Citrus Sinensis ID: 023549

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
cHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEccccccccEEEcccccccEEEEHHHHHHHHHccccccccccccccccccEEEEcccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHccc
cHHHHHHHHHHHcccHHHHHHHHccccccccEccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHccccccccccccEccccccccccEEEEEEccccccEEEEEcccccccEEEEcccccccEEEEccHHHHHHHccccccccEEEEcccccEEEEEEEcccccccEEcccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccc
MEEVFSQSKRFFKMPLNEKMKVLRnekhrgytpvldelldpdtqvrgdykegyyigvevpegdpesekpfygpnvwpapdclpgwRETMERFQREALEVAKAVARIIALALdldadffdkpeMLGQAIATLRLLHyegqisdpskgmygagahsdyGLITLLATdevaglqickdrdakpqlwedvapmkgAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVepshdclveclptcksdknppkfppikcetyLSQRYKDTHADLnmynkqqt
meevfsqskrffkmplnekmkvlrnekhrgytpvldelldpdtqvrgDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPtcksdknppkfppIKCETYLSQRYKDTHADLNMYNKQQT
MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIalaldldadFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
****************************RGYTPVLDELLDPDTQVRGDYKEGYYIGVEV**********FYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCK*********PIKCETYLSQ*****************
MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDE*********GDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDP***MYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADL********
MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQ*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query281 2.2.26 [Sep-21-2011]
Q54RA4363 Probable iron/ascorbate o yes no 0.779 0.603 0.303 9e-25
P40902397 Sexual differentiation pr yes no 0.761 0.539 0.303 9e-23
A6BM06368 1-aminocyclopropane-1-car N/A no 0.832 0.635 0.282 4e-21
Q76NT9368 1-aminocyclopropane-1-car no no 0.832 0.635 0.282 4e-21
Q7LL04321 UPF0676 protein C1494.01 no no 0.768 0.672 0.326 2e-19
O49561338 Gibberellin 2-beta-dioxyg no no 0.512 0.426 0.357 3e-18
A2A1A0352 S-norcoclaurine synthase N/A no 0.640 0.511 0.348 1e-17
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.825 0.684 0.279 2e-17
Q96330336 Flavonol synthase/flavano no no 0.790 0.660 0.292 7e-17
Q8XPV7345 2-oxoglutarate-dependent yes no 0.811 0.660 0.275 1e-16
>sp|Q54RA4|Y3291_DICDI Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1 Back     alignment and function desciption
 Score =  114 bits (285), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 35/254 (13%)

Query: 8   SKRFFKMPLNEKMKV---LRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDP 64
           SK+FF +  + KMK    L  +  RGY  V  EL    T    D+KEG Y+G E+ +  P
Sbjct: 67  SKKFFSLDQSIKMKYRMELAQKAWRGYFVVGGEL----TSGLKDWKEGLYLGTELNDDHP 122

Query: 65  E--SEKPFYGPNVWPAPD-----CLPGWRETMERFQREALEVAKAVARIIALALDLDADF 117
              ++ P +G N++P  +      + G+++T+  +  +  ++  ++  +IA++L+L AD+
Sbjct: 123 LVIAQTPLHGLNLFPTLEEEIEYDIVGFKDTILTYIDKVTKLGHSLMELIAISLNLSADY 182

Query: 118 FDKPEMLGQAIATLRLLHYEGQIS-------------DPSKGMYGAGAHSDYGLITLLAT 164
           F         +   R+ +Y   IS             D  K  +G G H+DYG++T+L  
Sbjct: 183 F-SSRYTKDPLILYRIFNYPSIISSGDDNKTTGESSDDNDKVEWGVGEHTDYGVLTILYQ 241

Query: 165 DEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRV--LGTGRE 222
           D+V GLQ+          W    P+KG F+ N+GDML+R +  +++ST HRV    +GR+
Sbjct: 242 DDVGGLQVHSKNG-----WISAPPIKGTFVCNIGDMLDRMTGGLYRSTPHRVELNRSGRD 296

Query: 223 RYSIAFFVEPSHDC 236
           R S   F +P+ + 
Sbjct: 297 RISFPLFFDPNFNS 310

Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|P40902|ISP7_SCHPO Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isp7 PE=2 SV=1 Back     alignment and function description
>sp|A6BM06|ACCO1_DICMU 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1 Back     alignment and function description
>sp|Q76NT9|ACCO1_DICDI 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum GN=aco PE=2 SV=1 Back     alignment and function description
>sp|Q7LL04|YQK1_SCHPO UPF0676 protein C1494.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1494.01 PE=3 SV=2 Back     alignment and function description
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description
>sp|Q96330|FLS1_ARATH Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8XPV7|EFE_RALSO 2-oxoglutarate-dependent ethylene/succinate-forming enzyme OS=Ralstonia solanacearum (strain GMI1000) GN=efe PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
225445104358 PREDICTED: probable iron/ascorbate oxido 1.0 0.784 0.846 1e-141
297738763330 unnamed protein product [Vitis vinifera] 1.0 0.851 0.846 1e-141
388522983340 unknown [Medicago truncatula] 1.0 0.826 0.825 1e-140
255546339340 Hyoscyamine 6-dioxygenase, putative [Ric 1.0 0.826 0.807 1e-139
225445102364 PREDICTED: probable iron/ascorbate oxido 1.0 0.771 0.829 1e-139
255641899331 unknown [Glycine max] 1.0 0.848 0.819 1e-137
356495885331 PREDICTED: probable iron/ascorbate oxido 1.0 0.848 0.797 1e-136
224143624336 predicted protein [Populus trichocarpa] 1.0 0.836 0.812 1e-136
255636224331 unknown [Glycine max] 1.0 0.848 0.793 1e-136
223944829329 unknown [Zea mays] gi|413947624|gb|AFW80 1.0 0.854 0.758 1e-130
>gi|225445104|ref|XP_002283713.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/281 (84%), Positives = 258/281 (91%)

Query: 1   MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVP 60
           M+EVF+QSKRFF +PL+EKMK LRNEKHRGYTPVLDE+LDP+ QV GDYKEGYYIGVEVP
Sbjct: 78  MDEVFAQSKRFFTLPLSEKMKHLRNEKHRGYTPVLDEVLDPENQVNGDYKEGYYIGVEVP 137

Query: 61  EGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDK 120
           E DP+SEKPFYGPNVWPA D LP WR+TME+F +EALEVAKAVARIIALALDL+ DFFDK
Sbjct: 138 EHDPKSEKPFYGPNVWPAADRLPEWRQTMEKFHQEALEVAKAVARIIALALDLERDFFDK 197

Query: 121 PEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKP 180
           PEMLG  IATLRLLHYEGQISDP KG+YGAGAHSDYGLITLLATD+V GLQICKD+DA+P
Sbjct: 198 PEMLGDPIATLRLLHYEGQISDPLKGIYGAGAHSDYGLITLLATDDVLGLQICKDKDARP 257

Query: 181 QLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVEC 240
           Q WE VAP+KGAFIVNLGDMLERWSNCIFKSTLHRVL  G ERYSIA+FVEPSHDCLVEC
Sbjct: 258 QTWEYVAPLKGAFIVNLGDMLERWSNCIFKSTLHRVLVHGPERYSIAYFVEPSHDCLVEC 317

Query: 241 LPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT 281
           LPTCKSDKNPPKFPP+KC TYL+QRYKDTHADLN+Y K Q 
Sbjct: 318 LPTCKSDKNPPKFPPVKCGTYLTQRYKDTHADLNLYTKHQA 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738763|emb|CBI28008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388522983|gb|AFK49553.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255546339|ref|XP_002514229.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] gi|223546685|gb|EEF48183.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225445102|ref|XP_002283708.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255641899|gb|ACU21218.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356495885|ref|XP_003516801.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Glycine max] Back     alignment and taxonomy information
>gi|224143624|ref|XP_002325020.1| predicted protein [Populus trichocarpa] gi|222866454|gb|EEF03585.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255636224|gb|ACU18453.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|223944829|gb|ACN26498.1| unknown [Zea mays] gi|413947624|gb|AFW80273.1| hypothetical protein ZEAMMB73_441487 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
TAIR|locus:2203325329 AT1G35190 [Arabidopsis thalian 0.989 0.844 0.691 1e-109
TAIR|locus:2075125330 AT3G46490 [Arabidopsis thalian 0.964 0.821 0.628 8.4e-97
TAIR|locus:2078241286 AT3G46480 [Arabidopsis thalian 0.697 0.685 0.649 2.3e-93
TAIR|locus:2075130251 AT3G46500 [Arabidopsis thalian 0.893 1.0 0.602 2e-88
TAIR|locus:504955434247 AT4G16765 [Arabidopsis thalian 0.871 0.991 0.456 3.2e-58
ASPGD|ASPL0000035942349 AN11188 [Emericella nidulans ( 0.953 0.767 0.394 9.1e-45
UNIPROTKB|G4NB73346 MGG_00611 "2OG-Fe(II) oxygenas 0.836 0.679 0.356 2.6e-31
TIGR_CMR|SPO_2669317 SPO_2669 "oxidoreductase, 2OG- 0.843 0.747 0.347 1.8e-30
UNIPROTKB|G4N6Z0336 MGG_06487 "Thymine dioxygenase 0.903 0.755 0.349 1.2e-26
ASPGD|ASPL0000015471335 AN3672 [Emericella nidulans (t 0.836 0.701 0.341 6.6e-26
TAIR|locus:2203325 AT1G35190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 193/279 (69%), Positives = 233/279 (83%)

Query:     1 MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVP 60
             M++VF QSK+ F +PL EKMKVLRNEKHRGYTPVLDELLDP  Q+ GD+KEGYYIG+EVP
Sbjct:    51 MDDVFEQSKKLFALPLEEKMKVLRNEKHRGYTPVLDELLDPKNQINGDHKEGYYIGIEVP 110

Query:    61 EGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDK 120
             + DP  +KPFYGPN WP  D LPGWRETME++ +EAL V+ A+AR++         +FD+
Sbjct:   111 KDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIARLLALALDLDVGYFDR 170

Query:   121 PEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKP 180
              EMLG+ IAT+RLL Y+G ISDPSKG+Y  GAHSD+G++TLLATD V GLQICKD++A P
Sbjct:   171 TEMLGKPIATMRLLRYQG-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMP 229

Query:   181 QLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVEC 240
             Q WE V P+KGAFIVNLGDMLERWSN  FKSTLHRVLG G+ERYSI FFVEP+HDCLVEC
Sbjct:   230 QKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVEC 289

Query:   241 LPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQ 279
             LPTCKS+   PK+PPIKC TYL+QRY++THA+L++Y++Q
Sbjct:   290 LPTCKSESELPKYPPIKCSTYLTQRYEETHANLSIYHQQ 328
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009821 "alkaloid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2075125 AT3G46490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078241 AT3G46480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075130 AT3G46500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955434 AT4G16765 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NB73 MGG_00611 "2OG-Fe(II) oxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2669 SPO_2669 "oxidoreductase, 2OG-Fe(II) oxygenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|G4N6Z0 MGG_06487 "Thymine dioxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000015471 AN3672 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016670001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (330 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-156
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-75
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 4e-72
PLN02485329 PLN02485, PLN02485, oxidoreductase 4e-40
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 5e-28
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-27
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-25
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-24
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-23
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-22
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 8e-22
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-19
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 7e-19
PLN02947374 PLN02947, PLN02947, oxidoreductase 9e-19
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-18
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 6e-18
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-17
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-16
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 6e-16
PLN02216357 PLN02216, PLN02216, protein SRG1 7e-16
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-15
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-15
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-14
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-13
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 8e-13
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-12
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-09
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  437 bits (1125), Expect = e-156
 Identities = 199/279 (71%), Positives = 240/279 (86%), Gaps = 1/279 (0%)

Query: 1   MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVP 60
           M++VF QSK+FF +PL EKMKVLRNEKHRGYTPVLDE LDP  Q+ GD+KEGYYIG+EVP
Sbjct: 54  MDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVP 113

Query: 61  EGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDK 120
           + DP  +KPFYGPN WP  D LPGWRETME++ +EAL V+ A+A+++ALALDLD  +FD+
Sbjct: 114 KDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDR 173

Query: 121 PEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKP 180
            EMLG+ IAT+RLL Y+G ISDPSKG+Y  GAHSD+G++TLLATD V GLQICKD++A P
Sbjct: 174 TEMLGKPIATMRLLRYQG-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMP 232

Query: 181 QLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVEC 240
           Q WE V P+KGAFIVNLGDMLERWSN  FKSTLHRVLG G+ERYSI FFVEP+HDCLVEC
Sbjct: 233 QKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVEC 292

Query: 241 LPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQ 279
           LPTCKS+ + PK+PPIKC TYL+QRY++THA L++Y++Q
Sbjct: 293 LPTCKSESDLPKYPPIKCSTYLTQRYEETHAKLSIYHQQ 331

Length = 332
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 281
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02997325 flavonol synthase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.9
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.08
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 95.34
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.81
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 93.86
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 93.74
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 93.17
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 89.32
TIGR02466201 conserved hypothetical protein. This family consis 82.68
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 80.73
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=1.3e-63  Score=454.16  Aligned_cols=277  Identities=70%  Similarity=1.267  Sum_probs=235.1

Q ss_pred             CHHHHHHHHHHhcCCHHHHhhhcCCCCCcccccccccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 023549            1 MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPD   80 (281)
Q Consensus         1 v~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~wP~~~   80 (281)
                      ++++++++++||+||.|+|+++.....++||.+.+.+..+.......||+|.|.+..+.+.+++.....++.+|.||..+
T Consensus        54 ~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~  133 (332)
T PLN03002         54 MDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDAD  133 (332)
T ss_pred             HHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCc
Confidence            47899999999999999999987666689999887776544333236999999998654444333223346789999865


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCcccccCccceeeeccccCCCCCCCCCCCcccccccCCcee
Q 023549           81 CLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLIT  160 (281)
Q Consensus        81 ~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~~~HtD~g~lT  160 (281)
                      .+|+||+++++|++.|.+|+..||++|+++||+++++|.+...+....+.||+++||+++.. ....+|+++|||+|+||
T Consensus       134 ~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lT  212 (332)
T PLN03002        134 VLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQGISDP-SKGIYACGAHSDFGMMT  212 (332)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhccccccCCCchheeeeeCCCCCCc-ccCccccccccCCCeEE
Confidence            56899999999999999999999999999999999999732245566789999999996543 23578999999999999


Q ss_pred             EEeeCCCCceeEEeCCCCCCCceEEcCCCCCeEEEEcchhhHHHhCCccccccccccCCCCCceeeEEeecCCCCceeec
Q 023549          161 LLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVEC  240 (281)
Q Consensus       161 ll~~d~~~GLqv~~~~~~~~~~W~~v~~~p~~~vVnvGd~l~~~SnG~~~s~~HRV~~~~~~R~S~~~F~~P~~d~~i~p  240 (281)
                      ||+||+++||||+.+++..+++|++|+|.||++|||+||+|++||||+|+|++|||+.++.+|||++||+.|+.|++|.|
T Consensus       213 lL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRVv~~~~~R~Sia~F~~p~~d~~i~p  292 (332)
T PLN03002        213 LLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVEC  292 (332)
T ss_pred             EEeeCCCCceEEecCCCCCCCcEEECCCCCCeEEEEHHHHHHHHhCCeeECcCCeecCCCCCeeEEEEEecCCCCeeEec
Confidence            99999999999987542122459999999999999999999999999999999999987789999999999999999999


Q ss_pred             CCCCcCCCCCCCCCCcCHHHHHHHHHHhhhhhcccccc
Q 023549          241 LPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNK  278 (281)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  278 (281)
                      +++++++++|++|++++++||+..++...+.+.+.+.+
T Consensus       293 l~~~~~~~~p~~y~~~~~~e~l~~~~~~~~~~~~~~~~  330 (332)
T PLN03002        293 LPTCKSESDLPKYPPIKCSTYLTQRYEETHAKLSIYHQ  330 (332)
T ss_pred             CCcccCCCCcccCCCccHHHHHHHHHHHHhhhhccccC
Confidence            99999999999999999999999999999887765554

>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 1e-21
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 7e-12
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 5e-11
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 5e-11
1w9y_A319 The Structure Of Acc Oxidase Length = 319 5e-11
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 9e-09
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 9e-09
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-08
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 124/275 (45%), Gaps = 21/275 (7%)
Query: 1   MEEVFSQSKRFFKMPLNEKMKVLRNEK-HRGYTPVLDELLDPDTQVRGDYKEGYYIGVEV 59
           ++     +K FF +P+  K +    +   RGY P   E          D KE ++ G ++
Sbjct: 48  IDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGADHY--DLKEFWHXGRDL 105
Query: 60  PEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFD 119
           P G     +     NVWPA   +P ++  +             V   I         FF 
Sbjct: 106 PPG--HRFRAHXADNVWPAE--IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFK 161
Query: 120 KPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAK 179
                G ++  LRLLHY   I   + G+  AGAH D   ITLL   E  GL++  DRD +
Sbjct: 162 PTVQDGNSV--LRLLHYP-PIPKDATGVR-AGAHGDINTITLLLGAEEGGLEVL-DRDGQ 216
Query: 180 PQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLG-----TGRERYSIAFFVEPSH 234
              W  + P  G  ++N+GD LER +N +  ST+HRV+       G  RYS  FF+  + 
Sbjct: 217 ---WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFAS 273
Query: 235 DCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYKD 268
           D  ++ L  C + +NP ++P  I  + +L QR ++
Sbjct: 274 DYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE 308
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-122
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-112
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-100
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-88
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 5e-52
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 7e-52
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
 Score =  349 bits (899), Expect = e-122
 Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 21/277 (7%)

Query: 1   MEEVFSQSKRFFKMPLNEKMKVLR-NEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEV 59
           ++     +K FF +P+  K +        RGY P   E          D KE +++G ++
Sbjct: 48  IDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGAD--HYDLKEFWHMGRDL 105

Query: 60  PEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFD 119
           P G     +     NVWP    +P ++  +         +   V   IA  L L+ DFF 
Sbjct: 106 PPGHRF--RAHMADNVWP--AEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK 161

Query: 120 KPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAK 179
               +    + LRLLHY     D       AGAH D   ITLL   E  GL++  DRD +
Sbjct: 162 --PTVQDGNSVLRLLHYPPIPKDA--TGVRAGAHGDINTITLLLGAEEGGLEVL-DRDGQ 216

Query: 180 PQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVL-----GTGRERYSIAFFVEPSH 234
              W  + P  G  ++N+GDMLER +N +  ST+HRV+       G  RYS  FF+  + 
Sbjct: 217 ---WLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFAS 273

Query: 235 DCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYKDTH 270
           D  ++ L  C + +NP ++P  I  + +L QR ++  
Sbjct: 274 DYEIKTLQNCVTAENPDRYPESITADEFLQQRLREIK 310
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.57
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 93.25
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.8
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 91.38
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 88.84
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 88.77
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 85.46
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 84.36
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 83.65
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=2.6e-61  Score=435.45  Aligned_cols=254  Identities=32%  Similarity=0.574  Sum_probs=220.1

Q ss_pred             CHHHHHHHHHHhcCCHHHHhhhcCC-CCCcccccccccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCC
Q 023549            1 MEEVFSQSKRFFKMPLNEKMKVLRN-EKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAP   79 (281)
Q Consensus         1 v~~~~~~~~~fF~lp~e~K~~~~~~-~~~~Gy~~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~wP~~   79 (281)
                      ++++++.+++||+||.|+|+++... ..++||.+.+.+.....  ...||+|.|.++.+.+.+++.  .....+|.||..
T Consensus        48 ~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~g~e~~~~~--~~~D~kE~~~~~~~~~~~~~~--~~~~~~n~wP~~  123 (312)
T 3oox_A           48 IDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGA--DHYDLKEFWHMGRDLPPGHRF--RAHMADNVWPAE  123 (312)
T ss_dssp             HHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEECCCCCCSTTS--CSCCCCEEEEECCCCCTTCGG--GGTSCCCCCCTT
T ss_pred             HHHHHHHHHHHHCCCHHHHhhhccCCCCccccccccceecCCC--CCCCceeeeEeecCCCcCCcc--hhccCCCCCCCc
Confidence            4689999999999999999998763 45899998887765432  246999999997543332211  123457899986


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCcccccCccceeeeccccCCCCCCCCCCCcccccccCCce
Q 023549           80 DCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLI  159 (281)
Q Consensus        80 ~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~~~HtD~g~l  159 (281)
                      .  |+||+++++|++.|.+++..||++|+++||+++++|.  +.+..+.+.+|++||||++.+ ..+ +|+++|||+|+|
T Consensus       124 ~--p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~~~~~~~~~lr~~~Ypp~~~~-~~~-~g~~~HtD~g~l  197 (312)
T 3oox_A          124 I--PAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK--PTVQDGNSVLRLLHYPPIPKD-ATG-VRAGAHGDINTI  197 (312)
T ss_dssp             S--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTH--HHHTTCCCEEEEEEECCCSSC-CC---CEEEECCCSSE
T ss_pred             C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH--HHhcCCcceeeeEecCCCCCC-cCC-cCccceecCceE
Confidence            4  9999999999999999999999999999999999998  777788899999999997654 233 999999999999


Q ss_pred             eEEeeCCCCceeEEeCCCCCCCceEEcCCCCCeEEEEcchhhHHHhCCccccccccccCC-----CCCceeeEEeecCCC
Q 023549          160 TLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGT-----GRERYSIAFFVEPSH  234 (281)
Q Consensus       160 Tll~~d~~~GLqv~~~~~~~~~~W~~v~~~p~~~vVnvGd~l~~~SnG~~~s~~HRV~~~-----~~~R~S~~~F~~P~~  234 (281)
                      |||+||.++||||+.+++.    |++|+|.||++||||||+|++||||+|||++|||+++     +.+|+|++||++|+.
T Consensus       198 TlL~qd~v~GLqV~~~~g~----W~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~  273 (312)
T 3oox_A          198 TLLLGAEEGGLEVLDRDGQ----WLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFAS  273 (312)
T ss_dssp             EEEECCTTSCEEEECTTSC----EEECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCT
T ss_pred             EEEeEcCcCceEEECCCCc----EEECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCC
Confidence            9999999999999976654    9999999999999999999999999999999999875     457999999999999


Q ss_pred             CceeecCCCCcCCCCCCCCC-CcCHHHHHHHHHHh
Q 023549          235 DCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYKD  268 (281)
Q Consensus       235 d~~i~p~~~~~~~~~~~~~~-~~~~~e~~~~~~~~  268 (281)
                      |++|.|+++++++++|++|+ ++|++||+..++++
T Consensus       274 d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~  308 (312)
T 3oox_A          274 DYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE  308 (312)
T ss_dssp             TCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHH
T ss_pred             CcEEecCccccCCCCcccCCCCeeHHHHHHHHHHH
Confidence            99999999999999999999 99999999999874
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 281
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 7e-44
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-40
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-37
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-36
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  150 bits (379), Expect = 7e-44
 Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 19/267 (7%)

Query: 1   MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVP 60
           ME V    + FF + + EK K   ++          +L +  +         +++     
Sbjct: 91  MERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEE 150

Query: 61  EGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDK 120
           + D               P     + E    + +    +A  V + +++ L L+ D  +K
Sbjct: 151 KRDL-----------SIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK 199

Query: 121 PEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKP 180
                + +  L++           +   G  AH+D   +T +  + V GLQ+  +     
Sbjct: 200 EVGGLEEL-LLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGK--- 255

Query: 181 QLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVL-GTGRERYSIAFFVEPSHDCLV- 238
             W     +  + ++++GD LE  SN  +KS LHR L    + R S A F EP  D +V 
Sbjct: 256 --WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVL 313

Query: 239 ECLPTCKSDKNPPKFPPIKCETYLSQR 265
           + LP   S ++P KFPP     ++  +
Sbjct: 314 KPLPEMVSVESPAKFPPRTFAQHIEHK 340
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.91
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 85.94
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.1e-54  Score=391.60  Aligned_cols=247  Identities=23%  Similarity=0.386  Sum_probs=202.7

Q ss_pred             CHHHHHHHHHHhcCCHHHHhhhcCCCCCcccccccccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 023549            1 MEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPD   80 (281)
Q Consensus         1 v~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~wP~~~   80 (281)
                      +++++++++.||+||.|+|+++.......+|...+.+.... .....++.+.+..... +.       ....+|.||...
T Consensus        91 i~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~-~~-------~~~~~n~wp~~~  161 (349)
T d1gp6a_          91 MERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN-ASGQLEWEDYFFHLAY-PE-------EKRDLSIWPKTP  161 (349)
T ss_dssp             HHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCS-TTCCCCSCEEEEEEEE-SG-------GGCCGGGSCCSS
T ss_pred             HHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccc-cccccchhhhhccccc-cc-------cccccccccccc
Confidence            47899999999999999999987643332333222222211 1222455555433211 11       124568999876


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCcccc---cCccceeeeccccCCCCCCCCCCCcccccccCC
Q 023549           81 CLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEML---GQAIATLRLLHYEGQISDPSKGMYGAGAHSDYG  157 (281)
Q Consensus        81 ~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~---~~~~~~lrl~~Yp~~~~~~~~~~~~~~~HtD~g  157 (281)
                        +.|++.+.+|++.|.+++..|+++++++||+++++|.  ..+   ....+.+|++|||+.+.  ....+|+++|||+|
T Consensus       162 --~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~--~~~~~~~~~~~~lrl~~Yp~~~~--~~~~~g~~~HtD~g  235 (349)
T d1gp6a_         162 --SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE--KEVGGLEELLLQMKINYYPKCPQ--PELALGVEAHTDVS  235 (349)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHH--HHTTHHHHCEEEEEEEEECCCSS--TTTCCSEEEECCCS
T ss_pred             --chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHH--HHhccccccceeeeecccccccc--hhhccccccCCCCc
Confidence              8999999999999999999999999999999999887  554   33677899999998653  45678999999999


Q ss_pred             ceeEEeeCCCCceeEEeCCCCCCCceEEcCCCCCeEEEEcchhhHHHhCCccccccccccC-CCCCceeeEEeecCCCCc
Q 023549          158 LITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLG-TGRERYSIAFFVEPSHDC  236 (281)
Q Consensus       158 ~lTll~~d~~~GLqv~~~~~~~~~~W~~v~~~p~~~vVnvGd~l~~~SnG~~~s~~HRV~~-~~~~R~S~~~F~~P~~d~  236 (281)
                      +||||+|+.++||||+.+++     |++|+|.+|++|||+||+|++||||+|||++|||+. ++.+||||+||++|+.|+
T Consensus       236 ~lTlL~q~~~~GLqv~~~g~-----W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~  310 (349)
T d1gp6a_         236 ALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDK  310 (349)
T ss_dssp             SEEEEEECSCCCEEEEETTE-----EEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTT
T ss_pred             ceEEEeccCCcceeeecCCc-----eEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcc
Confidence            99999999999999987655     999999999999999999999999999999999987 477999999999999998


Q ss_pred             ee-ecCCCCcCCCCCCCCCCcCHHHHHHHHHH
Q 023549          237 LV-ECLPTCKSDKNPPKFPPIKCETYLSQRYK  267 (281)
Q Consensus       237 ~i-~p~~~~~~~~~~~~~~~~~~~e~~~~~~~  267 (281)
                      +| .|+++++++++|++|++||++||++.++.
T Consensus       311 ~i~~pl~~~v~~~~p~~y~~~t~~e~~~~rl~  342 (349)
T d1gp6a_         311 IVLKPLPEMVSVESPAKFPPRTFAQHIEHKLF  342 (349)
T ss_dssp             CEECCCGGGCCSSSCCSSCCEEHHHHHHHHHH
T ss_pred             eeecCCHHHcCCCCCCCCCCccHHHHHHHHHh
Confidence            65 89999999999999999999999999874
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure