Citrus Sinensis ID: 023499

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-

MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

ccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHcccccHHHHHHHccccccEEEEEccccc

cccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHccHHHccccccEEEEEcccccccEcHHHccHHHHHHHHcccEEEEEccccHEHHccccEEcHHHEEEEEEccHHHHHHHcccEEEEEEEEccccc

mkkdpethggppdcILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLAScqnlvprpwviddleTFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAandlpsindvtyPELIEIMSKLKDekgqlmgvdtsklliansgndlpviDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQfkcdslkigmvkhpevaqflggrlYDCVFKYNEVSS

mkkdpethggppdciLLCRLREQVLRELGFRdifkkvkdeenakaislfgdvvrlndVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVilaandlpsindvTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFkvkwskkawkkavIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

************DCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYN****

**********PPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE***

*********GPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

*****ETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE***

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		281	2.2.26 [Sep-21-2011]
Q949P3		367	Uncharacterized protein A	no	no	1.0	0.765	0.864	1e-141
Q5R5F8		773	Pantothenate kinase 4 OS=	yes	no	0.907	0.329	0.392	2e-47
Q9NVE7		773	Pantothenate kinase 4 OS=	yes	no	0.907	0.329	0.392	2e-47
Q8L5Y9		901	Pantothenate kinase 2 OS=	no	no	0.932	0.290	0.4	3e-47
Q4R4U1		773	Pantothenate kinase 4 OS=	N/A	no	0.907	0.329	0.392	8e-47
Q923S8		773	Pantothenate kinase 4 OS=	yes	no	0.907	0.329	0.388	2e-46
Q80YV4		820	Pantothenate kinase 4 OS=	no	no	0.907	0.310	0.335	7e-41

>sp\|Q949P3\|Y2734_ARATH Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1	Back alignment and function desciption

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/281 (86%), Positives = 264/281 (93%)

Query: 1   MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE 60
           +KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF  VV L+D IE
Sbjct: 87  LKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIE 146

Query: 61  DEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVK 120
           D+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLASCQNLVPRPWVIDDLE F+ K
Sbjct: 147 DDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAK 206

Query: 121 WSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIM 180
           W  K+WKKAVIFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSIND+T  EL EI+
Sbjct: 207 WINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTELTEIL 266

Query: 181 SKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIET 240
           S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADLVI+EGMGRGIET
Sbjct: 267 SQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIET 326

Query: 241 NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 281
           NLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV S
Sbjct: 327 NLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367

Arabidopsis thaliana (taxid: 3702)

>sp\|Q5R5F8\|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1	Back alignment and function description

>sp\|Q9NVE7\|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1	Back alignment and function description

>sp\|Q8L5Y9\|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2	Back alignment and function description

>sp\|Q4R4U1\|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2	Back alignment and function description

>sp\|Q923S8\|PANK4_RAT Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1	Back alignment and function description

>sp\|Q80YV4\|PANK4_MOUSE Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		281
225428330		367	PREDICTED: uncharacterized protein At2g1	1.0	0.765	0.893	1e-146
363806824		367	uncharacterized protein LOC100804454 [Gl	1.0	0.765	0.889	1e-144
297836456		367	hypothetical protein ARALYDRAFT_480618 [	1.0	0.765	0.882	1e-143
297798382		367	hypothetical protein ARALYDRAFT_491111 [	1.0	0.765	0.868	1e-142
388518505		366	unknown [Lotus japonicus]	0.996	0.765	0.864	1e-141
21554145		367	unknown [Arabidopsis thaliana]	0.992	0.760	0.870	1e-140
449454313		367	PREDICTED: uncharacterized protein At2g1	1.0	0.765	0.896	1e-140
21554574		367	unknown [Arabidopsis thaliana]	1.0	0.765	0.861	1e-140
18418688		367	uncharacterized protein [Arabidopsis tha	0.992	0.760	0.867	1e-140
55670842		367	Chain A, X-Ray Structure Of Gene Product	1.0	0.765	0.864	1e-140

>gi\|225428330\|ref\|XP_002283109.1\| PREDICTED: uncharacterized protein At2g17340 [Vitis vinifera] gi\|297744464\|emb\|CBI37726.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/281 (89%), Positives = 270/281 (96%)

Query: 1   MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE 60
           +KKDPE+HGGPPDC+LLCRLREQVLRELGFRDIFKKVKDEENAKAISLF +VV LND IE
Sbjct: 87  LKKDPESHGGPPDCVLLCRLREQVLRELGFRDIFKKVKDEENAKAISLFENVVHLNDAIE 146

Query: 61  DEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVK 120
           DE KR+E+L+RGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDL++FK+K
Sbjct: 147 DESKRLENLVRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLDSFKLK 206

Query: 121 WSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIM 180
           WS+K+WKK +IFVDNSGADIILGILPFARELLR G+QV+LAANDLPSINDVTYPELIEI+
Sbjct: 207 WSRKSWKKVIIFVDNSGADIILGILPFARELLRCGSQVVLAANDLPSINDVTYPELIEII 266

Query: 181 SKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIET 240
           +KLKDE GQL+GVDTS LLIANSGNDLPVIDLT +SQELAYLASDADLVILEGMGRGIET
Sbjct: 267 AKLKDENGQLVGVDTSNLLIANSGNDLPVIDLTRISQELAYLASDADLVILEGMGRGIET 326

Query: 241 NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 281
           NLYAQFKCDSLKIGMVKH EVAQFLGGRLYDCVFKYNEV S
Sbjct: 327 NLYAQFKCDSLKIGMVKHLEVAQFLGGRLYDCVFKYNEVLS 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|363806824\|ref\|NP_001242288.1\| uncharacterized protein LOC100804454 [Glycine max] gi\|255641170\|gb\|ACU20862.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|297836456\|ref\|XP_002886110.1\| hypothetical protein ARALYDRAFT_480618 [Arabidopsis lyrata subsp. lyrata] gi\|297331950\|gb\|EFH62369.1\| hypothetical protein ARALYDRAFT_480618 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297798382\|ref\|XP_002867075.1\| hypothetical protein ARALYDRAFT_491111 [Arabidopsis lyrata subsp. lyrata] gi\|297312911\|gb\|EFH43334.1\| hypothetical protein ARALYDRAFT_491111 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|388518505\|gb\|AFK47314.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|21554145\|gb\|AAM63225.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449454313\|ref\|XP_004144900.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus] gi\|449471318\|ref\|XP_004153274.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus] gi\|449500143\|ref\|XP_004161016.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|21554574\|gb\|AAM63619.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18418688\|ref\|NP_567984.1\| uncharacterized protein [Arabidopsis thaliana] gi\|17063179\|gb\|AAL32984.1\| unknown protein [Arabidopsis thaliana] gi\|23506025\|gb\|AAN28872.1\| At4g35360/F23E12_80 [Arabidopsis thaliana] gi\|332661103\|gb\|AEE86503.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|55670842\|pdb\|1XFI\|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 gi\|150261469\|pdb\|2Q40\|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At2g17340	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		281
TAIR\|locus:2122123		367	AT4G35360 "AT4G35360" [Arabido	0.992	0.760	0.838	4e-122
TAIR\|locus:2827544		367	AT2G17340 "AT2G17340" [Arabido	1.0	0.765	0.836	5.1e-122
TAIR\|locus:2827582		361	AT2G17320 "AT2G17320" [Arabido	0.996	0.775	0.792	3.5e-114
TAIR\|locus:2116490		901	PANK2 "pantothenate kinase 2"	0.583	0.182	0.395	1.7e-46
WB\|WBGene00006862		755	pnk-4 [Caenorhabditis elegans	0.918	0.341	0.389	1.8e-46
UNIPROTKB\|E2QXZ0		773	PANK4 "Uncharacterized protein	0.907	0.329	0.384	3.7e-45
UNIPROTKB\|I3LPY8		780	PANK4 "Uncharacterized protein	0.907	0.326	0.376	1.1e-44
UNIPROTKB\|E9PHT6		734	PANK4 "Pantothenate kinase 4"	0.907	0.347	0.384	2e-44
UNIPROTKB\|Q9NVE7		773	PANK4 "Pantothenate kinase 4"	0.907	0.329	0.384	2.8e-44
UNIPROTKB\|F1MLD0		773	PANK4 "Uncharacterized protein	0.907	0.329	0.373	7.8e-44

TAIR\|locus:2122123 AT4G35360 "AT4G35360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 234/279 (83%), Positives = 250/279 (89%)

Query:     1 MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE 60
             +KKDPE+HGGPPDCILLCR+RE +LRELGFRDIFKKVKDEENAKAISLF +VVRL+D I 
Sbjct:    87 LKKDPESHGGPPDCILLCRIRELILRELGFRDIFKKVKDEENAKAISLFPEVVRLSDAIN 146

Query:    61 DEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFXXX 120
             DEGKR+E+L+RGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLV RPWVIDDL+ F   
Sbjct:   147 DEGKRIENLVRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVSRPWVIDDLDNFQAR 206

Query:   121 XXXXXXXXXXIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIM 180
                       IFVDNSGADIILGILPFARE+LR G QV+LAAN+LPSINDVTY EL EI+
Sbjct:   207 WLKKPWKKAVIFVDNSGADIILGILPFAREMLRLGMQVVLAANELPSINDVTYIELAEIL 266

Query:   181 SKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIET 240
             SKL DE GQLMGVDTS LLIANSGNDLPVIDL  VSQE+AYL+SDADLVILEGMGRGIET
Sbjct:   267 SKLNDENGQLMGVDTSNLLIANSGNDLPVIDLARVSQEVAYLSSDADLVILEGMGRGIET 326

Query:   241 NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEV 279
             NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCV KYNEV
Sbjct:   327 NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVIKYNEV 365

GO:0004594 "pantothenate kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

TAIR\|locus:2827544 AT2G17340 "AT2G17340" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2827582 AT2G17320 "AT2G17320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2116490 PANK2 "pantothenate kinase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00006862 pnk-4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXZ0 PANK4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LPY8 PANK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PHT6 PANK4 "Pantothenate kinase 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NVE7 PANK4 "Pantothenate kinase 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MLD0 PANK4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036290001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (367 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027960001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (233 aa)	•	0.542
	GSVIVG00021938001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (174 aa)	•	0.520

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		281
pfam01937		315	pfam01937, DUF89, Protein of unknown function DUF8	6e-70
PLN02902		876	PLN02902, PLN02902, pantothenate kinase	3e-68
COG1578		285	COG1578, COG1578, Uncharacterized conserved protei	4e-07

>gnl\|CDD\|216798 pfam01937, DUF89, Protein of unknown function DUF89	Back alignment and domain information

 Score =  218 bits (557), Expect = 6e-70
 Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 14/281 (4%)

Query: 1   MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE 60
           ++ DP      P     C L  ++L   G  D FK+ K+  N KA++   ++    + +E
Sbjct: 41  LQTDPPLPPLAPWLFAECYLYRRLLEAFGNYDPFKEQKELSNEKALAAVPELAERLEELE 100

Query: 61  DEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVK 120
           DE +  + L++    GNI DLG     E   +D     +  +  + RP ++DD +    +
Sbjct: 101 DEEELFKELLKISLWGNIIDLGLLAG-EDSQED---QESELRKALERPILVDDTDALWER 156

Query: 121 WSKKAWKKAVIFVDNSGADIILGILPFARELLR--RGTQVILAANDLPSINDVTYPELIE 178
                 K+    +DN+G +++  +L  A ELLR    T+V+L    +P +NDVT  +   
Sbjct: 157 LKGSRAKRVDYVLDNAGFELVFDLL-LAEELLRSGLATKVVLHVKGIPFVNDVTMEDAEW 215

Query: 179 IMSKLKDEKGQLMGVDTS----KLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGM 234
           ++ +L D      G+D      KL+ + S    P ID   +S EL    S ADLVI +G 
Sbjct: 216 LLEQLADHSALGAGLDELLKLGKLIDSGSDFWTPGIDFWEMSPELYEELSKADLVIFKGD 275

Query: 235 G--RGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCV 273
              R +  +         L +   K   VA  L G L + +
Sbjct: 276 LNYRKLTGDRDWPPTTPILALRTAKCDVVAGLLVG-LGEKL 315

This family has no known function. Length = 315

>gnl\|CDD\|215489 PLN02902, PLN02902, pantothenate kinase	Back alignment and domain information

>gnl\|CDD\|224494 COG1578, COG1578, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		281
COG1578		285	Uncharacterized conserved protein [Function unknow	100.0
PLN02902		876	pantothenate kinase	100.0
PF01937		355	DUF89: Protein of unknown function DUF89; InterPro	100.0
KOG4584		348	consensus Uncharacterized conserved protein [Gener	100.0
KOG3870		434	consensus Uncharacterized conserved protein [Funct	100.0

>COG1578 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=2.8e-60  Score=422.96  Aligned_cols=238  Identities=24%  Similarity=0.277  Sum_probs=218.8

Q ss_pred             CCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhccchhhhh
Q 023499            9 GGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAE   88 (281)
Q Consensus         9 ~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl~~~~~~~   88 (281)
                      .+|+.  +.+++||.+++.+|+.|||++.|+++|+.|+++++.+++.+   ++..++|.+++++|+.||.||||+.+.. 
T Consensus        48 ~~~a~--~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~vr~~~---~~~~~dl~~Avk~ai~GN~iDfgv~G~~-  121 (285)
T COG1578          48 AVPAI--AGTLIHREVYKILGNEDPYKEYKRRANEIALKVLPKVRENI---EDTPEDLKTAVKLAIVGNVIDFGVLGFS-  121 (285)
T ss_pred             CCcHH--HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHhcceeeccccCC-
Confidence            35566  99999999999999999999999999999999999999843   4455789999999999999999998732 


Q ss_pred             hhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCCcc
Q 023499           89 VFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI  168 (281)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P~v  168 (281)
                           .+++++.++++++.++.+||++.+.+.|++  + +|+||+||||| |+||++ |++.+.++|.+|+++|||+||+
T Consensus       122 -----~~~lee~~~~~~~~~l~i~d~~k~~~~l~~--a-~VlYl~DNaGE-i~FD~v-lie~ik~~~~~vv~vVrg~PIl  191 (285)
T COG1578         122 -----PFDLEEEVEKLLDAELYIDDSPKLLELLKN--A-SVLYLTDNAGE-IVFDKV-LIEVIKELGKKVVVVVRGGPIL  191 (285)
T ss_pred             -----HhHHHHHHHHhhcCcccccchHHHHHHhcc--C-cEEEEecCCcc-HHHHHH-HHHHHHhcCCceEEEEcCCcee
Confidence                 378999999999999999999999999975  3 99999999999 999997 9999999999999999999999


Q ss_pred             ccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccccEEEEecCCCCCcccccccccc
Q 023499          169 NDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKC  248 (281)
Q Consensus       169 nDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~~~~~~~~~~  248 (281)
                      ||||++|+...            |+++ .++||+||++.+|..+.++|.||++.|.+||+||+|||||| |+.....++ 
T Consensus       192 nDaT~EDak~~------------~i~~-i~~vittG~~~vGi~l~d~s~Ef~~~f~~adlIIaKG~gNf-E~LsE~~~~-  256 (285)
T COG1578         192 NDATMEDAKEA------------GIDE-IAKVITTGSDIVGIWLEDVSEEFREAFESADLIIAKGQGNF-ETLSEEEDK-  256 (285)
T ss_pred             chhhHHHHHHc------------Ccch-hheeecCCCCcceeeHHhccHHHHHHhccCCEEEecCcccc-ccccccCCC-
Confidence            99999999987            8887 67999999999999999999999999999999999999999 877666654 


Q ss_pred             ccccccccCCHHHHHHhCCCccCEEEEec
Q 023499          249 DSLKIGMVKHPEVAQFLGGRLYDCVFKYN  277 (281)
Q Consensus       249 ~~~~l~~~KC~~va~~lg~~~~~~v~~~~  277 (281)
                      |+++|++|||++||+.+||++|+.|++.+
T Consensus       257 piffLL~AKC~~VAr~lgV~~G~~V~~~~  285 (285)
T COG1578         257 PIFFLLKAKCDPVARELGVPRGANVAKRN  285 (285)
T ss_pred             cEEeeecccCchHHHHhCCCCCCeeeecC
Confidence            77789999999999999999999999863

>PLN02902 pantothenate kinase	Back alignment and domain information

>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins	Back alignment and domain information

>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>KOG3870 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		281
1xfi_A		367	X-Ray Structure Of Gene Product From Arabidopsis Th		1e-135

>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 Length = 367

Back alignment and structure

Iteration: 1

Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust. Identities = 235/281 (83%), Positives = 254/281 (90%) Query: 1 MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE 60 +KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF VV L+D IE Sbjct: 87 LKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIE 146 Query: 61 DEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFXXX 120 D+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLASCQNLVPRPWVIDDLE F Sbjct: 147 DDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAK 206 Query: 121 XXXXXXXXXXIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIM 180 IFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSIND+T EL EI+ Sbjct: 207 WINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTELTEIL 266 Query: 181 SKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIET 240 S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADLVI+EGMGRGIET Sbjct: 267 SQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIET 326 Query: 241 NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 281 NLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV S Sbjct: 327 NLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367

PyMOL of 1xfi

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		281
1xfi_A		367	Unknown protein; structural genomics, protein stru	1e-109
2ffj_A		300	Conserved hypothetical protein; structural genomic	6e-57
2g8l_A		299	287AA long hypothetical protein; structural genomi	2e-56

>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A Length = 367	Back alignment and structure

 Score =  320 bits (822), Expect = e-109
 Identities = 243/281 (86%), Positives = 264/281 (93%)

Query: 1   MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE 60
           +KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF  VV L+D IE
Sbjct: 87  LKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIE 146

Query: 61  DEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVK 120
           D+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLASCQNLVPRPWVIDDLE F+ K
Sbjct: 147 DDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAK 206

Query: 121 WSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIM 180
           W  K+WKKAVIFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSIND+T  EL EI+
Sbjct: 207 WINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTELTEIL 266

Query: 181 SKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIET 240
           S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADLVI+EGMGRGIET
Sbjct: 267 SQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIET 326

Query: 241 NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 281
           NLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV S
Sbjct: 327 NLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367

PyMOL of 1xfi

>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1 Length = 300	Back alignment and structure

>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1 Length = 299	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		281
1xfi_A		367	Unknown protein; structural genomics, protein stru	100.0
2g8l_A		299	287AA long hypothetical protein; structural genomi	100.0
2ffj_A		300	Conserved hypothetical protein; structural genomic	100.0
3pt1_A		471	UPF0364 protein YMR027W; alpha/beta fold, carbohyd	100.0

>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A	Back alignment and structure

Probab=100.00  E-value=1.6e-68  Score=505.39  Aligned_cols=280  Identities=87%  Similarity=1.345  Sum_probs=244.9

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhc
Q 023499            2 KKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL   81 (281)
Q Consensus         2 ~~~~~~~~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl   81 (281)
                      +++|+.+|.|+.|++.+++++++++.+|.+|||+++|+++|..|+++++.+.+.+++++++.++|.+++|+++|||++||
T Consensus        88 ~~~p~~~g~~~~~r~~~~~~~~il~~~g~~DPf~~~K~~~n~~al~~l~~l~~~l~~~~~~~~~l~~llr~al~GN~~Dl  167 (367)
T 1xfi_A           88 KKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDL  167 (367)
T ss_dssp             HHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC--
T ss_pred             hhCccccCCcchHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccc
Confidence            46899999999999999999999999999999999999999999999999998887765566799999999999999999


Q ss_pred             cchhhhhhhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEE
Q 023499           82 GSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILA  161 (281)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~  161 (281)
                      |+..+.+.++++.+++.+.++++.+++|++||++++|+.|.+.++++|+||+||||+|+|+|+++||++|+++|++|+||
T Consensus       168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~lvdd~~~l~~~L~~~~~k~Vl~v~DNAG~Eiv~D~L~La~~Ll~~g~kVvl~  247 (367)
T 1xfi_A          168 GSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLA  247 (367)
T ss_dssp             -------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEEEE
T ss_pred             ccccccccccccCCCHHHHHHHhhccCCCcCCHHHHHHHhcccCCCEEEEEecCCCchhhccHHHHHHHHHHcCCEEEEE
Confidence            99875444443346788888887788999999999999998655689999999999889999334999999999999999


Q ss_pred             ecCCCccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccccEEEEecCCCCCccc
Q 023499          162 ANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETN  241 (281)
Q Consensus       162 vK~~P~vnDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~~~  241 (281)
                      ||++||+||||++|+.|+|+++...+..++.++++.+.|+++|+++||++|+++|++|++.|++|||||+||||||++++
T Consensus       248 vK~~P~vnDvT~~D~~~~L~~l~~~~~~L~~l~~g~l~vi~~G~~~~~~~l~~~s~el~~~l~~ADLVI~KG~gNyl~t~  327 (367)
T 1xfi_A          248 ANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETN  327 (367)
T ss_dssp             EBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTTBS
T ss_pred             ECCcCceeeCCHHHHHHHHHHHHhcchhhhhhccCcEEEEcCCCCCCCcChHHCCHHHHHHHccCCEEEEECCCCCCccc
Confidence            99999999999999999999986666667889999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccCCHHHHHHhCCCccCEEEEeccCCC
Q 023499          242 LYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS  281 (281)
Q Consensus       242 ~~~~~~~~~~~l~~~KC~~va~~lg~~~~~~v~~~~~~~~  281 (281)
                      .++.|+||+++|+++||++||+.+|+++||+||+++++++
T Consensus       328 ~~~~f~~~i~~L~~iKc~~vA~~lg~~~~~~V~~~~~~~~  367 (367)
T 1xfi_A          328 LYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS  367 (367)
T ss_dssp             TTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC--
T ss_pred             hhhhcCcchhHHHhhCcHHHHHHhCCCcCCEEEEeCCCCC
Confidence            8889999999999999999999999999999999998764

PyMOL of 1xfi

>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1	Back alignment and structure

>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1	Back alignment and structure

>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		281
d1xfia_		360	e.50.1.1 (A:) Hypothetical protein At2g17340 {Thal	1e-120
d2ffja1		282	e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Ar	1e-48
d2g8la1		284	e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Py	3e-42

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 360	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  346 bits (888), Expect = e-120
 Identities = 242/279 (86%), Positives = 263/279 (94%)

Query: 1   MKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE 60
           +KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF  VV L+D IE
Sbjct: 82  LKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIE 141

Query: 61  DEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVK 120
           D+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLASCQNLVPRPWVIDDLE F+ K
Sbjct: 142 DDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAK 201

Query: 121 WSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIM 180
           W  K+WKKAVIFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSIND+T  EL EI+
Sbjct: 202 WINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTELTEIL 261

Query: 181 SKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIET 240
           S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADLVI+EGMGRGIET
Sbjct: 262 SQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIET 321

Query: 241 NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEV 279
           NLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV
Sbjct: 322 NLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 360

PyMOL of d1xfia_

>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 282	Back information, alignment and structure

>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus horikoshii [TaxId: 53953]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		281
d1xfia_		360	Hypothetical protein At2g17340 {Thale cress (Arabi	100.0
d2ffja1		282	Hypothetical protein AF1104 {Archaeoglobus fulgidu	100.0
d2g8la1		284	Hypothetical protein PH1575 {Pyrococcus horikoshii	100.0

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.7e-65  Score=477.43  Aligned_cols=276  Identities=86%  Similarity=1.318  Sum_probs=246.1

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhc
Q 023499            2 KKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL   81 (281)
Q Consensus         2 ~~~~~~~~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl   81 (281)
                      +++|+++|++|.|.+..++.+.+++.+|..|||+++|+++|+.|+++++.+...++.+.++.+++.+++|++++||+|||
T Consensus        83 ~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~vr~aiAGNifD~  162 (360)
T d1xfia_          83 KKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDL  162 (360)
T ss_dssp             HHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC--
T ss_pred             HhCCcccCcccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhhhc
Confidence            57899999999988889999999999999999999999999999999999999998888888899999999999999999


Q ss_pred             cchhhhhhhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhch-HHHHHHHHhCCCEEEE
Q 023499           82 GSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGI-LPFARELLRRGTQVIL  160 (281)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dl-l~L~~~L~~~g~~V~~  160 (281)
                      |+....+.++.+++++.+.+++..+++|.+||++.|.+.|.+.++++|+|++||||| +|||. +|++++|+++|++|++
T Consensus       163 Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe-~Vfd~lL~~~rell~~g~~V~l  241 (360)
T d1xfia_         163 GSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGA-DIILGILPFARELLRRGAQVVL  241 (360)
T ss_dssp             -------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTH-HHHHTHHHHHHHHHHTTCEEEE
T ss_pred             ccccchhhhccccchHHHHHHHhhcCCCccccHHHHHHHHhcCCcceEEEEecCCch-HHHHHHHHHHHHHhcCCCeEEE
Confidence            998765555555689999999999999999999999999987677999999999999 65664 4568999999999999


Q ss_pred             EecCCCccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccccEEEEecCCCCCcc
Q 023499          161 AANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIET  240 (281)
Q Consensus       161 ~vK~~P~vnDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~~  240 (281)
                      +||+.|++||||++|+..++.++...++.+.|++++...|++||+..||++|+++|+||++++++|||||+|||||.+||
T Consensus       242 ~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~~~~aDLVI~KGMGr~~~t  321 (360)
T d1xfia_         242 AANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIET  321 (360)
T ss_dssp             EEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTTB
T ss_pred             EECCCcchhhhhHHHHHHHHHHHhhhhhHhhhhcccceEEecCCCCCCCcChHhCCHHHHHHHhcCCEEEEcCCcchhhc
Confidence            99999999999999999999999988888889998888999999999999999999999999999999999999998899


Q ss_pred             ccccccccccccccccCCHHHHHHhCCCccCEEEEecc
Q 023499          241 NLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE  278 (281)
Q Consensus       241 ~~~~~~~~~~~~l~~~KC~~va~~lg~~~~~~v~~~~~  278 (281)
                      |+++.|+|++++|+|+||++||+++|+++||+||++++
T Consensus       322 N~~a~f~c~~lkL~~vK~~~vA~~lGg~~~d~V~k~~~  359 (360)
T d1xfia_         322 NLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNE  359 (360)
T ss_dssp             STTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEEC
T ss_pred             cchhhcCCCeehhhhhcCHHHHHHhCCccccEEEEecC
Confidence            99999999999999999999999999999999999986

PyMOL of d1xfia_

>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure