHHHHHHTTCSEE
T ss_pred cccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC------ceEEEecCCcccchHHHHHHHHHHHHHhCceE
Confidence 8999995 33333211 1357899999999998 4443333221 11111234445666677443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.99 E-value=2.5e-05 Score=66.06 Aligned_cols=131 Identities=18% Similarity=0.093 Sum_probs=80.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccccc----ccCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLI----SLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~----~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
+.++||-||+|.|.....+++....+|+++|+ +.+++.+++-...+.... .....++.+..-|.. .+-..
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~-----~~l~~ 146 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF-----EFIKN 146 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH-----HHHHH
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHH-----HHHhc
Confidence 36799999999999888776544578999999 999999987554322110 012456666653321 11123
Q ss_pred CCCccEEEEcCccCCCCC-----HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc--ccHHHHHHHHhhcCceE
Q 023457 180 GREFDVILASDVVYHDHL-----FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW--KKDSVFFKKAKKLFDVE 248 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~-----~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~--~~~~~f~~~~~~~f~ve 248 (282)
..+||+||. |+...... -..+++.+++.|+++ |. +++-...... .........+.+-|..-
T Consensus 147 ~~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~------Gv-~v~q~~s~~~~~~~~~~~~~tl~~~F~~v 214 (276)
T d1mjfa_ 147 NRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNP------GI-YVTQAGSVYLFTDELISAYKEMKKVFDRV 214 (276)
T ss_dssp CCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEE------EE-EEEEEEETTTSHHHHHHHHHHHHHHCSEE
T ss_pred cCCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCC------ce-EEEecCCcchhHHHHHHHHHHHHhhCCee
Confidence 578999996 44332111 257899999999998 44 3333222222 22345556666667543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.94 E-value=1.3e-05 Score=66.20 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=45.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWG 169 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~ 169 (282)
.++.+|||||||+|.++..++. .+++|+++|+ +.+++.++.+... ..++.+...|..
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~-~~~~v~avE~D~~l~~~l~~~~~~--------~~n~~i~~~D~l 77 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQ-RCNFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDIL 77 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHH-HSSEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGG
T ss_pred CCCCeEEEECCCchHHHHHHHh-CcCceEEEeeccchHHHHHHHhhc--------ccchhhhhhhhh
Confidence 4688999999999999999985 5689999999 8898988876543 345666654443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.94 E-value=6.1e-05 Score=67.38 Aligned_cols=154 Identities=17% Similarity=0.046 Sum_probs=98.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--------------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEe
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--------------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRW 168 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--------------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~ 168 (282)
..+.+|+|-.||+|..-+.+..... ..+.+.|+ +.+...++.|+..++... ....+..-++
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~----~~~~i~~~d~ 236 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT----DRSPIVCEDS 236 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS----SCCSEEECCT
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc----ccceeecCch
Confidence 4578999999999999888875431 35899999 999999999998876421 1222222222
Q ss_pred CCCCccchhhcCCCccEEEEcCccCCCC-----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee--c
Q 023457 169 GEAEANDVAVVGREFDVILASDVVYHDH-----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL--R 229 (282)
Q Consensus 169 ~~~~~~~~~~~~~~fD~Ii~sd~ly~~~-----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~--~ 229 (282)
.. .....+||+||++.++-... ....++..+..+|+++ |+++++++.. -
T Consensus 237 l~------~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~------G~~~iI~p~~~L~ 304 (425)
T d2okca1 237 LE------KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG------GRAAVVLPDNVLF 304 (425)
T ss_dssp TT------SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE------EEEEEEEEHHHHH
T ss_pred hh------hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC------CeEEEEechHHhh
Confidence 11 11245899999998873210 1245888888999998 7888888742 1
Q ss_pred CcccHHHHHHHHhhcCceEEEcccC--CCCCcccceEEEEEeeecC
Q 023457 230 RWKKDSVFFKKAKKLFDVETIHADL--PCNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 230 ~~~~~~~f~~~~~~~f~ve~v~~~~--~~~~~~~~~~v~~~~~~~~ 273 (282)
+......+.+.+.+.+.++.|-.-+ .+........|+.+.|++.
T Consensus 305 ~~~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~ 350 (425)
T d2okca1 305 EAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP 350 (425)
T ss_dssp CSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred hhhhHHHHHHHHHHhcchhHhhcCCcccccCCCCCeEEEEEECCCC
Confidence 2223345555555556666554332 2333445567777777653
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.91 E-value=2e-05 Score=63.04 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=61.0
Q ss_pred CCcEEEeCCCCCHHH----HHHHHHhC-----CEEEEEeh-HhHHHHHHHHHHhcccccc-----------c--C--C--
Q 023457 106 QLNILELGSGTGLVG----MAAAAILG-----AKVTVTDL-PHVLTNLQFNVDANAGLIS-----------L--R--G-- 158 (282)
Q Consensus 106 g~~VLELGcGtG~~s----i~la~~~~-----~~V~~tD~-~~~l~~~~~n~~~n~~~~~-----------~--~--~-- 158 (282)
..+|+..|||||--. +.+..... -+|++||+ +.+++.++..+-....... . . .
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 569999999999843 33332221 27999999 8899888753311110000 0 0 0
Q ss_pred --------CcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC--CCCHHHHHHHHHHHHhcC
Q 023457 159 --------GSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH--DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 159 --------~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g 212 (282)
..+.....+... ........||+|+|-.++.+ .+....+++.+.+.|+||
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~----~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pG 164 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLLE----KQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 164 (193)
T ss_dssp EEECHHHHTTEEEEECCTTC----SSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred eehHHHHHHHHHHhhhhccc----cccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCC
Confidence 011222111111 11112468999999988754 345578999999999998
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=0.00015 Score=66.59 Aligned_cols=160 Identities=13% Similarity=0.017 Sum_probs=98.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-------------------CEEEEEeh-HhHHHHHHHHHHhccccccc-CCCcEE
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-------------------AKVTVTDL-PHVLTNLQFNVDANAGLISL-RGGSVH 162 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-------------------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~-~~~~v~ 162 (282)
..+.+|+|-.||+|..-+.+..... ..+++.|+ +.+...++.|+..++..... ....
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~-- 240 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA-- 240 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS--
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccch--
Confidence 4577999999999999887764431 26899999 99999999998876642110 0011
Q ss_pred EEEEEeCCCCccchhhcCCCccEEEEcCccCCCC--------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 163 VAPLRWGEAEANDVAVVGREFDVILASDVVYHDH--------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 163 ~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~--------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
+.+.+....+ .....+||+|+++.++-... ..-.++..+.+.|++| |+++++++..
T Consensus 241 ---~~~~~~l~~d-~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g------Gr~aiIlP~~ 310 (524)
T d2ar0a1 241 ---IRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG------GRAAVVVPDN 310 (524)
T ss_dssp ---EEESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE------EEEEEEEEHH
T ss_pred ---hhhhhhhhhc-ccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc------CcEEEEEehH
Confidence 1112211111 11246799999998874211 1235788888999998 7888888743
Q ss_pred c--CcccHHHHHHHHhhcCceEEEcccC--CCCCcccceEEEEEeeecCCC
Q 023457 229 R--RWKKDSVFFKKAKKLFDVETIHADL--PCNGARVGVVVYRMTGKAKSS 275 (282)
Q Consensus 229 ~--~~~~~~~f~~~~~~~f~ve~v~~~~--~~~~~~~~~~v~~~~~~~~~~ 275 (282)
- +-.....+.+.+.+.+.++.|-.-+ .+........|+.++|++..+
T Consensus 311 ~Lf~~~~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~~~ 361 (524)
T d2ar0a1 311 VLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 361 (524)
T ss_dssp HHHCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCSSC
T ss_pred HhhhhhhhHHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECCCCCC
Confidence 1 2222344555554556666554333 233345566888888876543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=5.1e-05 Score=64.60 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=82.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.++||-||.|.|.....+++..+ .+|+++|+ +.+++.+++....+.... ...++.+..-|... -+.....+|
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~--~d~rv~v~~~Da~~----~l~~~~~~y 163 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF--DDPRAEIVIANGAE----YVRKFKNEF 163 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG--GCTTEEEEESCHHH----HGGGCSSCE
T ss_pred CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc--cCCCcEEEhhhHHH----HHhcCCCCC
Confidence 67999999999998888765443 68999999 999999998776543221 24567766533322 223335689
Q ss_pred cEEEEc--CccCCCC---CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc--ccHHHHHHHHhhcCceEEE
Q 023457 184 DVILAS--DVVYHDH---LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW--KKDSVFFKKAKKLFDVETI 250 (282)
Q Consensus 184 D~Ii~s--d~ly~~~---~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~--~~~~~f~~~~~~~f~ve~v 250 (282)
|+||+- |...... .-..+++.+++.|+++ +++++-...... .......+.++.-|.....
T Consensus 164 DvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-------Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~ 230 (295)
T d1inla_ 164 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-------GVFSAETEDPFYDIGWFKLAYRRISKVFPITRV 230 (295)
T ss_dssp EEEEEEC----------CCSHHHHHHHHHHEEEE-------EEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEE
T ss_pred CEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-------cEEEEecCChhhhhHHHHHHHHHHHhhcceeEE
Confidence 999962 2211111 2468899999999998 433332222211 1234555666667755443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=0.0007 Score=53.12 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=89.8
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
+|+.-|.+...++.. ..++.+||||||+.|..+..++...+ ..|+++|+ +- .
T Consensus 5 RaafKL~EI~~k~~l------------~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~-- 59 (180)
T d1ej0a_ 5 RAWFKLDEIQQSDKL------------FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------D-- 59 (180)
T ss_dssp HHHHHHHHHHHHHCC------------CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------C--
T ss_pred HHHHHHHHHHHHhCc------------cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------c--
Confidence 467777777666541 24588999999999999999886654 68999998 41 0
Q ss_pred ccccCCCcEEEEEEEeCCCCccc---hhhcCCCccEEEEcCccCCCC-----------CHHHHHHHHHHHHhcCCCCCCC
Q 023457 153 LISLRGGSVHVAPLRWGEAEAND---VAVVGREFDVILASDVVYHDH-----------LFDPLLVTLRLFLNSGEPEPKK 218 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~~---~~~~~~~fD~Ii~sd~ly~~~-----------~~~~ll~~l~~ll~~g~~~~~~ 218 (282)
....+.+...+..+..... ......++|+|++-....-.. .....+....++|++|
T Consensus 60 ----~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g------ 129 (180)
T d1ej0a_ 60 ----PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG------ 129 (180)
T ss_dssp ----CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE------
T ss_pred ----ccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCC------
Confidence 1224445554444311000 011246899999843322111 2445566667788888
Q ss_pred ceEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeee
Q 023457 219 KKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 219 g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~ 271 (282)
|.+++=+ .+. .....++..+...|+--.+. .|.........+|.+-+.
T Consensus 130 G~fV~K~--F~g-~~~~~l~~~l~~~F~~V~~~--KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 130 GSFVVKV--FQG-EGFDEYLREIRSLFTKVKVR--KPDSSRARSREVYIVATG 177 (180)
T ss_dssp EEEEEEE--ESS-TTHHHHHHHHHHHEEEEEEE--CCTTSCTTCCEEEEEEEE
T ss_pred CcEEEEE--ecC-ccHHHHHHHHHhhcCEEEEE--CCCCcccCCceEEEEEec
Confidence 4544422 222 34567777777777433322 333333344566766544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=7.4e-05 Score=63.31 Aligned_cols=131 Identities=14% Similarity=0.025 Sum_probs=81.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..++||-||.|.|.....+.+.. ..+|+++|+ +.+++.+++-...+.... ...++.+..-|... -+.....+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~--~d~rv~i~~~Da~~----~l~~~~~~ 151 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY--SSSKLTLHVGDGFE----FMKQNQDA 151 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--GCTTEEEEESCHHH----HHHTCSSC
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcccc--CCCCceEEEccHHH----HHhcCCCC
Confidence 35799999999999988887543 369999999 999999998766543221 24577766533221 22223568
Q ss_pred ccEEEEcCccCCCC-----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc--ccHHHHHHHHhhcCceEE
Q 023457 183 FDVILASDVVYHDH-----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW--KKDSVFFKKAKKLFDVET 249 (282)
Q Consensus 183 fD~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~--~~~~~f~~~~~~~f~ve~ 249 (282)
||+||+ |+..... .-..+++.+++.|+++ +++++-...... .........++..|..-.
T Consensus 152 yDvIi~-D~~~p~~~~~~L~t~eF~~~~~~~L~~~-------Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~ 217 (285)
T d2o07a1 152 FDVIIT-DSSDPMGPAESLFKESYYQLMKTALKED-------GVLCCQGECQWLHLDLIKEMRQFCQSLFPVVA 217 (285)
T ss_dssp EEEEEE-ECC-----------CHHHHHHHHHEEEE-------EEEEEEEECTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred CCEEEE-cCCCCCCcccccccHHHHHHHHHhcCCC-------CeEEEeccchhhhHHHHHHHHHHHHhcCCeee
Confidence 999997 4322111 1235788999999998 433333222222 123444556666786543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=0.00043 Score=58.36 Aligned_cols=146 Identities=15% Similarity=0.084 Sum_probs=88.1
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
..-.+|+..+..| ...+|.+|||+.||.|.=++.++.... ..|++.|. +.-+..++.|+...
T Consensus 86 vQD~sS~l~~~~L----------------~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~ 149 (284)
T d1sqga2 86 VQDASAQGCMTWL----------------APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 149 (284)
T ss_dssp ECCHHHHTHHHHH----------------CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT
T ss_pred ecccccccccccc----------------CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc
Confidence 4445777776666 234588999999999999988875443 68999999 88889999999887
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEc------CccCCCCC----------------HHHHHHHHHHH
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILAS------DVVYHDHL----------------FDPLLVTLRLF 208 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~s------d~ly~~~~----------------~~~ll~~l~~l 208 (282)
+.. .+.+.. .+..... ......||.|+.- .++...++ ...++....++
T Consensus 150 g~~------~~~~~~---~~~~~~~-~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~ 219 (284)
T d1sqga2 150 GMK------ATVKQG---DGRYPSQ-WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPH 219 (284)
T ss_dssp TCC------CEEEEC---CTTCTHH-HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred ccc------ceeeec---cccccch-hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHh
Confidence 641 222221 1111111 1224679999961 22322111 34566666777
Q ss_pred HhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEE
Q 023457 209 LNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETI 250 (282)
Q Consensus 209 l~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v 250 (282)
+++| |.+++..+.....+.+......+++.-+++.+
T Consensus 220 lk~g------G~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~ 255 (284)
T d1sqga2 220 LKTG------GTLVYATCSVLPEENSLQIKAFLQRTADAELC 255 (284)
T ss_dssp EEEE------EEEEEEESCCCGGGTHHHHHHHHHHCTTCEEC
T ss_pred cCCC------ceEEEeeecCchhhCHHHHHHHHHhCCCcEEe
Confidence 8888 67777666544444443333334433334433
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=6.6e-05 Score=63.34 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=56.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||+|+|.++..++.. +++|+++++ +.+++.+++....+.. ..++.+...|+...+ ...
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~-----~~~~~~i~~D~l~~~-------~~~ 86 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTD-------LPF 86 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSC-------CCC
T ss_pred CCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhcc-----ccchhhhHHHHhhhh-------hhh
Confidence 35779999999999999999855 689999999 8999999887765432 346777776665421 234
Q ss_pred ccEEEEcCcc
Q 023457 183 FDVILASDVV 192 (282)
Q Consensus 183 fD~Ii~sd~l 192 (282)
++.||++-+.
T Consensus 87 ~~~vV~NLPY 96 (278)
T d1zq9a1 87 FDTCVANLPY 96 (278)
T ss_dssp CSEEEEECCG
T ss_pred hhhhhcchHH
Confidence 5678876554
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=0.00013 Score=61.43 Aligned_cols=130 Identities=16% Similarity=0.115 Sum_probs=82.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..++||-||.|.|.....+.+..+ .+|+++|+ +.+++.+++....+.... ...++.+..-|... -+.....+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~--~d~r~~i~~~D~~~----~l~~~~~~ 148 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL--DDPRVDVQVDDGFM----HIAKSENQ 148 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT--TSTTEEEEESCSHH----HHHTCCSC
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccc--cCCCeEEEechHHH----HHhhcCCC
Confidence 367999999999999988875443 69999999 999999998776544221 24566665532211 23333578
Q ss_pred ccEEEEc--CccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec--CcccHHHHHHHHhhcCce
Q 023457 183 FDVILAS--DVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR--RWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 183 fD~Ii~s--d~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~--~~~~~~~f~~~~~~~f~v 247 (282)
||+|+.- +...... .-..+.+.+++.|+++ ++++.-.... ...........+++-|..
T Consensus 149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-------Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~ 212 (274)
T d1iy9a_ 149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-------GIFVAQTDNPWFTPELITNVQRDVKEIFPI 212 (274)
T ss_dssp EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-------EEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred CCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-------ceEEEecCCccccHHHHHHHHHhhhhhcCc
Confidence 9999973 2221111 1457899999999998 4333322211 112234556666666754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.65 E-value=1.9e-06 Score=71.84 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.++..++. .+.+|+++|+ +.+++.++.+... ..++.+..-|+.+ +......
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~-~~~~v~aIE~D~~l~~~l~~~~~~--------~~n~~ii~~D~l~-----~~~~~~~ 93 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAK-ISKQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQ-----FQFPNKQ 93 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHH-HSSEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTT-----TTCCCSS
T ss_pred CCCCeEEEECCCccHHHHHHHh-hcCceeEeeecccchhhhhhhhhh--------ccchhhhhhhhhc-----cccccce
Confidence 4577999999999999999985 4789999999 7777766554321 2355555544443 2222345
Q ss_pred ccEEEEcCccCCC
Q 023457 183 FDVILASDVVYHD 195 (282)
Q Consensus 183 fD~Ii~sd~ly~~ 195 (282)
++.|+++-+ |+.
T Consensus 94 ~~~vv~NLP-Y~I 105 (245)
T d1yuba_ 94 RYKIVGNIP-YHL 105 (245)
T ss_dssp EEEEEEECC-SSS
T ss_pred eeeEeeeee-hhh
Confidence 566666544 554
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=1.9e-05 Score=65.83 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
.++..|||||||+|.++..++ ..+++|+++|+ +.+++.++..... ..++.+...|...
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~~--------~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVG-ERLDQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMT 78 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHH-TTCSCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGG
T ss_pred CCCCEEEEECCCchHHHHHHH-ccCCceEEEEeccchhHHHHHHhhh--------ccchhHHhhhhhh
Confidence 357899999999999999998 45689999999 8888888764332 2356666655444
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.48 E-value=0.00018 Score=61.44 Aligned_cols=100 Identities=18% Similarity=0.080 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.++||-||.|.|.+...+++..+ .+|+++|+ +.+++.+++-...+.... ...++.+..-|... -+.....+|
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~--~dprv~i~i~Da~~----~l~~~~~~y 180 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--SHPKLDLFCGDGFE----FLKNHKNEF 180 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--GCTTEEEECSCHHH----HHHHCTTCE
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcccc--CCCCeEEEEchHHH----HHHhCCCCC
Confidence 56999999999999988875444 69999999 999999998765543221 24566655322111 222336789
Q ss_pred cEEEEcCccC---CCC--CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVY---HDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly---~~~--~~~~ll~~l~~ll~~g 212 (282)
|+||. |+.. ... .-..+++.+++.|+++
T Consensus 181 DvII~-D~~dp~~~~~~L~t~eFy~~~~~~L~~~ 213 (312)
T d2b2ca1 181 DVIIT-DSSDPVGPAESLFGQSYYELLRDALKED 213 (312)
T ss_dssp EEEEE-CCC-------------HHHHHHHHEEEE
T ss_pred CEEEE-cCCCCCCcchhhhhHHHHHHHHhhcCCC
Confidence 99997 3321 111 2356788999999998
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.34 E-value=0.00042 Score=58.63 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=68.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~ 181 (282)
..++||-||.|.|.....+++..+ .+|+++|+ +.+++.+++-...+.... ...++.+..-|-.. -+... ..
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~--~~~r~~i~~~Da~~----~l~~~~~~ 153 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY--EDPRVNLVIGDGVA----FLKNAAEG 153 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--GSTTEEEEESCHHH----HHHTSCTT
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccc--cCCCcEEEEccHHH----HHhhcccc
Confidence 357999999999999988875444 68999999 999999988765443221 24566665433211 12222 35
Q ss_pred CccEEEEcCccCCCC-----CHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDH-----LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g 212 (282)
+||+||. |+.-... .-..+++.+++.|+++
T Consensus 154 ~yDvIi~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~ 188 (290)
T d1xj5a_ 154 SYDAVIV-DSSDPIGPAKELFEKPFFQSVARALRPG 188 (290)
T ss_dssp CEEEEEE-CCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred CccEEEE-cCCCCCCcchhhCCHHHHHHHHHhcCCC
Confidence 8999997 4332111 1357899999999998
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.33 E-value=0.0056 Score=51.99 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=73.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+|.+|||+.||.|.=+..++.... +.+++.|. +.-+..++.|+...+. .++.+. ..+ ...+....
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~---~~d--~~~~~~~~ 183 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILF---HSS--SLHIGELN 183 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEE---SSC--GGGGGGGC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hccccc---ccc--cccccccc
Confidence 4588999999999998888875543 58999999 8888999999887663 223222 122 22333446
Q ss_pred CCccEEEEc------CccCCCC----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCccc
Q 023457 181 REFDVILAS------DVVYHDH----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKK 233 (282)
Q Consensus 181 ~~fD~Ii~s------d~ly~~~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~ 233 (282)
..||.|+.- .++...+ ....++....+++++| |.+++..+.....+.
T Consensus 184 ~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g------G~lVYsTCSl~~eEN 252 (313)
T d1ixka_ 184 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG------GILVYSTCSLEPEEN 252 (313)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE------EEEEEEESCCCGGGT
T ss_pred ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC------cEEEEeeccCChHhH
Confidence 789999961 1121111 1345667777788898 677776665444333
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0038 Score=52.53 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=55.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+|.+|||+.||.|.=+..+|... ...|++.|. +.-+..+++|+...+. .++.+..-|...... .....
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~~~--~~~~~ 164 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSP--SDPRY 164 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCT--TCGGG
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhhcc--ccccc
Confidence 458899999999999888887554 368999999 8889999999998774 345555544433111 11113
Q ss_pred CCccEEEE
Q 023457 181 REFDVILA 188 (282)
Q Consensus 181 ~~fD~Ii~ 188 (282)
..||.|+.
T Consensus 165 ~~fD~VL~ 172 (293)
T d2b9ea1 165 HEVHYILL 172 (293)
T ss_dssp TTEEEEEE
T ss_pred ceeeEEee
Confidence 57999996
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.70 E-value=0.0025 Score=51.90 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=56.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+.++|||||++.|.-++.++..+ .++|+++|+ +....... + ...++.+...|-.+ ...+..
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~------~~~~I~~i~gDs~~--~~~~~~ 146 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----S------DMENITLHQGDCSD--LTTFEH 146 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----G------GCTTEEEEECCSSC--SGGGGG
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----c------cccceeeeeccccc--HHHHHH
Confidence 46799999999998777665332 379999998 54221110 0 13567777655443 222222
Q ss_pred c-CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 179 V-GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 179 ~-~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
. ...+|+|+. |--|.....-.-+ .+..+|++| +++++-.
T Consensus 147 l~~~~~dlIfI-D~~H~~~~v~~~~-~~~~lLk~G-------G~iIveD 186 (232)
T d2bm8a1 147 LREMAHPLIFI-DNAHANTFNIMKW-AVDHLLEEG-------DYFIIED 186 (232)
T ss_dssp GSSSCSSEEEE-ESSCSSHHHHHHH-HHHHTCCTT-------CEEEECS
T ss_pred HHhcCCCEEEE-cCCcchHHHHHHH-HHhcccCcC-------CEEEEEc
Confidence 2 346788876 4334322221222 345788887 5555543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.66 E-value=0.0016 Score=53.56 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc---cCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS---LRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~---~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+|||+-||.|.-++.+| ..+++|++++. +.+..+++.++........ ....++++..-|-.+ -+.....
T Consensus 89 ~~~VlD~TaGlG~Da~vlA-~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~----~L~~~~~ 163 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLA-SVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT----ALTDITP 163 (250)
T ss_dssp CCCEEETTCTTCHHHHHHH-HHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH----HSTTCSS
T ss_pred CCEEEECCCcccHHHHHHH-hCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH----HHhccCC
Confidence 3489999999999999998 56799999999 8877777777654321100 001245555422111 1222345
Q ss_pred CccEEEEcCccCCCC
Q 023457 182 EFDVILASDVVYHDH 196 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~ 196 (282)
.||+|.. |++|...
T Consensus 164 ~~DvIYl-DPMFp~~ 177 (250)
T d2oyra1 164 RPQVVYL-DPMFPHK 177 (250)
T ss_dssp CCSEEEE-CCCCCCC
T ss_pred CCCEEEE-CCCCccc
Confidence 7999998 7777543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.57 E-value=0.0019 Score=49.76 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
..+..+|+=||+|. |+-++..|+.+++.|++.|. .+.++.++.....+. ... ..+ ...+....
T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~----------~~~---~~~--~~~l~~~~ 93 (168)
T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRV----------ELL---YSN--SAEIETAV 93 (168)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGS----------EEE---ECC--HHHHHHHH
T ss_pred CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccc----------eee---hhh--hhhHHHhh
Confidence 34678999999996 99999999999999999999 888887766543321 111 111 22233334
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
...|+||.+-.+-.......+-+.+.+.++||
T Consensus 94 ~~aDivI~aalipG~~aP~lIt~~mv~~Mk~G 125 (168)
T d1pjca1 94 AEADLLIGAVLVPGRRAPILVPASLVEQMRTG 125 (168)
T ss_dssp HTCSEEEECCCCTTSSCCCCBCHHHHTTSCTT
T ss_pred ccCcEEEEeeecCCcccCeeecHHHHhhcCCC
Confidence 57899999866655555555556666777887
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.45 E-value=0.04 Score=44.74 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=37.8
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL 136 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~ 136 (282)
.+=+++.-|.+..++.. ..++.+|+|||||.|..+..++.... ..|.++|+
T Consensus 47 ~~SR~~~Kl~~~~~~~~-------------~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i 98 (257)
T d2p41a1 47 AVSRGSAKLRWFVERNL-------------VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK 98 (257)
T ss_dssp CSSTHHHHHHHHHHTTS-------------SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred CcchHHHHHHHHHHhcC-------------ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence 44578888887776643 23466899999999999999984432 46777777
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.44 E-value=0.0027 Score=49.66 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=68.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch-h-hcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-A-VVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-~-~~~ 180 (282)
.+|..++|..+|.|-.+..+... ..+|+++|. +.++..++.. ...++.+.+..+.+ .... . ...
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~----------~~~~~~~~~~~f~~--~~~~l~~~~~ 83 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL----------HLPGLTVVQGNFRH--LKRHLAALGV 83 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----------CCTTEEEEESCGGG--HHHHHHHTTC
T ss_pred CCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc----------cccceeEeehHHHH--HHHHHHHcCC
Confidence 46889999999999999888754 579999999 9998877652 13356666544443 1111 1 113
Q ss_pred CCccEEEEcCccCCC----------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 181 REFDVILASDVVYHD----------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~----------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
..+|.|+.- .=+.. ......+.....+++++ |.++++..+
T Consensus 84 ~~vdgIl~D-LGvSs~qld~~~re~~~~~~~L~~~~~~lk~g------g~~~ii~fh 133 (182)
T d1wg8a2 84 ERVDGILAD-LGVSSFHLDDPSDELNALKEFLEQAAEVLAPG------GRLVVIAFH 133 (182)
T ss_dssp SCEEEEEEE-CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE------EEEEEEECS
T ss_pred CccCEEEEE-ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC------CeEEEEecc
Confidence 579999873 22211 12344677777888888 676666543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.33 E-value=0.0092 Score=45.43 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=60.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc--c----
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN--D---- 175 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~--~---- 175 (282)
.+|.+||=+|||. |++.+.+++..+++|+++|. +.-++.+++. ..... +.+...... .
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~-----------ga~~~---~~~~~~~~~~~~~~~~ 90 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC-----------GADVT---LVVDPAKEEESSIIER 90 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----------TCSEE---EECCTTTSCHHHHHHH
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc-----------CCcEE---Eeccccccccchhhhh
Confidence 4578999999984 88888888888899999999 8777777652 11111 112221111 1
Q ss_pred hh-hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 176 VA-VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 176 ~~-~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+. .....+|+||-+ .--+..+....++++++ |+++++.
T Consensus 91 ~~~~~g~g~D~vid~------~g~~~~~~~a~~~~~~~------G~iv~~G 129 (170)
T d1e3ja2 91 IRSAIGDLPNVTIDC------SGNEKCITIGINITRTG------GTLMLVG 129 (170)
T ss_dssp HHHHSSSCCSEEEEC------SCCHHHHHHHHHHSCTT------CEEEECS
T ss_pred hhcccccCCceeeec------CCChHHHHHHHHHHhcC------CceEEEe
Confidence 00 113568988853 12345677777889998 6665554
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.023 Score=43.26 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=60.9
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--- 177 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--- 177 (282)
.+|.+||=+|||. |++...+++..++ +|+++|. +.-++.+++. + ... +. .....+..+..
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----G-------a~~-~~--~~~~~~~~~~~~~~ 90 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----G-------ADL-VL--QISKESPQEIARKV 90 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T-------CSE-EE--ECSSCCHHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----C-------Ccc-cc--cccccccccccccc
Confidence 4578999999986 8888888877776 8999999 8877777652 1 111 11 11111111110
Q ss_pred --hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 178 --VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 178 --~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
.....+|+|+-+ .-.+..++...++++++ |+++++..
T Consensus 91 ~~~~g~g~Dvvid~------~G~~~~~~~a~~~~~~g------G~iv~~G~ 129 (171)
T d1pl8a2 91 EGQLGCKPEVTIEC------TGAEASIQAGIYATRSG------GTLVLVGL 129 (171)
T ss_dssp HHHHTSCCSEEEEC------SCCHHHHHHHHHHSCTT------CEEEECSC
T ss_pred cccCCCCceEEEec------cCCchhHHHHHHHhcCC------CEEEEEec
Confidence 124578998864 22355677888899998 66666543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.38 E-value=0.0088 Score=46.20 Aligned_cols=42 Identities=31% Similarity=0.359 Sum_probs=34.8
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|||. |+..+.+|+..++ +|+++|. +.-++.+++
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence 4588999999985 8888888888775 8999999 887777765
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.013 Score=49.75 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=36.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~ 147 (282)
.+.+|||||+|.|.++..+.... +.+|++++. +..++.++...
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~ 87 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 87 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence 46789999999999999998664 469999999 88888887654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.96 E-value=0.015 Score=44.50 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chh-h
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVA-V 178 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~-~ 178 (282)
.+|.+||=+|||. |..++.+++..+. .|+++|. +.-++.+++. + .. .+ ++..+.+.. .+. .
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----G------a~--~~--i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G------AT--HV--INSKTQDPVAAIKEI 92 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T------CS--EE--EETTTSCHHHHHHHH
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----C------Ce--EE--EeCCCcCHHHHHHHH
Confidence 4688999999985 7777777766664 6778898 7777777652 1 01 11 222221111 111 1
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
..+.||+||-+ .-.+..++...++++++ |+++++.
T Consensus 93 t~gg~D~vid~------~G~~~~~~~~~~~~~~~------G~i~~~G 127 (174)
T d1f8fa2 93 TDGGVNFALES------TGSPEILKQGVDALGIL------GKIAVVG 127 (174)
T ss_dssp TTSCEEEEEEC------SCCHHHHHHHHHTEEEE------EEEEECC
T ss_pred cCCCCcEEEEc------CCcHHHHHHHHhcccCc------eEEEEEe
Confidence 24579998853 22356677778889998 6665543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.79 E-value=0.021 Score=43.16 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=35.1
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|||. |+..+.+++..+.+|+++|. +.-++.+++
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence 4578899899985 88888888888899999999 777777764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.51 E-value=0.0058 Score=47.58 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCC-------CcEEEEEEEeCCCCcc
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRG-------GSVHVAPLRWGEAEAN 174 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~-------~~v~~~~ld~~~~~~~ 174 (282)
.+..+|+=||+|+ |+.++..|..+++.|++.|. +..++.++.....+-....... .......-+|.....+
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 4567999999997 88899999889999999999 8888877653221110000000 0000000011111111
Q ss_pred chhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 175 DVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+.......|+||.+-.+-......-+-+.+-+.++||
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~G 144 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPG 144 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTT
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCC
Confidence 11112347899999877665554444555666677887
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.12 Score=39.07 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCCCcEEEeCC-C-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chh--
Q 023457 104 GCQLNILELGS-G-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVA-- 177 (282)
Q Consensus 104 ~~g~~VLELGc-G-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~-- 177 (282)
.+|.+||=.|+ | .|...+.+|+..+++|++++. ++-++.+++ .+ .+. .++..+.+.. .+.
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~G------a~~----vi~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NG------AHE----VFNHREVNYIDKIKKY 92 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TT------CSE----EEETTSTTHHHHHHHH
T ss_pred CCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cC------ccc----ccccccccHHHHhhhh
Confidence 46889999997 4 588888889888999999998 766666654 22 111 1233321111 111
Q ss_pred hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 178 VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
.....+|+|+-+ .-...+....++++++ |+++.+
T Consensus 93 t~~~g~d~v~d~-------~g~~~~~~~~~~l~~~------G~iv~~ 126 (174)
T d1yb5a2 93 VGEKGIDIIIEM-------LANVNLSKDLSLLSHG------GRVIVV 126 (174)
T ss_dssp HCTTCEEEEEES-------CHHHHHHHHHHHEEEE------EEEEEC
T ss_pred hccCCceEEeec-------ccHHHHHHHHhccCCC------CEEEEE
Confidence 114579999964 2235677777889998 565554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.016 Score=44.00 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=56.5
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+|.+||=+|||. |++.+.+|+..+++++++|. ++-++.+++. + .+. .++..+ .........
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----G------ad~----~i~~~~--~~~~~~~~~ 92 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----G------ADE----VVNSRN--ADEMAAHLK 92 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----T------CSE----EEETTC--HHHHHTTTT
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----C------CcE----EEECch--hhHHHHhcC
Confidence 4588999999985 88888888888889999998 6656665541 1 111 122222 111222245
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
.+|+++-+ .-.... +.....+++++ |+++++
T Consensus 93 ~~D~vid~--~g~~~~----~~~~~~~l~~~------G~iv~~ 123 (168)
T d1uufa2 93 SFDFILNT--VAAPHN----LDDFTTLLKRD------GTMTLV 123 (168)
T ss_dssp CEEEEEEC--CSSCCC----HHHHHTTEEEE------EEEEEC
T ss_pred CCceeeee--eecchh----HHHHHHHHhcC------CEEEEe
Confidence 79988854 222222 34445688887 565554
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.10 E-value=0.34 Score=40.03 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=35.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHH
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~ 148 (282)
...+.+||||-||.|..++.+- ..|. .|.++|+ +.+++..+.|..
T Consensus 8 ~~~~lrv~~lFsG~Gg~~~gl~-~aG~~~v~a~e~d~~a~~~~~~N~~ 54 (327)
T d2c7pa1 8 QLTGLRFIDLFAGLGGFRLALE-SCGAECVYSNEWDKYAQEVYEMNFG 54 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHHH-HTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred cCCCCeEEEECccccHHHHHHH-HCCCeEEEEEeCCHHHHHHHHHHCC
Confidence 3468899999999999998875 4444 5678999 888888888763
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.98 E-value=0.07 Score=42.63 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=39.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
.+|..|||--||+|..++++. .++.+.+++|+ ++.++.+++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHc
Confidence 458899999999999998875 78899999999 999999988765
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.93 E-value=0.047 Score=46.93 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=28.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC--------CEEEEEehHhHHHHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAILG--------AKVTVTDLPHVLTNLQFN 146 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~--------~~V~~tD~~~~l~~~~~n 146 (282)
..+|+|+|+|.|.+..-+...+. ..++.++....+...+++
T Consensus 80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~ 128 (365)
T d1zkda1 80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT 128 (365)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence 45899999999999876654332 368899994444444443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.90 E-value=0.034 Score=42.61 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=34.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|||. |+.++.+|+..++ +|+++|. +.-++.+++
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence 4588899999986 8888888877775 7999999 776777754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.87 E-value=0.077 Score=40.51 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc--chh-
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN--DVA- 177 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~--~~~- 177 (282)
.+|.+||=+|||. |+.++.+++..++ .|+++|. +.-++.+++. + .. .+ ++....+.. ...
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----G-------a~-~~--i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----G-------AT-DC--LNPRELDKPVQDVIT 92 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T-------CS-EE--ECGGGCSSCHHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----C-------CC-cc--cCCccchhhhhhhHh
Confidence 4688999999996 9999999988775 7999999 7766666652 1 11 11 111111100 000
Q ss_pred -hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 178 -VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 178 -~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.....+|++|-+ .-.+..+....+.++++
T Consensus 93 ~~~~~G~d~vie~------~G~~~~~~~a~~~~~~g 122 (174)
T d1e3ia2 93 ELTAGGVDYSLDC------AGTAQTLKAAVDCTVLG 122 (174)
T ss_dssp HHHTSCBSEEEES------SCCHHHHHHHHHTBCTT
T ss_pred hhhcCCCcEEEEe------cccchHHHHHHHHhhcC
Confidence 124678998853 23455677777788775
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.77 E-value=0.027 Score=42.77 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||-+||| .|++.+.+|+..+++|+++|. ++-++.+++
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK 69 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence 458899999998 588888888888999999999 777777765
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=93.09 E-value=1.2 Score=36.13 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=45.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
++||||-||.|-+++.+-..+-..|.++|+ +.+.+..+.|.. . .+...|..+..... ....|+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----------~--~~~~~Di~~~~~~~----~~~~dl 64 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----------A--KLIKGDISKISSDE----FPKCDG 64 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----------S--EEEESCTTTSCGGG----SCCCSE
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----------C--CCccCChhhCCHhH----cccccE
Confidence 379999999999988875443345669999 888877777632 1 12223333322222 346899
Q ss_pred EEEcCccC
Q 023457 186 ILASDVVY 193 (282)
Q Consensus 186 Ii~sd~ly 193 (282)
|+++.+.-
T Consensus 65 l~~g~PCq 72 (324)
T d1dcta_ 65 IIGGPPCQ 72 (324)
T ss_dssp EEECCCCT
T ss_pred Eeeccccc
Confidence 99875543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.00 E-value=0.12 Score=41.74 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=40.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.+|..|||--||+|..++++. .++.+.+++|+ +..++.+++++..
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~-~lgR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAI-QEGRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHH-HHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHH
Confidence 458899999999999998885 77899999999 9999999988875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.97 E-value=0.071 Score=39.91 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=34.4
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.++.+||=.|||. |+..+.+++..+++|+++|. +.-++.+++
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence 3588999999986 88888888888899999999 777776654
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=92.73 E-value=0.23 Score=40.14 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=61.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-----------------------------------------CEEEEEeh-HhHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-----------------------------------------AKVTVTDL-PHVLTNL 143 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-----------------------------------------~~V~~tD~-~~~l~~~ 143 (282)
+..++|-=||+|.+.|.+|.... ..+++.|. +.+++.+
T Consensus 51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A 130 (249)
T d1o9ga_ 51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 130 (249)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence 45799999999999999885310 13467777 6777776
Q ss_pred ---HHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC-----CCC----HHHHHHHHHHHHh
Q 023457 144 ---QFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH-----DHL----FDPLLVTLRLFLN 210 (282)
Q Consensus 144 ---~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~-----~~~----~~~ll~~l~~ll~ 210 (282)
+.|+...++ ...+.+...|+.+............+++||++.+.-. ... +..+...+.+.+.
T Consensus 131 ~~~r~n~~~Agl-----~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 131 RRLRERLTAEGG-----ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHTTS-----SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC-----CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence 457766664 4567777777654221111112456799999766321 112 4455555666663
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.18 E-value=0.096 Score=43.13 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=39.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.+|..|||--||+|..++++. .++.+.+++|+ ++.++.+++++..
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~-~lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred cCCCEEEecCCCCcHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHHHh
Confidence 468899999999999999885 77899999999 8999998876654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.82 E-value=0.11 Score=40.43 Aligned_cols=102 Identities=22% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chhh-
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~~- 178 (282)
.+|.+||-+|||. |+....+|+..+ .+|+++|. +.-++.+++. + .. .+ .+-...+.. ....
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G-------a~-~~--~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G-------FE-IA--DLSLDTPLHEQIAAL 89 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T-------CE-EE--ETTSSSCHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c-------cc-EE--EeCCCcCHHHHHHHH
Confidence 4588999999986 777777776655 58999999 8878877652 1 11 11 111110000 1111
Q ss_pred -cCCCccEEEEcCccC---------CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 179 -VGREFDVILASDVVY---------HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 179 -~~~~fD~Ii~sd~ly---------~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
....+|+++-+--.. ........++...++++++ |+++++-
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g------G~v~~~G 140 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA------GKIGIPG 140 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE------EEEEECS
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC------CEEEEee
Confidence 134689998432111 1122456788888999998 6666553
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.99 E-value=0.13 Score=38.78 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-h-
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-V- 178 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~- 178 (282)
.+|.+||=+|||. |...+.+++..+ ..|+++|. ++-++.+++. + .. . .++..+....... .
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----g-------a~-~--~i~~~~~~~~~~~~~~ 96 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----G-------AD-H--VVDARRDPVKQVMELT 96 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----T-------CS-E--EEETTSCHHHHHHHHT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----c-------cc-e--eecCcccHHHHHHHhh
Confidence 4578999999985 777777776655 58899999 7766766642 1 11 1 1222221111111 1
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
....+|+|+-+ .--...++...++++++ |+++++
T Consensus 97 ~~~g~d~vid~------~g~~~~~~~a~~~l~~~------G~iv~~ 130 (172)
T d1h2ba2 97 RGRGVNVAMDF------VGSQATVDYTPYLLGRM------GRLIIV 130 (172)
T ss_dssp TTCCEEEEEES------SCCHHHHHHGGGGEEEE------EEEEEC
T ss_pred CCCCceEEEEe------cCcchHHHHHHHHHhCC------CEEEEE
Confidence 13468988853 12334567777788888 565554
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.84 E-value=1 Score=36.92 Aligned_cols=127 Identities=15% Similarity=0.137 Sum_probs=65.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..+|+||-||.|..++.+-..+- .-|.++|+ +.+++..+.|... ..+..-|..+....+++ ...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~-----------~~~~~~di~~~~~~~~~--~~~ 68 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFD--RLS 68 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHH--HHC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC-----------CCcccCchhhCCHhHcC--CCC
Confidence 35899999999998877743322 23679999 8888887776421 11111122221111222 236
Q ss_pred ccEEEEcCccCCCC----------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCccc---HHHHHHHHhh-cCceE
Q 023457 183 FDVILASDVVYHDH----------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKK---DSVFFKKAKK-LFDVE 248 (282)
Q Consensus 183 fD~Ii~sd~ly~~~----------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~---~~~f~~~~~~-~f~ve 248 (282)
+|+++++.+.-..+ ....|+-.+.++++.-.. +.. +|++--...... ...+...+++ ||.+.
T Consensus 69 ~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~---kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~ 144 (343)
T d1g55a_ 69 FDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQK---LPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp CSEEEECCC------------------CHHHHHHHHGGGCSS---CCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEE
T ss_pred ccEEEeecccccccccccccccccccccccchhhhhHhhhcC---CCc-eeeeeccCCcccchhhHHHHhhhhccccccc
Confidence 89999876643211 122344455555532100 013 455555554433 4445555543 77776
Q ss_pred E
Q 023457 249 T 249 (282)
Q Consensus 249 ~ 249 (282)
.
T Consensus 145 ~ 145 (343)
T d1g55a_ 145 E 145 (343)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=1 Score=35.95 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=54.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
.++||++|=.|++.|+ |..+|+. .|++|+++|. ++-++.+.+.+...+. ..++.....|..+ .++...
T Consensus 7 ~lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-----~~~~~~~~~Dls~--~~~v~~ 78 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----PGTLIPYRCDLSN--EEDILS 78 (257)
T ss_dssp GGTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEEECCTTC--HHHHHH
T ss_pred CCCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEEccCCC--HHHHHH
Confidence 4679999999998766 4444433 3689999999 7777777776665442 3466666777666 332211
Q ss_pred -------cCCCccEEEEcCcc
Q 023457 179 -------VGREFDVILASDVV 192 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~l 192 (282)
..+..|++|.+--.
T Consensus 79 ~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 79 MFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp HHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHhcCCCCEEEecccc
Confidence 13578999976444
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.15 E-value=0.57 Score=35.70 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=49.9
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHH---HhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAA---ILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~---~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
.+.+|++||=.|++.|. |..+++ ..+++|++++. .+-++.+...+..+. .+.+...|..+ .....
T Consensus 19 ~~l~gK~vlItGasgGI-G~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~d~~~--~~~~~ 87 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPV-GMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------KVNVTAAETAD--DASRA 87 (191)
T ss_dssp SCCTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------TCCCEEEECCS--HHHHH
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc--------chhhhhhhccc--HHHHH
Confidence 35689999999987654 333332 34689999999 777777766665543 22334445444 33343
Q ss_pred hcCCCccEEEEcCc
Q 023457 178 VVGREFDVILASDV 191 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ 191 (282)
..-...|++|.+-.
T Consensus 88 ~~~~~iDilin~Ag 101 (191)
T d1luaa1 88 EAVKGAHFVFTAGA 101 (191)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhcCcCeeeecCc
Confidence 34567899987643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.81 E-value=0.22 Score=37.79 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQFN 146 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~n 146 (282)
.+|.+||=+|||. |+.++.+++..+ ++|+++|. ++-++.+++.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 4688999999985 888888887776 68999999 8888887763
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.63 E-value=0.97 Score=35.99 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=55.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.||++|=-|++.|+ |..+|+.+ +++|+++|. .+-++.+...+.... ...++.....|..+ ..+...
T Consensus 2 ~GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dv~~--~~~v~~~~ 73 (254)
T d2gdza1 2 NGKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-----EPQKTLFIQCDVAD--QQQLRDTF 73 (254)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-----CGGGEEEEECCTTS--HHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-----CCCcEEEEEeecCC--HHHHHHHH
Confidence 48899999987665 55555433 689999999 777766665554322 13456677777666 322211
Q ss_pred -----cCCCccEEEEcCccCCCCCHHH
Q 023457 179 -----VGREFDVILASDVVYHDHLFDP 200 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ly~~~~~~~ 200 (282)
..++.|++|.+-.+.....++.
T Consensus 74 ~~~~~~~G~iDilVnnAg~~~~~~~~~ 100 (254)
T d2gdza1 74 RKVVDHFGRLDILVNNAGVNNEKNWEK 100 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCCCSSSHHH
T ss_pred HHHHHHcCCcCeecccccccccccchh
Confidence 1357999998766666655443
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.17 E-value=2.6 Score=33.52 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=49.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch---
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV--- 176 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~--- 176 (282)
.+|+++|=-|++.|+ |..+|+. .|++|++++. .+-++.+...+.... ...+.....+..+ ....
T Consensus 12 L~GK~alITGassGI-G~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~------~~~~~~~~~d~~~--~~~~~~~ 82 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGI-GREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------AASAHYIAGTMED--MTFAEQF 82 (269)
T ss_dssp GTTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------CSEEEEEECCTTC--HHHHHHH
T ss_pred cCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh------cccchhhhhhhhh--HHHHHHH
Confidence 579999999998875 4444433 3689999999 877777766554332 2344444433332 1111
Q ss_pred ----hhcCCCccEEEEcCccC
Q 023457 177 ----AVVGREFDVILASDVVY 193 (282)
Q Consensus 177 ----~~~~~~fD~Ii~sd~ly 193 (282)
....+..|+++.+-..+
T Consensus 83 ~~~~~~~~g~~~~li~nag~~ 103 (269)
T d1xu9a_ 83 VAQAGKLMGGLDMLILNHITN 103 (269)
T ss_dssp HHHHHHHHTSCSEEEECCCCC
T ss_pred HHHHHHHhCCccccccccccc
Confidence 11135688888765544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.68 E-value=4.4 Score=31.84 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=49.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+.+|+++|=-|++.|+ |..+|+. .+++|+++|. .+-++.+.+.+.... ..++.....|..+ ..+...
T Consensus 2 ~l~gK~~lITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~------g~~~~~~~~Dv~~--~~~v~~ 72 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGL-GFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY------GVETMAFRCDVSN--YEEVKK 72 (251)
T ss_dssp CCTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------CCCEEEEECCTTC--HHHHHH
T ss_pred CCCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh------CCcEEEEEccCCC--HHHHHH
Confidence 3579999999988765 4444433 3689999999 666655554443322 2345566666655 222211
Q ss_pred -------cCCCccEEEEcCcc
Q 023457 179 -------VGREFDVILASDVV 192 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~l 192 (282)
..++.|++|.+--+
T Consensus 73 ~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 73 LLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 13578999976443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.82 E-value=1.7 Score=34.47 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=54.6
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
+..++|.+|=-|++.| +|..+|+.+ +++|+++|. ++.++.+.+.+...+ .++.....|..+ ..+..
T Consensus 6 f~lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------~~~~~~~~Dvt~--~~~v~ 75 (251)
T d2c07a1 6 YCGENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------YESSGYAGDVSK--KEEIS 75 (251)
T ss_dssp CCCSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------CCEEEEECCTTC--HHHHH
T ss_pred cCCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEccCCC--HHHHH
Confidence 4567899999998766 566666554 579999999 777777777776533 356666666665 22221
Q ss_pred -------hcCCCccEEEEcCccC
Q 023457 178 -------VVGREFDVILASDVVY 193 (282)
Q Consensus 178 -------~~~~~fD~Ii~sd~ly 193 (282)
...+..|++|.+-.+.
T Consensus 76 ~~~~~~~~~~g~iDilvnnag~~ 98 (251)
T d2c07a1 76 EVINKILTEHKNVDILVNNAGIT 98 (251)
T ss_dssp HHHHHHHHHCSCCCEEEECCCCC
T ss_pred HHHHHHHHhcCCceeeeeccccc
Confidence 1146899998764443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.57 E-value=0.37 Score=36.34 Aligned_cols=42 Identities=10% Similarity=0.103 Sum_probs=34.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|||. |+.++.+++..+ .+|+++|. +.-++.+++
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 5688999999985 888888887776 58999999 877777765
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=85.93 E-value=0.9 Score=39.02 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=41.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
..++..++|+||=.|..+..++.... .+|++.+. +...+.+++|+..|..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 35677999999999998877664432 58999999 9999999999988753
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.90 E-value=0.93 Score=36.60 Aligned_cols=80 Identities=20% Similarity=0.202 Sum_probs=53.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
++||++|=-|++.|+ |..+|+. .+++|+++|. ++-++.+.+.+...+. ...++.....|..+ ......
T Consensus 2 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~----~~~~~~~~~~Dv~~--~~~v~~~ 74 (274)
T d1xhla_ 2 FSGKSVIITGSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV----PAEKINAVVADVTE--ASGQDDI 74 (274)
T ss_dssp CTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----CGGGEEEEECCTTS--HHHHHHH
T ss_pred CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEEeeCCC--HHHHHHH
Confidence 468999999988765 4444433 3689999999 7778888777776542 13357777777666 322211
Q ss_pred ------cCCCccEEEEcC
Q 023457 179 ------VGREFDVILASD 190 (282)
Q Consensus 179 ------~~~~fD~Ii~sd 190 (282)
.-++.|+++.+-
T Consensus 75 ~~~~~~~~G~iDilVnnA 92 (274)
T d1xhla_ 75 INTTLAKFGKIDILVNNA 92 (274)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHcCCceEEEeec
Confidence 125789999763
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.76 E-value=1.2 Score=33.13 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=53.3
Q ss_pred CCCCcEEEeCC-C-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCc-cchhh-
Q 023457 104 GCQLNILELGS-G-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEA-NDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGc-G-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~-~~~~~- 178 (282)
.+|.+||=.|+ | .|..++.+|+..+++|++++. ++-.+.+++ .+. .. .++..+.+. ..+..
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga------~~----vi~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV------EY----VGDSRSVDFADEILEL 89 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC------SE----EEETTCSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccc------cc----cccCCccCHHHHHHHH
Confidence 46889999874 3 588888888888999999887 665666653 221 11 123333111 11111
Q ss_pred -cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 -VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 -~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
....||+|+-+ +- ...++.+.++++++
T Consensus 90 t~~~g~d~v~d~--~g-----~~~~~~~~~~l~~~ 117 (183)
T d1pqwa_ 90 TDGYGVDVVLNS--LA-----GEAIQRGVQILAPG 117 (183)
T ss_dssp TTTCCEEEEEEC--CC-----THHHHHHHHTEEEE
T ss_pred hCCCCEEEEEec--cc-----chHHHHHHHHhcCC
Confidence 13579999963 22 23456666888887
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.86 E-value=5.7 Score=31.41 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=51.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh--HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL--PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~--~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
..+||++|=-|++.|+ |..+|+. .+++|+++|. .+.++.+.+.+..++ .++.+...|..+ ..+..
T Consensus 15 sL~gK~~lITGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~D~~~--~~~v~ 84 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------SDAACVKANVGV--VEDIV 84 (272)
T ss_dssp CCTTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTC--HHHHH
T ss_pred CCCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC-------CceeeEeCCCCC--HHHHH
Confidence 4679999999997765 4444433 3689999997 456666666665543 356666666655 22221
Q ss_pred -------hcCCCccEEEEcCccC
Q 023457 178 -------VVGREFDVILASDVVY 193 (282)
Q Consensus 178 -------~~~~~fD~Ii~sd~ly 193 (282)
...+..|+++.+-...
T Consensus 85 ~~~~~~~~~~g~idilV~nag~~ 107 (272)
T d1g0oa_ 85 RMFEEAVKIFGKLDIVCSNSGVV 107 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHhCCCCccccccccc
Confidence 1135789998764433
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.52 E-value=0.69 Score=34.79 Aligned_cols=88 Identities=14% Similarity=0.058 Sum_probs=55.1
Q ss_pred CCCCcEEEeCCCC--CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-ch-h-
Q 023457 104 GCQLNILELGSGT--GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DV-A- 177 (282)
Q Consensus 104 ~~g~~VLELGcGt--G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~-~- 177 (282)
.+|.+||=.|+|. |...+.+|+..+++|++++. ++-.+.++.. + .. .+ ++..+.... .. .
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----G-------a~-~v--i~~~~~~~~~~~~~~ 93 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----G-------FD-AA--FNYKTVNSLEEALKK 93 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T-------CS-EE--EETTSCSCHHHHHHH
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----h-------hh-hh--cccccccHHHHHHHH
Confidence 5688999888854 77788888888999999998 7666666542 1 11 11 122221111 11 1
Q ss_pred hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 178 VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.....+|+|+-+ + -...++...++++++
T Consensus 94 ~~~~Gvd~v~D~--v-----G~~~~~~~~~~l~~~ 121 (182)
T d1v3va2 94 ASPDGYDCYFDN--V-----GGEFLNTVLSQMKDF 121 (182)
T ss_dssp HCTTCEEEEEES--S-----CHHHHHHHGGGEEEE
T ss_pred hhcCCCceeEEe--c-----CchhhhhhhhhccCC
Confidence 124569998853 2 135677888899988
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.16 E-value=1.8 Score=34.40 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=51.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
.+||++|=-|++.|+ |..+|+. .|++|+++|. ++.++.+.+.+...+ .++.....|..+ ..+...
T Consensus 9 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------~~~~~~~~Dvs~--~~~~~~~ 78 (255)
T d1fmca_ 9 LDGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------GQAFACRCDITS--EQELSAL 78 (255)
T ss_dssp CTTCEEEETTTTSHH-HHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTC--HHHHHHH
T ss_pred CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEccCCC--HHHHHHH
Confidence 579999988877655 4444433 3689999999 777777777666533 355666666655 222211
Q ss_pred ------cCCCccEEEEcCccC
Q 023457 179 ------VGREFDVILASDVVY 193 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~ly 193 (282)
.-+..|++|.+--+.
T Consensus 79 ~~~~~~~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 79 ADFAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEeeeCCcCC
Confidence 125789998764433
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=83.73 E-value=1.7 Score=32.14 Aligned_cols=43 Identities=23% Similarity=0.147 Sum_probs=27.3
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
..++++||=||||- +...+.++...+.+|+.+.. .+-.+.+.+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~ 59 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK 59 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHH
Confidence 45689999999974 43333333455678888887 544444433
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.12 E-value=0.47 Score=35.97 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=33.2
Q ss_pred CCCCcEEEeCCC--CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSG--TGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcG--tG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=-|++ .|..++.+|+..+++|++|-. ++-.+.++.
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~ 74 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV 74 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh
Confidence 357899999864 577888889888999999988 666666654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=83.12 E-value=1.3 Score=35.51 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=49.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
..+||++|=-|++.|+ |..+|+. .+++|+++|. ++-++.+.+.+.. ...+.+...|..+ .++...
T Consensus 3 rL~gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~--------~~~~~~~~~Dv~~--~~~v~~ 71 (268)
T d2bgka1 3 RLQDKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--------PDVISFVHCDVTK--DEDVRN 71 (268)
T ss_dssp TTTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------TTTEEEEECCTTC--HHHHHH
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--------CCceEEEEccCCC--HHHHHH
Confidence 3579999999988765 4444433 3689999999 7767666655532 2346666666655 322211
Q ss_pred -------cCCCccEEEEcC
Q 023457 179 -------VGREFDVILASD 190 (282)
Q Consensus 179 -------~~~~fD~Ii~sd 190 (282)
..+..|++|.+-
T Consensus 72 ~~~~~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 72 LVDTTIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCcceecccc
Confidence 135789999653
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.76 E-value=2.2 Score=31.49 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHH
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~ 145 (282)
..+|.+||=+|||. |...+.+++..+ +.|+++|. +.-++.+++
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~ 71 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE 71 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence 35688999999974 555555555555 69999999 776777765
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=82.57 E-value=3.1 Score=33.36 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=50.5
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
..++||++|=-|++.| +|..+|+. .|++|+++|. ..-++.+.+.+.... ...+.....|..+ .....
T Consensus 21 ~~l~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~------g~~~~~~~~D~~~--~~~v~ 91 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT------GNKVHAIQCDVRD--PDMVQ 91 (294)
T ss_dssp TTTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------SSCEEEEECCTTC--HHHHH
T ss_pred CCCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc------CCceEEEEecccC--hHHHH
Confidence 4678999999998765 45545433 3689999999 766655555443221 2345555555554 22211
Q ss_pred -------hcCCCccEEEEcCcc
Q 023457 178 -------VVGREFDVILASDVV 192 (282)
Q Consensus 178 -------~~~~~fD~Ii~sd~l 192 (282)
......|+++.+-..
T Consensus 92 ~~~~~~~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 92 NTVSELIKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHHHHHHHTCSCSEEEECCCC
T ss_pred HHhhhhhhhccccchhhhhhhh
Confidence 124678998876443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.11 E-value=2.4 Score=31.27 Aligned_cols=42 Identities=21% Similarity=0.076 Sum_probs=34.3
Q ss_pred CCCCcEEEeCCC--CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSG--TGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcG--tG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=.|+| .|...+.+|+..+++|++++. ++-++.+++
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~ 71 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK 71 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence 458899999775 588888999888999999999 777777664
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=81.61 E-value=1.3 Score=32.54 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=44.1
Q ss_pred cEEEeCCCCCHHHHHHHH---HhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 108 NILELGSGTGLVGMAAAA---ILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~---~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|.=||+| ..|-.+|+ ..+.+|++.|. ++.++.+++ ++. .+. . ... .. .....
T Consensus 2 kI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~-----~~~---~---~~~-----~~-~~~~~ 58 (165)
T d2f1ka2 2 KIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQL-----VDE---A---GQD-----LS-LLQTA 58 (165)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTS-----CSE---E---ESC-----GG-GGTTC
T ss_pred EEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhc-----cce---e---eee-----cc-ccccc
Confidence 45556665 45444432 34679999999 777666543 111 000 0 011 11 12568
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+||.+-.. ...+.+++.+...++++
T Consensus 59 DiIilavp~---~~~~~vl~~l~~~l~~~ 84 (165)
T d2f1ka2 59 KIIFLCTPI---QLILPTLEKLIPHLSPT 84 (165)
T ss_dssp SEEEECSCH---HHHHHHHHHHGGGSCTT
T ss_pred ccccccCcH---hhhhhhhhhhhhhcccc
Confidence 999976432 45667777777667665
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=81.09 E-value=2.4 Score=33.66 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCCCcEEEeCCCCCHH---HHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLV---GMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~---si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
++||++|=-|++.|+- +..++ ..|++|+++|. ++-++.+...+..... ..++.....|..+ ..+...
T Consensus 2 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-----~~~~~~~~~Dvt~--~~~v~~~ 73 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEGLEASKAAVLETAP-----DAEVLTTVADVSD--EAQVEAY 73 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHCT-----TCCEEEEECCTTS--HHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhCC-----CCeEEEEeccCCC--HHHHHHH
Confidence 4688999999887652 33333 33689999999 7777777666554431 3456667777665 332211
Q ss_pred ------cCCCccEEEEcCc
Q 023457 179 ------VGREFDVILASDV 191 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~ 191 (282)
.-++.|++|.+--
T Consensus 74 ~~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 74 VTATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHhCCCCEEEECCc
Confidence 1357899987643
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.95 E-value=11 Score=29.38 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=53.9
Q ss_pred CCCCCcEEEeCCCCCHH---HHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-
Q 023457 103 NGCQLNILELGSGTGLV---GMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA- 177 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~---si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~- 177 (282)
+..|++||=-|++.|+- +..++ ..|++|+++|. .+-++.+.+.+...+ .++.....|..+ .+...
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~l~~~~~~~~~~~-------~~~~~~~~Dvs~--~~~v~~ 73 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHGLEETAAKCKGLG-------AKVHTFVVDCSN--REDIYS 73 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTC--HHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeeCCC--HHHHHH
Confidence 45699999999988763 33333 33689999999 887888777776533 356667777666 32221
Q ss_pred ------hcCCCccEEEEcCccC
Q 023457 178 ------VVGREFDVILASDVVY 193 (282)
Q Consensus 178 ------~~~~~fD~Ii~sd~ly 193 (282)
...+..|+++.+-.+.
T Consensus 74 ~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 74 SAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHcCCCceeEeecccc
Confidence 1245789988765444
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.63 E-value=2 Score=34.43 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=52.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
++||++|=-|++.|+ |..+|+. .+++|+++|. ++-++.+.+.+...+. ...++.....|..+ ......
T Consensus 3 L~gK~alVTGas~GI-G~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~~Dvs~--~~~v~~~ 75 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGI-GRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----SEKQVNSVVADVTT--EDGQDQI 75 (272)
T ss_dssp TTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----CGGGEEEEECCTTS--HHHHHHH
T ss_pred CCCCEEEEeCcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCCceEEEEccCCC--HHHHHHH
Confidence 568999999987654 3333333 3689999999 8888888777765442 13457777777765 322211
Q ss_pred ------cCCCccEEEEc
Q 023457 179 ------VGREFDVILAS 189 (282)
Q Consensus 179 ------~~~~fD~Ii~s 189 (282)
..+..|++|.+
T Consensus 76 ~~~~~~~~g~iDilvnn 92 (272)
T d1xkqa_ 76 INSTLKQFGKIDVLVNN 92 (272)
T ss_dssp HHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHhCCceEEEeC
Confidence 13578999976
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