Citrus Sinensis ID: 023540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MSFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEccEEEEEccccccccccccccccccccEEEEEEEEEEEccEEEEEEEcccccccccccccccccccccEEEEEccccEEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHEEEEEcccEEEEEccccccccccccccccccccccEEEEEEEEcccEEEEEEEccccccEEEEcccccccccccEEEEEccccEEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccEEc
Coil and Loop (DISEMBL)
MSFDDEESLEHTLLVVREVCvykipprttsggykcgewlqsdkiwtgrlrvvsckdrceirledpnsgelfaacfvqpgqrensvetvldsSRYFVLKIedgtgkhafiglgfnerneafdfnvalsDHEKYVRRELEkesgemsesdghidihpavnhrlkegetirinvkpkptsgtgmlsaagLSGAVSVSakaktvglapppsgmgkiraplppppndpaaarinsashnngvrapkettrhsttdpssdlsqiernfptsatsgssktpasgwaaf
Flexible Loop (DISEMBL)
MSFDDEESLEHTLLVVREVCVYKipprttsggykcgewlqsdkiwtgrlRVVSCKDRCEirledpnsgeLFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKesgemsesdghidihpavnhrlkegetiriNVKPKPTSGTGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSAshnngvrapkettrhsttdpssdlsqiernfptsatsgssktpasgwaaf
Low Complexity Region (SEG)
MSFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTsgtgmlsaaglsgavsvsakaktvgLAPPPSGMGKIRaplppppndpaaaRINSASHNNGVRAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF
Disordered region (IsUnstruct)
**********HTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHE*******************************************************************************************************************************************************
Disordered Region (DISOPRED)
****DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKY******************************EGETI**************************************************************************************************************WAAF
Disordered Region (DISEMBL)
**********HTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVR**************GHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNN********************SQIERNF*******************
Disordered Region (DISPRO)
****DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGE************AVNHRLKEGETIRINVKP************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q681Q7	272	Uncharacterized protein A	yes	no	0.921	0.952	0.747	5e-99
Q9NVZ3	263	Adaptin ear-binding coat-	yes	no	0.903	0.965	0.382	4e-40
Q6P756	263	Adaptin ear-binding coat-	yes	no	0.914	0.977	0.379	3e-39
Q3T093	275	Adaptin ear-binding coat-	yes	no	0.647	0.661	0.440	1e-38
Q5R630	275	Adaptin ear-binding coat-	no	no	0.686	0.701	0.430	2e-38
P69682	277	Adaptin ear-binding coat-	yes	no	0.676	0.685	0.447	4e-38
Q9CR95	275	Adaptin ear-binding coat-	yes	no	0.686	0.701	0.430	4e-38
Q8NC96	275	Adaptin ear-binding coat-	no	no	0.686	0.701	0.430	5e-38
Q9D1J1	266	Adaptin ear-binding coat-	no	no	0.704	0.744	0.423	2e-37
Q5E9Q4	266	Adaptin ear-binding coat-	no	no	0.708	0.748	0.420	8e-37

>sp|Q681Q7|Y1390_ARATH Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1

 Score =  360 bits (925), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 207/277 (74%), Positives = 229/277 (82%), Gaps = 18/277 (6%)

Query: 8   SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNS 67
           + EHTLLVVREV VYKIPPRTTSGGYKCGEWLQSDKIW+GRLRVVSCKDRCEIRLED NS
Sbjct: 11  TFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNS 70

Query: 68  GELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALS 127
           G+LFAACFV PG+RENSVE  LDSSRYFVL+I+DG GK+AFIGLGF ERNEAFDFNVALS
Sbjct: 71  GDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALS 130

Query: 128 DHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTS-GTGMLSAAG 186
           DHEKYVRRE EKE+GE SESD HIDIHPAVNHRLKEGETIRINVKPKPT+ GTGMLSAA 
Sbjct: 131 DHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAA- 189

Query: 187 LSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAPKETTRH 246
           LSG    + K K + LAPPP   G  R+PLPPPPNDP A+RI S          KE+ R+
Sbjct: 190 LSG----TGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASD-------GCKESRRN 238

Query: 247 STTDPSSDLSQIERNFPTSATSGSSKT--PASGWAAF 281
              +P SDLSQ+++N P++A SGSSK+   ASGWAAF
Sbjct: 239 ---EPLSDLSQLKKNLPSTAGSGSSKSTGAASGWAAF 272

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NVZ3|NECP2_HUMAN Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1

 Score =  165 bits (417), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 148/285 (51%), Gaps = 31/285 (10%)

Query: 5   DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
           +E   E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct: 2   EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED 61

Query: 65  PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
             SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118

Query: 123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGML 182
           NVAL DH K+V+++      E ++   + D  P ++   KEG+TI++N+         M 
Sbjct: 119 NVALQDHFKWVKQQC-----EFAKQAQNPDQGPKLDLGFKEGQTIKLNI-------ANMK 166

Query: 183 SAAGLSGAVSVS-AKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAA----RINSASHNNGV 237
              G +G   V  A    + L PPP G GK    +PPP    A      +   A  + G 
Sbjct: 167 KKEGAAGNPRVRPASTGGLSLLPPPPG-GKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGA 225

Query: 238 RAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKT-PASGWAAF 281
             P      +T D       I  +F  S  S SS+T P +GW  F
Sbjct: 226 PVPWPQPNPATAD-------IWGDFTKSTGSTSSQTQPGTGWVQF 263

Involved in endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q6P756|NECP2_RAT Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 150/282 (53%), Gaps = 25/282 (8%)

Query: 5   DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
           +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct: 2   EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61

Query: 65  PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
             SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118

Query: 123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGML 182
           NVAL DH K+V+++      E ++   + D  P ++   KEG+TI+IN+         M 
Sbjct: 119 NVALQDHFKWVKQQC-----EFAKQAQNPDEGPKLDLGFKEGQTIKINI-------ANMR 166

Query: 183 SAAGLSGAVSVS-AKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAPK 241
              G +GA     A A  + L PPP G GK+   +PP     +   +      +G     
Sbjct: 167 KKEGAAGAPRTRPASAGGLSLLPPPPG-GKMSTLIPPSGEQFSGGSLVQPVSGSG----G 221

Query: 242 ETTRHSTTDP-SSDLSQIERNFPTSATSGSSKT-PASGWAAF 281
            T     + P ++  + I  +F  S  S SS++ P +GW  F
Sbjct: 222 ATELWPQSKPAAAATADIWGDFTKSTGSPSSQSQPGTGWVQF 263

Involved in endocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q3T093|NECP1_BOVIN Adaptin ear-binding coat-associated protein 1 OS=Bos taurus GN=NECAP1 PE=2 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/227 (44%), Positives = 131/227 (57%), Gaps = 45/227 (19%)

Query: 6   EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
           E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED 
Sbjct: 4   ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDK 63

Query: 66  NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
            SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF++R +AFDFN
Sbjct: 64  VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFN 120

Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV---------- 171
           V+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++          
Sbjct: 121 VSLQDHFKWVKQESEISKESQEM-------DSRPKLDLGFKEGQTIKLSIGNITTKKGGT 173

Query: 172 -KPKPTSGTGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
            KPK T+GTG LS                  L PPP G GK+  P P
Sbjct: 174 SKPK-TAGTGGLS------------------LLPPPPG-GKVTIPPP 200

Involved in endocytosis.

Bos taurus (taxid: 9913)

>sp|Q5R630|NECP1_PONAB Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii GN=NECAP1 PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 23/216 (10%)

Query: 6   EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
           E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED 
Sbjct: 4   ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDK 63

Query: 66  NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
            SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64  VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120

Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGM 181
           V+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++        G 
Sbjct: 121 VSLQDHFKWVKQESEISKESQEM-------DARPKLDLGFKEGQTIKLSI--------GN 165

Query: 182 LSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
           ++      +   +A+   + L PPP G GK+  P P
Sbjct: 166 ITNKEGGASKPRTARGGGLSLLPPPPG-GKVTIPPP 200

Involved in endocytosis.

Pongo abelii (taxid: 9601)

>sp|P69682|NECP1_RAT Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus GN=Necap1 PE=1 SV=1

 Score =  158 bits (400), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 128/219 (58%), Gaps = 29/219 (13%)

Query: 6   EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
           E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED 
Sbjct: 4   ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 63

Query: 66  NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
            SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64  VSGELFAQAPVEQYPGI---AVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120

Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRI---NVKPKPTSG 178
           V+L DH K+V++E E  KES EM       D  P ++   KEG+TI++   N+  K   G
Sbjct: 121 VSLQDHFKWVKQETEISKESQEM-------DSRPKLDLGFKEGQTIKLSIGNITAK-KGG 172

Query: 179 TGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
           T    A+G  G          + L PPP G GK+  P P
Sbjct: 173 TSKPRASGTGG----------LSLLPPPPG-GKVTIPPP 200

Involved in endocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9CR95|NECP1_MOUSE Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2

 Score =  158 bits (400), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 23/216 (10%)

Query: 6   EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
           E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED 
Sbjct: 4   ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 63

Query: 66  NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
            SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64  VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120

Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGM 181
           V+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++        G 
Sbjct: 121 VSLQDHFKWVKQETEISKESQEM-------DNRPKLDLGFKEGQTIKLSI--------GN 165

Query: 182 LSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
           ++A     +   ++    + L PPP G GK+  P P
Sbjct: 166 ITAKKGGASKPRASGTGGLSLLPPPPG-GKVTIPPP 200

Involved in endocytosis.

Mus musculus (taxid: 10090)

>sp|Q8NC96|NECP1_HUMAN Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2

 Score =  158 bits (399), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 23/216 (10%)

Query: 6   EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
           E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED 
Sbjct: 4   ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDK 63

Query: 66  NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
            SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64  VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120

Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGM 181
           V+L DH K+V++E E  KES EM       D  P ++   KEG+TI++ +        G 
Sbjct: 121 VSLQDHFKWVKQESEISKESQEM-------DARPKLDLGFKEGQTIKLCI--------GN 165

Query: 182 LSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
           ++      +   +A+   + L PPP G GK+  P P
Sbjct: 166 ITNKKGGASKPRTARGGGLSLLPPPPG-GKVTIPPP 200

Involved in endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q9D1J1|NECP2_MOUSE Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/217 (42%), Positives = 123/217 (56%), Gaps = 19/217 (8%)

Query: 5   DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
           +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct: 2   EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61

Query: 65  PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
             SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIGLGF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDF 118

Query: 123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGML 182
           NVAL DH K+V+++      E ++   + D  P ++   K+G+TI+IN+         M 
Sbjct: 119 NVALQDHFKWVKQQC-----EFAKQAQNPDEGPKLDLGFKDGQTIKINI-------ANMR 166

Query: 183 SAAGLSGAVSVS-AKAKTVGLAPPPSGMGKIRAPLPP 218
              G +G        A  + L PPP G GK    +PP
Sbjct: 167 KKEGAAGTPRARPTSAGGLSLLPPPPG-GKSSTVIPP 202

Involved in endocytosis.

Mus musculus (taxid: 10090)

>sp|Q5E9Q4|NECP2_BOVIN Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1

 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 15/214 (7%)

Query: 5   DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
           +E   E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct: 2   EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLED 61

Query: 65  PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
             SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118

Query: 123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGML 182
           NVAL DH K+V+++      E ++   + D  P ++   KEG+TI++N+     S     
Sbjct: 119 NVALQDHFKWVKQQC-----EFAKQAQNPDQGPKLDLSFKEGQTIKLNI----ASMKKKD 169

Query: 183 SAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPL 216
            AAG   A   S    ++ L PPP       APL
Sbjct: 170 GAAGTPRARPTSTGGLSL-LPPPPGAKTAALAPL 202

Involved in endocytosis.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
255577954	282	Adaptin ear-binding coat-associated prot	0.992	0.989	0.809	1e-114
326514112	280	predicted protein [Hordeum vulgare subsp	0.978	0.982	0.723	1e-114
357146615	280	PREDICTED: uncharacterized protein At1g0	0.985	0.989	0.717	1e-113
118484545	282	unknown [Populus trichocarpa]	0.992	0.989	0.785	1e-112
225438091	278	PREDICTED: uncharacterized protein At1g0	0.989	1.0	0.790	1e-111
116788968	283	unknown [Picea sitchensis]	0.985	0.978	0.731	1e-110
359480294	284	PREDICTED: uncharacterized protein At1g0	0.989	0.978	0.773	1e-109
224082836	288	ABC transporter family protein [Populus	0.925	0.902	0.795	1e-108
242039389	284	hypothetical protein SORBIDRAFT_01g01942	0.978	0.968	0.725	1e-103
212274533	284	uncharacterized protein LOC100192009 [Ze	0.978	0.968	0.725	1e-103

>gi|255577954|ref|XP_002529849.1| Adaptin ear-binding coat-associated protein, putative [Ricinus communis] gi|223530677|gb|EEF32550.1| Adaptin ear-binding coat-associated protein, putative [Ricinus communis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/284 (80%), Positives = 251/284 (88%), Gaps = 5/284 (1%)

Query: 1   MSFDD-EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCE 59
           MSFDD EES+EHTLLVVREV VYKIPPR+TSGGYKCGEWLQSDKIW+GRLRVVSCKDRCE
Sbjct: 1   MSFDDDEESMEHTLLVVREVSVYKIPPRSTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 60  IRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEA 119
           IRLEDPNSGELFAACFV PGQRENSVETVLDSSRYFVLKIEDG GKHAFIGLGF ERNEA
Sbjct: 61  IRLEDPNSGELFAACFVLPGQRENSVETVLDSSRYFVLKIEDGRGKHAFIGLGFGERNEA 120

Query: 120 FDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGT 179
           FDFNVALSDHEKYVRRE EK+S E SESD HIDIHPAVNHRLKEGETIRINVK KP+SGT
Sbjct: 121 FDFNVALSDHEKYVRRENEKDSAETSESDTHIDIHPAVNHRLKEGETIRINVKHKPSSGT 180

Query: 180 GMLSAAGLSGAVSVSAKAK--TVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGV 237
           GMLSAAGLSG+VS + K K   +G+APPPSG GKIR+PLPPPPNDPAAAR  + +H+ G+
Sbjct: 181 GMLSAAGLSGSVSGTTKPKPLALGIAPPPSGGGKIRSPLPPPPNDPAAARRTATNHSVGL 240

Query: 238 RAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF 281
           R  KE T + +TDP SDLS +ERN P++ +  S+KT ASGWAAF
Sbjct: 241 REQKENT-NCSTDPLSDLSPLERNLPSTTSG-STKTTASGWAAF 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326514112|dbj|BAJ92206.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326525923|dbj|BAJ93138.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/278 (72%), Positives = 232/278 (83%), Gaps = 3/278 (1%)

Query: 4   DDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLE 63
           D+EES EHTLLVVREV V+KIPPRTTSGGYKCGEWLQ+DKIWTGRLRVVSC DRCEIRLE
Sbjct: 6   DEEESFEHTLLVVREVSVFKIPPRTTSGGYKCGEWLQTDKIWTGRLRVVSCGDRCEIRLE 65

Query: 64  DPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
           DP SG+LFAACFV PGQR+++VETVLDSSRYFVL+IEDG GKHAF+GLGF ERNEAFDFN
Sbjct: 66  DPGSGDLFAACFVLPGQRDSAVETVLDSSRYFVLRIEDGRGKHAFVGLGFGERNEAFDFN 125

Query: 124 VALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLS 183
           VALSDHEKYV+RE +KE+G     D  IDIHPAVN RLKEGETIRINVK KP++G+GMLS
Sbjct: 126 VALSDHEKYVKREQDKETGGEDADDSQIDIHPAVNRRLKEGETIRINVKNKPSTGSGMLS 185

Query: 184 AAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAPKET 243
           +AGLSG  +   KA  + LAPPP   GK+R+PLPPPPND A+AR+NS  HN G R+ KE 
Sbjct: 186 SAGLSGGATEKPKASML-LAPPPGATGKLRSPLPPPPNDSASARMNSG-HNAGTRSSKEP 243

Query: 244 TRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF 281
           T+ +  DP SD+S IER+ P+SA  G +K+  +GWAAF
Sbjct: 244 TKKN-IDPFSDISAIERSLPSSAELGQTKSTGAGWAAF 280

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357146615|ref|XP_003574054.1| PREDICTED: uncharacterized protein At1g03900-like [Brachypodium distachyon]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/280 (71%), Positives = 234/280 (83%), Gaps = 3/280 (1%)

Query: 2   SFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIR 61
           S ++EE+ EHTLLVVREV V+KIPPR+TSGGYKCGEWLQ+DKIWTGRLRVVSC DRCEIR
Sbjct: 4   SVEEEEAFEHTLLVVREVSVFKIPPRSTSGGYKCGEWLQTDKIWTGRLRVVSCGDRCEIR 63

Query: 62  LEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFD 121
           LEDP SG+LFAACFV PGQRE++VETVLDSSRYFVL+IEDG GKHAF+GLGFNERNEAFD
Sbjct: 64  LEDPGSGDLFAACFVLPGQRESAVETVLDSSRYFVLRIEDGRGKHAFVGLGFNERNEAFD 123

Query: 122 FNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGM 181
           FNVALSDHEKYV+RE +KE+      +G IDIHPAVN RLKEGETIRINVK KP++G+GM
Sbjct: 124 FNVALSDHEKYVKREQDKEADGEEADEGQIDIHPAVNRRLKEGETIRINVKNKPSTGSGM 183

Query: 182 LSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAPK 241
           LS+AGLSG  +   KA  + LAPPP   GK+R+PLPPPPND A+AR+NS  HN G RAPK
Sbjct: 184 LSSAGLSGGPTEKPKASML-LAPPPGATGKLRSPLPPPPNDSASARLNSG-HNAGTRAPK 241

Query: 242 ETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF 281
           E T+ + +DP SD+S IER+ P+S   G +K   +GWAAF
Sbjct: 242 EPTKKN-SDPFSDISAIERSLPSSTELGQTKGTGAGWAAF 280

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484545|gb|ABK94146.1| unknown [Populus trichocarpa]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/284 (78%), Positives = 251/284 (88%), Gaps = 5/284 (1%)

Query: 1   MSFD-DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCE 59
           MSF+ D+ES EHTLLVVREV VYKIPPR+T+GGYKCGEWLQSDKIW+GRLRVVSCKDRCE
Sbjct: 1   MSFEEDDESFEHTLLVVREVSVYKIPPRSTAGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 60  IRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEA 119
           IRLEDPNSG+LFAACFV PGQRENSVETVLDSSRYFVLKIEDG GKHAF+GLGF ERNEA
Sbjct: 61  IRLEDPNSGDLFAACFVNPGQRENSVETVLDSSRYFVLKIEDGGGKHAFVGLGFAERNEA 120

Query: 120 FDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGT 179
           FDFNVALSDHEKYVRRE EKESGE SESD HIDIHPAVN RLKEGETIRINVKPKP++G 
Sbjct: 121 FDFNVALSDHEKYVRRENEKESGETSESDAHIDIHPAVNQRLKEGETIRINVKPKPSAGA 180

Query: 180 GMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNN-GVR 238
           GMLSAAGLSG VS + K K + +APPP+G+GK+R+PLPPPPNDPAAAR+ + +H   G++
Sbjct: 181 GMLSAAGLSGGVSTTGKPKPLAIAPPPTGVGKLRSPLPPPPNDPAAARMTAGNHGGIGLK 240

Query: 239 -APKETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF 281
            +PKE+TR S TD  SDLS +ERN P++ +  S+KT ASGWAAF
Sbjct: 241 VSPKESTRWS-TDSLSDLSPLERNLPSTTSG-STKTTASGWAAF 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438091|ref|XP_002276998.1| PREDICTED: uncharacterized protein At1g03900 isoform 1 [Vitis vinifera] gi|147765951|emb|CAN67814.1| hypothetical protein VITISV_002501 [Vitis vinifera] gi|297744166|emb|CBI37136.3| unnamed protein product [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/281 (79%), Positives = 245/281 (87%), Gaps = 3/281 (1%)

Query: 1   MSFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEI 60
           MSFD++E+ EHTLLVVREV VYKIPPR+TSGGYKCGEWLQSD IWTGRLRVVSCKDRCEI
Sbjct: 1   MSFDEDEAFEHTLLVVREVSVYKIPPRSTSGGYKCGEWLQSDLIWTGRLRVVSCKDRCEI 60

Query: 61  RLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAF 120
           RLEDPNSGELFAACFV PGQRE+SVETVLDSSRYFVLKIEDG GKHAFIGLGF ERNEAF
Sbjct: 61  RLEDPNSGELFAACFVLPGQRESSVETVLDSSRYFVLKIEDGAGKHAFIGLGFAERNEAF 120

Query: 121 DFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTG 180
           DFNVALSDHEKYVRRE EKE+GE S+   HIDIHPAVNHRLK+GETIRINVK K TSGTG
Sbjct: 121 DFNVALSDHEKYVRREQEKETGEASDDGSHIDIHPAVNHRLKDGETIRINVKNKATSGTG 180

Query: 181 MLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAP 240
           MLSAAGLSG  S + K KT+GLAPPP+G GKIR+PLPPPPNDPAAAR+ S+  +  ++  
Sbjct: 181 MLSAAGLSGTQSGTGKPKTLGLAPPPTGAGKIRSPLPPPPNDPAAARMTSSGVD--LKGS 238

Query: 241 KETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF 281
           +E  RH TTD  S LSQ+E++ P S +SGS+KT ASGWAAF
Sbjct: 239 EEDMRH-TTDAFSGLSQLEKSLPASTSSGSTKTTASGWAAF 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116788968|gb|ABK25067.1| unknown [Picea sitchensis]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/287 (73%), Positives = 238/287 (82%), Gaps = 10/287 (3%)

Query: 1   MSFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEI 60
           MSF++EE+ EHTLLVVREV VYKIPPR+TSG YKCGEWLQSDKIWTGRLRVVSCK+RCEI
Sbjct: 1   MSFEEEEAFEHTLLVVREVSVYKIPPRSTSGSYKCGEWLQSDKIWTGRLRVVSCKERCEI 60

Query: 61  RLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAF 120
           RLED N+GELFAAC+V PG RE SVETV DSSRYFVLKIEDG GKHAFIGLGF ERNEAF
Sbjct: 61  RLEDSNTGELFAACYVYPGHRETSVETVADSSRYFVLKIEDGRGKHAFIGLGFAERNEAF 120

Query: 121 DFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTG 180
           DFNVALSDHEKY+RRE EKE GE +E DG I+IHPAVN RLKEGETIRINVK K ++GTG
Sbjct: 121 DFNVALSDHEKYIRREQEKEKGEENE-DGKIEIHPAVNQRLKEGETIRINVKNKASAGTG 179

Query: 181 MLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSAS-----HNN 235
           MLSAAGL+G+VS + + K   LAPPP G G+IR+PLPPPPND   A+I SA       N 
Sbjct: 180 MLSAAGLAGSVSSTGRQK-ASLAPPP-GSGRIRSPLPPPPNDTVTAKIGSAMSSIPIQNT 237

Query: 236 GVRAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSK-TPASGWAAF 281
           G +  ++TTRH+  DP SDLSQ+E + P+S +SGS+K T ASGWAAF
Sbjct: 238 GSKFSRDTTRHN-ADPLSDLSQLEMSLPSSTSSGSAKTTSASGWAAF 283

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480294|ref|XP_003632429.1| PREDICTED: uncharacterized protein At1g03900 isoform 2 [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/287 (77%), Positives = 245/287 (85%), Gaps = 9/287 (3%)

Query: 1   MSFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEI 60
           MSFD++E+ EHTLLVVREV VYKIPPR+TSGGYKCGEWLQSD IWTGRLRVVSCKDRCEI
Sbjct: 1   MSFDEDEAFEHTLLVVREVSVYKIPPRSTSGGYKCGEWLQSDLIWTGRLRVVSCKDRCEI 60

Query: 61  RLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAF 120
           RLEDPNSGELFAACFV PGQRE+SVETVLDSSRYFVLKIEDG GKHAFIGLGF ERNEAF
Sbjct: 61  RLEDPNSGELFAACFVLPGQRESSVETVLDSSRYFVLKIEDGAGKHAFIGLGFAERNEAF 120

Query: 121 DFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTG 180
           DFNVALSDHEKYVRRE EKE+GE S+   HIDIHPAVNHRLK+GETIRINVK K TSGTG
Sbjct: 121 DFNVALSDHEKYVRREQEKETGEASDDGSHIDIHPAVNHRLKDGETIRINVKNKATSGTG 180

Query: 181 MLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAP 240
           MLSAAGLSG  S + K KT+GLAPPP+G GKIR+PLPPPPNDPAAAR+ S+  +  ++  
Sbjct: 181 MLSAAGLSGTQSGTGKPKTLGLAPPPTGAGKIRSPLPPPPNDPAAARMTSSGVD--LKGS 238

Query: 241 KETTRHSTTDPSSDLSQIE------RNFPTSATSGSSKTPASGWAAF 281
           +E  RH TTD  S LSQ+E      ++ P S +SGS+KT ASGWAAF
Sbjct: 239 EEDMRH-TTDAFSGLSQLESCWNLQKSLPASTSSGSTKTTASGWAAF 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082836|ref|XP_002306860.1| ABC transporter family protein [Populus trichocarpa] gi|222856309|gb|EEE93856.1| ABC transporter family protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/264 (79%), Positives = 236/264 (89%), Gaps = 4/264 (1%)

Query: 1   MSFD-DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCE 59
           MSF+ D+ES EHTLLVVREV VYKIPPR+T+GGYKCGEWLQSDKIW+GRLRVVSCKDRCE
Sbjct: 1   MSFEEDDESFEHTLLVVREVSVYKIPPRSTAGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 60  IRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEA 119
           IRLEDPNSG+LFAACFV PGQRENSVETVLDSSRYFVLKIEDG GKHAF+GLGF ERNEA
Sbjct: 61  IRLEDPNSGDLFAACFVNPGQRENSVETVLDSSRYFVLKIEDGGGKHAFVGLGFAERNEA 120

Query: 120 FDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGT 179
           FDFNVALSDHEKYVRRE EKESGE SESD HIDIHPAVN RLKEGETIRINVKPKP++G 
Sbjct: 121 FDFNVALSDHEKYVRRENEKESGETSESDAHIDIHPAVNQRLKEGETIRINVKPKPSAGA 180

Query: 180 GMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNN-GVR 238
           GMLSAAGLSG VS + K K + +APPP+G+GK+R+PLPPPPNDPAAAR+ + +H   G++
Sbjct: 181 GMLSAAGLSGGVSTTGKPKPLAIAPPPTGVGKLRSPLPPPPNDPAAARMTAGNHGGIGLK 240

Query: 239 -APKETTRHSTTDPSSDLSQIERN 261
            +PKE+TR S TD  SDLS +E++
Sbjct: 241 VSPKESTRWS-TDSLSDLSPLEKS 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039389|ref|XP_002467089.1| hypothetical protein SORBIDRAFT_01g019420 [Sorghum bicolor] gi|241920943|gb|EER94087.1| hypothetical protein SORBIDRAFT_01g019420 [Sorghum bicolor]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/281 (72%), Positives = 232/281 (82%), Gaps = 6/281 (2%)

Query: 4   DDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLE 63
           ++EE+ EHTLLVVREV VYKIPPRTTSGGYKCGEWLQSDKIW+GRLRVVSC DRCEIRLE
Sbjct: 7   EEEEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCGDRCEIRLE 66

Query: 64  DPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
           DP +GELFAACFV PGQRE++VETVLDSSRYFVL+IEDG GKHAF+GLGFNERNEAFDFN
Sbjct: 67  DPATGELFAACFVLPGQRESAVETVLDSSRYFVLRIEDGRGKHAFVGLGFNERNEAFDFN 126

Query: 124 VALSDHEKYVRRELEK---ESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTG 180
           VALSDHEKYV+RE EK    +G      G IDIHPAVN RLKEGETIRI VK KP++G+G
Sbjct: 127 VALSDHEKYVKREQEKETAGAGGEETGGGEIDIHPAVNRRLKEGETIRITVKNKPSTGSG 186

Query: 181 MLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAP 240
           MLSAAGLSG  +   K   + LAPPP   GK+R+PLPPPPNDPAAAR+NS  H  G+RAP
Sbjct: 187 MLSAAGLSGGTTAKPKTSML-LAPPPGAAGKLRSPLPPPPNDPAAARMNSG-HTAGIRAP 244

Query: 241 KETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF 281
           KE T+ +  DP SDLS I++N P+SA  G +K+  +GWAAF
Sbjct: 245 KEPTKRN-NDPFSDLSAIKQNLPSSAEPGQTKSTGAGWAAF 284

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212274533|ref|NP_001130905.1| uncharacterized protein LOC100192009 [Zea mays] gi|194690410|gb|ACF79289.1| unknown [Zea mays] gi|194693188|gb|ACF80678.1| unknown [Zea mays] gi|194696602|gb|ACF82385.1| unknown [Zea mays] gi|195638966|gb|ACG38951.1| adaptin ear-binding coat-associated protein 2 [Zea mays] gi|413934051|gb|AFW68602.1| putative adaptin ear-binding coat-associated protein 1 NECAP-1 family protein isoform 1 [Zea mays] gi|413934052|gb|AFW68603.1| putative adaptin ear-binding coat-associated protein 1 NECAP-1 family protein isoform 2 [Zea mays] gi|413934053|gb|AFW68604.1| putative adaptin ear-binding coat-associated protein 1 NECAP-1 family protein isoform 3 [Zea mays]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/281 (72%), Positives = 232/281 (82%), Gaps = 6/281 (2%)

Query: 4   DDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLE 63
           ++EE+ EHTLLVVREV VYKIPPRTTSGGYKCGEWLQSDKIW+GRLRVVSC DRCEIRLE
Sbjct: 7   EEEEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCGDRCEIRLE 66

Query: 64  DPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
           DP +GELFAACFV PGQRE++VETVLDSSRYFVL+IEDG GKHAF+GLGFNERNEAFDFN
Sbjct: 67  DPATGELFAACFVLPGQRESAVETVLDSSRYFVLRIEDGRGKHAFVGLGFNERNEAFDFN 126

Query: 124 VALSDHEKYVRRELEK---ESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTG 180
           VALSDHEKYV+RE EK    +G      G IDIHPAVN RLKEGETIRI VK KP++G+G
Sbjct: 127 VALSDHEKYVKREQEKETTGAGGEETGGGEIDIHPAVNRRLKEGETIRITVKNKPSTGSG 186

Query: 181 MLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAP 240
           MLSAAGLSG  +   K   + LAPPP   GK+R+PLPPPPNDPAAAR+NS  H  G+RAP
Sbjct: 187 MLSAAGLSGGTTAKPKTSML-LAPPPGAAGKLRSPLPPPPNDPAAARMNSG-HTAGIRAP 244

Query: 241 KETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF 281
           KE T+ +  DP SDLS I++N P+SA  G +K+  +GWAAF
Sbjct: 245 KEPTKRN-NDPFSDLSAIKQNLPSSAEPGQTKSTGAGWAAF 284

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2024208	272	ABCI18 "AT1G03900" [Arabidopsi	0.950	0.981	0.664	3.1e-90
ZFIN|ZDB-GENE-050522-67	260	necap2 "NECAP endocytosis asso	0.583	0.630	0.447	4e-37
UNIPROTKB|Q9NVZ3	263	NECAP2 "Adaptin ear-binding co	0.565	0.604	0.455	5.1e-37
UNIPROTKB|F1NN78	266	NECAP2 "Uncharacterized protei	0.562	0.593	0.476	1e-36
UNIPROTKB|F1SUS2	280	NECAP2 "Uncharacterized protei	0.565	0.567	0.461	3.5e-36
DICTYBASE|DDB_G0281235	329	DDB_G0281235 "Adaptin ear-bind	0.569	0.486	0.461	1.5e-35
UNIPROTKB|E2QYH0	267	NECAP2 "Uncharacterized protei	0.932	0.981	0.355	6.5e-35
RGD|735063	263	Necap2 "NECAP endocytosis asso	0.914	0.977	0.354	2.2e-34
MGI|MGI:1913397	266	Necap2 "NECAP endocytosis asso	0.565	0.597	0.467	5.8e-34
UNIPROTKB|Q3T093	275	NECAP1 "Adaptin ear-binding co	0.555	0.567	0.482	7.4e-34

TAIR|locus:2024208 ABCI18 "AT1G03900" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 190/286 (66%), Positives = 210/286 (73%)

Query:     1 MSFDDEE---SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDR 57
             MSF++EE   + EHTLLVVREV VYKIPPRTTSGGYKCGEWLQSDKIW+GRLRVVSCKDR
Sbjct:     1 MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR 60

Query:    58 CEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERN 117
             CEIRLED NSG+LFAACFV PG+RENSVE  LDSSRYFVL+I+DG GK+AFIGLGF ERN
Sbjct:    61 CEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERN 120

Query:   118 EAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTX 177
             EAFDFNVALSDHEKYVRRE EKE+GE SESD HIDIHPAVNHRLKEGETIRINVKPKPT 
Sbjct:   121 EAFDFNVALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPTT 180

Query:   178 XXXXXXXXXXXXXXXXXXXXXXXXLAPPPSGMGKIRXXXXXXXXXXXXXRINSASHNNGV 237
                                     LAPPP   G  R             RI S    +G 
Sbjct:   181 NGTGMLSAALSGTGKPKPLA----LAPPPKAAGVTRSPLPPPPNDPVASRIAS----DGC 232

Query:   238 RAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKTP--ASGWAAF 281
                KE+ R+   +P SDLSQ+++N P++A SGSSK+   ASGWAAF
Sbjct:   233 ---KESRRN---EPLSDLSQLKKNLPSTAGSGSSKSTGAASGWAAF 272

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006897 "endocytosis" evidence=IEA

GO:0006858 "extracellular transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

ZFIN|ZDB-GENE-050522-67 necap2 "NECAP endocytosis associated 2" [Danio rerio (taxid:7955)]

 Score = 375 (137.1 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 77/172 (44%), Positives = 113/172 (65%)

Query:     1 MSFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEI 60
             M  D     E  L V  EV VY+IPPR+++ GY+  +W   +  W+GR+++++      I
Sbjct:     1 MMADGNALYESVLCVKAEVHVYRIPPRSSNRGYRAADWKLDEPAWSGRMKIIAKGKTAYI 60

Query:    61 RLEDPNSGELFAACFVQPGQRENSV-ETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEA 119
             +LED N+GELFA   V+  Q  +SV E V+DSSRYFV++IEDG G+HAFIGLGF +R ++
Sbjct:    61 KLEDRNTGELFAQAAVE--QYPSSVVEAVVDSSRYFVIRIEDGNGRHAFIGLGFADRGDS 118

Query:   120 FDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 171
             FDFNVAL DH K+V++E      +++  +   D  P ++   KEG+TI+IN+
Sbjct:   119 FDFNVALQDHFKWVKQE-----SDLARQEAVQDSVPKLDLGFKEGQTIKINI 165

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9NVZ3 NECAP2 "Adaptin ear-binding coat-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 366 (133.9 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 77/169 (45%), Positives = 105/169 (62%)

Query:     5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
             +E   E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct:     2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED 61

Query:    65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
               SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct:    62 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118

Query:   123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 171
             NVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+
Sbjct:   119 NVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLGFKEGQTIKLNI 162

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0005622 "intracellular" evidence=IDA

UNIPROTKB|F1NN78 NECAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 80/168 (47%), Positives = 108/168 (64%)

Query:     6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
             EE  E  L V   V VY++PPR ++ GY+  EW      W+GRLR+ +      I+LED 
Sbjct:     2 EEDYEAVLCVKPAVHVYRVPPRASNRGYRSAEWQLDQPAWSGRLRITAKGKTAFIKLEDK 61

Query:    66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
              SGELFA   V+  PG    +VE+V DSSRYFVL+IEDG G+ AFIG+GF +R +AFDFN
Sbjct:    62 TSGELFAQAPVEQFPGI---AVESVTDSSRYFVLRIEDGNGRRAFIGVGFVDRGDAFDFN 118

Query:   124 VALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 171
             VAL DH K+VR++   E  + SE+    D  P ++   KEG+TI++N+
Sbjct:   119 VALQDHFKWVRQQ--NELAKQSENP---DQAPKLDLGFKEGQTIKLNI 161

GO:0006897 "endocytosis" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

UNIPROTKB|F1SUS2 NECAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 366 (133.9 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 78/169 (46%), Positives = 105/169 (62%)

Query:     5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
             +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct:     3 EEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLED 62

Query:    65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
               SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct:    63 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 119

Query:   123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 171
             NVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+
Sbjct:   120 NVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLSFKEGQTIKLNI 163

GO:0030125 "clathrin vesicle coat" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

DICTYBASE|DDB_G0281235 DDB_G0281235 "Adaptin ear-binding coat-associated protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 79/171 (46%), Positives = 113/171 (66%)

Query:     6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
             +E  E TLLV +E  +Y+IPPR ++ GYK  +W  S  IWTGRL +V+  + C IR EDP
Sbjct:     2 DEDYEQTLLVKKECFIYRIPPRPSASGYKAQDWDPSSFIWTGRLVIVARGENCVIRFEDP 61

Query:    66 NSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVA 125
             N+GE+FA C   P   +NSVE V+DSSRYFV++I+DG  +HAF+G+GF +R++AF+FN  
Sbjct:    62 NNGEIFAQC---PFD-QNSVEPVVDSSRYFVIRIKDGE-RHAFVGMGFTDRDDAFEFNAT 116

Query:   126 LSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPT 176
             L DH+ Y++    K+  E+   +   +  P  ++ LK G+TI I  K  PT
Sbjct:   117 LQDHQNYIKN---KKDIEIQRRN--YENEPKKDYSLKTGQTIHIPFKA-PT 161

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

UNIPROTKB|E2QYH0 NECAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 100/281 (35%), Positives = 136/281 (48%)

Query:     5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
             +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct:     2 EEGEYESVLCVKPEVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLED 61

Query:    65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
               SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct:    62 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118

Query:   123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTXXXXXX 182
             NVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+           
Sbjct:   119 NVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLGFKEGQTIKLNI-----ANMKKK 168

Query:   183 XXXXXXXXXXXXXXXXXXXLAPPPSGMGKIRXXXXXXXXXXXXXRINSASHNNGVRAPKE 242
                                L PPP G                   + +A   + V     
Sbjct:   169 EGAAGTPRARPASTGGLSLLPPPPGGKTSTLIPPPGEQLSGGAPVVQTAVAPSSVGGA-- 226

Query:   243 TTRHSTTDPSSDLS-QIERNFPTSATSGSSKT-PASGWAAF 281
             TT      P++  +  I  +F  SA S SS+T P +GW  F
Sbjct:   227 TTSWPQPKPATTATTDIWGDFTKSAGSTSSQTQPGTGWVQF 267

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

RGD|735063 Necap2 "NECAP endocytosis associated 2" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 100/282 (35%), Positives = 138/282 (48%)

Query:     5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
             +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct:     2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61

Query:    65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
               SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct:    62 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118

Query:   123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTXXXXXX 182
             NVAL DH K+V+++ E      +  +G     P ++   KEG+TI+IN+           
Sbjct:   119 NVALQDHFKWVKQQCEFAKQAQNPDEG-----PKLDLGFKEGQTIKINI------ANMRK 167

Query:   183 XXXXXXXXXXXXXXXXXXXLAPPPSGMGKIRXXXX-XXXXXXXXXRINSASHNNGVRAPK 241
                                L PPP G GK+                +   S + G     
Sbjct:   168 KEGAAGAPRTRPASAGGLSLLPPPPG-GKMSTLIPPSGEQFSGGSLVQPVSGSGGA---- 222

Query:   242 ETTRHSTTDPSSDLS-QIERNFPTSATSGSSKT-PASGWAAF 281
              T     + P++  +  I  +F  S  S SS++ P +GW  F
Sbjct:   223 -TELWPQSKPAAAATADIWGDFTKSTGSPSSQSQPGTGWVQF 263

GO:0005622 "intracellular" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=ISO;ISS

MGI|MGI:1913397 Necap2 "NECAP endocytosis associated 2" [Mus musculus (taxid:10090)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 79/169 (46%), Positives = 106/169 (62%)

Query:     5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
             +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED
Sbjct:     2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61

Query:    65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
               SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIGLGF +R +AFDF
Sbjct:    62 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDF 118

Query:   123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 171
             NVAL DH K+V+++ E      +  +G     P ++   K+G+TI+IN+
Sbjct:   119 NVALQDHFKWVKQQCEFAKQAQNPDEG-----PKLDLGFKDGQTIKINI 162

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

UNIPROTKB|Q3T093 NECAP1 "Adaptin ear-binding coat-associated protein 1" [Bos taurus (taxid:9913)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 82/170 (48%), Positives = 111/170 (65%)

Query:     6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
             E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED 
Sbjct:     4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDK 63

Query:    66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
              SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF++R +AFDFN
Sbjct:    64 VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFN 120

Query:   124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV 171
             V+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++
Sbjct:   121 VSLQDHFKWVKQESEISKESQEM-------DSRPKLDLGFKEGQTIKLSI 163

GO:0005886 "plasma membrane" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NVZ3	NECP2_HUMAN	No assigned EC number	0.3824	0.9039	0.9657	yes	no
Q6P756	NECP2_RAT	No assigned EC number	0.3794	0.9145	0.9771	yes	no
Q681Q7	Y1390_ARATH	No assigned EC number	0.7472	0.9217	0.9522	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI3G28700.1 annotation not avaliable (280 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
pfam07933	158	pfam07933, DUF1681, Protein of unknown function (D	1e-81
cd13228	120	cd13228, PHear_NECAP, NECAP (adaptin-ear-binding c	1e-74
cd00900	88	cd00900, PH-like, Pleckstrin homology-like domain	2e-05

>gnl|CDD|219649 pfam07933, DUF1681, Protein of unknown function (DUF1681)

 Score =  242 bits (619), Expect = 1e-81
 Identities = 85/165 (51%), Positives = 109/165 (66%), Gaps = 8/165 (4%)

Query: 8   SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNS 67
            +E  L V  EV VYKIPPR++S GY+  +W   + IWTGRLRVV   DR  I LEDP++
Sbjct: 1   EIERVLFVKPEVHVYKIPPRSSSKGYRAADWKLDEPIWTGRLRVVEKGDRVSIVLEDPST 60

Query: 68  GELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALS 127
           GELFA          N+VE VLDSSRYFV++++D TG+ AFIG+GF +R++AFDFNVAL 
Sbjct: 61  GELFAQAPYDS---YNAVEPVLDSSRYFVIRVQDPTGRKAFIGIGFEDRSDAFDFNVALQ 117

Query: 128 DHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVK 172
           DH K+V+ E E    + S      D  P ++  LKEGETI IN+ 
Sbjct: 118 DHFKWVKNESEPSKQKESN-----DSEPKLDLSLKEGETITINLG 157

This family is composed of sequences derived from a number of hypothetical eukaryotic proteins of unknown function. Length = 158

>gnl|CDD|241382 cd13228, PHear_NECAP, NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like function (PHear) domain

 Score =  223 bits (570), Expect = 1e-74
 Identities = 73/121 (60%), Positives = 92/121 (76%), Gaps = 1/121 (0%)

Query: 11  HTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGEL 70
             LLV  EV VY+IPPR ++ GY+  +W     +WTGRLRVV+  ++CEIRLEDPN+GEL
Sbjct: 1   SVLLVKPEVYVYRIPPRASARGYRAADWGLEKPLWTGRLRVVAKGEKCEIRLEDPNTGEL 60

Query: 71  FAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHE 130
           FA C V       +VE V+DSSRYFVL++EDG+G+HAFIG+GF ER++AFDFNVAL DH 
Sbjct: 61  FAQCPVDVD-PGTAVEPVVDSSRYFVLRVEDGSGRHAFIGIGFRERSDAFDFNVALQDHF 119

Query: 131 K 131
           K
Sbjct: 120 K 120

NECAPs are alpha-ear-binding proteins that enrich on clathrin-coated vesicles (CCVs). NECAP 1 is expressed in brain and non-neuronal tissues and cells while NECAP 2 is ubiquitously expressed. The PH-like domain of NECAPs is a protein-binding interface that mimics the FxDxF motif binding properties of the alpha-ear and is called PHear (PH fold with ear-like function) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241235 cd00900, PH-like, Pleckstrin homology-like domain

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 45  WTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTG 104
             G L + S  +R  + L D     L     +    + N      DS R  VL+++D   
Sbjct: 16  GRGTLFITS--NR--LILRDKQDDRLKLKIPISDIVKVNPS-RASDSDRALVLRLKD--- 67

Query: 105 KHAFIGLGFNERNEA 119
           K   +G  F  + EA
Sbjct: 68  KRESLGFSFKSKEEA 82

The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
KOG2500	253	consensus Uncharacterized conserved protein [Funct	100.0
PF07933	160	DUF1681: Protein of unknown function (DUF1681); In	100.0
cd00835	122	RanBD Ran-binding domain. Ran-binding domain; This	92.53
cd00837	104	EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog	90.98
PF00568	111	WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1	89.1
PF00638	122	Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is	88.63

>KOG2500 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.4e-89  Score=613.84  Aligned_cols=252  Identities=48%  Similarity=0.795  Sum_probs=202.9

Q ss_pred             CcccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeeEEEEecCCCccceeeeeccCCCCCC
Q 023540            4 DDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQREN   83 (281)
Q Consensus         4 ~~~~~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g~~~~I~LED~~tGeLFA~cPv~pg~~~~   83 (281)
                      +++++||+||||++|||||+||||++++||||+||++++|+||||||||++|+.|+|+|||++||+|||+|||++|.. +
T Consensus         1 ~e~~~yE~vL~v~pev~VY~IPPr~t~~gyra~eW~l~~~~WtGrlrvvakg~~~~ikLeD~tsg~LfA~c~id~~~~-~   79 (253)
T KOG2500|consen    1 EEEEAYESVLFVKPEVFVYKIPPRATSRGYRAGEWNLDKPAWTGRLRVVAKGERCEIKLEDKTSGELFAQCPIDEGPG-N   79 (253)
T ss_pred             CccccceeEEEecccEEEEECCCcccCCCccccccccCCccccceeEEEEcCcEEEEEeccCCchhhhhhCcccCCCC-c
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999976533 8


Q ss_pred             ceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcCCCCCC
Q 023540           84 SVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKE  163 (281)
Q Consensus        84 aVE~ViDSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~l~r~~e~~~~~~~~~~~~~~~~P~~D~sLKE  163 (281)
                      +||+|+||||||||||+|++||||||||||.||+||||||||||||+||++|++++|+++     ++++.+|++||+|||
T Consensus        80 avEav~DSSRYFViRv~dgngr~AFiGlGF~eR~dafDfnvaLqDHfkyv~~~~e~ek~e-----q~~d~~pslDlgFKE  154 (253)
T KOG2500|consen   80 AVEAVSDSSRYFVIRVEDGNGRHAFIGLGFGERGDAFDFNVALQDHFKYVKRQKEAEKQE-----QHYDAGPSLDLGFKE  154 (253)
T ss_pred             cceeecccceEEEEEEeCCCccEEEEeecccccccccchhhhHHHHHHHHHHHHHHHhhh-----cccCCCccccccccC
Confidence            999999999999999999999999999999999999999999999999999999988753     588999999999999


Q ss_pred             CceEEEecCCCCCCCCCCccccCCCCCcccccccccccCCCCCCCCCCCCcCCCCC-CCChhhhhhcccccCCCccCCcc
Q 023540          164 GETIRINVKPKPTSGTGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPP-PNDPAAARINSASHNNGVRAPKE  242 (281)
Q Consensus       164 GeTI~Ini~~k~~~g~~~~s~~~~sg~~~~~~~~~~~~L~PPP~~~~~~~~plppP-P~~~~~~~~~~~~~~~~~~~~~~  242 (281)
                      ||||+|||+|.+. +.++.+..     ..+.++...-+|||||++   .+..|||| |.++.+-|..+..    .  ...
T Consensus       155 GeTIkinikn~tk-k~g~~s~p-----r~~~gk~gl~llPPPpgg---t~~ilPPP~p~a~v~t~~~Spg----~--sp~  219 (253)
T KOG2500|consen  155 GETIKINIKNITK-KKGAASWP-----RTGPGKGGLGLLPPPPGG---TSIILPPPPPLAPVTTAQSSPG----S--SPA  219 (253)
T ss_pred             CcEEEEEeecccc-cccccccc-----ccCCCCCcccccCCCCCC---cccccCCCCCCCccceeccCCC----C--CCC
Confidence            9999999997322 23333322     223333221235555555   33458888 8888877777764    1  222


Q ss_pred             ccCCCCCCCCCchhhhhhhCCCCCCCCCCCCCCCCcccC
Q 023540          243 TTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWAAF  281 (281)
Q Consensus       243 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  281 (281)
                      +  + +.-+++||.+....  .+.+..+...+..+|++|
T Consensus       220 ~--~-p~s~~sDlw~d~~~--As~s~~~q~~~~~nwvqF  253 (253)
T KOG2500|consen  220 P--Q-PSSALSDLWTDFEE--ASGSKKSQTAPSDNWVQF  253 (253)
T ss_pred             C--C-CCcccccccccccc--cccccccccCCCCCcccC
Confidence            2  1 14567888877332  223333444668999988

>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex

Probab=100.00  E-value=7.7e-79  Score=525.88  Aligned_cols=158  Identities=55%  Similarity=0.982  Sum_probs=90.5

Q ss_pred             ceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCee--EEEEecCCCccceeeeeccCCCCCCce
Q 023540            8 SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRC--EIRLEDPNSGELFAACFVQPGQRENSV   85 (281)
Q Consensus         8 ~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g~~~--~I~LED~~tGeLFA~cPv~pg~~~~aV   85 (281)
                      +||+|||++++||||+|||++|++||||+||++++|||||||||+++|++|  .|+|||++||+|||+|||..+   .+|
T Consensus         1 ~ie~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~---~~V   77 (160)
T PF07933_consen    1 AIERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDY---AAV   77 (160)
T ss_dssp             --S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS-----E
T ss_pred             CeeEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCC---Cce
Confidence            599999999999999999999999999999999999999999999999999  999999999999999999654   699


Q ss_pred             eEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcCCCCCCCc
Q 023540           86 ETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGE  165 (281)
Q Consensus        86 E~ViDSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~l~r~~e~~~~~~~~~~~~~~~~P~~D~sLKEGe  165 (281)
                      |+|+||||||||||+|++||||||||||+||+||||||||||||+||++++.+.+...     .+.+.+|++||||||||
T Consensus        78 E~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~~~~~-----~~~~~~p~~D~sLKeGe  152 (160)
T PF07933_consen   78 EPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQDHRKYLKREKEAEEQS-----QAAESQPKKDYSLKEGE  152 (160)
T ss_dssp             EE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-------------------------------
T ss_pred             EEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHHHHHHHhhchhhhhhhh-----cccCCCCccCCcCCCCC
Confidence            9999999999999999999999999999999999999999999999999887765432     24456899999999999


Q ss_pred             eEEEecCC
Q 023540          166 TIRINVKP  173 (281)
Q Consensus       166 TI~Ini~~  173 (281)
                      ||+|||++
T Consensus       153 tI~ini~g  160 (160)
T PF07933_consen  153 TIKINIGG  160 (160)
T ss_dssp             --------
T ss_pred             EEEEecCC
Confidence            99999974

This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.

>cd00835 RanBD Ran-binding domain

Probab=92.53  E-value=2.7  Score=34.38  Aligned_cols=108  Identities=19%  Similarity=0.289  Sum_probs=77.3

Q ss_pred             eeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeeEEEEecCCCccceeeeeccCCCCCCcee
Q 023540            9 LEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVE   86 (281)
Q Consensus         9 iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g--~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE   86 (281)
                      =|.+||.++ |-+|+.=.-       ..+|.   .-=.|-|+|....  .++-|.+....+|.|...++|.|+-   .+.
T Consensus         9 ~E~~if~~r-~KLy~~~~~-------~~~Wk---erG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~---~~~   74 (122)
T cd00835           9 DEEVIFSVR-AKLYRFDDE-------TKEWK---ERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGM---KLQ   74 (122)
T ss_pred             CcEEEEEEE-eEEEEEcCC-------CCCCe---eceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCc---EEe
Confidence            355667654 667765221       34684   3336889998875  5777777776799999999998873   566


Q ss_pred             EeccccceEEEEEecC---CCCeEEEeeeecccCcccchhhhhhhHH
Q 023540           87 TVLDSSRYFVLKIEDG---TGKHAFIGLGFNERNEAFDFNVALSDHE  130 (281)
Q Consensus        87 ~ViDSSRYFVLRV~D~---~GR~AfIGiGF~ERsdAFDFnVaLqD~~  130 (281)
                      ..--|.+++++-..|.   .+......|-|..=.+|=.|.-+++++.
T Consensus        75 ~~~~~~k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~  121 (122)
T cd00835          75 PMGNSDKSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEEAK  121 (122)
T ss_pred             ecCCCCcEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence            6665567777766663   3688899999988888888888888764

Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.

>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain

Probab=90.98  E-value=2.8  Score=33.74  Aligned_cols=94  Identities=20%  Similarity=0.312  Sum_probs=69.4

Q ss_pred             ceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEe--CCeeEEEEecCCCccceeeeeccCCCCCCceeEeccccce
Q 023540           17 REVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRY   94 (281)
Q Consensus        17 ~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~--g~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE~ViDSSRY   94 (281)
                      --++||..-|.+  +     .|.... --.|.|.++.-  .....|++.|..++.+==.|.++++     .+---++.-|
T Consensus         7 ~~a~v~~~~~~~--~-----~W~~~~-~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~-----~~y~~~~~~F   73 (104)
T cd00837           7 AVAQVYTADPST--G-----KWVPAS-GGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKG-----LKYTQATPFF   73 (104)
T ss_pred             EEEEEEEECCCC--C-----ceEECC-CCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCC-----cEEeecCCeE
Confidence            457788876652  2     375432 45799999865  4568999999998887778888775     5666677777


Q ss_pred             EEEEEecCCCCeEEEeeeecccCcccchhhhhhh
Q 023540           95 FVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSD  128 (281)
Q Consensus        95 FVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD  128 (281)
                      +.-+..     ...+|+.|.+-.||-.|.-++++
T Consensus        74 h~w~~~-----~~~~GL~F~se~eA~~F~~~v~~  102 (104)
T cd00837          74 HQWEDD-----NCVYGLNFASEEEAAQFRKKVLE  102 (104)
T ss_pred             EEEEcC-----CcEEEEeeCCHHHHHHHHHHHHh
Confidence            777754     33899999999999998877664

EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events

Probab=89.10  E-value=3.5  Score=33.37  Aligned_cols=94  Identities=23%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             ceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEe--CCeeEEEEecCCCccceeeeeccCCCCCCceeEeccccce
Q 023540           17 REVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRY   94 (281)
Q Consensus        17 ~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~--g~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE~ViDSSRY   94 (281)
                      -.++||.+=|.+ .+     .|...  .-+|.|.++.-  .....|++.|-.++.+--.|-++++     .+-.-++.-|
T Consensus        14 ~vA~v~~~~p~~-~~-----~W~~~--~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~-----~~Y~~~~~~F   80 (111)
T PF00568_consen   14 AVAQVYQADPDT-KR-----QWSPV--KGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPG-----FVYTKARPFF   80 (111)
T ss_dssp             EEEEEEEEETTT-SE-----SEEES--SSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT------EEEEESSSE
T ss_pred             EEEEEEEEEcCC-CC-----cEeeC--CeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCC-----CEEEeCCCcE
Confidence            456777774432 21     27422  66888998865  3678899999889998889988876     3333345545


Q ss_pred             EEEEEecCCCCeEEEeeeecccCcccchhhhhhh
Q 023540           95 FVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSD  128 (281)
Q Consensus        95 FVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD  128 (281)
                      ..-+  |++   ..+||+|.+-.||-.|.-.+++
T Consensus        81 h~f~--~~~---~~~GLnF~se~eA~~F~~~v~~  109 (111)
T PF00568_consen   81 HQFE--DDD---CVYGLNFASEEEADQFYKKVQE  109 (111)
T ss_dssp             EEEE--ETT---CEEEEEESSHHHHHHHHHHHHH
T ss_pred             EEEE--eCC---eEEEEecCCHHHHHHHHHHHhc
Confidence            5555  332   2999999999999999877765

This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....

>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm

Probab=88.63  E-value=7.2  Score=31.48  Aligned_cols=108  Identities=19%  Similarity=0.345  Sum_probs=75.3

Q ss_pred             eeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeeEEEEecCCCccceeeeeccCCCCCCcee
Q 023540            9 LEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVE   86 (281)
Q Consensus         9 iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g--~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE   86 (281)
                      =|.+||-.+ |-+|+.=.-  +     ..|   ...=+|-|||....  .++-|.+-...+|.|-..++|.++   -.++
T Consensus         8 ~E~~l~~~r-~Kl~~~~~~--~-----~~W---~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~---m~~~   73 (122)
T PF00638_consen    8 DEEILFEVR-AKLYRFDKE--D-----KEW---KERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKG---MKLK   73 (122)
T ss_dssp             SEEEEEEEE-EEEEEEETT--T-----TEE---EEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TT---C-EE
T ss_pred             CcEEEEEEE-EEEEEEeCC--C-----CCc---cccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCC---ceec
Confidence            467888877 888887331  1     346   23447999999875  578788887779999999999876   3567


Q ss_pred             EeccccceEEEE---EecCCCCeEEEeeeecccCcccchhhhhhhHH
Q 023540           87 TVLDSSRYFVLK---IEDGTGKHAFIGLGFNERNEAFDFNVALSDHE  130 (281)
Q Consensus        87 ~ViDSSRYFVLR---V~D~~GR~AfIGiGF~ERsdAFDFnVaLqD~~  130 (281)
                      +.-.|.+.++.-   ..|+.|....+=|=|.+=.+|=.|.-+++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~  120 (122)
T PF00638_consen   74 PMKGSEKSLVWTAIDYADEEGKPETYLIRFKSAEDADEFKKKIEEAK  120 (122)
T ss_dssp             ESTTTTTEEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred             ccccCCcEEEEEeccccCCCCceEEEEEEECCHHHHHHHHHHHHHHh
Confidence            766666655443   23456788888899988788888888887764

Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
1tqz_A	133	Solution Structure Of Necap1 Protein Length = 133		6e-32

>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein Length = 133

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 6   EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
           E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED 
Sbjct: 4   ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 63
Query: 66  NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
            SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64  VSGELFAQAPVEQYPG---IAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 124 VALSDHEKYVRRE 136
           V+L DH K+V++E
Sbjct: 121 VSLQDHFKWVKQE 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	2e-66

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11 Length = 133

 Score =  202 bits (516), Expect = 2e-66
 Identities = 67/131 (51%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 6   EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
           E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED 
Sbjct: 4   ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 63

Query: 66  NSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVA 125
            SGELFA   V+      +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+
Sbjct: 64  VSGELFAQAPVEQY-PGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVS 122

Query: 126 LSDHEKYVRRE 136
           L DH K+V++E
Sbjct: 123 LQDHFKWVKQE 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	100.0
1qc6_A	130	EVH1 domain from ENA/VAsp-like protein; AN incompl	94.43
1rrp_B	134	Nuclear pore complex protein NUP358; complex (smal	91.0
3n7c_A	130	ABR034WP; nuclear pore complex, NUP2, RAN-binding	90.77
1k5d_B	201	RAN-specific GTPase-activating protein; ranbp1, ra	90.51
1xke_A	130	RAN-binding protein 2; beta barrel, pleckstrin-hom	83.3

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11

Probab=100.00  E-value=2.1e-70  Score=459.98  Aligned_cols=131  Identities=51%  Similarity=0.859  Sum_probs=123.7

Q ss_pred             cccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeeEEEEecCCCccceeeeeccCCCCCCc
Q 023540            5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENS   84 (281)
Q Consensus         5 ~~~~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g~~~~I~LED~~tGeLFA~cPv~pg~~~~a   84 (281)
                      ++++||+|||+++|||||+|||++|++||||+||++++|||||||||+++|++|.|+|||++||+|||+|||.. ....+
T Consensus         3 ~~~~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~cPv~~-~~~~~   81 (133)
T 1tqz_A            3 AELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQ-YPGIA   81 (133)
T ss_dssp             CSCCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECS-SCCCC
T ss_pred             cccceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEeCcccC-CCCcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999932 12369


Q ss_pred             eeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHH
Q 023540           85 VETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRE  136 (281)
Q Consensus        85 VE~ViDSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~l~r~  136 (281)
                      ||+|+||||||||||+|++||||||||||+||+||||||||||||+||++++
T Consensus        82 VE~v~DSSRYFVlRv~d~~gr~AfiGiGF~eR~dAFDF~vaLqd~~k~~~~~  133 (133)
T 1tqz_A           82 VETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE  133 (133)
T ss_dssp             EEECTTCCSCEEEEEEETTTEEEEEEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred             eEEeecCcCeEEEEEECCCCcEEEEeeeecccccccchHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999763

>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4

Probab=94.43  E-value=0.079  Score=43.24  Aligned_cols=102  Identities=15%  Similarity=0.250  Sum_probs=71.5

Q ss_pred             eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeE-----EEEEEEeCCeeEEEEecC--CCccceeeeeccCCCCC
Q 023540           10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTG-----RLRVVSCKDRCEIRLEDP--NSGELFAACFVQPGQRE   82 (281)
Q Consensus        10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtG-----RLRVve~g~~~~I~LED~--~tGeLFA~cPv~pg~~~   82 (281)
                      |.+|+.. .++||.+=|.+.       .|.   +.-+|     ++.|......-.+||.|-  .++.+=..|.++++   
T Consensus         3 E~~i~~~-~A~V~~~d~~~~-------~W~---~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~---   68 (130)
T 1qc6_A            3 EQSICQA-RASVMVYDDTSK-------KWV---PIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKG---   68 (130)
T ss_dssp             CEEEEEE-EEEEEEEETTTT-------EEE---ECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTT---
T ss_pred             ceeEEEE-EEEEEEECCCCC-------cee---ECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCC---
Confidence            5666654 456666644322       274   33466     788888777888999986  57788889988876   


Q ss_pred             CceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHH
Q 023540           83 NSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKY  132 (281)
Q Consensus        83 ~aVE~ViDSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~  132 (281)
                        .+-.-++.+|..-+..     ...+||.|.+-.||=-|.-++++..+.
T Consensus        69 --~~y~~~~~~Fh~w~~~-----~~~~GL~F~se~eA~~F~~~~~~al~~  111 (130)
T 1qc6_A           69 --LKYNQATPTFHQWRDA-----RQVYGLNFASKEEATTFSNAMLFALNI  111 (130)
T ss_dssp             --CEEEEEETTEEEEECS-----SCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             --cEEeccCCeeEEEEcC-----CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence              3334488888888633     369999999999999999888876443

>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3

Probab=91.00  E-value=1.3  Score=36.04  Aligned_cols=107  Identities=16%  Similarity=0.284  Sum_probs=78.5

Q ss_pred             eeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEe--CCeeEEEEecCCCccceeeeeccCCCCCCcee
Q 023540            9 LEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVE   86 (281)
Q Consensus         9 iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~--g~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE   86 (281)
                      =|.+||-.+ |-+|+.=.-       -.+|.   .-=+|.|||...  ..++-|.+-...+|.|-+.++|.|+-   .+.
T Consensus        20 ~E~~lf~~r-aKL~~~~~~-------~~~Wk---erG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m---~~~   85 (134)
T 1rrp_B           20 DEEEFFCNR-AKLFRFDVE-------SKEWK---ERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDM---KLT   85 (134)
T ss_dssp             SEEEEEEEE-EEEEEECSS-------SSCEE---EEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSC---CCB
T ss_pred             CeEEEEEEE-EEEEEEccc-------CCCcc---cCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCc---eEe
Confidence            356777755 677776321       13463   233799999875  35777777776799999999998873   567


Q ss_pred             EeccccceEEEEEec---CCCCeEEEeeeecccCcccchhhhhhhH
Q 023540           87 TVLDSSRYFVLKIED---GTGKHAFIGLGFNERNEAFDFNVALSDH  129 (281)
Q Consensus        87 ~ViDSSRYFVLRV~D---~~GR~AfIGiGF~ERsdAFDFnVaLqD~  129 (281)
                      +...|.+.++.-..|   +.++...+.|=|..-.+|=.|..++.++
T Consensus        86 ~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~  131 (134)
T 1rrp_B           86 PNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEA  131 (134)
T ss_dssp             CSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHT
T ss_pred             ecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHH
Confidence            777788988887775   3456778899999888888888888765

>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A

Probab=90.77  E-value=2.3  Score=34.72  Aligned_cols=109  Identities=10%  Similarity=0.103  Sum_probs=73.6

Q ss_pred             eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC---CeeEEEEecCCCccceeeeeccCCCCCCcee
Q 023540           10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK---DRCEIRLEDPNSGELFAACFVQPGQRENSVE   86 (281)
Q Consensus        10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g---~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE   86 (281)
                      |.+||..+ |-+|+.=+-  +     ..|.   .-=.|-|||....   .++-|.+-...+|.|-+.++|.|+   -.+.
T Consensus        10 E~~lf~~r-aKL~~f~~~--~-----~~Wk---erG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~---m~~~   75 (130)
T 3n7c_A           10 EEVLFCEK-AKLLIFDSD--T-----KGYT---SRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKS---FKYQ   75 (130)
T ss_dssp             CEEEEEEE-EEEEEECC----------CEE---EEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTT---BCCE
T ss_pred             eeEEEEEE-EEEEEEeCC--C-----CCch---hcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCC---cEEe
Confidence            66777755 677776322  2     2453   2227999998754   356666666668999999999887   3567


Q ss_pred             EeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHH
Q 023540           87 TVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKY  132 (281)
Q Consensus        87 ~ViDSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~  132 (281)
                      +...|.+-||--....+|+-....|=|..=.+|=+|.-+++++.+-
T Consensus        76 ~~~~~~~~~v~~~~~~dgk~~~~~lrfks~e~A~~f~~~iee~~~~  121 (130)
T 3n7c_A           76 PIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLVGAVADAQQA  121 (130)
T ss_dssp             ESCTTCTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCccEEEEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHhh
Confidence            7765555554322223467778899999999999999999988654

>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*

Probab=90.51  E-value=1.5  Score=38.55  Aligned_cols=116  Identities=16%  Similarity=0.309  Sum_probs=83.4

Q ss_pred             eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeeEEEEecCCCccceeeeeccCCCCCCceeE
Q 023540           10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET   87 (281)
Q Consensus        10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g--~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE~   87 (281)
                      |.+||-++ |-+|+.-+-...     ..|.   .-=+|-|||....  .++.|.+--..++.|-+.++|.|+-   .+.+
T Consensus        45 Ee~lf~~R-aKLf~f~~d~~~-----~~WK---ERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m---~~~~  112 (201)
T 1k5d_B           45 EEELFKMR-AKLFRFASENDL-----PEWK---ERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMM---ELKP  112 (201)
T ss_dssp             CCCSEEEE-EEEEEECCTTSS-----CCEE---EEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSC---CCCB
T ss_pred             ceEEEEEe-eeEEEecccccC-----CCcc---ccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCc---eeee
Confidence            66777765 788887443222     2463   2236999999753  5777777666789999999998873   5666


Q ss_pred             eccccceEEEEE-ec---CCCCeEEEeeeecccCcccchhhhhhhHHHHHHHHh
Q 023540           88 VLDSSRYFVLKI-ED---GTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRREL  137 (281)
Q Consensus        88 ViDSSRYFVLRV-~D---~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~l~r~~  137 (281)
                      ..-|.|.||.-+ .|   +.++--.+-|=|..=.+|=.|..+++++.+-++...
T Consensus       113 ~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~~~~~  166 (201)
T 1k5d_B          113 NAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEERE  166 (201)
T ss_dssp             CSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHhhh
Confidence            667788888865 55   234556788889888889999999999988776543

>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3

Probab=83.30  E-value=15  Score=29.54  Aligned_cols=108  Identities=15%  Similarity=0.298  Sum_probs=77.0

Q ss_pred             eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeeEEEEecCCCccceeeeeccCCCCCCceeE
Q 023540           10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET   87 (281)
Q Consensus        10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g--~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE~   87 (281)
                      |.+||.++ |-+|+.=.-  +     .+|.   .-=+|-|||....  .++-|.+-...++.|-+.++|.|+-   .+.+
T Consensus         7 E~~l~~~r-aKL~~~~~~--~-----~~Wk---ERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m---~~~~   72 (130)
T 1xke_A            7 EKVLYSQR-VKLFRFDAE--V-----SQWK---ERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTM---NLKP   72 (130)
T ss_dssp             EEEEEEEE-EEEEEEETT--T-----TEEE---EEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTS---CEEE
T ss_pred             eEEEEEEE-EEEEEEcCC--C-----CCcc---cCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCc---EEee
Confidence            56777765 566665221  1     2463   2336899999763  5677777766689999999998873   5777


Q ss_pred             eccccceEEEEEec---CCCCeEEEeeeecccCcccchhhhhhhHHH
Q 023540           88 VLDSSRYFVLKIED---GTGKHAFIGLGFNERNEAFDFNVALSDHEK  131 (281)
Q Consensus        88 ViDSSRYFVLRV~D---~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K  131 (281)
                      ..-|-+.|+....|   +.++-....|=|..=.+|=.|..+++++.+
T Consensus        73 ~~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~  119 (130)
T 1xke_A           73 LSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQR  119 (130)
T ss_dssp             CTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHH
Confidence            76677777776554   345678889999988899999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1tqza1	133	b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [	3e-71

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  213 bits (545), Expect = 3e-71
 Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 1/133 (0%)

Query: 4   DDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLE 63
             E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LE
Sbjct: 2   AAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLE 61

Query: 64  DPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
           D  SGELFA   V       +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 62  DKVSGELFAQAPV-EQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120

Query: 124 VALSDHEKYVRRE 136
           V+L DH K+V++E
Sbjct: 121 VSLQDHFKWVKQE 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1tqza1	133	Necap1 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1k5db_	146	Ran-binding protein 1, Ranbp1 {Human (Homo sapiens	93.02
d1xkea1	118	Ran-binding protein 2 {Human (Homo sapiens) [TaxId	88.82
d1mkea1	114	Actin regulatory protein WASP {Rat (Rattus norvegi	84.1
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	84.09
d1rrpb_	134	Nuclear pore complex protein Nup358 {Human (Homo s	83.83

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.3e-71  Score=459.25  Aligned_cols=133  Identities=51%  Similarity=0.855  Sum_probs=124.9

Q ss_pred             CCCCcccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeeEEEEecCCCccceeeeeccCCC
Q 023540            1 MSFDDEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQ   80 (281)
Q Consensus         1 ~~~~~~~~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g~~~~I~LED~~tGeLFA~cPv~pg~   80 (281)
                      |..  |++||+||||++|||||+|||++|++||||+||++++|+|||||||+++|++|.|+|||++||+|||+|||.. .
T Consensus         1 m~~--e~~~E~vL~v~~ev~VYkIPP~~s~~GyrAadW~~~~~~wtgrlrv~~~g~~~~I~LeD~~tgeLFA~~P~~~-~   77 (133)
T d1tqza1           1 MAA--ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQ-Y   77 (133)
T ss_dssp             CCC--SCCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECS-S
T ss_pred             Ccc--hhceeEEeEEcceEEEEecCCCCCcCcEecCcCCCCCcceEEEEEEEEeCCeEEEEEecCCCcceEEeCccCC-C
Confidence            444  4779999999999999999999999999999999999999999999999999999999999999999999942 2


Q ss_pred             CCCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHH
Q 023540           81 RENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRE  136 (281)
Q Consensus        81 ~~~aVE~ViDSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~l~r~  136 (281)
                      +..+||+|+||||||||||+|++||||||||||+||+||||||||||||+||++++
T Consensus        78 ~~~aVE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~dR~dAFDFnvaLqDh~k~~k~~  133 (133)
T d1tqza1          78 PGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE  133 (133)
T ss_dssp             CCCCEEECTTCCSCEEEEEEETTTEEEEEEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred             CCcceEEeccCcceEEEEEECCCCcEEEEEeeecccCcccchhhHHHHHHHHHhcC
Confidence            34699999999999999999999999999999999999999999999999999763

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.39  Score=37.66  Aligned_cols=114  Identities=17%  Similarity=0.321  Sum_probs=83.3

Q ss_pred             eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeeEEEEecCCCccceeeeeccCCCCCCceeE
Q 023540           10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET   87 (281)
Q Consensus        10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g--~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE~   87 (281)
                      |.+||..+ |-+|+.=.-..     ..+|.   ..=.|.|+|....  .++-|.+-...+|.+-+.++|.++   ..+.+
T Consensus        24 E~~lf~~r-~Kl~~f~~~~~-----~~~Wk---erGvG~lkilk~k~t~~~RllmR~d~~~kv~lN~~i~~~---m~~~~   91 (146)
T d1k5db_          24 EEELFKMR-AKLFRFASEND-----LPEWK---ERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPM---MELKP   91 (146)
T ss_dssp             CCCSEEEE-EEEEEECCTTS-----SCCEE---EEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSS---CCCCB
T ss_pred             ceEEEEEe-eEEEEEcccCC-----CCCcc---ceeEEEEEEEEcCCCCeEEEEEEEcCCCcEEEEeEecCC---ceecc
Confidence            56677765 78887732211     13573   3336899998654  467677777678999999999887   35778


Q ss_pred             eccccceEEEEEe----cCCCCeEEEeeeecccCcccchhhhhhhHHHHHHH
Q 023540           88 VLDSSRYFVLKIE----DGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRR  135 (281)
Q Consensus        88 ViDSSRYFVLRV~----D~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~l~r  135 (281)
                      .-++++.++..+.    |++|+--...|=|..=.+|=.|.-+++++.+-++.
T Consensus        92 ~~~~~~~~~~~~~~d~~~~~~k~~~~~irfk~~e~a~~f~~~~~e~k~~~~~  143 (146)
T d1k5db_          92 NAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEE  143 (146)
T ss_dssp             CSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeEEEEecCCCccCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence            8889998887653    34678788889998888899999999998776643

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=2.3  Score=31.59  Aligned_cols=110  Identities=15%  Similarity=0.293  Sum_probs=79.9

Q ss_pred             eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeeEEEEecCCCccceeeeeccCCCCCCceeE
Q 023540           10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET   87 (281)
Q Consensus        10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g--~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE~   87 (281)
                      |.+||-.+ |-+|+.=+  .+     .+|.   .-=.|-|+|....  .++.|.+-...+|.+=+.++|.|+   ..+.+
T Consensus         1 E~~lf~~r-aKLy~~~~--~~-----~~Wk---erG~G~lkilk~~~~~~~RlvmR~d~~~kv~lN~~i~~~---~~~~~   66 (118)
T d1xkea1           1 EKVLYSQR-VKLFRFDA--EV-----SQWK---ERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTT---MNLKP   66 (118)
T ss_dssp             EEEEEEEE-EEEEEEET--TT-----TEEE---EEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTT---SCEEE
T ss_pred             CccEEEEE-EEEEEEeC--CC-----CChh---HhceeEEEEEEeCCCCcEEEEEEECCCCcEEEEeEEcCC---Ccccc
Confidence            56777755 77777522  12     2363   2335999998764  366666666678999999999887   35777


Q ss_pred             eccccceEEEEEec---CCCCeEEEeeeecccCcccchhhhhhhHHHHH
Q 023540           88 VLDSSRYFVLKIED---GTGKHAFIGLGFNERNEAFDFNVALSDHEKYV  133 (281)
Q Consensus        88 ViDSSRYFVLRV~D---~~GR~AfIGiGF~ERsdAFDFnVaLqD~~K~l  133 (281)
                      .-.+.+.++.-..|   +.++-....|=|.+-.+|=.|.-+++++.+.|
T Consensus        67 ~~~~~~~~~~~~~d~~~~~~~~~~~~lrfk~~e~a~~f~~~~~eak~~l  115 (118)
T d1xkea1          67 LSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL  115 (118)
T ss_dssp             CTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence            77777877766554   55778888999999999999999999987655

>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.10  E-value=2.3  Score=31.91  Aligned_cols=92  Identities=20%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             ceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEe--CCeeEEEEecCCCccceeeeeccCCCCCCceeEeccccce
Q 023540           17 REVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRY   94 (281)
Q Consensus        17 ~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~--g~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE~ViDSSRY   94 (281)
                      --|.||.+.|.    +    .|   .+..||-+-++--  .....|++.|..+|.+-=.|.++++..     ---+.--|
T Consensus        16 avv~lY~~~~~----~----~W---~~~~tG~v~~v~d~~~~~~~l~v~d~~~~~vi~e~eI~~~~~-----Y~k~~~~F   79 (114)
T d1mkea1          16 AVVQLYAADRN----C----MW---SKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFV-----YNSPRGYF   79 (114)
T ss_dssp             EEEEEEEEETT----T----EE---EEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCC-----CBCSSSSE
T ss_pred             EEEEEEEECCC----C----eE---EECCceEEEEEEECCCCeEEEEEEECCCCeEEEEEEccCCcE-----EeccCCeE
Confidence            44899997552    1    27   3567898777764  578899999999998777888877631     11123334


Q ss_pred             EEEEEecCCCCeEEEeeeecccCcccchhhhhhhH
Q 023540           95 FVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDH  129 (281)
Q Consensus        95 FVLRV~D~~GR~AfIGiGF~ERsdAFDFnVaLqD~  129 (281)
                      .+-  ++++   -.+||.|.+-.||-+|--.+++.
T Consensus        80 h~~--~~~~---~~~GL~F~~~~eA~~f~~~i~~~  109 (114)
T d1mkea1          80 HTF--AGDT---CQVALNFANEEEAKKFRKAVTDL  109 (114)
T ss_dssp             EEE--ECSS---SEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEE--EcCC---ceEEEeeCCHHHHHHHHHHHHHH
Confidence            444  4433   26899999999999998887764

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=84.09  E-value=3  Score=29.66  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             EEEEEEe----CCeeEEEEecCCCccceeeeeccCCC
Q 023540           48 RLRVVSC----KDRCEIRLEDPNSGELFAACFVQPGQ   80 (281)
Q Consensus        48 RLRVve~----g~~~~I~LED~~tGeLFA~cPv~pg~   80 (281)
                      .+||+++    .+.+.++|+-++-..++   .+.||+
T Consensus         8 ~~~v~~~~~~t~~~~~~~l~~~d~~~~~---~~~pGQ   41 (107)
T d1gvha2           8 DFRIVAKTPRSALITSFELEPVDGGAVA---EYRPGQ   41 (107)
T ss_dssp             EEEEEEEEECSSSEEEEEEEETTCCCCC---CCCTTC
T ss_pred             EEEEEEEEEeCCCeEEEEEEcCCcCccc---CCCCCC
Confidence            5677766    57888999865544553   345776

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=3.5  Score=31.23  Aligned_cols=106  Identities=18%  Similarity=0.312  Sum_probs=76.8

Q ss_pred             eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeeEEEEecCCCccceeeeeccCCCCCCceeE
Q 023540           10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET   87 (281)
Q Consensus        10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLRVve~g--~~~~I~LED~~tGeLFA~cPv~pg~~~~aVE~   87 (281)
                      |.+||.++ |-+|+.=+-  +     ..|.   .-=.|.|+|....  .++.|.+-.-.+|.+=+.+.|.++   ..+++
T Consensus        21 E~~if~~r-~KL~~~~~~--~-----~~Wk---erGvG~lkil~~~~t~~~RlvmR~d~~~kv~lN~~i~~~---~~~~~   86 (134)
T d1rrpb_          21 EEEFFCNR-AKLFRFDVE--S-----KEWK---ERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPD---MKLTP   86 (134)
T ss_dssp             EEEEEEEE-EEEEEECSS--S-----SCEE---EEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSS---CCCBC
T ss_pred             cEEEEEEe-eEEEEEcCC--C-----Ccee---eeeEEEEEEEEcCCCCcEEEEEEEcCCCcEEEEEEECCC---cEEee
Confidence            67888764 777776221  2     2463   2336999998774  577777777678999999999876   46788


Q ss_pred             eccccceEEEEEec---CCCCeEEEeeeecccCcccchhhhhhhH
Q 023540           88 VLDSSRYFVLKIED---GTGKHAFIGLGFNERNEAFDFNVALSDH  129 (281)
Q Consensus        88 ViDSSRYFVLRV~D---~~GR~AfIGiGF~ERsdAFDFnVaLqD~  129 (281)
                      .-.+.+.++....|   ++++--.+.|=|.+=.+|=.|.-+++++
T Consensus        87 ~~~~~~~~~~~~~d~~~~~~k~~~~~lrfk~~e~a~~f~~~~~ea  131 (134)
T d1rrpb_          87 NAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEA  131 (134)
T ss_dssp             STTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHT
T ss_pred             cCCCceEEEEEeeccCCCCCcEEEEEEEECCHHHHHHHHHHHHHh
Confidence            88888888777766   3456667788888778888888777765